Query 009017
Match_columns 546
No_of_seqs 619 out of 2277
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 19:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 100.0 5.5E-71 1.2E-75 558.6 22.2 238 300-539 231-524 (526)
2 COG0745 OmpR Response regulato 99.9 1.9E-20 4.1E-25 186.5 17.9 155 18-176 1-183 (229)
3 COG4566 TtrR Response regulato 99.8 2.7E-20 5.9E-25 177.6 14.2 149 15-166 2-162 (202)
4 COG2204 AtoC Response regulato 99.8 8.6E-18 1.9E-22 181.3 16.5 119 15-136 2-124 (464)
5 COG4753 Response regulator con 99.7 6.7E-18 1.5E-22 181.9 13.6 118 17-137 1-125 (475)
6 TIGR01557 myb_SHAQKYF myb-like 99.7 1.8E-18 3.8E-23 136.4 6.1 54 305-358 2-56 (57)
7 PF00072 Response_reg: Respons 99.7 1.1E-16 2.4E-21 137.8 14.8 107 20-129 1-112 (112)
8 COG2197 CitB Response regulato 99.7 5.8E-17 1.3E-21 159.4 14.2 153 18-173 1-175 (211)
9 COG4565 CitB Response regulato 99.7 1E-16 2.2E-21 155.9 14.2 117 18-137 1-123 (224)
10 PRK10529 DNA-binding transcrip 99.7 5.5E-15 1.2E-19 142.1 19.1 155 18-175 2-180 (225)
11 PRK10816 DNA-binding transcrip 99.7 6E-15 1.3E-19 141.9 18.3 153 18-173 1-176 (223)
12 COG3437 Response regulator con 99.6 1.1E-15 2.5E-20 158.3 13.5 118 15-135 12-136 (360)
13 PRK11083 DNA-binding response 99.6 7.7E-15 1.7E-19 140.3 17.7 143 17-162 3-170 (228)
14 PRK10840 transcriptional regul 99.6 4.9E-15 1.1E-19 143.8 16.2 152 17-171 3-175 (216)
15 PRK10046 dpiA two-component re 99.6 7.1E-15 1.5E-19 144.3 17.1 119 14-135 1-125 (225)
16 PRK10766 DNA-binding transcrip 99.6 1.4E-14 3E-19 138.9 18.6 116 17-135 2-120 (221)
17 PRK10643 DNA-binding transcrip 99.6 1.3E-14 2.8E-19 138.1 18.1 139 18-159 1-162 (222)
18 TIGR02154 PhoB phosphate regul 99.6 1.1E-14 2.4E-19 138.7 17.6 141 17-160 2-168 (226)
19 PRK09836 DNA-binding transcrip 99.6 1.3E-14 2.9E-19 139.8 18.1 153 18-173 1-177 (227)
20 PRK10336 DNA-binding transcrip 99.6 1.4E-14 3E-19 137.9 17.6 141 18-161 1-164 (219)
21 PRK10161 transcriptional regul 99.6 1.7E-14 3.6E-19 139.4 18.2 141 18-161 3-169 (229)
22 PRK11517 transcriptional regul 99.6 1.8E-14 3.9E-19 137.8 17.9 153 18-173 1-174 (223)
23 COG3706 PleD Response regulato 99.6 7.8E-15 1.7E-19 157.4 15.9 118 16-136 131-254 (435)
24 COG0784 CheY FOG: CheY-like re 99.6 2.8E-14 6.1E-19 125.8 16.2 114 16-132 4-124 (130)
25 PRK10955 DNA-binding transcrip 99.6 3.3E-14 7.1E-19 136.8 18.1 114 18-135 2-118 (232)
26 PRK11173 two-component respons 99.6 2.1E-14 4.5E-19 140.1 16.8 116 17-135 3-121 (237)
27 PRK09483 response regulator; P 99.6 2.7E-14 5.8E-19 136.3 16.4 146 17-165 1-167 (217)
28 PRK10360 DNA-binding transcrip 99.6 5.3E-14 1.1E-18 132.2 17.5 144 17-163 1-154 (196)
29 PRK09468 ompR osmolarity respo 99.6 5.7E-14 1.2E-18 136.8 18.2 152 17-171 5-186 (239)
30 TIGR03787 marine_sort_RR prote 99.6 1.1E-13 2.4E-18 133.2 19.4 115 19-135 2-121 (227)
31 PRK09958 DNA-binding transcrip 99.6 5.3E-14 1.2E-18 133.0 16.7 142 18-162 1-159 (204)
32 CHL00148 orf27 Ycf27; Reviewed 99.6 9.6E-14 2.1E-18 134.3 18.1 116 17-135 6-124 (240)
33 TIGR01387 cztR_silR_copR heavy 99.6 7.5E-14 1.6E-18 132.5 16.9 151 20-173 1-174 (218)
34 PLN03029 type-a response regul 99.6 4.9E-14 1.1E-18 139.3 16.2 118 17-135 8-149 (222)
35 PRK10701 DNA-binding transcrip 99.6 5.9E-14 1.3E-18 136.9 16.6 115 18-135 2-119 (240)
36 PRK13856 two-component respons 99.6 8.4E-14 1.8E-18 136.6 16.7 115 18-135 2-120 (241)
37 COG4567 Response regulator con 99.6 2.6E-14 5.5E-19 132.4 11.6 109 19-130 11-123 (182)
38 PRK15479 transcriptional regul 99.5 4.7E-13 1E-17 127.3 18.3 143 18-163 1-165 (221)
39 PRK10430 DNA-binding transcrip 99.5 2.6E-13 5.6E-18 134.2 16.6 117 17-134 1-123 (239)
40 PRK10710 DNA-binding transcrip 99.5 7.7E-13 1.7E-17 127.9 19.4 140 18-160 11-174 (240)
41 PRK09935 transcriptional regul 99.5 5.4E-13 1.2E-17 125.9 17.6 143 17-162 3-165 (210)
42 PRK10841 hybrid sensory kinase 99.5 6.4E-13 1.4E-17 156.0 17.2 117 16-135 800-920 (924)
43 PRK09390 fixJ response regulat 99.5 1.4E-12 3E-17 121.1 15.4 116 17-135 3-122 (202)
44 KOG0519 Sensory transduction h 99.5 3.4E-13 7.3E-18 155.6 13.6 115 16-132 665-784 (786)
45 PRK11107 hybrid sensory histid 99.5 7.1E-13 1.5E-17 153.6 15.9 114 17-133 667-786 (919)
46 PRK10923 glnG nitrogen regulat 99.5 1.5E-12 3.2E-17 141.3 17.3 116 17-135 3-122 (469)
47 COG3947 Response regulator con 99.5 2.2E-13 4.7E-18 137.8 9.7 112 18-134 1-116 (361)
48 PRK15347 two component system 99.4 1.2E-12 2.6E-17 152.0 16.8 114 17-133 690-811 (921)
49 TIGR02875 spore_0_A sporulatio 99.4 1.9E-12 4.1E-17 129.3 15.7 115 17-134 2-124 (262)
50 PRK15115 response regulator Gl 99.4 1.7E-12 3.6E-17 139.9 16.4 116 17-135 5-124 (444)
51 PRK11697 putative two-componen 99.4 2.2E-12 4.7E-17 126.2 15.7 113 17-134 1-118 (238)
52 PRK15369 two component system 99.4 5.3E-12 1.1E-16 117.7 17.6 144 16-162 2-165 (211)
53 PRK15411 rcsA colanic acid cap 99.4 1.5E-12 3.3E-17 127.5 14.5 151 18-172 1-163 (207)
54 PRK10651 transcriptional regul 99.4 5.1E-12 1.1E-16 119.3 17.2 145 16-163 5-172 (216)
55 PRK11361 acetoacetate metaboli 99.4 1.9E-12 4.2E-17 139.6 16.2 116 15-133 2-121 (457)
56 PRK11475 DNA-binding transcrip 99.4 1.2E-12 2.5E-17 128.8 12.8 139 30-171 3-159 (207)
57 PRK10365 transcriptional regul 99.4 1.6E-12 3.5E-17 139.4 14.9 116 17-135 5-124 (441)
58 PRK14084 two-component respons 99.4 3.1E-12 6.6E-17 126.1 15.7 113 18-135 1-119 (246)
59 PRK10403 transcriptional regul 99.4 8.9E-12 1.9E-16 117.3 17.8 142 17-161 6-168 (215)
60 PRK09581 pleD response regulat 99.4 1.6E-12 3.4E-17 137.6 13.2 114 17-134 155-274 (457)
61 PRK10100 DNA-binding transcrip 99.4 2.2E-12 4.7E-17 127.6 13.0 143 16-166 9-175 (216)
62 PRK13435 response regulator; P 99.4 5.9E-12 1.3E-16 114.0 14.4 115 15-135 3-122 (145)
63 PRK11466 hybrid sensory histid 99.4 3.4E-12 7.4E-17 148.5 15.9 117 17-135 681-801 (914)
64 TIGR02956 TMAO_torS TMAO reduc 99.4 4.1E-12 8.8E-17 148.4 16.0 114 17-133 702-822 (968)
65 TIGR02915 PEP_resp_reg putativ 99.4 4.7E-12 1E-16 136.4 15.0 111 20-134 1-119 (445)
66 PRK10610 chemotaxis regulatory 99.4 3E-11 6.6E-16 102.2 16.6 115 17-134 5-126 (129)
67 PRK09959 hybrid sensory histid 99.4 5.4E-12 1.2E-16 151.1 16.5 117 14-133 955-1075(1197)
68 PRK09581 pleD response regulat 99.4 1.3E-11 2.8E-16 130.7 17.5 115 18-135 3-123 (457)
69 TIGR01818 ntrC nitrogen regula 99.4 7.4E-12 1.6E-16 135.4 15.5 112 20-134 1-116 (463)
70 PRK12555 chemotaxis-specific m 99.4 9.7E-12 2.1E-16 129.8 15.4 112 18-132 1-128 (337)
71 PRK11091 aerobic respiration c 99.4 8.8E-12 1.9E-16 143.1 16.0 114 17-134 525-645 (779)
72 PRK00742 chemotaxis-specific m 99.3 2.6E-11 5.5E-16 127.4 15.5 102 16-120 2-110 (354)
73 COG2201 CheB Chemotaxis respon 99.3 5.2E-11 1.1E-15 124.8 14.6 101 17-120 1-108 (350)
74 PRK13558 bacterio-opsin activa 99.3 3.4E-11 7.4E-16 135.9 14.4 114 17-133 7-126 (665)
75 COG3707 AmiR Response regulato 99.2 2E-10 4.3E-15 110.8 12.3 117 17-136 5-125 (194)
76 PRK09191 two-component respons 99.2 5.7E-10 1.2E-14 110.6 14.9 114 17-134 137-254 (261)
77 cd00156 REC Signal receiver do 99.1 7.9E-10 1.7E-14 88.9 12.0 107 21-130 1-111 (113)
78 PRK13837 two-component VirA-li 99.1 1.1E-09 2.3E-14 127.4 15.4 115 17-135 697-815 (828)
79 PRK13557 histidine kinase; Pro 99.0 3.9E-09 8.4E-14 114.3 14.8 116 17-133 415-534 (540)
80 PRK10693 response regulator of 99.0 3E-09 6.5E-14 110.0 11.8 87 46-135 2-93 (303)
81 PRK15029 arginine decarboxylas 98.9 1.1E-08 2.5E-13 117.2 13.0 115 19-136 2-135 (755)
82 COG3279 LytT Response regulato 98.8 2.6E-08 5.7E-13 100.4 11.1 113 17-134 1-119 (244)
83 PRK11107 hybrid sensory histid 98.1 2.6E-05 5.5E-10 91.0 14.2 110 16-132 535-650 (919)
84 COG3706 PleD Response regulato 97.6 4.9E-05 1.1E-09 82.5 4.9 90 42-134 13-104 (435)
85 smart00448 REC cheY-homologous 97.6 0.00053 1.1E-08 47.5 7.8 54 18-73 1-54 (55)
86 PF06490 FleQ: Flagellar regul 97.3 0.002 4.4E-08 57.3 9.5 103 19-131 1-107 (109)
87 cd02071 MM_CoA_mut_B12_BD meth 96.7 0.027 5.8E-07 50.8 11.8 104 24-129 10-121 (122)
88 PRK02261 methylaspartate mutas 96.7 0.037 8.1E-07 51.3 12.9 114 16-132 2-134 (137)
89 TIGR00640 acid_CoA_mut_C methy 96.7 0.064 1.4E-06 49.5 14.2 114 18-133 3-128 (132)
90 PF00249 Myb_DNA-binding: Myb- 96.3 0.008 1.7E-07 45.4 4.9 48 306-356 1-48 (48)
91 PLN03162 golden-2 like transcr 96.0 0.026 5.5E-07 59.6 8.4 99 418-524 358-482 (526)
92 PF03709 OKR_DC_1_N: Orn/Lys/A 95.9 0.054 1.2E-06 48.5 9.1 103 29-133 5-113 (115)
93 cd02067 B12-binding B12 bindin 95.4 0.13 2.7E-06 45.8 9.7 92 24-117 10-109 (119)
94 PRK10618 phosphotransfer inter 94.9 0.12 2.5E-06 61.7 10.0 50 16-73 688-737 (894)
95 PRK15399 lysine decarboxylase 94.7 0.25 5.4E-06 57.4 11.8 114 18-136 1-125 (713)
96 TIGR01501 MthylAspMutase methy 94.6 0.55 1.2E-05 43.6 11.6 107 25-133 13-133 (134)
97 COG2185 Sbm Methylmalonyl-CoA 94.3 1.1 2.4E-05 42.1 13.0 113 16-133 11-138 (143)
98 PRK15400 lysine decarboxylase 94.1 0.34 7.4E-06 56.3 11.0 114 18-136 1-125 (714)
99 TIGR03815 CpaE_hom_Actino heli 94.0 0.15 3.2E-06 53.3 7.5 82 41-131 1-85 (322)
100 cd02072 Glm_B12_BD B12 binding 92.3 2.4 5.3E-05 39.1 11.7 101 26-129 12-127 (128)
101 COG4999 Uncharacterized domain 91.0 1.1 2.4E-05 40.9 7.8 104 17-128 11-121 (140)
102 PRK09426 methylmalonyl-CoA mut 91.0 3.1 6.7E-05 48.7 13.6 115 17-133 582-708 (714)
103 PF02310 B12-binding: B12 bind 91.0 1.9 4.2E-05 37.8 9.4 91 25-117 12-111 (121)
104 KOG1924 RhoA GTPase effector D 89.7 1.8 3.9E-05 50.3 9.8 28 512-539 610-637 (1102)
105 cd04728 ThiG Thiazole synthase 89.0 5.1 0.00011 40.9 11.5 109 18-134 94-226 (248)
106 cd02070 corrinoid_protein_B12- 87.2 4.9 0.00011 39.3 10.1 95 17-116 82-190 (201)
107 cd02069 methionine_synthase_B1 86.5 3.8 8.1E-05 40.8 8.9 99 17-117 88-201 (213)
108 PF10087 DUF2325: Uncharacteri 86.5 7.2 0.00016 33.6 9.6 84 19-107 1-93 (97)
109 PRK00208 thiG thiazole synthas 86.0 14 0.0003 38.0 12.6 109 18-134 94-226 (250)
110 PRK01130 N-acetylmannosamine-6 85.4 8.6 0.00019 37.9 10.8 83 31-117 108-202 (221)
111 PRK15320 transcriptional activ 84.2 6.5 0.00014 39.2 9.0 103 19-129 3-110 (251)
112 PRK05749 3-deoxy-D-manno-octul 83.8 7.9 0.00017 41.6 10.5 109 17-133 262-387 (425)
113 PF07688 KaiA: KaiA domain; I 83.5 4.4 9.6E-05 41.6 7.8 114 19-139 2-124 (283)
114 PRK00043 thiE thiamine-phospha 83.3 17 0.00036 35.1 11.7 72 41-116 104-187 (212)
115 PF01408 GFO_IDH_MocA: Oxidore 82.2 17 0.00036 31.6 10.2 102 18-131 1-109 (120)
116 COG0512 PabA Anthranilate/para 81.6 2.1 4.5E-05 42.2 4.5 77 17-95 1-81 (191)
117 TIGR02370 pyl_corrinoid methyl 80.3 7.9 0.00017 37.9 8.2 95 18-116 85-192 (197)
118 cd04729 NanE N-acetylmannosami 79.7 19 0.0004 35.5 10.7 81 33-117 114-206 (219)
119 PF02254 TrkA_N: TrkA-N domain 78.4 19 0.00042 31.1 9.3 89 18-116 22-115 (116)
120 PRK10128 2-keto-3-deoxy-L-rham 77.6 19 0.00041 37.3 10.3 95 32-129 8-110 (267)
121 PRK12704 phosphodiesterase; Pr 77.3 4.7 0.0001 45.5 6.3 46 90-135 251-298 (520)
122 PRK10558 alpha-dehydro-beta-de 77.2 18 0.00038 37.1 9.9 96 31-129 8-111 (256)
123 TIGR03151 enACPred_II putative 77.0 20 0.00043 37.6 10.5 82 33-117 101-190 (307)
124 PLN02871 UDP-sulfoquinovose:DA 76.5 24 0.00053 38.5 11.5 106 17-133 290-399 (465)
125 CHL00162 thiG thiamin biosynth 76.1 43 0.00092 34.7 12.0 113 18-134 108-240 (267)
126 PRK00278 trpC indole-3-glycero 76.0 47 0.001 34.0 12.7 86 27-117 146-240 (260)
127 TIGR03239 GarL 2-dehydro-3-deo 74.2 24 0.00051 36.1 9.9 94 33-129 3-104 (249)
128 TIGR03088 stp2 sugar transfera 73.2 22 0.00049 36.9 9.8 105 18-133 230-337 (374)
129 cd03823 GT1_ExpE7_like This fa 72.9 50 0.0011 32.9 11.9 74 51-133 254-328 (359)
130 PF05690 ThiG: Thiazole biosyn 72.7 16 0.00035 37.3 8.0 111 18-133 94-225 (247)
131 PRK15484 lipopolysaccharide 1, 72.3 60 0.0013 34.5 12.9 107 18-133 225-343 (380)
132 PRK14098 glycogen synthase; Pr 71.2 42 0.0009 37.4 11.8 111 17-133 336-450 (489)
133 TIGR00007 phosphoribosylformim 70.2 46 0.001 32.8 10.8 66 49-116 146-217 (230)
134 COG0157 NadC Nicotinate-nucleo 70.0 20 0.00044 37.3 8.3 92 19-115 160-260 (280)
135 cd04962 GT1_like_5 This family 69.8 33 0.00071 35.2 10.0 105 18-133 228-335 (371)
136 PRK06543 nicotinate-nucleotide 69.7 45 0.00097 34.9 10.8 92 19-115 161-263 (281)
137 cd04730 NPD_like 2-Nitropropan 69.5 57 0.0012 32.1 11.2 82 33-117 94-185 (236)
138 PRK07649 para-aminobenzoate/an 69.2 5.2 0.00011 39.1 3.7 74 20-95 2-79 (195)
139 PRK08385 nicotinate-nucleotide 68.6 41 0.00088 35.1 10.2 91 20-116 157-258 (278)
140 cd03820 GT1_amsD_like This fam 68.1 65 0.0014 31.5 11.3 107 17-133 209-318 (348)
141 cd03813 GT1_like_3 This family 68.0 37 0.0008 37.4 10.4 106 17-133 324-441 (475)
142 TIGR02311 HpaI 2,4-dihydroxyhe 67.6 45 0.00097 34.0 10.2 95 33-130 3-105 (249)
143 PF03060 NMO: Nitronate monoox 67.5 38 0.00083 35.8 10.0 82 33-117 128-219 (330)
144 PRK06559 nicotinate-nucleotide 67.3 29 0.00063 36.4 8.9 92 19-115 169-267 (290)
145 COG1748 LYS9 Saccharopine dehy 66.8 29 0.00062 37.9 9.0 100 17-123 1-104 (389)
146 TIGR01334 modD putative molybd 66.8 19 0.0004 37.5 7.3 93 19-116 158-262 (277)
147 PF00534 Glycos_transf_1: Glyc 66.7 46 0.00099 30.3 9.3 108 17-135 47-159 (172)
148 PRK15427 colanic acid biosynth 65.5 91 0.002 33.6 12.7 106 18-133 254-369 (406)
149 PRK01231 ppnK inorganic polyph 65.2 66 0.0014 33.7 11.1 101 15-134 2-118 (295)
150 TIGR02026 BchE magnesium-proto 65.0 50 0.0011 36.9 10.8 102 26-131 21-135 (497)
151 PRK07896 nicotinate-nucleotide 64.9 24 0.00052 37.0 7.7 92 20-116 173-273 (289)
152 PRK03659 glutathione-regulated 64.6 41 0.00088 38.6 10.2 52 62-117 463-518 (601)
153 cd03819 GT1_WavL_like This fam 64.4 1.1E+02 0.0023 31.0 12.4 107 17-132 216-328 (355)
154 cd04723 HisA_HisF Phosphoribos 64.1 28 0.00061 34.9 7.9 64 50-116 148-217 (233)
155 PRK09016 quinolinate phosphori 64.0 28 0.00061 36.6 8.0 93 19-116 181-279 (296)
156 PRK06774 para-aminobenzoate sy 63.9 7.9 0.00017 37.4 3.8 74 20-95 2-79 (191)
157 KOG1562 Spermidine synthase [A 63.8 22 0.00048 37.5 7.1 63 19-84 147-215 (337)
158 TIGR03449 mycothiol_MshA UDP-N 63.8 86 0.0019 33.0 11.9 106 18-133 253-367 (405)
159 PF01596 Methyltransf_3: O-met 63.7 32 0.0007 34.0 8.1 58 15-72 68-130 (205)
160 cd00331 IGPS Indole-3-glycerol 63.7 1.4E+02 0.0031 29.1 12.7 78 37-117 117-201 (217)
161 PRK10669 putative cation:proto 63.1 67 0.0014 36.3 11.5 26 88-115 508-533 (558)
162 COG0673 MviM Predicted dehydro 63.0 1.2E+02 0.0026 31.2 12.6 104 16-129 2-112 (342)
163 cd03801 GT1_YqgM_like This fam 62.8 94 0.002 30.4 11.3 105 18-133 231-340 (374)
164 PRK00748 1-(5-phosphoribosyl)- 62.4 33 0.00071 33.8 8.0 65 50-116 148-219 (233)
165 PRK05848 nicotinate-nucleotide 62.3 29 0.00063 36.0 7.7 92 20-116 155-256 (273)
166 cd06533 Glyco_transf_WecG_TagA 62.0 51 0.0011 31.5 8.9 75 17-96 46-132 (171)
167 PRK06978 nicotinate-nucleotide 61.9 40 0.00086 35.5 8.7 92 19-115 178-275 (294)
168 PRK03372 ppnK inorganic polyph 61.7 1E+02 0.0022 32.6 11.8 103 14-135 2-129 (306)
169 cd04726 KGPDC_HPS 3-Keto-L-gul 61.6 1.2E+02 0.0025 29.1 11.5 83 30-117 92-186 (202)
170 cd04727 pdxS PdxS is a subunit 61.6 54 0.0012 34.3 9.4 83 46-132 118-245 (283)
171 PF03602 Cons_hypoth95: Conser 61.6 29 0.00064 33.6 7.2 54 18-71 66-122 (183)
172 TIGR00693 thiE thiamine-phosph 61.1 57 0.0012 31.2 9.2 67 46-116 102-179 (196)
173 cd00564 TMP_TenI Thiamine mono 61.1 65 0.0014 30.1 9.5 68 46-117 101-178 (196)
174 PF01729 QRPTase_C: Quinolinat 60.9 23 0.00051 34.1 6.3 93 19-116 52-154 (169)
175 cd02068 radical_SAM_B12_BD B12 60.7 58 0.0013 29.0 8.6 100 29-130 4-109 (127)
176 cd03804 GT1_wbaZ_like This fam 60.6 59 0.0013 33.4 9.8 103 18-133 222-325 (351)
177 COG2022 ThiG Uncharacterized e 60.6 44 0.00095 34.2 8.3 96 18-117 101-211 (262)
178 cd03785 GT1_MurG MurG is an N- 60.4 1.2E+02 0.0027 30.9 12.1 55 79-133 262-323 (350)
179 PRK03708 ppnK inorganic polyph 60.3 61 0.0013 33.6 9.7 95 18-134 1-112 (277)
180 PF03808 Glyco_tran_WecB: Glyc 60.2 76 0.0016 30.2 9.7 74 17-95 48-133 (172)
181 TIGR00343 pyridoxal 5'-phospha 60.1 55 0.0012 34.3 9.2 55 78-132 184-248 (287)
182 PRK06106 nicotinate-nucleotide 60.1 30 0.00065 36.1 7.4 91 20-115 167-264 (281)
183 TIGR00642 mmCoA_mut_beta methy 59.6 61 0.0013 37.6 10.4 109 18-130 495-614 (619)
184 PRK14974 cell division protein 59.6 88 0.0019 33.5 11.0 102 17-121 168-291 (336)
185 PRK00726 murG undecaprenyldiph 59.3 1.4E+02 0.003 30.9 12.4 64 64-133 253-323 (357)
186 cd02065 B12-binding_like B12 b 58.9 37 0.0008 29.6 6.9 50 24-75 10-62 (125)
187 cd04732 HisA HisA. Phosphorib 58.9 96 0.0021 30.5 10.6 66 49-116 147-218 (234)
188 cd03795 GT1_like_4 This family 58.8 1.8E+02 0.004 29.2 12.9 109 17-134 218-332 (357)
189 cd03818 GT1_ExpC_like This fam 58.6 76 0.0016 33.6 10.4 76 49-134 290-366 (396)
190 PRK10742 putative methyltransf 58.5 47 0.001 34.2 8.3 97 17-117 110-218 (250)
191 PRK03958 tRNA 2'-O-methylase; 58.3 97 0.0021 30.3 10.0 76 18-96 32-111 (176)
192 TIGR00734 hisAF_rel hisA/hisF 58.1 50 0.0011 32.9 8.4 67 48-116 141-212 (221)
193 PLN02775 Probable dihydrodipic 58.0 2.1E+02 0.0046 30.0 13.2 102 17-122 11-139 (286)
194 PRK06895 putative anthranilate 57.8 13 0.00029 35.8 4.1 31 18-48 2-32 (190)
195 PRK11889 flhF flagellar biosyn 57.7 80 0.0017 35.0 10.3 104 17-121 269-389 (436)
196 PRK09922 UDP-D-galactose:(gluc 57.3 1.7E+02 0.0038 30.4 12.8 109 17-135 210-325 (359)
197 PF04321 RmlD_sub_bind: RmlD s 57.0 17 0.00037 37.3 5.0 55 18-74 1-62 (286)
198 PLN02716 nicotinate-nucleotide 56.9 46 0.001 35.2 8.2 94 19-115 172-288 (308)
199 TIGR00566 trpG_papA glutamine 56.9 13 0.00029 35.9 4.0 73 20-95 2-79 (188)
200 PRK08007 para-aminobenzoate sy 56.7 12 0.00026 36.2 3.6 74 20-95 2-79 (187)
201 PRK13587 1-(5-phosphoribosyl)- 56.3 56 0.0012 32.9 8.5 65 51-116 151-220 (234)
202 PRK05637 anthranilate synthase 56.1 18 0.00039 35.8 4.8 49 18-69 2-50 (208)
203 PRK12724 flagellar biosynthesi 55.9 1.2E+02 0.0025 33.8 11.3 103 17-121 252-371 (432)
204 CHL00194 ycf39 Ycf39; Provisio 55.6 1.2E+02 0.0026 31.2 11.1 69 18-94 1-70 (317)
205 PRK07428 nicotinate-nucleotide 55.0 53 0.0012 34.4 8.3 92 19-116 168-270 (288)
206 PRK03562 glutathione-regulated 54.6 90 0.002 36.0 10.8 88 18-115 424-516 (621)
207 PRK02155 ppnK NAD(+)/NADH kina 54.5 1.2E+02 0.0026 31.7 10.7 99 18-135 6-120 (291)
208 PRK07239 bifunctional uroporph 54.4 1.1E+02 0.0023 32.9 10.7 149 16-175 141-335 (381)
209 cd05844 GT1_like_7 Glycosyltra 54.2 1.7E+02 0.0037 29.8 11.9 107 17-133 219-335 (367)
210 COG0134 TrpC Indole-3-glycerol 53.8 94 0.002 32.1 9.6 81 31-117 146-236 (254)
211 COG4122 Predicted O-methyltran 53.6 52 0.0011 33.2 7.6 77 17-95 84-165 (219)
212 cd03806 GT1_ALG11_like This fa 53.5 1.4E+02 0.003 32.4 11.5 109 17-133 273-391 (419)
213 COG0742 N6-adenine-specific me 53.4 40 0.00088 33.2 6.6 54 17-71 66-122 (187)
214 PRK15490 Vi polysaccharide bio 53.3 1.9E+02 0.004 33.4 12.7 102 17-129 429-533 (578)
215 PRK09590 celB cellobiose phosp 53.3 74 0.0016 28.2 7.7 92 18-129 2-101 (104)
216 PRK05458 guanosine 5'-monophos 52.7 2.2E+02 0.0048 30.4 12.6 96 19-117 113-230 (326)
217 cd04949 GT1_gtfA_like This fam 52.5 98 0.0021 32.0 9.9 66 64-134 279-345 (372)
218 PLN02316 synthase/transferase 52.1 1.2E+02 0.0027 37.3 11.7 112 17-134 869-998 (1036)
219 PLN02591 tryptophan synthase 51.7 1.2E+02 0.0025 31.2 10.0 98 19-118 109-219 (250)
220 TIGR01133 murG undecaprenyldip 51.6 2.2E+02 0.0048 29.0 12.3 55 79-133 260-320 (348)
221 cd03825 GT1_wcfI_like This fam 51.6 45 0.00098 33.7 7.1 75 18-95 1-83 (365)
222 PRK05670 anthranilate synthase 51.4 18 0.00039 34.9 3.9 74 20-95 2-79 (189)
223 PRK04302 triosephosphate isome 51.4 1.7E+02 0.0037 29.0 10.9 79 36-117 109-202 (223)
224 KOG2236 Uncharacterized conser 51.3 46 0.001 36.9 7.2 13 348-360 329-341 (483)
225 PF02254 TrkA_N: TrkA-N domain 51.1 1.1E+02 0.0023 26.3 8.5 73 20-101 1-75 (116)
226 TIGR00078 nadC nicotinate-nucl 50.9 83 0.0018 32.5 8.8 92 19-116 150-249 (265)
227 TIGR02149 glgA_Coryne glycogen 50.8 1.7E+02 0.0037 30.3 11.4 106 18-133 230-351 (388)
228 PRK13566 anthranilate synthase 50.6 40 0.00087 39.7 7.2 78 16-96 525-606 (720)
229 PRK13125 trpA tryptophan synth 50.6 1.5E+02 0.0032 29.9 10.5 85 29-117 117-214 (244)
230 TIGR01761 thiaz-red thiazoliny 50.4 3E+02 0.0064 29.6 13.2 101 17-130 3-110 (343)
231 PRK01911 ppnK inorganic polyph 50.2 1.6E+02 0.0035 30.8 11.0 99 18-135 1-121 (292)
232 cd06338 PBP1_ABC_ligand_bindin 50.2 1.7E+02 0.0036 30.0 11.1 74 18-96 142-230 (345)
233 PRK07028 bifunctional hexulose 50.2 2.6E+02 0.0056 30.6 13.1 98 32-133 98-211 (430)
234 PRK01372 ddl D-alanine--D-alan 49.4 31 0.00067 35.3 5.5 54 16-71 3-64 (304)
235 PRK13789 phosphoribosylamine-- 49.3 2.1E+02 0.0045 31.5 12.1 61 16-80 3-84 (426)
236 PRK07695 transcriptional regul 49.2 2.5E+02 0.0055 27.1 12.8 66 46-115 101-175 (201)
237 TIGR01037 pyrD_sub1_fam dihydr 49.1 1.7E+02 0.0037 30.1 11.0 34 81-114 224-260 (300)
238 CHL00101 trpG anthranilate syn 49.0 20 0.00044 34.6 3.8 48 20-69 2-49 (190)
239 PRK12726 flagellar biosynthesi 48.9 1.3E+02 0.0028 33.2 10.1 104 17-121 234-354 (407)
240 cd04724 Tryptophan_synthase_al 48.9 67 0.0015 32.4 7.7 52 78-129 63-123 (242)
241 cd04951 GT1_WbdM_like This fam 48.9 1.2E+02 0.0025 30.6 9.6 103 17-132 219-324 (360)
242 PF02581 TMP-TENI: Thiamine mo 48.8 89 0.0019 29.8 8.2 69 44-116 99-176 (180)
243 cd00452 KDPG_aldolase KDPG and 48.5 1.3E+02 0.0029 28.9 9.5 75 36-117 92-171 (190)
244 PF04131 NanE: Putative N-acet 48.4 1.8E+02 0.0039 28.9 10.2 83 31-117 82-173 (192)
245 PRK04128 1-(5-phosphoribosyl)- 48.0 81 0.0018 31.6 8.1 66 49-116 144-210 (228)
246 PRK05567 inosine 5'-monophosph 47.8 1.4E+02 0.0031 33.3 10.7 97 17-117 240-360 (486)
247 PRK06731 flhF flagellar biosyn 47.6 1.7E+02 0.0037 30.3 10.5 101 18-120 104-222 (270)
248 PRK03692 putative UDP-N-acetyl 47.6 1.3E+02 0.0027 30.8 9.4 73 17-94 105-188 (243)
249 PF00977 His_biosynth: Histidi 47.6 74 0.0016 31.8 7.7 67 49-116 148-219 (229)
250 PRK04148 hypothetical protein; 47.2 1.5E+02 0.0033 27.6 9.0 55 17-75 17-71 (134)
251 PRK11359 cyclic-di-GMP phospho 47.0 1.3E+02 0.0028 34.8 10.7 98 30-130 680-793 (799)
252 PRK05718 keto-hydroxyglutarate 46.8 1.8E+02 0.0039 29.0 10.2 91 33-127 8-103 (212)
253 PRK09522 bifunctional glutamin 46.8 27 0.00058 39.6 4.9 76 18-95 2-84 (531)
254 PRK11840 bifunctional sulfur c 46.8 2.9E+02 0.0062 29.7 12.1 113 18-134 168-300 (326)
255 cd03799 GT1_amsK_like This is 46.7 1.6E+02 0.0034 29.6 10.1 106 18-133 211-326 (355)
256 PF07830 PP2C_C: Protein serin 46.7 28 0.00061 29.8 3.8 39 496-539 27-65 (81)
257 TIGR03590 PseG pseudaminic aci 46.6 1.1E+02 0.0025 31.2 9.1 73 18-99 32-114 (279)
258 PRK14099 glycogen synthase; Pr 46.4 1.3E+02 0.0027 33.6 10.1 109 18-132 325-442 (485)
259 PRK06096 molybdenum transport 46.3 72 0.0016 33.4 7.6 92 20-116 160-263 (284)
260 cd03812 GT1_CapH_like This fam 46.1 1.8E+02 0.0038 29.5 10.4 106 17-134 223-331 (358)
261 TIGR00262 trpA tryptophan synt 45.7 2.8E+02 0.0061 28.3 11.7 99 20-118 119-228 (256)
262 cd03808 GT1_cap1E_like This fa 45.4 1.4E+02 0.0031 29.2 9.5 64 64-133 264-328 (359)
263 cd01424 MGS_CPS_II Methylglyox 45.4 1.8E+02 0.0039 25.2 9.0 27 22-48 7-33 (110)
264 smart00426 TEA TEA domain. 45.4 16 0.00034 30.3 2.0 18 308-325 5-22 (68)
265 cd03816 GT1_ALG1_like This fam 45.3 3.3E+02 0.0071 29.3 12.8 106 18-134 270-381 (415)
266 TIGR02855 spore_yabG sporulati 45.3 1.3E+02 0.0028 31.4 9.1 55 14-70 101-160 (283)
267 PLN02274 inosine-5'-monophosph 45.2 1.6E+02 0.0035 33.3 10.6 68 46-117 296-380 (505)
268 PRK02645 ppnK inorganic polyph 45.2 1.6E+02 0.0035 30.9 10.1 99 17-133 3-114 (305)
269 PRK05703 flhF flagellar biosyn 45.1 1.7E+02 0.0036 32.3 10.6 103 17-120 251-368 (424)
270 PLN02335 anthranilate synthase 45.0 23 0.0005 35.4 3.6 52 17-70 18-69 (222)
271 PRK05458 guanosine 5'-monophos 44.8 1.4E+02 0.003 31.9 9.6 64 51-115 100-166 (326)
272 PLN02275 transferase, transfer 44.6 3.1E+02 0.0068 28.9 12.4 104 17-131 261-370 (371)
273 TIGR02082 metH 5-methyltetrahy 44.5 99 0.0021 38.6 9.5 110 18-132 733-857 (1178)
274 cd03807 GT1_WbnK_like This fam 44.3 1.9E+02 0.0042 28.5 10.2 63 64-134 269-332 (365)
275 PRK05581 ribulose-phosphate 3- 44.1 2.3E+02 0.005 27.4 10.5 80 34-117 102-198 (220)
276 PRK08072 nicotinate-nucleotide 43.8 1.5E+02 0.0032 30.9 9.4 89 19-116 160-259 (277)
277 PRK00941 acetyl-CoA decarbonyl 43.8 3.2E+02 0.007 32.7 13.0 114 17-134 237-383 (781)
278 TIGR03061 pip_yhgE_Nterm YhgE/ 43.5 60 0.0013 30.4 6.0 51 16-69 42-102 (164)
279 PRK13609 diacylglycerol glucos 43.5 3.1E+02 0.0066 28.8 12.0 103 18-133 231-337 (380)
280 TIGR02095 glgA glycogen/starch 43.4 2.7E+02 0.0058 30.4 11.9 106 18-133 321-436 (473)
281 PRK05993 short chain dehydroge 43.4 70 0.0015 32.1 6.9 56 16-73 3-58 (277)
282 PRK13143 hisH imidazole glycer 42.8 57 0.0012 31.8 6.0 44 18-69 1-44 (200)
283 PRK01033 imidazole glycerol ph 42.8 1.1E+02 0.0023 31.2 8.2 65 50-116 154-225 (258)
284 PRK13111 trpA tryptophan synth 42.6 74 0.0016 32.7 7.0 53 78-130 75-137 (258)
285 PRK08649 inosine 5-monophospha 42.6 2.8E+02 0.0061 30.1 11.6 64 49-116 142-214 (368)
286 PF05582 Peptidase_U57: YabG p 42.5 1.3E+02 0.0027 31.7 8.5 56 13-70 101-161 (287)
287 PRK06843 inosine 5-monophospha 42.5 2.6E+02 0.0056 30.8 11.4 98 17-117 165-285 (404)
288 cd04722 TIM_phosphate_binding 42.0 1.9E+02 0.0042 26.4 9.2 54 62-116 135-198 (200)
289 cd03798 GT1_wlbH_like This fam 41.9 1.7E+02 0.0038 28.7 9.4 74 51-134 270-344 (377)
290 PRK04539 ppnK inorganic polyph 41.6 2.7E+02 0.0058 29.2 11.0 96 18-135 6-125 (296)
291 cd01743 GATase1_Anthranilate_S 41.6 52 0.0011 31.3 5.4 48 20-69 1-48 (184)
292 PRK10423 transcriptional repre 41.5 1.3E+02 0.0028 30.5 8.6 64 30-96 75-144 (327)
293 PLN02591 tryptophan synthase 41.5 85 0.0018 32.2 7.1 54 78-131 65-127 (250)
294 PRK14569 D-alanyl-alanine synt 41.2 1.2E+02 0.0026 31.3 8.4 55 16-72 2-65 (296)
295 cd03802 GT1_AviGT4_like This f 41.0 3.6E+02 0.0079 26.8 11.7 73 49-132 233-306 (335)
296 cd00331 IGPS Indole-3-glycerol 40.8 2.2E+02 0.0048 27.7 9.8 50 66-116 48-100 (217)
297 PRK03378 ppnK inorganic polyph 40.7 2.5E+02 0.0053 29.4 10.6 99 18-135 6-120 (292)
298 KOG4175 Tryptophan synthase al 40.6 46 0.00099 33.4 4.8 39 88-126 95-139 (268)
299 PRK12723 flagellar biosynthesi 40.5 3E+02 0.0064 30.1 11.5 103 17-121 206-324 (388)
300 PF03102 NeuB: NeuB family; I 40.5 69 0.0015 32.7 6.3 74 29-107 57-132 (241)
301 cd06282 PBP1_GntR_like_2 Ligan 40.1 1.6E+02 0.0034 28.5 8.7 63 29-96 17-87 (266)
302 cd06346 PBP1_ABC_ligand_bindin 40.0 2.2E+02 0.0047 29.0 10.0 66 31-101 155-231 (312)
303 cd00381 IMPDH IMPDH: The catal 40.0 2.7E+02 0.0059 29.4 10.9 95 17-116 106-225 (325)
304 PRK09140 2-dehydro-3-deoxy-6-p 39.9 1.5E+02 0.0033 29.3 8.5 90 35-127 5-99 (206)
305 cd06296 PBP1_CatR_like Ligand- 39.9 1.4E+02 0.003 29.1 8.3 63 28-96 16-86 (270)
306 cd03805 GT1_ALG2_like This fam 39.7 3.3E+02 0.0071 28.2 11.5 106 17-133 245-363 (392)
307 cd08187 BDH Butanol dehydrogen 39.7 1.5E+02 0.0032 31.9 9.0 62 18-85 29-104 (382)
308 PRK13146 hisH imidazole glycer 39.6 67 0.0015 31.6 5.9 45 17-69 1-47 (209)
309 PRK00025 lpxB lipid-A-disaccha 39.5 2.9E+02 0.0063 28.8 11.1 23 111-133 318-340 (380)
310 PTZ00314 inosine-5'-monophosph 39.4 2E+02 0.0044 32.4 10.3 30 88-117 344-373 (495)
311 PRK13586 1-(5-phosphoribosyl)- 39.4 1.4E+02 0.003 30.2 8.2 66 49-116 147-217 (232)
312 PLN02819 lysine-ketoglutarate 39.4 2.8E+02 0.0061 34.3 12.1 105 17-128 569-689 (1042)
313 PRK02649 ppnK inorganic polyph 39.4 2.5E+02 0.0053 29.7 10.4 99 18-135 2-125 (305)
314 PRK00994 F420-dependent methyl 39.3 2E+02 0.0043 29.7 9.1 78 39-120 29-118 (277)
315 PF00218 IGPS: Indole-3-glycer 39.3 1.7E+02 0.0037 30.1 8.9 84 31-117 148-238 (254)
316 cd04731 HisF The cyclase subun 39.2 1.3E+02 0.0028 30.0 8.0 69 47-117 26-100 (243)
317 PRK06849 hypothetical protein; 39.1 3E+02 0.0066 29.3 11.3 41 15-55 2-42 (389)
318 PRK07259 dihydroorotate dehydr 39.1 3.3E+02 0.0071 28.1 11.2 35 80-114 223-260 (301)
319 PRK05742 nicotinate-nucleotide 39.1 1.5E+02 0.0033 30.9 8.6 91 20-116 163-260 (277)
320 cd01573 modD_like ModD; Quinol 39.0 2E+02 0.0044 29.7 9.6 91 20-116 155-257 (272)
321 PF06283 ThuA: Trehalose utili 38.9 72 0.0016 31.2 6.0 52 19-74 1-63 (217)
322 TIGR03704 PrmC_rel_meth putati 38.7 2.8E+02 0.0061 28.1 10.4 51 18-71 111-161 (251)
323 PRK07765 para-aminobenzoate sy 38.5 39 0.00086 33.4 4.1 32 18-49 1-32 (214)
324 PF00389 2-Hacid_dh: D-isomer 38.5 2.7E+02 0.0059 24.8 9.3 95 20-126 1-99 (133)
325 cd01572 QPRTase Quinolinate ph 38.4 2.2E+02 0.0048 29.4 9.7 90 19-115 154-252 (268)
326 TIGR00853 pts-lac PTS system, 38.3 1.7E+02 0.0038 25.2 7.6 73 17-96 3-83 (95)
327 PRK00654 glgA glycogen synthas 38.3 2.5E+02 0.0055 30.7 10.8 107 17-133 311-427 (466)
328 TIGR00262 trpA tryptophan synt 38.2 1.1E+02 0.0023 31.4 7.3 53 78-130 73-135 (256)
329 PRK01362 putative translaldola 38.2 2E+02 0.0044 28.7 9.1 80 34-118 94-185 (214)
330 cd03811 GT1_WabH_like This fam 37.9 2.2E+02 0.0047 27.8 9.3 62 64-131 264-326 (353)
331 KOG1924 RhoA GTPase effector D 37.7 4.5E+02 0.0098 31.6 12.6 8 62-69 222-229 (1102)
332 cd05212 NAD_bind_m-THF_DH_Cycl 37.6 63 0.0014 30.1 5.1 56 16-75 27-83 (140)
333 PF11965 DUF3479: Domain of un 37.5 1.7E+02 0.0036 28.3 8.0 107 19-129 2-124 (164)
334 TIGR00064 ftsY signal recognit 37.4 2.7E+02 0.0059 28.7 10.2 54 17-72 100-163 (272)
335 cd03814 GT1_like_2 This family 37.1 3.2E+02 0.0069 27.1 10.6 75 49-133 256-331 (364)
336 cd02911 arch_FMN Archeal FMN-b 37.0 4.5E+02 0.0097 26.4 11.7 66 49-116 153-219 (233)
337 TIGR03765 ICE_PFL_4695 integra 37.0 2.1E+02 0.0046 25.7 7.9 69 18-95 25-100 (105)
338 COG5012 Predicted cobalamin bi 37.0 54 0.0012 33.2 4.7 84 30-117 121-213 (227)
339 TIGR01306 GMP_reduct_2 guanosi 36.8 5.2E+02 0.011 27.6 12.3 96 19-117 110-227 (321)
340 TIGR01425 SRP54_euk signal rec 36.7 2.3E+02 0.0049 31.5 9.9 54 17-72 128-191 (429)
341 COG2200 Rtn c-di-GMP phosphodi 36.7 2.1E+02 0.0046 28.9 9.2 98 29-129 137-250 (256)
342 TIGR00736 nifR3_rel_arch TIM-b 36.5 3.7E+02 0.0081 27.2 10.8 62 52-116 152-219 (231)
343 PRK07206 hypothetical protein; 36.5 3.2E+02 0.0068 29.3 11.0 29 17-46 2-30 (416)
344 cd08176 LPO Lactadehyde:propan 36.5 1.9E+02 0.004 31.1 9.2 63 18-86 29-104 (377)
345 cd06342 PBP1_ABC_LIVBP_like Ty 36.3 3.8E+02 0.0083 27.0 11.1 64 19-87 137-211 (334)
346 PRK04128 1-(5-phosphoribosyl)- 36.3 2.6E+02 0.0055 28.1 9.6 67 48-117 30-102 (228)
347 TIGR01302 IMP_dehydrog inosine 36.2 4.2E+02 0.0091 29.4 12.1 98 17-117 236-356 (450)
348 TIGR00696 wecB_tagA_cpsF bacte 36.2 1.1E+02 0.0025 29.5 6.8 66 17-87 48-121 (177)
349 cd05013 SIS_RpiR RpiR-like pro 36.1 2.5E+02 0.0055 24.2 8.6 96 18-120 14-114 (139)
350 PRK09490 metH B12-dependent me 36.0 1.3E+02 0.0028 37.7 8.7 111 17-132 751-876 (1229)
351 PRK00811 spermidine synthase; 36.0 1.2E+02 0.0026 31.2 7.4 55 18-75 101-162 (283)
352 PRK13170 hisH imidazole glycer 35.9 88 0.0019 30.4 6.1 44 18-69 1-44 (196)
353 cd05014 SIS_Kpsf KpsF-like pro 35.9 97 0.0021 27.1 5.9 87 26-119 11-100 (128)
354 cd06318 PBP1_ABC_sugar_binding 35.8 1.8E+02 0.0039 28.6 8.4 62 30-96 18-88 (282)
355 PRK10060 RNase II stability mo 35.7 3.2E+02 0.0069 31.6 11.5 100 28-130 541-656 (663)
356 PRK02083 imidazole glycerol ph 35.6 2.9E+02 0.0064 27.7 10.0 76 50-127 155-243 (253)
357 cd01568 QPRTase_NadC Quinolina 35.5 1.2E+02 0.0027 31.2 7.3 91 19-116 153-254 (269)
358 COG3836 HpcH 2,4-dihydroxyhept 35.5 2.6E+02 0.0056 28.8 9.2 87 32-122 7-101 (255)
359 cd08179 NADPH_BDH NADPH-depend 35.5 1.6E+02 0.0036 31.5 8.6 62 18-85 24-99 (375)
360 TIGR00875 fsa_talC_mipB fructo 35.4 1.8E+02 0.004 29.0 8.3 79 34-117 94-185 (213)
361 PLN02589 caffeoyl-CoA O-methyl 35.3 1.6E+02 0.0034 30.1 8.0 56 17-72 104-165 (247)
362 PRK06182 short chain dehydroge 35.1 1.7E+02 0.0037 29.1 8.1 55 17-73 3-57 (273)
363 cd06281 PBP1_LacI_like_5 Ligan 35.0 1.8E+02 0.0039 28.4 8.3 65 28-97 16-88 (269)
364 KOG0850 Transcription factor D 35.0 2.1E+02 0.0046 29.2 8.5 61 299-365 119-183 (245)
365 TIGR00735 hisF imidazoleglycer 34.7 1.9E+02 0.0041 29.3 8.4 70 47-117 29-103 (254)
366 PRK05693 short chain dehydroge 34.7 1.9E+02 0.004 28.8 8.4 75 18-96 2-80 (274)
367 PRK05752 uroporphyrinogen-III 34.5 3.5E+02 0.0076 27.1 10.4 103 16-130 129-249 (255)
368 PLN02476 O-methyltransferase 34.5 1.6E+02 0.0036 30.6 8.0 56 17-72 143-203 (278)
369 PRK08857 para-aminobenzoate sy 34.4 42 0.00091 32.5 3.5 73 20-95 2-79 (193)
370 TIGR00095 RNA methyltransferas 34.3 1.4E+02 0.003 28.9 7.1 67 19-86 74-143 (189)
371 TIGR01305 GMP_reduct_1 guanosi 34.2 1.1E+02 0.0025 32.8 6.9 55 63-117 121-178 (343)
372 cd04946 GT1_AmsK_like This fam 34.2 5.5E+02 0.012 27.5 12.4 107 18-133 264-376 (407)
373 TIGR01304 IMP_DH_rel_2 IMP deh 34.1 4.5E+02 0.0098 28.6 11.6 63 49-115 143-214 (369)
374 cd06275 PBP1_PurR Ligand-bindi 34.1 2E+02 0.0043 27.9 8.4 66 29-97 17-88 (269)
375 PRK01395 V-type ATP synthase s 34.1 75 0.0016 28.2 4.7 74 16-96 2-78 (104)
376 PLN02366 spermidine synthase 34.0 1.7E+02 0.0036 30.9 8.1 56 18-75 116-177 (308)
377 PRK14024 phosphoribosyl isomer 34.0 2.1E+02 0.0046 28.7 8.6 75 51-127 149-238 (241)
378 PRK14722 flhF flagellar biosyn 34.0 2.2E+02 0.0047 31.0 9.2 84 18-103 168-262 (374)
379 TIGR02472 sucr_P_syn_N sucrose 34.0 4.2E+02 0.0092 28.6 11.6 78 50-133 327-405 (439)
380 PRK05718 keto-hydroxyglutarate 33.8 3.9E+02 0.0084 26.7 10.3 95 20-118 19-136 (212)
381 cd06273 PBP1_GntR_like_1 This 33.8 1.9E+02 0.0041 28.1 8.1 62 29-96 17-86 (268)
382 cd03794 GT1_wbuB_like This fam 33.6 3.8E+02 0.0083 26.5 10.5 76 49-133 284-364 (394)
383 PF07279 DUF1442: Protein of u 33.6 2.2E+02 0.0047 28.9 8.3 62 19-87 71-137 (218)
384 PF05991 NYN_YacP: YacP-like N 33.5 3.6E+02 0.0078 25.7 9.7 97 27-134 25-133 (166)
385 cd06292 PBP1_LacI_like_10 Liga 33.4 1.5E+02 0.0031 29.1 7.3 66 29-96 17-91 (273)
386 PLN02781 Probable caffeoyl-CoA 33.3 1.7E+02 0.0036 29.3 7.7 57 17-73 93-154 (234)
387 cd03817 GT1_UGDG_like This fam 33.2 4.1E+02 0.0089 26.3 10.6 73 50-133 269-342 (374)
388 PRK04180 pyridoxal biosynthesi 32.9 1.1E+02 0.0025 32.1 6.5 56 78-133 190-255 (293)
389 cd03114 ArgK-like The function 32.9 1.1E+02 0.0024 28.3 6.0 42 50-97 80-123 (148)
390 PF00532 Peripla_BP_1: Peripla 32.9 1.6E+02 0.0035 29.9 7.7 63 30-97 20-88 (279)
391 PRK06843 inosine 5-monophospha 32.8 1.5E+02 0.0033 32.6 7.8 62 53-116 157-221 (404)
392 PLN02949 transferase, transfer 32.8 2.7E+02 0.0058 31.0 9.8 109 17-133 303-421 (463)
393 PRK14967 putative methyltransf 32.7 3.5E+02 0.0076 26.4 9.8 48 19-71 61-109 (223)
394 PF09936 Methyltrn_RNA_4: SAM- 32.6 2.9E+02 0.0064 27.2 8.8 98 18-121 43-162 (185)
395 PRK06769 hypothetical protein; 32.6 3.9E+02 0.0085 25.2 9.8 80 34-118 37-138 (173)
396 cd06358 PBP1_NHase Type I peri 32.6 2.2E+02 0.0047 29.2 8.6 74 18-96 133-221 (333)
397 PF00497 SBP_bac_3: Bacterial 32.5 1.5E+02 0.0032 27.6 6.9 102 16-136 109-210 (225)
398 cd00429 RPE Ribulose-5-phospha 32.4 3.3E+02 0.007 25.9 9.4 79 34-117 98-194 (211)
399 TIGR01303 IMP_DH_rel_1 IMP deh 32.4 1.2E+02 0.0025 34.1 7.0 65 48-115 224-292 (475)
400 COG1609 PurR Transcriptional r 32.3 1.4E+02 0.0031 31.3 7.4 65 28-96 75-145 (333)
401 KOG1203 Predicted dehydrogenas 32.2 1.2E+02 0.0026 33.5 6.8 73 12-87 74-147 (411)
402 cd06267 PBP1_LacI_sugar_bindin 32.2 3.1E+02 0.0068 26.0 9.2 61 31-97 19-87 (264)
403 CHL00200 trpA tryptophan synth 32.2 1.4E+02 0.003 30.8 7.0 52 78-129 78-138 (263)
404 PLN02274 inosine-5'-monophosph 32.0 1.2E+02 0.0026 34.3 7.0 66 49-116 248-316 (505)
405 TIGR01302 IMP_dehydrog inosine 31.9 1.3E+02 0.0028 33.3 7.2 61 51-115 227-291 (450)
406 PF14097 SpoVAE: Stage V sporu 31.8 1.8E+02 0.0038 28.5 7.0 68 20-87 3-78 (180)
407 PRK13111 trpA tryptophan synth 31.8 3E+02 0.0066 28.2 9.4 96 20-118 121-229 (258)
408 PF01564 Spermine_synth: Sperm 31.8 96 0.0021 31.4 5.7 56 18-75 101-162 (246)
409 cd06284 PBP1_LacI_like_6 Ligan 31.7 2.3E+02 0.005 27.3 8.3 62 29-96 17-85 (267)
410 cd01948 EAL EAL domain. This d 31.6 1.8E+02 0.004 27.8 7.5 87 32-121 136-238 (240)
411 cd06279 PBP1_LacI_like_3 Ligan 31.6 1.8E+02 0.004 28.8 7.7 62 29-96 22-87 (283)
412 cd06271 PBP1_AglR_RafR_like Li 31.5 2.4E+02 0.0053 27.1 8.5 62 29-96 21-90 (268)
413 PF05768 DUF836: Glutaredoxin- 31.5 1.1E+02 0.0023 25.4 5.0 66 49-129 15-81 (81)
414 smart00052 EAL Putative diguan 31.4 2.4E+02 0.0053 27.0 8.4 87 32-121 137-239 (241)
415 PLN02939 transferase, transfer 31.4 3.4E+02 0.0075 33.3 10.9 110 18-133 809-930 (977)
416 TIGR03128 RuMP_HxlA 3-hexulose 31.2 4.8E+02 0.01 25.0 13.5 84 30-116 91-185 (206)
417 COG0300 DltE Short-chain dehyd 31.2 2.4E+02 0.0051 29.3 8.5 71 14-87 3-79 (265)
418 cd03800 GT1_Sucrose_synthase T 31.2 4.8E+02 0.01 26.7 11.0 75 49-133 292-367 (398)
419 cd00956 Transaldolase_FSA Tran 31.2 2.9E+02 0.0064 27.4 8.9 78 36-117 96-185 (211)
420 PF05368 NmrA: NmrA-like famil 31.1 3.1E+02 0.0068 26.5 9.1 91 20-117 1-101 (233)
421 cd06326 PBP1_STKc_like Type I 31.0 3.9E+02 0.0084 27.0 10.2 62 31-97 154-226 (336)
422 cd08181 PPD-like 1,3-propanedi 31.0 2.8E+02 0.006 29.6 9.3 62 18-85 26-101 (357)
423 PF13659 Methyltransf_26: Meth 31.0 1.5E+02 0.0032 25.3 6.1 55 18-74 24-81 (117)
424 PRK14114 1-(5-phosphoribosyl)- 30.9 2E+02 0.0042 29.3 7.8 67 49-116 145-222 (241)
425 TIGR00735 hisF imidazoleglycer 30.9 3.8E+02 0.0082 27.0 9.9 75 51-127 158-245 (254)
426 PRK12656 fructose-6-phosphate 30.8 2.8E+02 0.0061 28.0 8.8 78 35-116 99-188 (222)
427 TIGR03569 NeuB_NnaB N-acetylne 30.6 1.9E+02 0.0042 30.8 8.0 74 29-107 77-152 (329)
428 PF03328 HpcH_HpaI: HpcH/HpaI 30.6 2.7E+02 0.0059 27.3 8.6 81 47-129 7-104 (221)
429 cd02809 alpha_hydroxyacid_oxid 30.5 4.8E+02 0.01 27.0 10.8 69 46-117 179-256 (299)
430 TIGR01815 TrpE-clade3 anthrani 30.5 1.3E+02 0.0029 35.4 7.3 77 16-95 515-595 (717)
431 cd01541 PBP1_AraR Ligand-bindi 30.2 2.3E+02 0.005 27.7 8.1 67 28-96 16-91 (273)
432 PRK06512 thiamine-phosphate py 30.2 3.8E+02 0.0081 26.8 9.6 66 47-116 118-191 (221)
433 PRK10307 putative glycosyl tra 30.1 6.8E+02 0.015 26.4 13.0 104 18-133 260-372 (412)
434 TIGR01859 fruc_bis_ald_ fructo 30.1 1.7E+02 0.0037 30.4 7.3 69 47-117 152-230 (282)
435 COG1091 RfbD dTDP-4-dehydrorha 30.0 1.1E+02 0.0024 32.1 5.8 57 19-79 2-65 (281)
436 TIGR03572 WbuZ glycosyl amidat 30.0 2.5E+02 0.0054 27.7 8.3 69 47-117 29-103 (232)
437 cd01542 PBP1_TreR_like Ligand- 29.9 2.3E+02 0.005 27.3 8.0 63 28-96 16-86 (259)
438 smart00717 SANT SANT SWI3, AD 29.7 1.8E+02 0.0039 20.3 5.5 43 307-354 2-45 (49)
439 PRK14723 flhF flagellar biosyn 29.6 3.2E+02 0.0069 32.7 10.1 103 18-121 216-335 (767)
440 TIGR00959 ffh signal recogniti 29.6 4.2E+02 0.0091 29.4 10.6 54 17-72 128-191 (428)
441 cd06295 PBP1_CelR Ligand bindi 29.6 2.8E+02 0.0061 27.1 8.6 62 29-96 28-95 (275)
442 cd01575 PBP1_GntR Ligand-bindi 29.6 2.4E+02 0.0051 27.2 8.0 62 29-96 17-86 (268)
443 PLN02823 spermine synthase 29.6 1.3E+02 0.0028 32.2 6.4 54 18-74 128-187 (336)
444 PRK06806 fructose-bisphosphate 29.6 3.5E+02 0.0075 28.2 9.5 69 46-116 151-229 (281)
445 TIGR01182 eda Entner-Doudoroff 29.5 5.7E+02 0.012 25.4 10.7 79 44-126 13-95 (204)
446 TIGR01163 rpe ribulose-phospha 29.5 3.4E+02 0.0073 25.9 9.0 93 20-116 83-192 (210)
447 cd06354 PBP1_BmpA_PnrA_like Pe 29.5 1.7E+02 0.0036 29.1 7.0 64 30-96 21-89 (265)
448 COG0118 HisH Glutamine amidotr 29.3 90 0.0019 31.2 4.8 37 17-53 1-37 (204)
449 PRK09526 lacI lac repressor; R 29.2 2.1E+02 0.0045 29.2 7.9 64 28-95 80-151 (342)
450 PRK10446 ribosomal protein S6 29.1 1E+02 0.0022 31.8 5.5 52 19-72 2-66 (300)
451 cd03791 GT1_Glycogen_synthase_ 29.1 4.9E+02 0.011 28.1 11.1 106 18-133 326-441 (476)
452 PRK06552 keto-hydroxyglutarate 29.0 3.4E+02 0.0074 27.0 9.0 90 35-127 8-104 (213)
453 PF01081 Aldolase: KDPG and KH 29.0 1.1E+02 0.0024 30.2 5.4 56 69-126 37-95 (196)
454 cd03822 GT1_ecORF704_like This 28.9 4.4E+02 0.0095 26.2 10.0 75 50-133 258-333 (366)
455 cd06348 PBP1_ABC_ligand_bindin 28.9 3.3E+02 0.0071 27.9 9.3 55 28-87 152-213 (344)
456 PRK12826 3-ketoacyl-(acyl-carr 28.8 2.1E+02 0.0045 27.5 7.4 34 15-48 4-37 (251)
457 cd01147 HemV-2 Metal binding p 28.6 1.3E+02 0.0027 29.7 5.9 10 62-71 73-82 (262)
458 PRK05031 tRNA (uracil-5-)-meth 28.5 4.8E+02 0.01 27.9 10.6 75 18-96 229-320 (362)
459 COG1737 RpiR Transcriptional r 28.4 2.9E+02 0.0064 28.4 8.7 81 20-102 135-218 (281)
460 cd06323 PBP1_ribose_binding Pe 28.4 2.4E+02 0.0053 27.2 7.8 62 31-97 19-89 (268)
461 PRK13397 3-deoxy-7-phosphohept 28.3 5.2E+02 0.011 26.7 10.3 88 32-121 113-224 (250)
462 cd00381 IMPDH IMPDH: The catal 28.3 1.8E+02 0.004 30.7 7.3 62 52-116 97-162 (325)
463 PRK01185 ppnK inorganic polyph 28.3 3.8E+02 0.0081 27.8 9.4 94 19-135 2-106 (271)
464 cd08170 GlyDH Glycerol dehydro 28.2 2.4E+02 0.0052 29.8 8.3 71 18-94 23-107 (351)
465 PRK12727 flagellar biosynthesi 28.2 3.8E+02 0.0082 30.9 10.0 54 18-72 381-437 (559)
466 PLN02617 imidazole glycerol ph 28.2 4.1E+02 0.009 30.4 10.5 66 64-129 453-530 (538)
467 TIGR01306 GMP_reduct_2 guanosi 28.2 1.3E+02 0.0028 32.1 6.1 54 64-117 109-165 (321)
468 TIGR03499 FlhF flagellar biosy 28.2 1.4E+02 0.0031 30.8 6.3 53 18-71 225-280 (282)
469 PRK11579 putative oxidoreducta 28.2 5.1E+02 0.011 27.1 10.7 102 16-130 3-110 (346)
470 cd06285 PBP1_LacI_like_7 Ligan 28.1 2.5E+02 0.0055 27.3 7.9 62 29-96 17-86 (265)
471 PRK09186 flagellin modificatio 28.0 3E+02 0.0065 26.7 8.5 34 15-48 2-35 (256)
472 cd06309 PBP1_YtfQ_like Peripla 28.0 1.8E+02 0.0039 28.5 6.9 64 29-96 17-88 (273)
473 cd06345 PBP1_ABC_ligand_bindin 28.0 4.9E+02 0.011 26.7 10.4 74 19-97 146-234 (344)
474 cd01574 PBP1_LacI Ligand-bindi 28.0 2.7E+02 0.006 26.8 8.1 64 28-96 16-87 (264)
475 cd08194 Fe-ADH6 Iron-containin 27.9 3.4E+02 0.0074 29.0 9.4 63 18-86 24-99 (375)
476 cd08556 GDPD Glycerophosphodie 27.9 3.6E+02 0.0078 24.9 8.6 35 81-116 151-187 (189)
477 PRK13608 diacylglycerol glucos 27.9 6.8E+02 0.015 26.6 11.8 61 64-133 274-337 (391)
478 PLN02605 monogalactosyldiacylg 27.9 5E+02 0.011 27.4 10.7 61 64-133 283-346 (382)
479 COG0626 MetC Cystathionine bet 27.9 4.3E+02 0.0093 29.1 10.2 96 17-115 102-205 (396)
480 cd03788 GT1_TPS Trehalose-6-Ph 27.7 2.5E+02 0.0054 31.0 8.6 73 49-133 350-426 (460)
481 cd01537 PBP1_Repressors_Sugar_ 27.7 3.5E+02 0.0076 25.6 8.7 66 28-98 16-89 (264)
482 PRK13585 1-(5-phosphoribosyl)- 27.7 4.5E+02 0.0099 25.9 9.7 66 49-116 150-221 (241)
483 cd00167 SANT 'SWI3, ADA2, N-Co 27.6 1.9E+02 0.0042 19.8 5.2 44 308-355 1-44 (45)
484 cd06289 PBP1_MalI_like Ligand- 27.6 3E+02 0.0065 26.5 8.3 63 29-96 17-87 (268)
485 cd04724 Tryptophan_synthase_al 27.5 4.3E+02 0.0093 26.6 9.6 95 20-117 108-215 (242)
486 TIGR02130 dapB_plant dihydrodi 27.5 3.9E+02 0.0085 27.9 9.4 59 62-122 67-128 (275)
487 PLN00142 sucrose synthase 27.4 1E+03 0.023 28.7 13.9 74 51-133 657-731 (815)
488 TIGR02470 sucr_synth sucrose s 27.4 7.2E+02 0.016 29.9 12.5 64 64-133 644-708 (784)
489 PRK10867 signal recognition pa 27.3 5.9E+02 0.013 28.3 11.2 54 17-72 129-192 (433)
490 PRK07024 short chain dehydroge 27.3 2.4E+02 0.0052 27.7 7.6 33 17-49 2-34 (257)
491 TIGR02085 meth_trns_rumB 23S r 27.2 4.4E+02 0.0094 28.4 10.1 85 18-109 256-346 (374)
492 PRK00748 1-(5-phosphoribosyl)- 27.1 2.9E+02 0.0063 27.0 8.2 70 47-118 29-104 (233)
493 cd06283 PBP1_RegR_EndR_KdgR_li 27.1 3.4E+02 0.0074 26.1 8.6 62 29-96 17-86 (267)
494 cd06305 PBP1_methylthioribose_ 27.0 2.3E+02 0.0049 27.6 7.4 65 29-97 17-89 (273)
495 cd06301 PBP1_rhizopine_binding 27.0 3.1E+02 0.0067 26.7 8.3 63 31-97 19-90 (272)
496 cd06313 PBP1_ABC_sugar_binding 27.0 2.5E+02 0.0054 27.8 7.8 65 29-97 17-89 (272)
497 PRK10416 signal recognition pa 26.8 4.3E+02 0.0094 27.9 9.8 54 17-72 142-205 (318)
498 cd06293 PBP1_LacI_like_11 Liga 26.8 3.1E+02 0.0066 26.7 8.3 64 28-96 16-86 (269)
499 cd08185 Fe-ADH1 Iron-containin 26.7 1.9E+02 0.0042 30.9 7.3 50 18-69 26-89 (380)
500 COG1411 Uncharacterized protei 26.7 2.2E+02 0.0048 28.7 6.9 70 47-117 136-210 (229)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=100.00 E-value=5.5e-71 Score=558.59 Aligned_cols=238 Identities=39% Similarity=0.640 Sum_probs=184.6
Q ss_pred ccCCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhhcccCCccc-CCCCccccccc
Q 009017 300 SKASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQM 378 (546)
Q Consensus 300 ~~~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~~~~~~~~-~~~~~~~~~~~ 378 (546)
.-.|+.|++||+|||+|||+||++||.||||||+||++|||+||||+||||||||||+++|+.+.++. .++|+++|+..
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~~ 310 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYT 310 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhhc
Confidence 34567889999999999999999999999999999999999999999999999999999999999998 79999999865
Q ss_pred cc-----CCCCCCCc---ccCCCC-------------CCCCCCCCCCCCcccCCCCCCCCccccCCCCC---CCCCCCCC
Q 009017 379 LR-----NYYPHKPI---MAFPPY-------------HSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQQAE 434 (546)
Q Consensus 379 ~~-----~~~~~~~~---~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~ 434 (546)
.. +.....|+ ++|||. .++||.|-..++||||||+++++.|||||++. .++|++.+
T Consensus 311 ~~P~~rs~~~~g~p~~~pigfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~~D 390 (526)
T PLN03162 311 QAPWPRSSRRDGLPYLVPIHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQAAD 390 (526)
T ss_pred cCCcccCCCCCCCccccccCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCCCCC
Confidence 42 11111111 455542 22233233346799999999999999999844 46799975
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC---CCCC--------------------CCCCC
Q 009017 435 --SWNWKPYPGMPADAWGCPVMPLPNGPYSSF------PQGASGYHNS---GVDD--------------------NSYAM 483 (546)
Q Consensus 435 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~--------------------~~~~~ 483 (546)
||| +||.+..|. -|+||||.|...+... |+-.|+|..+ |+.| .+...
T Consensus 391 p~fW~-h~~~~~~a~-~gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~~~ 468 (526)
T PLN03162 391 GSYWQ-HPATGYDAF-SARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGVAA 468 (526)
T ss_pred cchhh-cccccCccc-cCCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccchhh
Confidence 886 478876543 3999999776321111 2212233221 1222 11222
Q ss_pred CCCcccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 009017 484 PQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 539 (546)
Q Consensus 484 ~~~~~~~~~~~e~~d~~~~~~~~~p~~p~p~glk~p~~~~v~~el~~~g~~~~p~~ 539 (546)
.++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus 469 ~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~ 524 (526)
T PLN03162 469 CSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS 524 (526)
T ss_pred cccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence 45899999999999999999999999999999999999999999999999999996
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1.9e-20 Score=186.47 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=133.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPII 92 (546)
++|||||||+.++..|...|+..||.|..+.++++|++.+.. . ||+||+|+.||+ ++|+++|++|| .+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~-~dG~~~~~~iR~~~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPD-LDGLELCRRLRAKKGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCC-CCHHHHHHHHHhhcCCCCcEE
Confidence 489999999999999999999999999999999999999999 7 999999999999 99999999998 47899
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh--c--CCCc-------------------ccCCchh
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN--A--GGSA-------------------LSDSLKP 149 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~--~--~~~~-------------------~~~~Lt~ 149 (546)
|+|+.++.+....++++||||||.|||++.||+++|+.++++... . .... ....|+.
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g~l~id~~~~~v~~~~~~i~Lt~ 156 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTRTVTLNGRELTLTP 156 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcCcccccccceeEECCEEEEcCcCEEEECCEEecCCh
Confidence 999999999999999999999999999999999999999988642 0 0000 0244779
Q ss_pred hHHHHHHHHhhhhccchhhhhhhcccc
Q 009017 150 VKESVVSMLHLKLENGESKNEKSENTE 176 (546)
Q Consensus 150 re~evl~ll~l~~~l~~~e~ev~~dl~ 176 (546)
+|.+++.++...........++...++
T Consensus 157 ~Ef~lL~~L~~~~g~v~sR~~L~~~vw 183 (229)
T COG0745 157 KEFELLELLARHPGRVLSREQLLEAVW 183 (229)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHhc
Confidence 999999988776665555555555444
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.84 E-value=2.7e-20 Score=177.62 Aligned_cols=149 Identities=23% Similarity=0.343 Sum_probs=130.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+...-|.|||||..+++.+..+|+..||.|.++.++++.|..... ..+.++|+|+.||+ ++|+++..+|. .+|
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg-~sGlelq~~L~~~~~~~P 78 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPG-MSGLELQDRLAERGIRLP 78 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCC-CchHHHHHHHHhcCCCCC
Confidence 345679999999999999999999999999999999999999766 68999999999999 99999999986 799
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC--------cccCCchhhHHHHHHHHhhhh
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS--------ALSDSLKPVKESVVSMLHLKL 162 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~--------~~~~~Lt~re~evl~ll~l~~ 162 (546)
|||+|++.|.....+|++.||.|||.||++.+.|+.+|++++++....... ..+..||+||++++..+-...
T Consensus 79 VIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~~~~~l~tLT~RERqVl~~vV~G~ 158 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAAIRARLATLTPRERQVLDLVVRGL 158 (202)
T ss_pred EEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999998764332221 236789999999998877555
Q ss_pred ccch
Q 009017 163 ENGE 166 (546)
Q Consensus 163 ~l~~ 166 (546)
.+.+
T Consensus 159 ~NKq 162 (202)
T COG4566 159 MNKQ 162 (202)
T ss_pred ccHH
Confidence 4443
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.76 E-value=8.6e-18 Score=181.25 Aligned_cols=119 Identities=27% Similarity=0.423 Sum_probs=112.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+++.+|||||||..++..+...|+..||.|.++.++.+|++.+.. ..+|+||+|+.||+ ++|+++++.++ ++|
T Consensus 2 ~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~-~~Gl~ll~~i~~~~~~~p 78 (464)
T COG2204 2 MMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPG-MDGLELLKEIKSRDPDLP 78 (464)
T ss_pred CCcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCC
Confidence 345679999999999999999999999999999999999999999 67999999999999 99999999997 699
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
||++|++.+.+.+.+|++.||.|||.|||+.+.|...|++++....
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998654
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.75 E-value=6.7e-18 Score=181.94 Aligned_cols=118 Identities=22% Similarity=0.329 Sum_probs=110.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHh--hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLE--AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le--~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
|.+||||||++.+|+.|+.++. ..||+|+ +|.||.+|++.+.+ ..|||||+|+.||+ |+|+++++.++ ++
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~-mdGLdLI~~ike~~p~~ 77 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPG-MDGLDLIKAIKEQSPDT 77 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCc
Confidence 4799999999999999999986 4599976 99999999999999 89999999999999 99999999997 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~ 137 (546)
.+||+|++++.+.+.+|++.|+.|||+||++.++|..++.++..+...
T Consensus 78 ~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 78 EFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred eEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998876543
No 6
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.75 E-value=1.8e-18 Score=136.43 Aligned_cols=54 Identities=50% Similarity=0.714 Sum_probs=51.5
Q ss_pred CcCccchhhhhhHHHHHHHhc-CCCCChHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 009017 305 LQNSCGNKANRKKMKAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 358 (546)
Q Consensus 305 ~~~~~~~~lh~~f~~av~~lg-~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~ 358 (546)
+|++||+|+|++|++||++|| .+.||||.|+++|++.+||+.+|+|||||||+.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 599999999999999999999999999999975
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.72 E-value=1.1e-16 Score=137.84 Aligned_cols=107 Identities=23% Similarity=0.406 Sum_probs=102.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvL 94 (546)
||||||++..+..++..|+..|| .|..+.++.++++.+.. ..||+||+|+.+++ .+|+++++.|+ .+++|++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecc-ccccccccccccccccccEEEe
Confidence 79999999999999999999999 89999999999999998 78999999999999 99999999997 6999999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
|...+.....+++++|+++||.||++.++|.++|+
T Consensus 78 t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 78 TDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 99999999999999999999999999999999874
No 8
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.72 E-value=5.8e-17 Score=159.36 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=128.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G-y~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
++|+||||++.++..|+.+|+..+ ++|+ .+.+++++++.+.. ..||+||+|+.||+ ++|+++++.|+ +++|
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~-~~G~e~~~~l~~~~p~~~v 77 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPG-MDGLEALKQLRARGPDIKV 77 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCC-CChHHHHHHHHHHCCCCcE
Confidence 479999999999999999998764 8866 88889999999888 78999999999999 99999999997 6899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH----------hcC-----CCccc-CCchhhHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF----------NAG-----GSALS-DSLKPVKESVV 155 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~----------~~~-----~~~~~-~~Lt~re~evl 155 (546)
|++|.+.+...+.+++++||++|+.|..+.++|..+|+.+..+.. ... ..... ..||+||.+|+
T Consensus 78 vvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL 157 (211)
T COG2197 78 VVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVL 157 (211)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999998874320 000 00111 36999999999
Q ss_pred HHHhhhhccchhhhhhhc
Q 009017 156 SMLHLKLENGESKNEKSE 173 (546)
Q Consensus 156 ~ll~l~~~l~~~e~ev~~ 173 (546)
+++.....+.+.-.+...
T Consensus 158 ~lla~G~snkeIA~~L~i 175 (211)
T COG2197 158 RLLAEGLSNKEIAEELNL 175 (211)
T ss_pred HHHHCCCCHHHHHHHHCC
Confidence 999887776665555433
No 9
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=1e-16 Score=155.88 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=108.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
++|||||||+.+++.-+.+++.. ||.++ ++.+.++|...+.. ..|||||+|+.||+ .+|++|+..++ .+-|
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd-~~Gi~lL~~ir~~~~~~DV 77 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPD-GNGIELLPELRSQHYPVDV 77 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCC-CccHHHHHHHHhcCCCCCE
Confidence 47999999999999999999986 89966 99999999999998 78999999999999 99999999998 5889
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~ 137 (546)
|++|+-.|.+.+.+|++.||.|||.|||..+.|.+++.+..+++..
T Consensus 78 I~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 78 IVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred EEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888776543
No 10
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=5.5e-15 Score=142.11 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=127.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pvi~l 78 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAIPVIVL 78 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 589999999999999999999999999999999999998877 67999999999999 99999999987 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-c--------------------ccCCchhhHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-A--------------------LSDSLKPVKES 153 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~-~--------------------~~~~Lt~re~e 153 (546)
|+..+.+....++++||++||.||++.++|..+++.++++....... . ....|+.+|.+
T Consensus 79 t~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Lt~~E~~ 158 (225)
T PRK10529 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFR 158 (225)
T ss_pred ECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccCCCcceeECCEEEEcccCEEEECCEEEECCHHHHH
Confidence 99999999999999999999999999999999999888764321110 0 02347788888
Q ss_pred HHHHHhhhhccchhhhhhhccc
Q 009017 154 VVSMLHLKLENGESKNEKSENT 175 (546)
Q Consensus 154 vl~ll~l~~~l~~~e~ev~~dl 175 (546)
++.++...........++...+
T Consensus 159 ll~~L~~~~~~~~s~~~l~~~v 180 (225)
T PRK10529 159 LLAVLLNNAGKVLTQRQLLNQV 180 (225)
T ss_pred HHHHHHhCCCeeEcHHHHHHHh
Confidence 8887765544443444443333
No 11
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.65 E-value=6e-15 Score=141.88 Aligned_cols=153 Identities=15% Similarity=0.227 Sum_probs=127.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
|+||||||+...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|||+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~l~~~lr~~~~~~pii~ 77 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 379999999999999999999999999999999999999987 78999999999999 99999999886 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc-------------------ccCCchhhHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKESV 154 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~-------------------~~~~Lt~re~ev 154 (546)
+|+..+.+....+++.||+|||.||++..+|..+++.++++........ ....||.+|.++
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lt~~E~~l 157 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTI 157 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhccccCCCCeEEECCEEEEcccCEEEECCEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999998887642111100 023478899999
Q ss_pred HHHHhhhhccchhhhhhhc
Q 009017 155 VSMLHLKLENGESKNEKSE 173 (546)
Q Consensus 155 l~ll~l~~~l~~~e~ev~~ 173 (546)
+.++...........++..
T Consensus 158 l~~L~~~~~~vvs~~~l~~ 176 (223)
T PRK10816 158 METLIRNNGKVVSKDSLML 176 (223)
T ss_pred HHHHHhCCCeeEcHHHHHH
Confidence 9888655444333444443
No 12
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-15 Score=158.32 Aligned_cols=118 Identities=22% Similarity=0.313 Sum_probs=110.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-------
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------- 87 (546)
..+++||+|||++..+..++..|+..||+|..|.++++++++... ..+|+||+|+.||+ |+|+++|++|+
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~-mdg~ev~~~lk~~~p~t~ 88 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPE-MDGAEVLNKLKAMSPSTR 88 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCC-ccHHHHHHHHHhcCCccc
Confidence 346899999999999999999999999999999999999999998 67999999999999 99999999986
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.+|||++|+..|.+...+|+.+||+|||.||+++.+|..++...++.+
T Consensus 89 ~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 89 RIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999997666443
No 13
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.64 E-value=7.7e-15 Score=140.26 Aligned_cols=143 Identities=16% Similarity=0.240 Sum_probs=121.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+++||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~ii 79 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPD-ISGFELCRQLLAFHPALPVI 79 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4689999999999999999999999999999999999998887 67999999999999 99999999886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC--C-------------------cccCCchhhH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--S-------------------ALSDSLKPVK 151 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~--~-------------------~~~~~Lt~re 151 (546)
++|+..+......++++||++||.||++.++|..+++.++++...... . .....||++|
T Consensus 80 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E 159 (228)
T PRK11083 80 FLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARISYFGTPLTLTRYE 159 (228)
T ss_pred EEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccCCCceeEECCEEEecCccEEEECCEEeecCHHH
Confidence 999999888899999999999999999999999999988765322100 0 0012478899
Q ss_pred HHHHHHHhhhh
Q 009017 152 ESVVSMLHLKL 162 (546)
Q Consensus 152 ~evl~ll~l~~ 162 (546)
.+++.++....
T Consensus 160 ~~il~~l~~~~ 170 (228)
T PRK11083 160 FLLLKTLLLSP 170 (228)
T ss_pred HHHHHHHHhCC
Confidence 99988877643
No 14
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.64 E-value=4.9e-15 Score=143.83 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=124.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCC---CHHHHHHHhC----
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY-I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD---GSFKFLETAK---- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy-~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~---dGlellr~Lr---- 87 (546)
.++||||||++..+..++..|+..++ . +..+.++.++++.+.. ..||+||+|+.|++ . +|+++++.|+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~-~~~~~g~~~~~~l~~~~~ 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPG-DKYGDGITLIKYIKRHFP 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCC-CCCCCHHHHHHHHHHHCC
Confidence 47999999999999999999987654 4 5689999999999987 67999999999998 6 8999999986
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH----------h--cCCCcccCCchhhHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF----------N--AGGSALSDSLKPVKESVV 155 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~----------~--~~~~~~~~~Lt~re~evl 155 (546)
.++||++|...+......++++||++||.||.+.++|..+|+.+..... . .........||+||.+++
T Consensus 80 ~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl 159 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVL 159 (216)
T ss_pred CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHH
Confidence 5899999999999999999999999999999999999999987754211 0 001111346999999999
Q ss_pred HHHhhhhccchhhhhh
Q 009017 156 SMLHLKLENGESKNEK 171 (546)
Q Consensus 156 ~ll~l~~~l~~~e~ev 171 (546)
.++..+..+.+.-+++
T Consensus 160 ~~~~~G~s~~eIA~~l 175 (216)
T PRK10840 160 RLFAEGFLVTEIAKKL 175 (216)
T ss_pred HHHHCCCCHHHHHHHH
Confidence 9998776655544444
No 15
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.64 E-value=7.1e-15 Score=144.26 Aligned_cols=119 Identities=11% Similarity=0.175 Sum_probs=108.1
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
|+++++||||||++.++..+...|+.. ||. |..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~-~~gle~~~~l~~~~~ 77 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPD-GRGINLLHELVQAHY 77 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhcCC
Confidence 455689999999999999999999864 786 5699999999999988 78999999999999 99999999996
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
..+||++|+..+...+.+++++||++||.||++.++|..+|+++..+.
T Consensus 78 ~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 78 PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999998876654
No 16
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=1.4e-14 Score=138.93 Aligned_cols=116 Identities=12% Similarity=0.239 Sum_probs=108.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
.++||||||+...+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.|++ ++|+++++.++ .+|+|+
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~ii~ 78 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPG-EDGLMLTRELRSRSTVGIIL 78 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCCEEE
Confidence 3689999999999999999999999999999999999999987 67999999999999 99999999987 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+++..+......++++||+|||.||++..+|..++..++++.
T Consensus 79 l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999888764
No 17
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.63 E-value=1.3e-14 Score=138.12 Aligned_cols=139 Identities=17% Similarity=0.337 Sum_probs=119.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~pii~ 77 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPD-EDGLHLLRRWRQKKYTLPVLI 77 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 479999999999999999999999999999999999999887 67999999999999 99999999886 589999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc-------------------ccCCchhhHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKESV 154 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~-------------------~~~~Lt~re~ev 154 (546)
+|+..+......++++||++|+.||++.++|..+++.++++........ ....|+++|.++
T Consensus 78 ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~i 157 (222)
T PRK10643 78 LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQGQGENELQVGNLTLNLGRQQVWLDGQELILTPKEFAL 157 (222)
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhccccCCceEECCEEEEcCCCEEEECCEEEecCHHHHHH
Confidence 9999999999999999999999999999999999998887643221100 012477888888
Q ss_pred HHHHh
Q 009017 155 VSMLH 159 (546)
Q Consensus 155 l~ll~ 159 (546)
+.++.
T Consensus 158 l~~l~ 162 (222)
T PRK10643 158 LSRLM 162 (222)
T ss_pred HHHHH
Confidence 77664
No 18
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.63 E-value=1.1e-14 Score=138.73 Aligned_cols=141 Identities=15% Similarity=0.247 Sum_probs=120.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
..+||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCC
Confidence 3689999999999999999999899999999999999999987 67999999999999 99999999886 478
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc--------------------ccCCchhh
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA--------------------LSDSLKPV 150 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~--------------------~~~~Lt~r 150 (546)
||++|+..+......++++||++||.||++.++|..+++.++++........ ....||++
T Consensus 79 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 158 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPT 158 (226)
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccccccCceEECCEEEEcCccEEEECCEEEEcCHH
Confidence 9999999999999999999999999999999999999998887542111000 01248888
Q ss_pred HHHHHHHHhh
Q 009017 151 KESVVSMLHL 160 (546)
Q Consensus 151 e~evl~ll~l 160 (546)
|.+++.++..
T Consensus 159 E~~il~~l~~ 168 (226)
T TIGR02154 159 EFRLLHFFMT 168 (226)
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 19
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.63 E-value=1.3e-14 Score=139.84 Aligned_cols=153 Identities=11% Similarity=0.219 Sum_probs=125.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
|+||||||+...+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.+++ .+|+++++.++ .+|||+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~-~~g~~~~~~lr~~~~~~pii~ 77 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPD-VNGWDIVRMLRSANKGMPILL 77 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 379999999999999999999999999999999999998887 67999999999999 99999999886 589999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc-CCCc-------------------ccCCchhhHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-GGSA-------------------LSDSLKPVKES 153 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~-~~~~-------------------~~~~Lt~re~e 153 (546)
+|+..+.+....++++||++||.||++.++|..+++.++++.... .... ....||.+|.+
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lt~~E~~ 157 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFT 157 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcccccCCCCcEEEcCEEEEcccCEEEECCEEEecCHHHHH
Confidence 999999999999999999999999999999999999888753211 0100 01237788888
Q ss_pred HHHHHhhhhccchhhhhhhc
Q 009017 154 VVSMLHLKLENGESKNEKSE 173 (546)
Q Consensus 154 vl~ll~l~~~l~~~e~ev~~ 173 (546)
++.++...........++..
T Consensus 158 ll~~l~~~~g~~~sr~~l~~ 177 (227)
T PRK09836 158 LLEFFLRHQGEVLPRSLIAS 177 (227)
T ss_pred HHHHHHhCCCeeEcHHHHHH
Confidence 88887654443333333333
No 20
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1.4e-14 Score=137.92 Aligned_cols=141 Identities=18% Similarity=0.303 Sum_probs=120.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~ 77 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPG-MDGRDILREWREKGQREPVLI 77 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 479999999999999999999999999999999999998887 67999999999999 99999999886 589999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC------C-------c------ccCCchhhHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG------S-------A------LSDSLKPVKESV 154 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~------~-------~------~~~~Lt~re~ev 154 (546)
+|+..+......++++||++|+.||++.++|..+++.++++...... . . ....||.+|.++
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~i 157 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFAL 157 (219)
T ss_pred EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEEEecCHHHHHH
Confidence 99999999999999999999999999999999999988765321100 0 0 012488899999
Q ss_pred HHHHhhh
Q 009017 155 VSMLHLK 161 (546)
Q Consensus 155 l~ll~l~ 161 (546)
+.++...
T Consensus 158 l~~l~~~ 164 (219)
T PRK10336 158 LELLMRN 164 (219)
T ss_pred HHHHHhC
Confidence 8877654
No 21
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.62 E-value=1.7e-14 Score=139.35 Aligned_cols=141 Identities=13% Similarity=0.235 Sum_probs=120.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPI 91 (546)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 689999999999999999999999999999999999999887 68999999999999 99999999886 4789
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC-C-------------------cccCCchhhH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-S-------------------ALSDSLKPVK 151 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~-~-------------------~~~~~Lt~re 151 (546)
|++|+..+.....+++++||++||.||++.++|..+|+.++++...... . .....|+++|
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E 159 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTE 159 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcccccCcCceeEECCEEEEcCcCEEEECCEEEEcCHHH
Confidence 9999999999999999999999999999999999999988876321100 0 0012478889
Q ss_pred HHHHHHHhhh
Q 009017 152 ESVVSMLHLK 161 (546)
Q Consensus 152 ~evl~ll~l~ 161 (546)
.+++.++...
T Consensus 160 ~~ll~~l~~~ 169 (229)
T PRK10161 160 FKLLHFFMTH 169 (229)
T ss_pred HHHHHHHHhC
Confidence 8888887653
No 22
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.62 E-value=1.8e-14 Score=137.77 Aligned_cols=153 Identities=13% Similarity=0.247 Sum_probs=126.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
|+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|||++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPG-MDGWQILQTLRTAKQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 379999999999999999999999999999999999999887 68999999999999 99999999886 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------ccCCchhhHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------LSDSLKPVKESVVS 156 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~------------------~~~~Lt~re~evl~ 156 (546)
++..+.+...+++++||++||.||++.++|..+++.++++........ ....||.+|.+++.
T Consensus 78 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~ 157 (223)
T PRK11517 78 TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLW 157 (223)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCcCCeEEECCEEEEcCCCEEEECCEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999998876532111100 01248899999998
Q ss_pred HHhhhhccchhhhhhhc
Q 009017 157 MLHLKLENGESKNEKSE 173 (546)
Q Consensus 157 ll~l~~~l~~~e~ev~~ 173 (546)
++...........++..
T Consensus 158 ~l~~~~g~~~s~~~i~~ 174 (223)
T PRK11517 158 LLASRAGEIIPRTVIAS 174 (223)
T ss_pred HHHhCCCccCCHHHHHH
Confidence 88765444333334433
No 23
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.61 E-value=7.8e-15 Score=157.39 Aligned_cols=118 Identities=17% Similarity=0.331 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
...+||||||+...+..++.+|...||+|..+.++.+|+..+.+ ..||+||+|+.||+ +||+++++++| .+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~-~dg~el~~~lr~~~~t~~i 207 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPD-MDGLELCTRLRQLERTRDI 207 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCc-cCHHHHHHHHhcccccccc
Confidence 45799999999999999999999999999999999999999999 78999999999999 99999999987 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|||++++.++.....+|++.|++|||.||+...+|..++++.+++..
T Consensus 208 pii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 208 PIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred cEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998887654
No 24
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-14 Score=125.84 Aligned_cols=114 Identities=22% Similarity=0.369 Sum_probs=101.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH-HHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN-EALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~-eALe~L~~~~~-~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
...+||||||++..+..+...|...|+.|..+.++. +|++.+.. . .||+||+|+.||+ ++|+++++.++ .+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~-~~G~~~~~~l~~~~~~~ 80 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPG-MDGIELLRRLRARGPNI 80 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCC
Confidence 457999999999999999999999999999999995 99999998 6 4999999999999 99999999997 47
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK-LRNLWQHVV 132 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~ee-L~~~I~~vl 132 (546)
|+|++|+..+......+++.|+++|+.||+...+ |..++...+
T Consensus 81 pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 81 PVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 8899999988877788899999999999977666 666666444
No 25
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=3.3e-14 Score=136.82 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=105.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. .||+||+|+.|++ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPK-KNGIDTLKELRQTHQTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCC-CcHHHHHHHHHhcCCCcEEEE
Confidence 589999999999999999999999999999999999998754 5999999999999 99999999987 4899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|+..+......+++.||++||.||++.++|..+++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 99999888999999999999999999999999999888754
No 26
>PRK11173 two-component response regulator; Provisional
Probab=99.60 E-value=2.1e-14 Score=140.08 Aligned_cols=116 Identities=13% Similarity=0.256 Sum_probs=108.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
..+||||||+...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|+
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999999999999988 68999999999999 99999999997 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+|+..+......+++.||++||.||++..+|..++++++++.
T Consensus 80 lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999988999999999999999999999999998887653
No 27
>PRK09483 response regulator; Provisional
Probab=99.60 E-value=2.7e-14 Score=136.31 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=122.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
|++||||||++..+..+...|+.. |+.++ .+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .++
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ 77 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPG-IGGLEATRKILRYTPDVK 77 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCCe
Confidence 468999999999999999999874 88876 79999999999988 78999999999999 99999999886 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh-------------c--CCCcccCCchhhHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN-------------A--GGSALSDSLKPVKESVV 155 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~-------------~--~~~~~~~~Lt~re~evl 155 (546)
||++|...+......++..|+++|+.||++.++|..+++.++++... . ........|++||.+++
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl 157 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIM 157 (217)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999887653110 0 01111356999999999
Q ss_pred HHHhhhhccc
Q 009017 156 SMLHLKLENG 165 (546)
Q Consensus 156 ~ll~l~~~l~ 165 (546)
.++.......
T Consensus 158 ~~~~~G~~~~ 167 (217)
T PRK09483 158 LMITKGQKVN 167 (217)
T ss_pred HHHHCCCCHH
Confidence 8876554433
No 28
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.59 E-value=5.3e-14 Score=132.16 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=120.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
|++||||||++..+..+...|+.. ++. +..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+|||+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~ 77 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPD-ISGLELLSQLPKGMATIM 77 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHccCCCEEE
Confidence 368999999999999999999854 676 4589999999999987 67999999999999 99999999998 789999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh-------cCCCcccCCchhhHHHHHHHHhhhhc
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN-------AGGSALSDSLKPVKESVVSMLHLKLE 163 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~-------~~~~~~~~~Lt~re~evl~ll~l~~~ 163 (546)
++...+.+....+++.||++|+.||++.++|..+|+.++++... .........|+++|.+++.++.....
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~g~~ 154 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMA 154 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHhccccCCCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999987753110 00011134688999999988775543
No 29
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.59 E-value=5.7e-14 Score=136.75 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=126.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||+...+..+...|+..||.+..+.++.++++.+.. ..||+||+|+.+++ ++|+++++.++ .+|||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPG-EDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999987 78999999999999 99999999986 58999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc-------CCCcc-------------------cCC
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-------GGSAL-------------------SDS 146 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~-------~~~~~-------------------~~~ 146 (546)
++++..+......++++||++||.||++.++|..+++.++++.... ..... ...
T Consensus 82 ~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 161 (239)
T PRK09468 82 MLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQAPELPGAPSQEEEVIAFGKFKLNLGTRELFRGDEPMP 161 (239)
T ss_pred EEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccccccccccccCCCceEEECcEEEEcCcCEEEECCEEee
Confidence 9999999999999999999999999999999999999888753210 00000 123
Q ss_pred chhhHHHHHHHHhhhhccchhhhhh
Q 009017 147 LKPVKESVVSMLHLKLENGESKNEK 171 (546)
Q Consensus 147 Lt~re~evl~ll~l~~~l~~~e~ev 171 (546)
||.+|.+++.++...........++
T Consensus 162 Lt~~E~~lL~~L~~~~~~~~sr~~l 186 (239)
T PRK09468 162 LTTGEFAVLKALVSHPREPLSRDKL 186 (239)
T ss_pred cCHHHHHHHHHHHhCCCccCcHHHH
Confidence 7888888888776554443333333
No 30
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=1.1e-13 Score=133.16 Aligned_cols=115 Identities=21% Similarity=0.353 Sum_probs=105.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC----CCcEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLPTII 93 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr----~iPIIv 93 (546)
+||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++. .+|+++++.++ .+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999999999999999999999888 679999999999861 27999999886 589999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+|+..+......++++||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 31
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.58 E-value=5.3e-14 Score=132.98 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=120.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
|+||||||++..+..+...|+..||.+. .+.++.++++.+.. ..||+||+|+.+++ .+|+++++.++ ..++|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 77 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIII 77 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 4799999999999999999998899987 79999999999988 68999999999999 99999999886 57899
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh----------c--CCCcccCCchhhHHHHHHHHhh
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A--GGSALSDSLKPVKESVVSMLHL 160 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~----------~--~~~~~~~~Lt~re~evl~ll~l 160 (546)
++++..+......++..||++||.||++.++|..+++.++++... . ........|+.+|.+++.++..
T Consensus 78 ~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~ 157 (204)
T PRK09958 78 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILD 157 (204)
T ss_pred EEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999987653110 0 0111234588999998888775
Q ss_pred hh
Q 009017 161 KL 162 (546)
Q Consensus 161 ~~ 162 (546)
..
T Consensus 158 g~ 159 (204)
T PRK09958 158 GK 159 (204)
T ss_pred CC
Confidence 54
No 32
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.57 E-value=9.6e-14 Score=134.26 Aligned_cols=116 Identities=22% Similarity=0.384 Sum_probs=107.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
+++||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+|+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPK-LDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEE
Confidence 4689999999999999999999999999999999999998887 67999999999999 99999999886 699999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+|+..+......++++||++||.||++.++|..+++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887664
No 33
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=7.5e-14 Score=132.52 Aligned_cols=151 Identities=16% Similarity=0.288 Sum_probs=125.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLS 95 (546)
||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+|||+++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPG-MDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHccCCCCcEEEEE
Confidence 6899999999999999999999999999999999999987 68999999999999 99999999886 58999999
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc-------------------ccCCchhhHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKESVVS 156 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~-------------------~~~~Lt~re~evl~ 156 (546)
+..+......++++||++|+.||++.++|..+++.++++........ ....|+.+|.+++.
T Consensus 78 ~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~ 157 (218)
T TIGR01387 78 ARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEIADLRMDSVRHRVSRGNIRITLTRKEFQLLW 157 (218)
T ss_pred cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCCCCeEEECCEEEEcccCEEEECCEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999998876543221110 01248899999998
Q ss_pred HHhhhhccchhhhhhhc
Q 009017 157 MLHLKLENGESKNEKSE 173 (546)
Q Consensus 157 ll~l~~~l~~~e~ev~~ 173 (546)
++...........++..
T Consensus 158 ~l~~~~~~~~sr~~i~~ 174 (218)
T TIGR01387 158 LLMRRTGEVLPRTVIAS 174 (218)
T ss_pred HHHhCCCeeEcHHHHHH
Confidence 88765443333334433
No 34
>PLN03029 type-a response regulator protein; Provisional
Probab=99.57 E-value=4.9e-14 Score=139.31 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=104.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCC------------------CCeeEEEEecCCCCCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKP------------------ENFHVAIVEVTTSNTDG 78 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~------------------~~pDLVIlDl~mp~~~d 78 (546)
+++||||||+...+..+..+|+..||.|.++.++.++++.+.... ..+|+||+|+.||+ ++
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~-~~ 86 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG-MT 86 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC-CC
Confidence 579999999999999999999999999999999999999886410 13679999999999 99
Q ss_pred HHHHHHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 79 SFKFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 79 Glellr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|+++++.|+ ++|||++|+..+.....+++++||++||.||++..+|...+.++++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 999999886 589999999999999999999999999999999999977776665543
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.57 E-value=5.9e-14 Score=136.94 Aligned_cols=115 Identities=10% Similarity=0.189 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ ..|+|++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~~~~~ir~~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPG-KDGMTICRDLRPKWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999987 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++..+......++++||+|||.||++..+|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99888888889999999999999999999999998877653
No 36
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.56 E-value=8.4e-14 Score=136.59 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=105.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.|++ ++|+++++.++ .+|+|++
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~l~~~i~~~~~~pii~l 78 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGR-EDGLEIVRSLATKSDVPIIII 78 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEEE
Confidence 489999999999999999999999999999999999999987 68999999999999 99999999987 6899999
Q ss_pred ecC-CChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 95 SNI-HCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 95 Ss~-~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|+. .+......++++||++||.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 79 SGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred ECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 985 46667789999999999999999999999998887653
No 37
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.56 E-value=2.6e-14 Score=132.40 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=103.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvL 94 (546)
..||||||..+...|...+++.||.|.++.+.+|++..++. ..|...++|+.|.+ .+|+++++.|+ +..||++
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~-gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGD-GSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecC-CCchHHHHHHHhcCCcceEEEE
Confidence 58999999999999999999999999999999999999999 78999999999999 99999999987 7999999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
|++.+.....+|++.||++||.||-+.+++..++.+
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 999999999999999999999999999999887553
No 38
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.53 E-value=4.7e-13 Score=127.33 Aligned_cols=143 Identities=16% Similarity=0.319 Sum_probs=120.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++|||+||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ ++|+|+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~ 77 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLL 77 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999998887 67999999999999 99999998886 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------ccCCchhhHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------LSDSLKPVKESVV 155 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~------------------~~~~Lt~re~evl 155 (546)
+++..+.....++++.||++|+.||++.++|..+++.++++........ ....||++|.+++
T Consensus 78 lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il 157 (221)
T PRK15479 78 LTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQEVQQLGELIFHDEGYFLLQGQPLALTPREQALL 157 (221)
T ss_pred EECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccCcCccEEECCEEEccCCeEEECCEEEecCHHHHHHH
Confidence 9999999999999999999999999999999999998877543211100 0124889999998
Q ss_pred HHHhhhhc
Q 009017 156 SMLHLKLE 163 (546)
Q Consensus 156 ~ll~l~~~ 163 (546)
.++.....
T Consensus 158 ~~l~~~~~ 165 (221)
T PRK15479 158 TVLMYRRT 165 (221)
T ss_pred HHHHhCCC
Confidence 87765433
No 39
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.53 E-value=2.6e-13 Score=134.24 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=102.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
|++||||||++.++..++.+|.. .++.++ .+.++.+++..+......||+||+|+.||+ ++|+++++.++ .++
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~-~~G~eli~~l~~~~~~~~ 79 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQ-ENGLDLLPVLHEAGCKSD 79 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCC-CCcHHHHHHHHhhCCCCC
Confidence 36899999999999999999986 477755 889999999988521146999999999999 99999999986 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
||++|+..+.....++++.||++||.||++.++|..+|..+..+
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876543
No 40
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.52 E-value=7.7e-13 Score=127.93 Aligned_cols=140 Identities=13% Similarity=0.213 Sum_probs=119.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||+...+..+...|...||.|..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+|+|++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~pii~l 87 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPG-TDGLTLCREIRRFSDIPIVMV 87 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999999999999999999999999987 67999999999999 99999999887 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC--------c-------------ccCCchhhHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS--------A-------------LSDSLKPVKES 153 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~--------~-------------~~~~Lt~re~e 153 (546)
++..+......++++||++|+.||++.++|..+|+.++++....... . ....||++|.+
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~ 167 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWRGKMLDLTPAEFR 167 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCCCccceEeCCEEEEcCceEEEECCEEeecCHHHHH
Confidence 99988888899999999999999999999999998887754321110 0 01247788888
Q ss_pred HHHHHhh
Q 009017 154 VVSMLHL 160 (546)
Q Consensus 154 vl~ll~l 160 (546)
++.++..
T Consensus 168 il~~l~~ 174 (240)
T PRK10710 168 LLKTLSH 174 (240)
T ss_pred HHHHHHh
Confidence 8887765
No 41
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.52 E-value=5.4e-13 Score=125.90 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=118.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
..+||||||++..+..+...|+.. ++.+. .+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .++
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~ 79 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPG-TDGFTFLKRIKQIQSTVK 79 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCc
Confidence 578999999999999999999876 68875 78899999999887 68999999999999 99999999886 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh----------cCC----CcccCCchhhHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------AGG----SALSDSLKPVKESVVS 156 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~----------~~~----~~~~~~Lt~re~evl~ 156 (546)
||++|+..+......+++.|+++|+.||++.++|..+|+.++.+... ... ......|+.+|.+++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~ 159 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILR 159 (210)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHH
Confidence 99999999988999999999999999999999999999877654210 000 0012347888888888
Q ss_pred HHhhhh
Q 009017 157 MLHLKL 162 (546)
Q Consensus 157 ll~l~~ 162 (546)
++....
T Consensus 160 ~l~~g~ 165 (210)
T PRK09935 160 YLVSGL 165 (210)
T ss_pred HHHcCC
Confidence 775443
No 42
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.47 E-value=6.4e-13 Score=156.00 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~-mdG~el~~~ir~~~~~~pI 876 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPN-MDGYRLTQRLRQLGLTLPV 876 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 35799999999999999999999999999999999999999988 78999999999999 99999999997 5899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+.+...+++++|+++||.||++.++|...|.++.++.
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988776544
No 43
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.46 E-value=1.4e-12 Score=121.06 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=107.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..+...|...||.+..+.++.+++..+.. ..+|+||+|+.+++ ++|+++++.++ .+|+|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~-~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPG-IDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999887 67999999999999 99999999886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+++...+......+++.|+.+|+.||++.++|..+++.++...
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988877653
No 44
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.46 E-value=3.4e-13 Score=155.58 Aligned_cols=115 Identities=18% Similarity=0.328 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iP 90 (546)
.+.+||||||+...+.....+|+..|.+++.+.++.||++.+... +.||+||+|++||. |||+++.++|| .+|
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~-~~y~~ifmD~qMP~-mDG~e~~~~irk~~~~~~p 742 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP-HSYDVIFMDLQMPE-MDGYEATREIRKKERWHLP 742 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC-CcccEEEEEcCCcc-cchHHHHHHHHHhhcCCCC
Confidence 468999999999999999999999999999999999999999932 68999999999999 99999999997 699
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
||++|+..+.....+|++.|.++||.||++.+.|...+++.+
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887665
No 45
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.46 E-value=7.1e-13 Score=153.60 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=107.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPG-MDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcccCCCCC
Confidence 5789999999999999999999999999999999999999988 78999999999999 99999999986 489
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+.+...+++++|+++||.||++.++|...|.+++.
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999998887654
No 46
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.45 E-value=1.5e-12 Score=141.35 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=108.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~-~dgl~~l~~ir~~~~~~pvI 79 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 58999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++|+..+.+....++++|+.+||.||++.++|...|.+++...
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 47
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-13 Score=137.84 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=101.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++|+|||||..+...|..+|++.|..+..|+...+|++.+.. ..|||||+|+.||+ ++|++|+++++ .++||+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~-~ngiefaeQvr~i~~~v~iif 77 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPY-MNGIEFAEQVRDIESAVPIIF 77 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCC-ccHHHHHHHHHHhhccCcEEE
Confidence 479999999999999999999999778899999999999999 88999999999999 99999999997 699999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
+|++.. ....++..-++|||.||++.+.|-.+|.+..++
T Consensus 78 Issh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 78 ISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred Eecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 999754 555667777899999999999999999888754
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.45 E-value=1.2e-12 Score=151.97 Aligned_cols=114 Identities=16% Similarity=0.240 Sum_probs=107.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--------C
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--------D 88 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--------~ 88 (546)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~-~~G~~~~~~ir~~~~~~~~~ 766 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPG-LDGLETTQLWRDDPNNLDPD 766 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhhcCCC
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999886 3
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|||++|+..+.....+++++|+++||.||++.++|..++.++++
T Consensus 767 ~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 767 CMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999887664
No 49
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.44 E-value=1.9e-12 Score=129.31 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=103.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------C
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~ 88 (546)
.++||||||++..+..+...|+.. ++.++ .+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~~~l~~i~~~~~~~~ 78 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPH-LDGIGVLEKLNEIELSAR 78 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhccccC
Confidence 478999999999999999999864 56655 79999999999988 78999999999999 99999999886 2
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.|||++|+..+......+++.|+++||.||++.++|..+|++++..
T Consensus 79 ~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 79 PRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999999999998877643
No 50
>PRK15115 response regulator GlrR; Provisional
Probab=99.44 E-value=1.7e-12 Score=139.88 Aligned_cols=116 Identities=21% Similarity=0.355 Sum_probs=108.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~-~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDE-MDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4789999999999999999999999999999999999999988 78999999999999 99999999886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++|+..+.....+++++||++||.||++.++|...|+.+++..
T Consensus 82 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 82 ILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887643
No 51
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.44 E-value=2.2e-12 Score=126.20 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=98.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPI 91 (546)
|++||||||++..+..+...|+..| +. +..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ..+|
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~-~~G~~~~~~l~~~~~~~i 77 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPR-ISGLELVGMLDPEHMPYI 77 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHhcccCCCEE
Confidence 3799999999999999999999877 44 3478999999999887 67999999999999 99999999987 2457
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|++|+.. +...++++.||.+||.||++.++|..++.++.+.
T Consensus 78 i~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 78 VFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 7888754 4678899999999999999999999998887653
No 52
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.44 E-value=5.3e-12 Score=117.69 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
+.++|||+||+...+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~ 78 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPG-MNGLDVIPQLHQRWPAM 78 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCC
Confidence 4579999999999999999999875 57754 78999999998887 67999999999999 99999998886 58
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh------------c--CCCcccCCchhhHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN------------A--GGSALSDSLKPVKESVV 155 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~------------~--~~~~~~~~Lt~re~evl 155 (546)
++|++++..+......++..|+++|+.||++..+|...++.++++... . ........|++++.+++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl 158 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQIL 158 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999876543110 0 00111234889999998
Q ss_pred HHHhhhh
Q 009017 156 SMLHLKL 162 (546)
Q Consensus 156 ~ll~l~~ 162 (546)
.++....
T Consensus 159 ~l~~~g~ 165 (211)
T PRK15369 159 KLITEGY 165 (211)
T ss_pred HHHHCCC
Confidence 8875443
No 53
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.44 E-value=1.5e-12 Score=127.55 Aligned_cols=151 Identities=11% Similarity=0.047 Sum_probs=117.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CE-EEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHhC----C
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD--YI-VSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK----D 88 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G--y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~--mp~~~dGlellr~Lr----~ 88 (546)
+.||||||++.++..++.+|+..+ +. |..+.++.+++..+.. ..|||||+|+. ++. .+|+++++.|+ +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~-~~g~~~i~~i~~~~p~ 77 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHD-ASNSQRIKQIINQHPN 77 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCC-CChHHHHHHHHHHCCC
Confidence 369999999999999999998755 34 4489999999999887 67999999966 888 78999999986 5
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHHHHHhcCCCc--ccCCchhhHHHHHHHHhhhhccc
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVE-FLRKPLSEDKLRNLWQHVVHKAFNAGGSA--LSDSLKPVKESVVSMLHLKLENG 165 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdD-YL~KP~~~eeL~~~I~~vlrr~~~~~~~~--~~~~Lt~re~evl~ll~l~~~l~ 165 (546)
++||++|+..+..... ++..|+.. |+.|+.+.++|..+|+.+..+........ ....||+||.+++.++..+..+.
T Consensus 78 ~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~~~~~~~LT~RE~eVL~lla~G~snk 156 (207)
T PRK15411 78 TLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFLNLPTLSLSRTESSMLRMWMAGQGTI 156 (207)
T ss_pred CeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccccCCcccCCHHHHHHHHHHHcCCCHH
Confidence 8899999987766543 55556554 88999999999999998876543221111 11259999999999998777766
Q ss_pred hhhhhhh
Q 009017 166 ESKNEKS 172 (546)
Q Consensus 166 ~~e~ev~ 172 (546)
+.-.+..
T Consensus 157 eIA~~L~ 163 (207)
T PRK15411 157 QISDQMN 163 (207)
T ss_pred HHHHHcC
Confidence 5554443
No 54
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.43 E-value=5.1e-12 Score=119.26 Aligned_cols=145 Identities=13% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
...+|||||+++..+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ ..
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~~ 81 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSG 81 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 3478999999999999999999765 57654 78999999999987 67999999999999 99999999886 57
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH--------------hcC---CCcccCCchhhHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF--------------NAG---GSALSDSLKPVKE 152 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~--------------~~~---~~~~~~~Lt~re~ 152 (546)
++|+++...+......+++.|+++|+.||++.++|...++.++++.. ... .......|+++|.
T Consensus 82 ~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ 161 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRER 161 (216)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHH
Confidence 99999999899999999999999999999999999999988765310 000 0011234899999
Q ss_pred HHHHHHhhhhc
Q 009017 153 SVVSMLHLKLE 163 (546)
Q Consensus 153 evl~ll~l~~~ 163 (546)
+++.++.....
T Consensus 162 ~vl~~l~~g~~ 172 (216)
T PRK10651 162 DILKLIAQGLP 172 (216)
T ss_pred HHHHHHHcCCC
Confidence 99988765433
No 55
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.43 E-value=1.9e-12 Score=139.57 Aligned_cols=116 Identities=19% Similarity=0.314 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
....+||||||+...+..+...|+..||.|..+.++.+++..+.. ..+|+||+|+.|++ ++|+++++.++ .+|
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~-~~g~~ll~~i~~~~~~~p 78 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPE-MDGIKALKEMRSHETRTP 78 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 445689999999999999999999999999999999999999988 68999999999999 99999999886 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+.+....+++.|++|||.||++.++|...++.++.
T Consensus 79 vI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 79 VILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999998877654
No 56
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.43 E-value=1.2e-12 Score=128.77 Aligned_cols=139 Identities=11% Similarity=0.114 Sum_probs=109.8
Q ss_pred HHHHHHHHhh---CCCEEEEECCHHHHHHHhhcCCCCeeEEE---EecCCCCCCCHHHHHHHhC----CCcEEEEecCCC
Q 009017 30 AAELKFKLEA---MDYIVSTFYNENEALSAFSDKPENFHVAI---VEVTTSNTDGSFKFLETAK----DLPTIITSNIHC 99 (546)
Q Consensus 30 ~~~L~~~Le~---~Gy~V~~ass~~eALe~L~~~~~~pDLVI---lDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d 99 (546)
+..++.+|.. .||.|..+.+++++++.+.. ..||+|| +|+.||+ ++|++++++|+ .++||++|+..+
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~-~~Gl~~~~~l~~~~p~~~iIvlt~~~~ 79 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSER-REGLSCLTELAIKFPRMRRLVIADDDI 79 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCC-CCHHHHHHHHHHHCCCCCEEEEeCCCC
Confidence 5678888865 35666799999999999887 6799998 6888899 99999999996 689999999877
Q ss_pred hHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcC-------CCcccCCchhhHHHHHHHHhhhhccchhhhhh
Q 009017 100 LSTMMKCI-ALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG-------GSALSDSLKPVKESVVSMLHLKLENGESKNEK 171 (546)
Q Consensus 100 ~e~i~~Al-~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~-------~~~~~~~Lt~re~evl~ll~l~~~l~~~e~ev 171 (546)
......++ ++||++||.|+.+.++|..+|+.++++..... .......||+||++++.++.....+.+.-.+.
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~L 159 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQWYINQSRMLSPTEREILRFMSRGYSMPQIAEQL 159 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHhhccCcCCCCHHHHHHHHHHHCCCCHHHHHHHH
Confidence 77666666 79999999999999999999998876421110 00113469999999999998776665554443
No 57
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.43 E-value=1.6e-12 Score=139.39 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=108.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+++||||||+...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~-~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAE-MDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 4799999999999999999999999999999999999999988 67999999999999 99999999886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++|+..+.+....+++.||.+||.||++.++|...|++++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 58
>PRK14084 two-component response regulator; Provisional
Probab=99.43 E-value=3.1e-12 Score=126.12 Aligned_cols=113 Identities=15% Similarity=0.346 Sum_probs=98.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G-y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
++||||||++..+..+..+|+..+ +. +..+.++.+++..+.. ..+|+||+|+.|++ ++|+++++.|+ ..+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~-~~G~~~~~~i~~~~~~~~i 77 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMD-ESGIELAAKIQKMKEPPAI 77 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEE
Confidence 479999999999999999998765 53 6689999999999987 67999999999999 99999999997 4668
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+.. +...++++.||.+||.||++.++|..+++++.+..
T Consensus 78 I~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 78 IFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8888764 35678999999999999999999999998876543
No 59
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.42 E-value=8.9e-12 Score=117.29 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=116.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
.++|||||+++..+..+...|+. .++.+. .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ..+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~~~~~~~~l~~~~~~~~ 82 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKG-MSGLDTLNALRRDGVTAQ 82 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCCe
Confidence 46899999999999999999975 478875 79999999998887 67999999999999 99999998886 578
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH-----------hcC----CCcccCCchhhHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF-----------NAG----GSALSDSLKPVKESVV 155 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~-----------~~~----~~~~~~~Lt~re~evl 155 (546)
+|+++...+......+++.|+++|+.||++.++|..+++.++.+.. ... .......|++++.+++
T Consensus 83 ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl 162 (215)
T PRK10403 83 IIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVL 162 (215)
T ss_pred EEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHH
Confidence 9999988888889999999999999999999999999887543210 000 1111245788888888
Q ss_pred HHHhhh
Q 009017 156 SMLHLK 161 (546)
Q Consensus 156 ~ll~l~ 161 (546)
.++...
T Consensus 163 ~~~~~g 168 (215)
T PRK10403 163 HELAQG 168 (215)
T ss_pred HHHHCC
Confidence 877554
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.41 E-value=1.6e-12 Score=137.60 Aligned_cols=114 Identities=20% Similarity=0.367 Sum_probs=104.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
..+||||||++..+..+...|.. .+.+..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~-~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFEN-YDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCC-chHhHHHHHHHhccccCCCc
Confidence 57899999999999999999965 4777789999999999888 78999999999999 99999999996 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
||++|+..+.+.+.+|++.||+|||.||++.++|...|....++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776553
No 61
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.40 E-value=2.2e-12 Score=127.56 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=109.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell-r~Lr----~i 89 (546)
.+.+|+||||++.++..|+.+|+. ++. +..+.++.++++.+. .|||||+|+.||+ .+|++++ +.++ .+
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~-~~G~~~~~~~i~~~~p~~ 82 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEAD-KKLIHYWQDTLSRKNNNI 82 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCC-ccHHHHHHHHHHHhCCCC
Confidence 356799999999999999999984 455 447889999988743 3899999999999 9999986 4454 68
Q ss_pred cEEEEecCCChHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHHHH-----------hcC-----CCcccCCchhhH
Q 009017 90 PTIITSNIHCLSTMMKCIA--LGAVEFLRKPLSEDKLRNLWQHVVHKAF-----------NAG-----GSALSDSLKPVK 151 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~--aGAdDYL~KP~~~eeL~~~I~~vlrr~~-----------~~~-----~~~~~~~Lt~re 151 (546)
+||++|...+ ....++. .||.+||.|..+.++|.++|+.++++.. ... .......|++||
T Consensus 83 ~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE 160 (216)
T PRK10100 83 KILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE 160 (216)
T ss_pred cEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHH
Confidence 9999999876 3445555 4999999999999999999987764321 110 001134589999
Q ss_pred HHHHHHHhhhhccch
Q 009017 152 ESVVSMLHLKLENGE 166 (546)
Q Consensus 152 ~evl~ll~l~~~l~~ 166 (546)
++++.++.......+
T Consensus 161 ~~Vl~l~~~G~s~~e 175 (216)
T PRK10100 161 KEILNKLRIGASNNE 175 (216)
T ss_pred HHHHHHHHcCCCHHH
Confidence 999998876554443
No 62
>PRK13435 response regulator; Provisional
Probab=99.40 E-value=5.9e-12 Score=114.04 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC---CC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DL 89 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr---~i 89 (546)
+.+++|||+|++......+...|+..||.++ .++++.++++.+.. ..||+||+|+.++ + .+|+++++.++ .+
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~-~~~~~~~~~l~~~~~~ 79 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADG-PTGVEVARRLSADGGV 79 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCC-CcHHHHHHHHHhCCCC
Confidence 3468999999999999999999998899977 78999999998877 6799999999997 5 78999998886 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|+|++++..+ ...++..|+++|+.||++.++|...|+++..+.
T Consensus 80 pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 80 EVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred CEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 9999987543 246788999999999999999999988776543
No 63
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.39 E-value=3.4e-12 Score=148.45 Aligned_cols=117 Identities=20% Similarity=0.205 Sum_probs=107.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~-~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPD-YDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 56899999999999999999999999999999999999988642 46899999999999 99999999997 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++|+..+.....++++.|+++||.||++.++|..+|.++++..
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999887643
No 64
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.39 E-value=4.1e-12 Score=148.44 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=107.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----C---C
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D---L 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~---i 89 (546)
..+||||||++..+..+..+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ . +
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~-~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPD-GDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCC-CCHHHHHHHHHhCccccCCC
Confidence 4589999999999999999999999999999999999999988 78999999999999 99999999997 2 8
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||++|+..+.+...++++.|+++||.||++.++|...|..++.
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998887654
No 65
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.38 E-value=4.7e-12 Score=136.45 Aligned_cols=111 Identities=20% Similarity=0.343 Sum_probs=101.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC----CCCHHHHHHHhC----CCcE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK----DLPT 91 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~----~~dGlellr~Lr----~iPI 91 (546)
||||||++..+..+...| .||.|..+.++.+|++.+.. ..||+||+|+.||+ .++|+++++.++ ++||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 78999999999999999988 78999999999994 168999999886 6899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|++|+..+.+...++++.||+|||.||++.++|..+|++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999998877653
No 66
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.38 E-value=3e-11 Score=102.17 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=103.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
.++|++++++......+...|+..|++ +..+.+..+++..+.. ..+|++++|..+++ .+|+++++.++ .+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~-~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPN-MDGLELLKTIRADGAMSAL 81 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCC-CCHHHHHHHHHhCCCcCCC
Confidence 478999999999999999999988885 7789999999998877 67999999999999 99999998886 37
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|+++...+......+++.|+++|+.||++.++|..++++++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 899999888888899999999999999999999999998887654
No 67
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.38 E-value=5.4e-12 Score=151.10 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=108.6
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
+...++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~i~~~~~~~ 1031 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPN-MDGFELTRKLREQNSSL 1031 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 3345789999999999999999999999999999999999999988 78999999999999 99999999987 58
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||++|+..+.....++++.|+++||.||++.++|..+|+++..
T Consensus 1032 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887654
No 68
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.38 E-value=1.3e-11 Score=130.69 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPI 91 (546)
.+||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCE
Confidence 589999999999999999999889999999999999999988 68999999999999 99999999986 4799
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+.....++++.||++||.||++.++|..+++.+++..
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877543
No 69
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.37 E-value=7.4e-12 Score=135.44 Aligned_cols=112 Identities=27% Similarity=0.368 Sum_probs=105.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLS 95 (546)
||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||++|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~-~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPG-EDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHHhCCCCeEEEEe
Confidence 6899999999999999999999999999999999999988 68999999999999 99999999886 68999999
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
+..+.....+++++|+++||.||++.++|..+|++++..
T Consensus 78 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 78 AHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654
No 70
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=9.7e-12 Score=129.85 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=95.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHh-hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLE-AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le-~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPII 92 (546)
++||||||+...+..+..+|+ ..+|.++ .+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~-~~G~e~l~~l~~~~~~pvi 77 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPR-MDGVEATRRIMAERPCPIL 77 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCC-CCHHHHHHHHHHHCCCcEE
Confidence 489999999999999999995 5688876 78999999999988 78999999999999 99999999986 58999
Q ss_pred EEecCCC--hHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHHHHH
Q 009017 93 ITSNIHC--LSTMMKCIALGAVEFLRKPL---------SEDKLRNLWQHVV 132 (546)
Q Consensus 93 vLSs~~d--~e~i~~Al~aGAdDYL~KP~---------~~eeL~~~I~~vl 132 (546)
++++..+ .....++++.|+++||.||+ ..++|+.+|+.+.
T Consensus 78 vvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 78 IVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 9998643 56677899999999999999 3445555554433
No 71
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.36 E-value=8.8e-12 Score=143.11 Aligned_cols=114 Identities=17% Similarity=0.258 Sum_probs=103.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------C-C
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D-L 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~-i 89 (546)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ . .
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~-~~G~e~~~~ir~~~~~~~~~ 601 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPD-MTGLDIARELRERYPREDLP 601 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhccccCCCC
Confidence 5789999999999999999999999999999999999999987 78999999999999 99999999997 2 4
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+.... ....+++.|+++||.||++.++|..+|++++..
T Consensus 602 ~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 602 PLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred cEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 88888887654 467899999999999999999999999887643
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.32 E-value=2.6e-11 Score=127.42 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iP 90 (546)
++++||||||+...+..+...|+.. ++.++ .+.++.+++..+.. ..||+||+|+.|++ ++|+++++.|+ .+|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~-~dgle~l~~i~~~~~~p 78 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPV-MDGLDALEKIMRLRPTP 78 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCC-CChHHHHHHHHHhCCCC
Confidence 4579999999999999999999876 88877 89999999999988 78999999999999 99999999886 589
Q ss_pred EEEEecCC--ChHHHHHHHHcCCCEEEeCCCC
Q 009017 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPLS 120 (546)
Q Consensus 91 IIvLSs~~--d~e~i~~Al~aGAdDYL~KP~~ 120 (546)
+|++|+.. +.....++++.|++|||.||++
T Consensus 79 iIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 79 VVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 99998753 3466778999999999999994
No 73
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=5.2e-11 Score=124.82 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=91.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPI 91 (546)
+++||||||....|..|+++|...+ .+ |.++.|+.+|++.+.. ..||+|++|+.||. |||+++++.|. .+||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~-mdgl~~l~~im~~~p~pV 77 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPV-MDGLEALRKIMRLRPLPV 77 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEeccccc-ccHHHHHHHHhcCCCCcE
Confidence 4799999999999999999999987 55 5599999999999999 88999999999999 99999999885 6999
Q ss_pred EEEecCCC--hHHHHHHHHcCCCEEEeCCCC
Q 009017 92 IITSNIHC--LSTMMKCIALGAVEFLRKPLS 120 (546)
Q Consensus 92 IvLSs~~d--~e~i~~Al~aGAdDYL~KP~~ 120 (546)
||+++... .+...+|+++||.||+.||..
T Consensus 78 imvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 78 IMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 99987543 567889999999999999974
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.27 E-value=3.4e-11 Score=135.86 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=101.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.++||||||++..+..+..+|...||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.|+ ++|||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~-~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDG-FDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCC-CcHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999889999999999999999887 67999999999999 99999999997 59999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSED--KLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~e--eL~~~I~~vlr 133 (546)
++|+..+.+...++++.|+.+||.||.+.. .+..+++.++.
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 999999999999999999999999997643 55555555544
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.18 E-value=2e-10 Score=110.80 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=101.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPII 92 (546)
.++||++||+...+..+...|...||.++ ++.++.++...+.. ..||+||+|+.+|. .|-++-+.... ..|||
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~-rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPR-RDIIEALLLASENVARPIV 81 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCC-ccHHHHHHHhhcCCCCCEE
Confidence 57999999999999999999999999966 88888899998888 78999999999999 77443333332 57899
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
++|++++...+..++++|+.+||+||++...|+..+.-+..+..
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887766544
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.16 E-value=5.7e-10 Score=110.59 Aligned_cols=114 Identities=13% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPII 92 (546)
..+|||+||+...+..+...|+..|+.+. .+.++.+++..+.. ..+|+||+|+.|++..+|+++++.++ .+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998899987 78999999999987 68999999999984168999998886 59999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|+..+... .+...|+.+||.||++.++|...|++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999766443 344567899999999999999998876643
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.13 E-value=7.9e-10 Score=88.86 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=96.3
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEec
Q 009017 21 LLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSN 96 (546)
Q Consensus 21 LIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs 96 (546)
|+++++...+..+...|...|+.+..+.+..+++..+.. ..+|++|+|..+++ .+|+++++.++ .+++|+++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~~ 77 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPG-MDGLELLRRIRKRGPDIPIIFLTA 77 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCC-CchHHHHHHHHHhCCCCCEEEEEe
Confidence 478999999999999999889999999999999998887 68999999999999 89999988875 588999988
Q ss_pred CCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 97 IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 97 ~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
..+......++..|+.+|+.||++..+|...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred cccHHHHHHHHHcChhhHccCCCCHHHHHHHHHh
Confidence 8778888899999999999999999999887764
No 78
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.09 E-value=1.1e-09 Score=127.43 Aligned_cols=115 Identities=24% Similarity=0.303 Sum_probs=103.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+.+||||||++..+..+...|+..||+|+.+.++.++++.+......||+||+ .|++ ++|+++++.|+ .+|||
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~-~~g~~l~~~l~~~~~~ipII 773 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRL-LDEEQAAAALHAAAPTLPII 773 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 46899999999999999999999999999999999999998762234899999 6889 99999999886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++++..+.....+++..| ++||.||++..+|..+|++++++.
T Consensus 774 vls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 774 LGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 999999888999999999 999999999999999998877643
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.01 E-value=3.9e-09 Score=114.27 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+.+||||||+...+..+..+|+..||.+..+.++.+++..+... ..||+||+|..+++.++|+++++.|+ .++||
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 46899999999999999999999999999999999999998651 35999999999983168999999886 58999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+++...+......++..|+.+|+.||++.++|..+++.++.
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 99998888888889999999999999999999998877654
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=98.98 E-value=3e-09 Score=110.01 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=78.8
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEeCCC-C
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL-S 120 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~-~ 120 (546)
.+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++|+..+.+.+.+++++||+|||.||+ +
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~-~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~ 78 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPR-MNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKD 78 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCc
Confidence 47889999999988 78999999999999 99999999987 58999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHHHH
Q 009017 121 EDKLRNLWQHVVHKA 135 (546)
Q Consensus 121 ~eeL~~~I~~vlrr~ 135 (546)
.++|..+|.++++..
T Consensus 79 ~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 79 LNRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHHhhhh
Confidence 899999888776543
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.89 E-value=1.1e-08 Score=117.19 Aligned_cols=115 Identities=10% Similarity=0.117 Sum_probs=91.3
Q ss_pred EEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH----HHHHHh
Q 009017 19 RVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF----KFLETA 86 (546)
Q Consensus 19 rILIVDDD~~--------~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl----ellr~L 86 (546)
+|||||||.. +++.|+..|+..||+|..+.++.+|+..+... ..||+||+|+.||+ ++|+ ++++.|
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd-~dG~~~~~ell~~I 79 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEH-PDEHQNVRQLIGKL 79 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCC-CccchhHHHHHHHH
Confidence 7999999995 69999999999999999999999999999762 37999999999999 9997 898888
Q ss_pred C----CCcEEEEecCCC--hHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHHHH
Q 009017 87 K----DLPTIITSNIHC--LSTMMKCIALGAVEFLRKPLSEDKLR-NLWQHVVHKAF 136 (546)
Q Consensus 87 r----~iPIIvLSs~~d--~e~i~~Al~aGAdDYL~KP~~~eeL~-~~I~~vlrr~~ 136 (546)
| ++|||++|+..+ .......++. +++|+.+--+..++. .+|....++..
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLEL-VDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHHh-hheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 7 699999999886 3333343333 688888876655553 44555555443
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.81 E-value=2.6e-08 Score=100.40 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=97.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
|++|+++||++..++.+..++... .+++. .+.++.++++.+.. ..+|++++|+.|++ ++|+++.+.|+ ..+
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~-~~G~ela~~i~~~~~~~~ 77 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPD-INGIELAARIRKGDPRPA 77 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCc-cchHHHHHHhcccCCCCe
Confidence 478999999999999999999843 33333 78999999999998 78999999999999 99999999998 377
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|+++|++. +.+..+++..|.|||.||++.+.|...+.++.+.
T Consensus 78 Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 78 IVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 88899864 4667788999999999999999999999877665
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.13 E-value=2.6e-05 Score=91.02 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH-HhC-----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE-TAK-----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr-~Lr-----~i 89 (546)
.+.+|+|+||++..+..+..+|+..||.|..+.+..+ +.. ..||++|+|+.+++ ..+...+. .++ ..
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~-~~~~~~~~~~~~~~~~~~~ 607 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTF-REPLTMLHERLAKAKSMTD 607 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCC-CCCHHHHHHHHHhhhhcCC
Confidence 3579999999999999999999999999999988887 344 57999999999998 66655443 332 35
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
++|+++...+......+.+.|+++|+.||+...+|...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 6788888888888899999999999999999999998887544
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.64 E-value=4.9e-05 Score=82.53 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=80.2
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCC
Q 009017 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL 119 (546)
Q Consensus 42 y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~ 119 (546)
++|.++..+.+++..+.. ..+|++|+|+.||+ ++|+++++.++ ...++++|...+.....+.+++|+++||.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~-~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPG-MDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCC-cCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 567789999999999998 88999999999999 99999999998 34478899988888999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 009017 120 SEDKLRNLWQHVVHK 134 (546)
Q Consensus 120 ~~eeL~~~I~~vlrr 134 (546)
+...+..+.....+.
T Consensus 90 ~~~~~~~r~~~l~~~ 104 (435)
T COG3706 90 NDSQLFLRAKSLVRL 104 (435)
T ss_pred ChHHHHHhhhhhccc
Confidence 999998887766543
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.56 E-value=0.00053 Score=47.50 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=48.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
++|++++++...+..+...+...|+.+..+.+..+++..+.. ..+|++++|+.+
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~ 54 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMM 54 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccC
Confidence 369999999999999999999899999999999999998877 679999999865
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.26 E-value=0.002 Score=57.32 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=70.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvL 94 (546)
||||||||...+..|..+|+-.|+++..+++.+- ...... ...+.+++...-.. ...++++.+. .+|||++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999888876444 233333 33454444332111 1234555442 7999999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
.......... .+.+-|..|++..+|.+.++++
T Consensus 76 g~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 8766551111 1666789999999999987764
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.69 E-value=0.027 Score=50.84 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=76.2
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC----CCcEEEEe
Q 009017 24 DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITS 95 (546)
Q Consensus 24 DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr----~iPIIvLS 95 (546)
|.+..-...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+...+..... --++++.|+ .-..|++.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 56666667788889999999884 4567888888888 78999999887754111 123455554 23455666
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
+..-.+...++.++|+++|+..-.+.++.+..|+
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 6556667788889999999999999888887654
No 88
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.69 E-value=0.037 Score=51.32 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=84.0
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC
Q 009017 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK 87 (546)
Q Consensus 16 ~~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr 87 (546)
+..+||+. |.+..-...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+...+.... ...++++.|+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 45688888 77777778889999999999884 4568889999888 7899999998876511 1234555554
Q ss_pred -----CCcEEEEecCC------ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 88 -----DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 -----~iPIIvLSs~~------d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+++ |++.+.. ..+...++.+.|++.++....+.+++...|++.+
T Consensus 80 ~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 80 EAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred hcCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 443 4444432 3445567889999999998899999998877654
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.66 E-value=0.064 Score=49.49 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=80.7
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--
Q 009017 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (546)
Q Consensus 18 ~rILIV----DDD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr-- 87 (546)
.||++. |-+..-...+..+|+..||+|+ ...+.+++++...+ ..+|+|.+...+...+.. -++++.|+
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455543 5566666788899999999988 46688899999888 789999997766431111 12344444
Q ss_pred --CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 --~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
....|++.+..-.+......++|+++|+..--+..+++..+...+.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1234555544455667788999999999998999999888777554
No 90
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.30 E-value=0.008 Score=45.40 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=42.0
Q ss_pred cCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHH
Q 009017 306 QNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 356 (546)
Q Consensus 306 ~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr 356 (546)
|.+||.+=+.+|++||++.|.+ .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 3589999999999999999976 6788999998 8999999999999985
No 91
>PLN03162 golden-2 like transcription factor; Provisional
Probab=96.00 E-value=0.026 Score=59.62 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=61.7
Q ss_pred ccccCCCCC-----CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC----CCCC
Q 009017 418 AVQMWAPPG-----YPPWQQA-----ESWNWKPYPGMPADAWGCPVMPLP---NGPYSSFPQGASGYHNSGV----DDNS 480 (546)
Q Consensus 418 ~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~ 480 (546)
.+|+|++|. .+.|+-+ .+| . ..+..+|.+|++.-+ .|||. |+++.+|..+.. .-|.
T Consensus 358 PLhVWGhPtvd~s~v~mWp~h~~~~p~pW--~---~~Dp~fW~h~~~~~~a~~gtpc~--p~pm~Rfp~ppv~~G~p~~~ 430 (526)
T PLN03162 358 PLKVWGYPTVDHSNVHMWQQPAVATPSYW--Q---AADGSYWQHPATGYDAFSARACY--PHPMQRVPLGTTHAGLPIMA 430 (526)
T ss_pred cceeccCCCCCCcccccccccccCCCCCC--C---CCCcchhhcccccCccccCCccc--CchhhhCCCCCCCCCCcccc
Confidence 579999643 5678643 244 2 245568999998743 26664 445556655433 2233
Q ss_pred CCCCCCc---------ccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHH
Q 009017 481 YAMPQNS---------VDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSV 524 (546)
Q Consensus 481 ~~~~~~~---------~~~~~~~e~~d~~~~~~~~~p~~p~p~glk~p~~~~v 524 (546)
.++|..+ ...++-+.+.|.-||..+--+=..+||-.-| |-++|
T Consensus 431 P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp-SkEsi 482 (526)
T PLN03162 431 PGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGVAACSKPIETHL-SKEVL 482 (526)
T ss_pred CCCCchhhcccccchhhcccccccccccccccccchhhcccccccCc-cHHHH
Confidence 3344322 2234667889999999998888888888765 44444
No 92
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.89 E-value=0.054 Score=48.52 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC----CCcEEEEecCCChHHH
Q 009017 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLPTIITSNIHCLSTM 103 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr----~iPIIvLSs~~d~e~i 103 (546)
....|...|+..||+|+.+.+.++++..++.. ..++.||+|+. .+. ....++++.++ .+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 34567888888999999999999999999985 57899999987 110 12346777775 7999999987655544
Q ss_pred HHHHHcCCCEEEeCCCCHHHH-HHHHHHHHH
Q 009017 104 MKCIALGAVEFLRKPLSEDKL-RNLWQHVVH 133 (546)
Q Consensus 104 ~~Al~aGAdDYL~KP~~~eeL-~~~I~~vlr 133 (546)
-..+-..+++|+-..-+..++ ..+|.++.+
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 445555688999887655444 455655544
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.43 E-value=0.13 Score=45.77 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=64.0
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC---C-CcEEEEe
Q 009017 24 DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK---D-LPTIITS 95 (546)
Q Consensus 24 DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr---~-iPIIvLS 95 (546)
|.+..=...+..+|+..||+|.. ..+.++.++.+.+ ..||+|.+...+... ....++++.++ . -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 55666667889999999999864 3467788888888 789999998876541 12344555555 2 3456676
Q ss_pred cCCChHHHHHHHHcCCCEEEeC
Q 009017 96 NIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~K 117 (546)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 6655554557889999777763
No 94
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.89 E-value=0.12 Score=61.73 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
.+.+||||||++..+..+..+|+..|++|..+.++ +.. ..||+||+|+.+
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS--QEYDIFLTDNPS 737 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC--CCCCEEEECCCC
Confidence 46799999999999999999999999999988763 234 579999999984
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.72 E-value=0.25 Score=57.38 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=75.7
Q ss_pred CEEEEEeCCH-H-----HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 18 LRVLLLDQDS-S-----AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 18 ~rILIVDDD~-~-----~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
|+|+||+++- . ....|.+.|++.||+|..+.+..+++..++.. ...+.||+|++. ...++++.++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDE----YSLDLCSDINQLNE 75 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEeccc----chHHHHHHHHHhCC
Confidence 4688887773 1 24567778888999999999999999988864 578999999642 2344666665
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS-EDKLRNLWQHVVHKAF 136 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~-~eeL~~~I~~vlrr~~ 136 (546)
++||+++........+-...-.-+++|+..-.+ .+.+...|.+..++..
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (713)
T PRK15399 76 YLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYL 125 (713)
T ss_pred CCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHH
Confidence 799999877543333222233335667665443 4444455666665544
No 96
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.60 E-value=0.55 Score=43.62 Aligned_cols=107 Identities=6% Similarity=0.006 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC----CCcEEEEec
Q 009017 25 QDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK----DLPTIITSN 96 (546)
Q Consensus 25 DD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr----~iPIIvLSs 96 (546)
-+..=...+..+|+..||+|+ ...+.++.++...+ ..+|+|-+...|...+.. -++++.|+ .-++|++-+
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 334444678889999999988 56788999999988 789999998877652222 23444554 224455655
Q ss_pred C-----CChH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 97 I-----HCLS-TMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 97 ~-----~d~e-~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. .+.. ...++.+.|++..+...-..+++.+.|++.++
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 1222 24568899999999988899999998877653
No 97
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.29 E-value=1.1 Score=42.05 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=80.8
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH----
Q 009017 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE---- 84 (546)
Q Consensus 16 ~~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr---- 84 (546)
...||||. |.+..-...+.+.|+..||+|+ .+.+.+|+++...+ +..|+|.+...-. ...+++.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g---~h~~l~~~lve 85 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDG---GHLTLVPGLVE 85 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccc---hHHHHHHHHHH
Confidence 45677765 7788888999999999999988 68899999998876 6789888865422 2344444
Q ss_pred HhC---CCcE-EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 85 TAK---DLPT-IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 85 ~Lr---~iPI-IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.++ --.| +++-+.-..+...+..+.|++.++.--.+..+.+..+...+.
T Consensus 86 ~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 86 ALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 344 1223 345555556667777789999999988888777776655443
No 98
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.07 E-value=0.34 Score=56.26 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=74.6
Q ss_pred CEEEEEeCCH------HHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 18 ~rILIVDDD~------~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
|+||||+++- ...+.|...|++.||+|+.+.+..+++..++.. ...+.||+|++. ...++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK----YNLELCEEISKMNE 75 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch----hhHHHHHHHHHhCC
Confidence 4677787662 124567778888999999999999999988864 578999999632 2244676665
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS-EDKLRNLWQHVVHKAF 136 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~-~eeL~~~I~~vlrr~~ 136 (546)
++||+++........+-...-.-+++|+..--+ .+.+...|.+..++..
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (714)
T PRK15400 76 NLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYI 125 (714)
T ss_pred CCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 799999877543332222222235666664333 4455555666665544
No 99
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=94.04 E-value=0.15 Score=53.27 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH-h-CCCcEEEEe-cCCChHHHHHHHHcCCCEEEeC
Q 009017 41 DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-A-KDLPTIITS-NIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 41 Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~-L-r~iPIIvLS-s~~d~e~i~~Al~aGAdDYL~K 117 (546)
|.++..+.+..++-..... -.+|++|..+-. .+++. + +...+|++. ...+.+....|+++||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~-----~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWAR----APLVLVDADMAE-----ACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhcccc----CCeEEECchhhh-----HHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 4566677776666554443 478999875532 22222 2 244455454 4567889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 009017 118 PLSEDKLRNLWQHV 131 (546)
Q Consensus 118 P~~~eeL~~~I~~v 131 (546)
|++..+|...+.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988765
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.28 E-value=2.4 Score=39.09 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-----CCcEEEEec
Q 009017 26 DSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-----DLPTIITSN 96 (546)
Q Consensus 26 D~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr-----~iPIIvLSs 96 (546)
+..=...+..+|+..||+|+ ...+.++.++...+ ..+|+|.+...|...+.. -++++.|+ +++ |++.+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-vivGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYVGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEEEC
Confidence 33444678888999999988 56688899999888 789999998877652222 23444443 444 44444
Q ss_pred CC-----C-hHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 97 IH-----C-LSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 97 ~~-----d-~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
.. + .+...++.++|++..+...-+++++...|+
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 31 2 334566889999999998888888887654
No 101
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=91.04 E-value=1.1 Score=40.91 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=75.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-----HHHHhC--CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-----FLETAK--DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-----llr~Lr--~i 89 (546)
+.+.+.||.+...+.....+|.+.+.+|+.-.+ +..+-. ..||++|+.+-.+- .+.+. +.+.+. +.
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~--~hYD~~Ll~vavtf-r~n~tm~~~~l~~Al~mtd~ 83 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPP--AHYDMMLLGVAVTF-RENLTMQHERLAKALSMTDF 83 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEeccc----ccccCh--hhhceeeecccccc-cCCchHHHHHHHHHHhhhcc
Confidence 468999999999999999999999999986443 344444 57999999997765 33332 334444 44
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
-|+.+-+ .....+.+..+.|+.++|.||++...|+..+
T Consensus 84 vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 84 VILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred eEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 4444433 3344566788899999999999998888743
No 102
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.02 E-value=3.1 Score=48.66 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr- 87 (546)
..+|+|. |.+..-...+..+|+..||+|.. +.+.+++.+...+ ..+|+|++...+...+ ..-.+++.|+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3466654 44555567788889999999973 4578899898888 6799988876554311 1234566666
Q ss_pred -CCc-E-EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 -DLP-T-IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 -~iP-I-IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
..+ | |++.+..-.+....+.++|+++||.--.+..+++..+++.+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 222 4 455554234444667889999999999999888888777664
No 103
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.99 E-value=1.9 Score=37.76 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhCC---CcEEEEecC
Q 009017 25 QDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAKD---LPTIITSNI 97 (546)
Q Consensus 25 DD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr~---iPIIvLSs~ 97 (546)
-.+.-...+..+|++.||+|..+ .+.++..+.+.. ..||+|.+...+.... ...++++.++. -.+|++.+.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 34566788999999999999866 345777788888 7899999988443202 23445555551 235556665
Q ss_pred CChHHHHHHHH--cCCCEEEeC
Q 009017 98 HCLSTMMKCIA--LGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~--aGAdDYL~K 117 (546)
.-...-..+++ .|+|..+.-
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEEE
T ss_pred chhcChHHHhccCcCcceecCC
Confidence 54445555565 676666554
No 104
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.75 E-value=1.8 Score=50.26 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=15.5
Q ss_pred CCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 009017 512 LPLGLKPPSADSVLAELSRQGISTIPPR 539 (546)
Q Consensus 512 ~p~glk~p~~~~v~~el~~~g~~~~p~~ 539 (546)
||.||||=-+=-|=.-+.|-.-++|=|+
T Consensus 610 lP~gLkpKK~~k~e~~Mrr~nW~kI~p~ 637 (1102)
T KOG1924|consen 610 LPFGLKPKKVYKPEVPMRRFNWSKIVPR 637 (1102)
T ss_pred CCCCCCccccCCCCCccccCCccccCcc
Confidence 6889988554444344444444444443
No 105
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.97 E-value=5.1 Score=40.93 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=70.2
Q ss_pred CEEEEEeCCHHHHHHHHHH------HhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCH---HH
Q 009017 18 LRVLLLDQDSSAAAELKFK------LEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----NTDGS---FK 81 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~------Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp-----~~~dG---le 81 (546)
+|+=|+.|+......+.+. |-+.||.|. ++.|...|-++ .. ..+++| || ++.-| .+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l-~~--~G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRL-ED--AGCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-HH--cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 5666776665443333333 334599987 44455555444 44 356777 55 10112 46
Q ss_pred HHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 009017 82 FLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 82 llr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vlrr 134 (546)
+++.|+ ++|||+=.+-...+++.++++.||+.++. |--++..+..++...+..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 677665 68999888888999999999999999975 445566666666666554
No 106
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.23 E-value=4.9 Score=39.31 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr- 87 (546)
..+||+. |-+..=...+..+|+..||+|+.. ...++.++.+.+ ..||+|.+...+..... ..++++.++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 3578777 677776788899999999998743 367888888888 78999999987765211 234455554
Q ss_pred -----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 -----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 -----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+++ |++.+..-... -+-..|||.|-.
T Consensus 160 ~~~~~~~~-i~vGG~~~~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVK-VMVGGAPVNQE--FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCe-EEEECCcCCHH--HHHHcCCcEEEC
Confidence 233 44555433332 356679988875
No 107
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.54 E-value=3.8 Score=40.82 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=65.5
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr- 87 (546)
.-+|++. |.+..=...+..+|+..||+|+.. ...++.++.+.+ ..+|+|.+...|+..+.. .++++.|+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 3577777 677777788888899999999843 357888888888 789999999888752222 34555555
Q ss_pred ---CCcEEEEecCCChHHHHH---HHHcCCCEEEeC
Q 009017 88 ---DLPTIITSNIHCLSTMMK---CIALGAVEFLRK 117 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~i~~---Al~aGAdDYL~K 117 (546)
+++|++=-.--+.+.... +-..|||.|-.-
T Consensus 166 ~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 166 RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 455554333333333322 234688877653
No 108
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.50 E-value=7.2 Score=33.60 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=53.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE------CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CC
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTF------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DL 89 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~a------ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~i 89 (546)
+||||.........++..+++.|+..... ......+...-. ..|+||+=.+.-. -+....++... ++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~---~aD~VIv~t~~vs-H~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK---KADLVIVFTDYVS-HNAMWKVKKAAKKYGI 76 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC---CCCEEEEEeCCcC-hHHHHHHHHHHHHcCC
Confidence 48999997788889999999999998877 222222333222 4688887665544 33444444442 78
Q ss_pred cEEEEecCCChHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCI 107 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al 107 (546)
|+++.-+. ....+.+++
T Consensus 77 p~~~~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 77 PIIYSRSR-GVSSLERAL 93 (97)
T ss_pred cEEEECCC-CHHHHHHHH
Confidence 98876533 344455544
No 109
>PRK00208 thiG thiazole synthase; Reviewed
Probab=85.98 E-value=14 Score=37.96 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred CEEEEEeCCHHHHHHHHH------HHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC--C---CCCH---HH
Q 009017 18 LRVLLLDQDSSAAAELKF------KLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS--N---TDGS---FK 81 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~------~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp--~---~~dG---le 81 (546)
+|+=|+.|+......+.. .|-+.||.|. ++.|...|-++ .. ..+++| || . +.-| .+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l-~~--~G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL-EE--AGCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-HH--cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 566677665533332222 2334599987 44555555444 44 357777 55 1 0112 45
Q ss_pred HHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 009017 82 FLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 82 llr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vlrr 134 (546)
+++.|+ ++|||+=.+-...+++.++++.||+.++. |--++..+..++...++.
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 666665 68999888889999999999999999975 445566777666666554
No 110
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.37 E-value=8.6 Score=37.90 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-------CCCCCCHHHHHHHhC---CCcEEEEecCC
Q 009017 31 AELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-------TSNTDGSFKFLETAK---DLPTIITSNIH 98 (546)
Q Consensus 31 ~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~-------mp~~~dGlellr~Lr---~iPIIvLSs~~ 98 (546)
..+.+.+++ .+..+. .+.+.+++...... .+|+|.+... ... ...++++++++ ++|||...+-.
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~~i~~i~~~~~iPvia~GGI~ 183 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPE-EPDFALLKELLKAVGCPVIAEGRIN 183 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCC-CcCHHHHHHHHHhCCCCEEEECCCC
Confidence 345555555 566654 66788888655544 5888866421 112 23467788776 68999888888
Q ss_pred ChHHHHHHHHcCCCEEEeC
Q 009017 99 CLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 99 d~e~i~~Al~aGAdDYL~K 117 (546)
+.+.+.++++.||+.++.=
T Consensus 184 t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 184 TPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999998764
No 111
>PRK15320 transcriptional activator SprB; Provisional
Probab=84.16 E-value=6.5 Score=39.18 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=67.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH---HHHHHhCCCcEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF---KFLETAKDLPTII 93 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~--Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl---ellr~Lr~iPIIv 93 (546)
+|+|-.+.=...-.+..++++. |..|.+|.+....+..++. .||.+++=.--|. ..-+ .+...+.+-+|++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~-eh~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPH-EHVYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCch-hHHHHHHHHHHHcCCCceEE
Confidence 5778888877777888888875 6778899999999999887 5665444333343 2221 2333445889999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
++..--..+..-..-.|+.||+.| +||..+|+
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~ 110 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLK----DELSCAIR 110 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHH----HHHHHHhc
Confidence 987543333333335688888877 55555553
No 112
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=83.79 E-value=7.9 Score=41.56 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=67.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE---------------EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---------------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~---------------V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle 81 (546)
..+++||-+.+.....+.+.+++.|.. |.......+...++.. -|++++--...+ ..|..
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e-~~g~~ 336 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVK-RGGHN 336 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCC-CCCCC
Confidence 357788888776556777887776654 2333334455555554 588776434333 34566
Q ss_pred HHHHhC-CCcEEEEecCCChHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 82 FLETAK-DLPTIITSNIHCLSTMMKCI-ALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 82 llr~Lr-~iPIIvLSs~~d~e~i~~Al-~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+++.+. .+|||+-....+...+.+.+ +.| ++..+-+.++|.++|..++.
T Consensus 337 ~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g---~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAAFGVPVISGPHTFNFKEIFERLLQAG---AAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHhCCCEEECCCccCHHHHHHHHHHCC---CeEEECCHHHHHHHHHHHhc
Confidence 777776 89998633323444444443 333 56667899999999888764
No 113
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=83.53 E-value=4.4 Score=41.60 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=70.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvL 94 (546)
.|-+.-.++.+...+...|....|.+..+.+.++.++.+....+.+|++|+...... ..++..|. -+|+|++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~----~~~~~~L~e~g~LLPaVil 77 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL----PPLFNQLYEQGILLPAVIL 77 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT----HHHHHHHHHCT----EEEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc----HHHHHHHHHcCccccEEEE
Confidence 456666778899999999998889999999999999999876578999999876544 56666665 4899998
Q ss_pred ecCCChHHHHHHHHcCCC-----EEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 009017 95 SNIHCLSTMMKCIALGAV-----EFLRKPLSEDKLRNLWQHVVHKAFNAG 139 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAd-----DYL~KP~~~eeL~~~I~~vlrr~~~~~ 139 (546)
........ .-..|.. ..-...-..++|-..|.+++.+.....
T Consensus 78 ~~~~s~~~---~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrFL~l~ 124 (283)
T PF07688_consen 78 GSSESAST---TSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRFLRLG 124 (283)
T ss_dssp S---S--T---TS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHHHHH-
T ss_pred ecCccccc---CCCCCceeeehHheEccHHHHHHHHHHHHHHHHHHHhhC
Confidence 66322110 0012333 333444446777777777777665543
No 114
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.31 E-value=17 Score=35.13 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHhC---C-CcEEEEecCCChHHHHHHHH
Q 009017 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIA 108 (546)
Q Consensus 41 Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-------~dGlellr~Lr---~-iPIIvLSs~~d~e~i~~Al~ 108 (546)
+..+. .+.+..++.+.... ..|+|.++-..+.. ..|++.++.++ . +||++..+- +.+.+.++++
T Consensus 104 ~~~~g~~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~ 179 (212)
T PRK00043 104 DAIIGLSTHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE 179 (212)
T ss_pred CCEEEEeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH
Confidence 44433 55677777776654 58999887555431 13477777764 4 898877665 6788889999
Q ss_pred cCCCEEEe
Q 009017 109 LGAVEFLR 116 (546)
Q Consensus 109 aGAdDYL~ 116 (546)
+||+.+..
T Consensus 180 ~Ga~gv~~ 187 (212)
T PRK00043 180 AGADGVAV 187 (212)
T ss_pred cCCCEEEE
Confidence 99999975
No 115
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.19 E-value=17 Score=31.59 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=56.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHh-hcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L-~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
+||.||.--..-+..+..++.. .+++++ .++...+..+.+ +. .... +.. +--++++.- ++-+|++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~--~~~~-~~~--------~~~~ll~~~-~~D~V~I 68 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK--YGIP-VYT--------DLEELLADE-DVDAVII 68 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH--TTSE-EES--------SHHHHHHHT-TESEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH--hccc-chh--------HHHHHHHhh-cCCEEEE
Confidence 3667777666555555566555 456655 444433333332 22 2223 221 222333322 2333333
Q ss_pred ec--CCChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 009017 95 SN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHV 131 (546)
Q Consensus 95 Ss--~~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~v 131 (546)
+. ..-.+.+..+++.|..=|+-||+ +.+++.+.++.+
T Consensus 69 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp ESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred ecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 33 33467888999999999999998 677777665543
No 116
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=81.59 E-value=2.1 Score=42.15 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC--CC-CCCHHHHHHHhC-CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--SN-TDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m--p~-~~dGlellr~Lr-~iPII 92 (546)
+++||+||....+.-.|.++|++.|++|.+..+....+..++. ..||.||+.-.- |. ....+++++++. ++||+
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiL 78 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRFAGRIPIL 78 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEE
Confidence 3689999999999999999999999888766655433445555 568999997542 11 012367777764 69998
Q ss_pred EEe
Q 009017 93 ITS 95 (546)
Q Consensus 93 vLS 95 (546)
-+.
T Consensus 79 GVC 81 (191)
T COG0512 79 GVC 81 (191)
T ss_pred EEC
Confidence 665
No 117
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.33 E-value=7.9 Score=37.92 Aligned_cols=95 Identities=12% Similarity=-0.029 Sum_probs=61.6
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--
Q 009017 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (546)
Q Consensus 18 ~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr-- 87 (546)
-+|++. |.+..=...+..+|+..||+|+. -...++.++.+.+ ..||+|.+...|...... .++++.++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356554 44555557778888999999984 3467888899988 789999999988652222 23445554
Q ss_pred ---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.-+.|++.+..-... -+-+.|||.|-.
T Consensus 163 ~~~~~v~i~vGG~~~~~~--~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQD--WADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEEEEChhcCHH--HHHHhCCcEEeC
Confidence 113444555433222 355779998864
No 118
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=79.65 E-value=19 Score=35.53 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=55.1
Q ss_pred HHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C------CCCCCHHHHHHHhC---CCcEEEEecCCCh
Q 009017 33 LKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T------SNTDGSFKFLETAK---DLPTIITSNIHCL 100 (546)
Q Consensus 33 L~~~Le~~G-y~V~-~ass~~eALe~L~~~~~~pDLVIlDl~-m------p~~~dGlellr~Lr---~iPIIvLSs~~d~ 100 (546)
+.+.+++.+ ..+. .+.+.+++...... .+|+|.+... . .. ...+++++.++ ++||+...+-.+.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~~l~~i~~~~~ipvia~GGI~~~ 189 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTE-DPDFELLKELRKALGIPVIAEGRINSP 189 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCC-CCCHHHHHHHHHhcCCCEEEeCCCCCH
Confidence 333444444 5543 66778888666554 5788765321 1 11 23467777776 6899998888889
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+.+.++++.||+.++.-
T Consensus 190 ~~~~~~l~~GadgV~vG 206 (219)
T cd04729 190 EQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999998864
No 119
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.45 E-value=19 Score=31.10 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=53.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass-~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.+|++||.++...+. +...|+.++..+- -.+.++.+.- ...+.||+...-.. ..+.++..++ ..+||
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d~--~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDDE--ENLLIALLARELNPDIRII 93 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCCHH--HHHHHHHHHHHHCCCCeEE
Confidence 578999999876433 3455677664332 2445666555 56788888765322 2344444444 46676
Q ss_pred EEecCCChHHHHHHHHcCCCEEEe
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+... +.+....+.++||+..+.
T Consensus 94 ~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEC--CHHHHHHHHHCCcCEEEC
Confidence 6655 555666677789887663
No 120
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=77.60 E-value=19 Score=37.26 Aligned_cols=95 Identities=7% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHH
Q 009017 32 ELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 32 ~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~ 104 (546)
.|++.|..-... +......-.+.+.+.. ..||.|++|++-.. .+--++...++ .+..++=....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~-~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCC-CCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHH
Confidence 466666653322 2222333456676766 56999999998776 66555554443 45555556677889999
Q ss_pred HHHHcCCCEEEeCCCCH-HHHHHHHH
Q 009017 105 KCIALGAVEFLRKPLSE-DKLRNLWQ 129 (546)
Q Consensus 105 ~Al~aGAdDYL~KP~~~-eeL~~~I~ 129 (546)
++++.||.+.+.-=++. ++....++
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 99999999999876654 44444433
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=77.30 E-value=4.7 Score=45.50 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=40.3
Q ss_pred cEEEEecCCChH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLS--TMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e--~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.+|++|+.+... ....+++.++.|+..||+..+++...++..+...
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 488899988766 8889999999999999999999999998877654
No 122
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=77.15 E-value=18 Score=37.10 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHH
Q 009017 31 AELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTM 103 (546)
Q Consensus 31 ~~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i 103 (546)
..|++.|...... +........+.+.+.. ..||.|++|++-.. .+--++...++ .+..++=....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAP-NDVSTFIPQLMALKGSASAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHH
Confidence 4467777654322 2222333466677776 57999999998776 66555554443 4555555666788999
Q ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHHH
Q 009017 104 MKCIALGAVEFLRKPLS-EDKLRNLWQ 129 (546)
Q Consensus 104 ~~Al~aGAdDYL~KP~~-~eeL~~~I~ 129 (546)
.++++.||++++.-=++ .++....++
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 99999999999886554 455554433
No 123
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=76.98 E-value=20 Score=37.63 Aligned_cols=82 Identities=17% Similarity=0.060 Sum_probs=60.1
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC---CCcEEEEecCCChHHHH
Q 009017 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK---DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 33 L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr---~iPIIvLSs~~d~e~i~ 104 (546)
+...|+..|..|. .+.+.++|...... ..|.|++.-.-.+. ..-+.++++++ ++|||+--+-.+...+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 5556666787765 67788888766655 58988884432210 23477888876 69999888888999999
Q ss_pred HHHHcCCCEEEeC
Q 009017 105 KCIALGAVEFLRK 117 (546)
Q Consensus 105 ~Al~aGAdDYL~K 117 (546)
.++..||+....=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999988764
No 124
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=76.55 E-value=24 Score=38.50 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=67.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLS 95 (546)
..+++||.|.+. .+.++++.+.......-.-+.++..+++.. .|++|+=.. .+ .-|+.+++.+. .+|||+..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E-~~g~~vlEAmA~G~PVI~s~ 362 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SE-TLGFVVLEAMASGVPVVAAR 362 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-cc-ccCcHHHHHHHcCCCEEEcC
Confidence 357778876653 445555554433222233345677777766 577775432 33 44677888876 89998543
Q ss_pred cCCChHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIAL---GAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 96 s~~d~e~i~~Al~a---GAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. .. ..+.++. |-.+|+..|-+.++|.++|..++.
T Consensus 363 ~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 363 A-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred C-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3 22 2334455 889999999999999999988774
No 125
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.10 E-value=43 Score=34.65 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=70.5
Q ss_pred CEEEEEeCCH------HHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCC-CCCHH---HHHHH
Q 009017 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSN-TDGSF---KFLET 85 (546)
Q Consensus 18 ~rILIVDDD~------~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~-~~dGl---ellr~ 85 (546)
+|+=|+-|+. .-.-.-.+.|-+.||.|..+. |.--|.++..- .. .+|+=+.-|- +.-|+ ..++.
T Consensus 108 IKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~--Gc--~aVMPlgsPIGSg~Gl~n~~~l~~ 183 (267)
T CHL00162 108 VKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDI--GC--ATVMPLGSPIGSGQGLQNLLNLQI 183 (267)
T ss_pred EEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHc--CC--eEEeeccCcccCCCCCCCHHHHHH
Confidence 5565664332 222233455667899998544 33344343333 22 2344444442 02232 34555
Q ss_pred hC---CCcEEEEecCCChHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 009017 86 AK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 86 Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vlrr 134 (546)
|+ ++|||+=.+-...+++..|++.|+++.+. |--++.++...++.+++.
T Consensus 184 i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 184 IIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 54 69999999999999999999999999854 567788888888777654
No 126
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.99 E-value=47 Score=33.99 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC---CCCCCCHHHHHHHh----C-CCcEEEEecC
Q 009017 27 SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT---TSNTDGSFKFLETA----K-DLPTIITSNI 97 (546)
Q Consensus 27 ~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~---mp~~~dGlellr~L----r-~iPIIvLSs~ 97 (546)
......+.......|..+. .+.+.+|+...... .+|+|-+.-. ... .+ ++.+.++ . ..++|..++-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~-~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFE-VD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCccccc-CC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 3344455555566788854 78899988666544 5787765421 111 12 4444443 2 3578888998
Q ss_pred CChHHHHHHHHcCCCEEEeC
Q 009017 98 HCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~K 117 (546)
.+.+.+.+++++||+.++.-
T Consensus 221 ~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 89999999999999998753
No 127
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.24 E-value=24 Score=36.06 Aligned_cols=94 Identities=7% Similarity=0.112 Sum_probs=61.5
Q ss_pred HHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHHH
Q 009017 33 LKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (546)
Q Consensus 33 L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~ 105 (546)
|++.|+..... +......-.+.+.+.. ..||.|++|.+-.. .+--++...++ .+..++=....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAP-NDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45556553322 2233334566677776 56999999998776 66555554443 455555556678899999
Q ss_pred HHHcCCCEEEeCCCC-HHHHHHHHH
Q 009017 106 CIALGAVEFLRKPLS-EDKLRNLWQ 129 (546)
Q Consensus 106 Al~aGAdDYL~KP~~-~eeL~~~I~ 129 (546)
+++.||++++.-=++ .++....++
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHH
Confidence 999999999886555 455554433
No 128
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=73.22 E-value=22 Score=36.86 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=67.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvL 94 (546)
.+++|+.+.+. .+.+...++..+.. +.......+..+++.. .|++|+=.. .+ .-|..+++.+. .+|||+
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~E-g~~~~~lEAma~G~Pvv~- 301 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AE-GISNTILEAMASGLPVIA- 301 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cc-cCchHHHHHHHcCCCEEE-
Confidence 56777776543 35566666665543 3333334455555554 477665322 33 45678888887 899876
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|.... ..+.+..|..+++..+-+.++|.++|..++.
T Consensus 302 s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 302 TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 43333 3345567888999999999999999987764
No 129
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=72.94 E-value=50 Score=32.87 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=50.8
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
++..+.+.. .|++|+-....+ .-|+.+++.+. .+|||+. .... ..+.+..|..+++.++.+.++|.++|.
T Consensus 254 ~~~~~~~~~----ad~~i~ps~~~e-~~~~~~~Ea~a~G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~ 324 (359)
T cd03823 254 EEIDDFYAE----IDVLVVPSIWPE-NFPLVIREALAAGVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALE 324 (359)
T ss_pred HHHHHHHHh----CCEEEEcCcccC-CCChHHHHHHHCCCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 555555554 477776433234 45677888886 7888753 3222 344566778899999999999999998
Q ss_pred HHHH
Q 009017 130 HVVH 133 (546)
Q Consensus 130 ~vlr 133 (546)
.++.
T Consensus 325 ~l~~ 328 (359)
T cd03823 325 RLID 328 (359)
T ss_pred HHHh
Confidence 8775
No 130
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=72.71 E-value=16 Score=37.26 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred CEEEEEeCCHHH----H--HHHHHHHhhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-----HHHHH
Q 009017 18 LRVLLLDQDSSA----A--AELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLE 84 (546)
Q Consensus 18 ~rILIVDDD~~~----~--~~L~~~Le~~Gy~V~~a--ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-----lellr 84 (546)
+|+=|+.|+... . -.-.+.|.+.||.|..+ .|.--|.++..- ..- +|+=+.-|- .+| ...++
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~--Gca--avMPlgsPI-GSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA--GCA--AVMPLGSPI-GSGRGIQNPYNLR 168 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT--T-S--EBEEBSSST-TT---SSTHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC--CCC--EEEeccccc-ccCcCCCCHHHHH
Confidence 456566555432 2 22345667889999843 344344443333 222 344444443 333 24455
Q ss_pred HhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 009017 85 TAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 85 ~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vlr 133 (546)
.|+ ++|||+=.+-.....+..|++.|++..|+- --++-.+..+.+..++
T Consensus 169 ~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 169 IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 554 899999999999999999999999999975 4566666666665554
No 131
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=72.27 E-value=60 Score=34.48 Aligned_cols=107 Identities=7% Similarity=0.128 Sum_probs=65.6
Q ss_pred CEEEEEeCCH--------HHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 18 LRVLLLDQDS--------SAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 18 ~rILIVDDD~--------~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
.+++||.+.. ...+.+.......+-.|.... +.++..+++.. .|++++-....+ .-|+.+++.+.
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E-~f~~~~lEAma 299 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEE-AFCMVAVEAMA 299 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCcc-ccccHHHHHHH
Confidence 5667776532 223344444444444444332 35566666665 578777543334 34667788776
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEF-LRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDY-L~KP~~~eeL~~~I~~vlr 133 (546)
.+|||... ... ..+.+..|..+| +..|.+.++|.++|..++.
T Consensus 300 ~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 89987643 332 234456788888 5678999999999888764
No 132
>PRK14098 glycogen synthase; Provisional
Probab=71.17 E-value=42 Score=37.43 Aligned_cols=111 Identities=7% Similarity=0.009 Sum_probs=66.2
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~-~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
..+++|+.+-+ ...+.++++.++.+-+|. ..-+..++...+.. .|++|+=- ..+ .-|+..++.++ .+|+|
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E-~~Gl~~lEAma~G~ppV 409 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIE-SCGMLQMFAMSYGTIPV 409 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCC-CchHHHHHHHhCCCCeE
Confidence 35677776533 345566666655443333 23344444555554 58877643 234 46788888887 56666
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+...-.-.+.+......+..+|+..+.+.++|..+|.+++.
T Consensus 410 v~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 410 AYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 54332222333222234678999999999999999887664
No 133
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.19 E-value=46 Score=32.77 Aligned_cols=66 Identities=11% Similarity=0.277 Sum_probs=47.4
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+..+.+.+ ...+ +++.|+.-.+...| +++++.++ ++|||+-.+-.+.+.+.++++.||++++.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34455565665 4566 77788865431223 67777775 68998888888999999999999999886
No 134
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=70.04 E-value=20 Score=37.30 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=65.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CCCEE---EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH--hCCC
Q 009017 19 RVLLLDQDSSAAAELKFKLEA----MDYIV---STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET--AKDL 89 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~----~Gy~V---~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~--Lr~i 89 (546)
-|||=|++-...-.+.+.+++ .+|.+ +.+++.+++.+.+.. .+|+|++|-.-|+ .--+.++. ++.-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e--~~~~av~~l~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLGLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH--HHHHHHHHhccCCc
Confidence 478888888777767777664 35532 389999999999987 6899999965444 22344444 3345
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
.++=.|+.-+.+.+......|+|-+-
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~IS 260 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVIS 260 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEEE
Confidence 56667888888888888888876543
No 135
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.81 E-value=33 Score=35.17 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=67.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvL 94 (546)
.+++|+.+... ...+++...+.+. .|.......+..+++.. .|++|+=.. .+ .-|+.+++.+. .+|+|+.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E-~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KE-SFGLAALEAMACGVPVVAS 300 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cC-CCccHHHHHHHcCCCEEEe
Confidence 46666655543 3445555555543 35544444455555544 477776543 34 45778888886 8998864
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
... ...+.+..|..+|+..+-+.++|.++|..++.
T Consensus 301 -~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 301 -NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 322 23456777889999999999999998887664
No 136
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.74 E-value=45 Score=34.86 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=64.4
Q ss_pred EEEEEeCCHHHH--H--HHHHHHh----hCCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 19 RVLLLDQDSSAA--A--ELKFKLE----AMDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 19 rILIVDDD~~~~--~--~L~~~Le----~~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
.|||-|++-.+. . .+...++ ..++ . .+.+.+.+++.+.+.. .+|+|++|-.-|+ +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e--~l~~av~~~~ 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD--DLREGVELVD 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH--HHHHHHHHhC
Confidence 488888886643 1 3445443 3343 3 3589999999999876 5899999965443 3344555566
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
...+|-.|+.-+.+.+.+..+.|+|-..
T Consensus 236 ~~~~leaSGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 236 GRAIVEASGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5557888888899999998899976543
No 137
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=69.47 E-value=57 Score=32.08 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC---CCcEEEEecCCChHH
Q 009017 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLST 102 (546)
Q Consensus 33 L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr---~iPIIvLSs~~d~e~ 102 (546)
+.+.+.+.+..+. .+.+.+++...... ..|.|+++-.-.+. ...++++++++ ++||++.-+-...+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~~---gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~ 170 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAA---GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRG 170 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHHc---CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHH
Confidence 3444455565544 44566665554443 57888876431110 13466787776 789998888777788
Q ss_pred HHHHHHcCCCEEEeC
Q 009017 103 MMKCIALGAVEFLRK 117 (546)
Q Consensus 103 i~~Al~aGAdDYL~K 117 (546)
+.++++.||+.++.-
T Consensus 171 v~~~l~~GadgV~vg 185 (236)
T cd04730 171 IAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHcCCcEEEEc
Confidence 999999999998874
No 138
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=69.20 E-value=5.2 Score=39.13 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=48.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-C--CHHHHHHHhC-CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-D--GSFKFLETAK-DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~--dGlellr~Lr-~iPIIvLS 95 (546)
|||||....+...|.+.|++.|+++.+....+..++.+.. ..||.||+--.-... . .-.++++.+. ++||+-+.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIC 79 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVC 79 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEc
Confidence 8999999999999999999999998876655333444444 468888874321110 0 0123444433 67777654
No 139
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.61 E-value=41 Score=35.08 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=63.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhC----C-CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----C
Q 009017 20 VLLLDQDSSAAAELKFKLEAM----D-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----D 88 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~----G-y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~ 88 (546)
|||-|++-.+. .+...++.. . .. .+.+++.+++.+.+.. .+|+|++|-..|+ +--++++.++ .
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e--~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE--EIREVIEALKREGLRE 230 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH--HHHHHHHHHHhcCcCC
Confidence 88999887665 566665532 1 22 4489999999999986 5799999965444 2233444443 2
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
-..|..|+.-+.+.+.+..+.|+|.+.+
T Consensus 231 ~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3456677788889999999999876654
No 140
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=68.10 E-value=65 Score=31.53 Aligned_cols=107 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
..+++|+.+... ...+...+...+. .|......++..+.+.. .|++|+-... + .-|..+++.+. .+|||+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e-~~~~~~~Ea~a~G~Pvi~ 281 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-E-GFPMVLLEAMAFGLPVIS 281 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-c-ccCHHHHHHHHcCCCEEE
Confidence 356677665433 2334444554443 34444434555556555 5777776554 3 34678888886 899875
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
....... ......|..+++.++.+.++|..+|..++.
T Consensus 282 ~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 282 FDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred ecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 4322222 234456668899999999999999988764
No 141
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.99 E-value=37 Score=37.35 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCEEEEEeC---CHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 17 GLRVLLLDQ---DSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 17 ~~rILIVDD---D~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
..+++|+.+ ++...+.+.+++++.|. .|.... ..+..+++.. .|++++-.. .+ .-|+.+++.+. .+|
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~-~E-g~p~~vlEAma~G~P 396 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSI-SE-GQPLVILEAMAAGIP 396 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCch-hh-cCChHHHHHHHcCCC
Confidence 356777753 34556667777766654 244333 4444555544 578777543 33 45778888886 889
Q ss_pred EEEEecCCChHHHHHHHHc------CCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIAL------GAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~a------GAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||. |..... .+.+.. |..+++..|.+.++|.++|..++.
T Consensus 397 VVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 876 443332 333434 778999999999999999988765
No 142
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.56 E-value=45 Score=33.95 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=61.6
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHHH
Q 009017 33 LKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (546)
Q Consensus 33 L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~ 105 (546)
+++.|+.-. +-+.........++.+.. ..+|.|++|++-.. .+.-++...++ ...+++=....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHH
Confidence 455565432 223233344566777766 57999999998776 66655555443 345555556667788999
Q ss_pred HHHcCCCEEEeCCC-CHHHHHHHHHH
Q 009017 106 CIALGAVEFLRKPL-SEDKLRNLWQH 130 (546)
Q Consensus 106 Al~aGAdDYL~KP~-~~eeL~~~I~~ 130 (546)
+++.||++++.--+ +.+++...++.
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999876544 56666655543
No 143
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=67.49 E-value=38 Score=35.77 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec-CCCC----CCC-HHHHHHHhC---CCcEEEEecCCChHH
Q 009017 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV-TTSN----TDG-SFKFLETAK---DLPTIITSNIHCLST 102 (546)
Q Consensus 33 L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl-~mp~----~~d-Glellr~Lr---~iPIIvLSs~~d~e~ 102 (546)
+.+.|+..|..|. .+.+.++|...++. .+|+||+-= +-.+ ... -+.|+..++ ++|||+--+-.+...
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH
Confidence 4456777888765 89999999987776 589888762 2111 011 355666665 799999888889999
Q ss_pred HHHHHHcCCCEEEeC
Q 009017 103 MMKCIALGAVEFLRK 117 (546)
Q Consensus 103 i~~Al~aGAdDYL~K 117 (546)
+..++.+||++...=
T Consensus 205 iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 205 IAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHCT-SEEEES
T ss_pred HHHHHHcCCCEeecC
Confidence 999999999999764
No 144
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.32 E-value=29 Score=36.39 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=65.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 19 RVLLLDQDSSAAAELKFKLEA----MDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~----~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
.|||-|++-.+...+...+++ .++ . .+.+.+.+|+.+.+.. .+|+|++|-.-|+ +--++++.++.-.+
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe--~l~~av~~~~~~~~ 243 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE--QIEQAITLIAGRSR 243 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhcCceE
Confidence 488888887766555555543 342 2 3488999999999976 5899999965444 33445555555456
Q ss_pred EEEecCCChHHHHHHHHcCCCEEE
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
|-.|+.-+.+.+.+..+.|+|-..
T Consensus 244 leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 244 IECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 777888889999888899987543
No 145
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.80 E-value=29 Score=37.95 Aligned_cols=100 Identities=14% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~ass~~eALe~L~~-~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPII 92 (546)
|++|||+.- -.+...+...|.+.| ++|+.++...+..+.+.. .......+.+|+.- .-.+.+.|+ ++.|.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-----~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-----VDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-----hHHHHHHHhcCCEEEE
Confidence 468999998 566677777777766 899988876665555543 11257888898743 334455565 44444
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~ee 123 (546)
++-..-+...+..|++.|+ +||.--+..+.
T Consensus 75 ~~p~~~~~~i~ka~i~~gv-~yvDts~~~~~ 104 (389)
T COG1748 75 AAPPFVDLTILKACIKTGV-DYVDTSYYEEP 104 (389)
T ss_pred eCCchhhHHHHHHHHHhCC-CEEEcccCCch
Confidence 4555566777778999996 46665554444
No 146
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=66.76 E-value=19 Score=37.54 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=62.1
Q ss_pred EEEEEeCCHHHHH---HHHHHHhh----CC-C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 19 RVLLLDQDSSAAA---ELKFKLEA----MD-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 19 rILIVDDD~~~~~---~L~~~Le~----~G-y-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
.|||-|++-.+.. .+...++. .+ . -.+.+.+.++|.+.+.. .+|+|++|- |+. .+-.+.++.++
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lDn-~~~-e~l~~~v~~l~~~ 232 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLDK-FTP-QQLHHLHERLKFF 232 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEECC-CCH-HHHHHHHHHHhcc
Confidence 3777777665543 34444432 11 2 24578899999999876 589999994 443 34445556664
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.-.+|-.|+--+.+.+.+..+.|+|-+..
T Consensus 233 ~~~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 233 DHIPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 23356678888899999999999876543
No 147
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=66.69 E-value=46 Score=30.32 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECC--HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass--~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPI 91 (546)
.++++|+.+.... ..+....+..+. .+..+.. .++..+++.. .|++|+=... + .-|..+++.+. .+|+
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e-~~~~~~~Ea~~~g~pv 119 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-E-GFGLSLLEAMACGCPV 119 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-B-SS-HHHHHHHHTT-EE
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-c-ccccccccccccccce
Confidence 3567777733332 334555554443 2443433 3466666665 4677765544 4 46778888876 7777
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|+ +.. ....+.+..+..+++..+.+.++|..+|..++...
T Consensus 120 I~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 120 IA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 74 432 23456677888999999999999999999888754
No 148
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=65.52 E-value=91 Score=33.59 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=70.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE--EEEE--CCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHhC-
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI--VSTF--YNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK- 87 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~--V~~a--ss~~eALe~L~~~~~~pDLVIlDl~mp-----~~~dGlellr~Lr- 87 (546)
.++.||.+.+. .+.++..+++.|.. |... -+.++..+.+.. .|+.++=.... + .-+..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~E-g~p~~llEAma~ 327 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDME-GIPVALMEAMAV 327 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCcc-CccHHHHHHHhC
Confidence 56777777653 45677777766542 4332 245666777766 57777643221 1 22466788876
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|||.. .... +.+.+..|..+|+..|-+.++|.++|..++.
T Consensus 328 G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 328 GIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8998754 3222 3456778899999999999999999988775
No 149
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.16 E-value=66 Score=33.69 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCCCEEEEEeC--CH---HHHHHHHHHHhhCCCEEEEECCHHHHHH-----Hh--hcCCCCeeEEEEecCCCCCCCH--H
Q 009017 15 PKGLRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALS-----AF--SDKPENFHVAIVEVTTSNTDGS--F 80 (546)
Q Consensus 15 ~~~~rILIVDD--D~---~~~~~L~~~Le~~Gy~V~~ass~~eALe-----~L--~~~~~~pDLVIlDl~mp~~~dG--l 80 (546)
+.+.+|.||-. .+ ...+.+...|++.|+++.......+.+. .. ......+|+||+= + .|| +
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~----G-GDGt~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVV----G-GDGSLL 76 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEE----e-CcHHHH
Confidence 33456888732 22 3455677778888999876554332211 00 0000247877762 3 577 3
Q ss_pred HHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 81 KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 81 ellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
..++.+. ++||+-+.. |=.+||. .++.+++...|..+++.
T Consensus 77 ~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 77 GAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred HHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 4455543 788886643 5567774 68889999988887754
No 150
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.04 E-value=50 Score=36.95 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEC------CHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC----CCcEEE
Q 009017 26 DSSAAAELKFKLEAMD-YIVSTFY------NENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK----DLPTII 93 (546)
Q Consensus 26 D~~~~~~L~~~Le~~G-y~V~~as------s~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr----~iPIIv 93 (546)
.|.-...|...|+..| ++|..++ +.++..+.+.. ..||+|.+....+. . ...++++.+| +++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~-~~~a~~~~~~~k~~~P~~~iV- 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPA-IYIACETLKFARERLPNAIIV- 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCccc-HHHHHHHHHHHHHHCCCCEEE-
Confidence 4666778899999999 5776543 33455566776 68999999765544 2 2345666555 44444
Q ss_pred EecCCChHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIA-LGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 94 LSs~~d~e~i~~Al~-aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
+.+..-.....++++ ....||+..--....+.+.++.+
T Consensus 97 ~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 444332323344554 34568888876666666655543
No 151
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.89 E-value=24 Score=37.00 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=59.6
Q ss_pred EEEEeCCHHHHHHHHHHHhh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCc
Q 009017 20 VLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~----~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iP 90 (546)
|||-|.+-.+...+...+++ .. ...+.+++.+|+.+.+.. ..|+|.+|-.-|+ +--+.++.++ .-.
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LDnm~~e--~vk~av~~~~~~~~~v 247 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLDNFPVW--QTQEAVQRRDARAPTV 247 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeCCCCHH--HHHHHHHHHhccCCCE
Confidence 67777665444334444432 22 235588999999999876 5899999943332 2233444433 333
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.|..|+.-+.+.+.+..+.|+|.+.+
T Consensus 248 ~ieaSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 66778888899999999999876643
No 152
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=64.56 E-value=41 Score=38.61 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=29.9
Q ss_pred CCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 62 ENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 62 ~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+.|++|+-..-+. +...++..+| +++||+-+. +.+......++||+..+.-
T Consensus 463 ~~A~~vv~~~~d~~--~n~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 463 EKAEAIVITCNEPE--DTMKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred ccCCEEEEEeCCHH--HHHHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 34566665543322 2233444443 566665554 5667777888999877753
No 153
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=64.44 E-value=1.1e+02 Score=31.04 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 17 GLRVLLLDQDS---SAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~---~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
..+++|+.+.. ...+.+...+++.+. .|......++..+.+.. .|++|+=..-.+ .-|..+++.+. .+|
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e-~~~~~l~EA~a~G~P 290 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPE-AFGRTAVEAQAMGRP 290 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCC-CCchHHHHHHhcCCC
Confidence 35677776543 233344445555443 35544444555555555 477666432344 45778888887 899
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
||+. .... ..+.+..|..+++..+-+.++|..+|..++
T Consensus 291 vI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 291 VIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred EEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 8754 3322 244566677899999999999999886444
No 154
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=64.10 E-value=28 Score=34.88 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 50 ENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 50 ~~eALe~L~~~~~~p-DLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..+.++.+.. . + .++++|+...+++.| +++++.+. .+||++-.+-.+.+.+.++++.||+..+.
T Consensus 148 ~~~~~~~~~~--~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAK--W-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHH--h-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5667777776 5 4 599999987553333 56677665 68999888889999999999999999886
No 155
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=63.97 E-value=28 Score=36.62 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=63.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~----~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
.|||-|.+-.+...+...+++ .. ...+.+.+.+|+.+.+.. .+|+|++|-.-++ +--++++.++.-.+|
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~e--~~~~av~~~~~~~~i 255 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTTE--QMREAVKRTNGRALL 255 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCChH--HHHHHHHhhcCCeEE
Confidence 367777765555445554432 22 235589999999999987 5799999965443 334455555544466
Q ss_pred EEecCCChHHHHHHHHcCCCEEEe
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..|+.-+.+.+.+..+.|+|.+.+
T Consensus 256 eaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 256 EVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEe
Confidence 678888889999999999876543
No 156
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=63.94 E-value=7.9 Score=37.37 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CC--HHHHHHHhC-CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DG--SFKFLETAK-DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~d--Glellr~Lr-~iPIIvLS 95 (546)
|||||....+...|..+|++.|++|..+.+..--++.+.. ..||.||+.=.-.+. .+ -..+++.+. ++||+-+.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC 79 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVC 79 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEEC
Confidence 8999999999999999999999998877654322344444 457877774221110 11 234454443 67877664
No 157
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=63.80 E-value=22 Score=37.53 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=48.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC--CCE---EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH
Q 009017 19 RVLLLDQDSSAAAELKFKLEAM--DYI---VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~--Gy~---V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr 84 (546)
.|+++|-|..+.+.=+.+|... ||+ |. ...+|...++.+.+ +.+|+||+|..-|. +.+..+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpv-gpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPV-GPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCcc-chHHHHHH
Confidence 4788888888888878887753 554 33 55688888888877 78999999999888 77765543
No 158
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=63.79 E-value=86 Score=32.97 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=69.2
Q ss_pred CEEEEEeC---CH-HHHHHHHHHHhhCCCE--EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-C
Q 009017 18 LRVLLLDQ---DS-SAAAELKFKLEAMDYI--VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D 88 (546)
Q Consensus 18 ~rILIVDD---D~-~~~~~L~~~Le~~Gy~--V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~ 88 (546)
.+++|+.+ +. ...+.+..+.+..+.. |.... +.++..+++.. .|+.++-.. .+ .-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E-~~g~~~lEAma~G 326 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NE-SFGLVAMEAQACG 326 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CC-CcChHHHHHHHcC
Confidence 56677763 11 3445566666665542 44322 44666666665 577776533 34 45778888887 8
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|||+.... . ..+.+..|..+++..+-+.++|.++|..++.
T Consensus 327 ~Pvi~~~~~-~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 327 TPVVAARVG-G---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCEEEecCC-C---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 999865432 2 2335567888999999999999999888765
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=63.72 E-value=32 Score=34.04 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCC--CCeeEEEEecC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~~--~~pDLVIlDl~ 72 (546)
+..-+|.-||-++...+..++.++..|+. |. ...++.+.+..+.... ..||+|++|..
T Consensus 68 ~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 68 PEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 33468999999999999999999998863 54 6678888888775421 36999999985
No 160
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=63.67 E-value=1.4e+02 Score=29.10 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=51.5
Q ss_pred HhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-CCCCCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHHc
Q 009017 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-SNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIAL 109 (546)
Q Consensus 37 Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~m-p~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~a 109 (546)
....|..+. .+.+.+++.+.... .+|++.+.-.- .....+++++++++ ++|+|...+-.+.+.+.+++++
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 345677754 66777776666554 57777665111 00012345565553 4688888888888999999999
Q ss_pred CCCEEEeC
Q 009017 110 GAVEFLRK 117 (546)
Q Consensus 110 GAdDYL~K 117 (546)
||++++.-
T Consensus 194 Ga~gvivG 201 (217)
T cd00331 194 GADAVLIG 201 (217)
T ss_pred CCCEEEEC
Confidence 99999753
No 161
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.15 E-value=67 Score=36.32 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
+.+||+-+. +.+......++||+..+
T Consensus 508 ~~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 508 DIEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred CCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 455655543 33444445567776554
No 162
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=62.97 E-value=1.2e+02 Score=31.22 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC--CEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~G--y~V~-~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
+++||.||.-...........+...+ +.++ .++ +.+.+.+.... ..+.-+. .+--++++.-. ++.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~~~iD~V 71 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE--FGIAKAY--------TDLEELLADPDIDAV 71 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH--cCCCccc--------CCHHHHhcCCCCCEE
Confidence 56899999977666665666666554 4655 333 44444444444 2222111 12223333222 344
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
+|......-.+.+.+|+++|..=|+-||+. .+|..+.++
T Consensus 72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~ 112 (342)
T COG0673 72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVE 112 (342)
T ss_pred EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHH
Confidence 444444556788999999999999999975 566664444
No 163
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=62.78 E-value=94 Score=30.41 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=62.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
++++|+.+.. ....+...++..+. .|. -.-+.++..+.+.. .|++|+-... + .-|..+++.+. .+|||
T Consensus 231 ~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~-~~~~~~~Ea~~~g~pvI 303 (374)
T cd03801 231 VRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-E-GFGLVLLEAMAAGLPVV 303 (374)
T ss_pred eEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-c-cccchHHHHHHcCCcEE
Confidence 5566665433 33444444433221 232 23334666666655 4777664433 3 44667777776 78877
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+... .. ..+.+..+-.+++..+.+.++|.+.|..++.
T Consensus 304 ~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 304 ASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred EeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 5443 22 2334555778899999999999999888764
No 164
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=62.43 E-value=33 Score=33.80 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcC-CCEEEe
Q 009017 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALG-AVEFLR 116 (546)
Q Consensus 50 ~~eALe~L~~~~~~pD-LVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aG-AdDYL~ 116 (546)
..+..+.+.. ..++ +++.|..-.+...| ++++++++ .+|||.-.+-.+.+.+.++++.| |++++.
T Consensus 148 ~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3566666665 4466 78888765442334 67777776 68999888888999999999988 998875
No 165
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.28 E-value=29 Score=36.03 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=60.1
Q ss_pred EEEEeCCHHHHHHHHHHHh----hCCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC---C
Q 009017 20 VLLLDQDSSAAAELKFKLE----AMDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD---L 89 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le----~~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~---i 89 (546)
|||-|.+-.+...+...++ ..++ . .+.+++.+||++.+.. .+|+|.+|-.-+. +--++++.++. -
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~~~e--~l~~~v~~~~~~~~~ 229 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNMSVE--EIKEVVAYRNANYPH 229 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCC
Confidence 6666666555555555554 2343 2 3489999999999976 5899999853222 12223333331 2
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..|..++.-+.+.+.+..+.|+|.+.+
T Consensus 230 ~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 230 VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 356677777999999999999987754
No 166
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=61.99 E-value=51 Score=31.45 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=52.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC--CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~~as-------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+|.++...+...+.+.+.|++. |.+++.+. ...+.++.+.. ..+|+|++-+.+|. .. .++.+++
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~Pk-QE--~~~~~~~ 120 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPK-QE--LWIARHK 120 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH-HH--HHHHHHH
Confidence 578999999999999998888875 56655421 23345777877 78999999999987 33 3444444
Q ss_pred ---CCcEEEEec
Q 009017 88 ---DLPTIITSN 96 (546)
Q Consensus 88 ---~iPIIvLSs 96 (546)
..+|++-.+
T Consensus 121 ~~l~~~v~~~vG 132 (171)
T cd06533 121 DRLPVPVAIGVG 132 (171)
T ss_pred HHCCCCEEEEec
Confidence 455555443
No 167
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.89 E-value=40 Score=35.50 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=63.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhh---C-C-CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEA---M-D-YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~---~-G-y~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
.|||-|++-.+...+...++. . . ..| +.+++.+++.+.+.. .+|+|++|-.-|+ +--+.++.++.-.+|
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe--~l~~av~~~~~~~~l 252 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD--MMREAVRVTAGRAVL 252 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCCeEE
Confidence 488888887666545554432 2 1 223 488999999999976 5899999965444 333455555544567
Q ss_pred EEecCCChHHHHHHHHcCCCEEE
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL 115 (546)
-.|+.-+.+.+.+..+.|+|-..
T Consensus 253 EaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 253 EVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred EEECCCCHHHHHHHHhcCCCEEE
Confidence 77888889999888899986543
No 168
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.74 E-value=1e+02 Score=32.58 Aligned_cols=103 Identities=24% Similarity=0.333 Sum_probs=62.0
Q ss_pred CCCCCEEEEEeC--CH---HHHHHHHHHHhhCCCEEEEECCHHHHHHH----h------------hcCCCCeeEEEEecC
Q 009017 14 FPKGLRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALSA----F------------SDKPENFHVAIVEVT 72 (546)
Q Consensus 14 m~~~~rILIVDD--D~---~~~~~L~~~Le~~Gy~V~~ass~~eALe~----L------------~~~~~~pDLVIlDl~ 72 (546)
|.++.+|+||-. .+ .....|...|.+.|++|.........+.. + ......+|+||+
T Consensus 2 ~~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~--- 78 (306)
T PRK03372 2 MTASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV--- 78 (306)
T ss_pred CCCccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---
Confidence 344456888833 22 34566777788889988866543332210 0 010023677776
Q ss_pred CCCCCCH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 73 TSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 73 mp~~~dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+ + .|| +..++.+. .+||+-+- .|=.+||.- ++.+++...|+++++..
T Consensus 79 l-G-GDGT~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 79 L-G-GDGTILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred E-c-CCHHHHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 2 4 577 44555543 68888654 266788885 77889988888877654
No 169
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=61.65 E-value=1.2e+02 Score=29.06 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=54.8
Q ss_pred HHHHHHHHhhCCCEEE----EECCHHHHHHHhhcCCCCeeEEEEecCC-C----CCCCHHHHHHHhC---CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVS----TFYNENEALSAFSDKPENFHVAIVEVTT-S----NTDGSFKFLETAK---DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~----~ass~~eALe~L~~~~~~pDLVIlDl~m-p----~~~dGlellr~Lr---~iPIIvLSs~ 97 (546)
...+.+.+++.|..+. .+.+..+++..+. ...|.|.+...- + . ..+.+.++.++ ++||++.-+-
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~i~~~GGI 167 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGG-WWPEDDLKKVKKLLGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCC-CCCHHHHHHHHhhcCCCEEEECCc
Confidence 4455566666676643 5557888887444 357888875321 1 1 34567777776 5777766554
Q ss_pred CChHHHHHHHHcCCCEEEeC
Q 009017 98 HCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~K 117 (546)
+.+.+.++++.||+.++.-
T Consensus 168 -~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 168 -TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred -CHHHHHHHHhcCCCEEEEe
Confidence 5888999999999988654
No 170
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=61.59 E-value=54 Score=34.34 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=56.3
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecC---------------------------------C--CCCCCHHHHHHHhC---
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVT---------------------------------T--SNTDGSFKFLETAK--- 87 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~---------------------------------m--p~~~dGlellr~Lr--- 87 (546)
-+++.+||+...+. .+|+|=.=+. . .. ..++++++.+.
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~-~~d~elLk~l~~~~ 193 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI-QAPYELVKETAKLG 193 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc-CCCHHHHHHHHHhc
Confidence 57788888888876 4777665440 0 11 23678888776
Q ss_pred CCcEE--EEecCCChHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 009017 88 DLPTI--ITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 ~iPII--vLSs~~d~e~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vl 132 (546)
.+||| ...+-.+.+.+..+++.||+.++.= .-++.+....+...+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai 245 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAV 245 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 68997 6666668999999999999999754 224444444444443
No 171
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=61.57 E-value=29 Score=33.61 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE---EEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~---V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
.+|..||-++.....+++-++..+.. .+...+...++..+......||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 47999999999999999999987633 3466777777776632126899999994
No 172
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=61.08 E-value=57 Score=31.19 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=47.3
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-------~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
.+.+.+++.+... ...|+|.++-..+.. ..|++.++.+. ++||+++.+- +.+.+.++++.|++++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 6778888776444 368999886654420 23677777664 5888877665 5788889999999887
Q ss_pred Ee
Q 009017 115 LR 116 (546)
Q Consensus 115 L~ 116 (546)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 64
No 173
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.07 E-value=65 Score=30.11 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=47.6
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCC-------CCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~-------~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
.+.+..++.+.... .+|.|+++...|. ...+++.++.++ ++||++..+- +.+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 45667777666554 5899988754332 024567777765 6888888765 46788899999999886
Q ss_pred eC
Q 009017 116 RK 117 (546)
Q Consensus 116 ~K 117 (546)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 174
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=60.93 E-value=23 Score=34.05 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=60.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CC--C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---C
Q 009017 19 RVLLLDQDSSAAAELKFKLEA----MD--Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~----~G--y-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~ 88 (546)
.|||-|.+-.+...+.+.++. .+ . -.+.+.+.+++.+.+.. .+|+|.+|-.-|+ +--++++.++ .
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~--~~~~~v~~l~~~~~ 126 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE--DLKEAVEELRELNP 126 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH--HHHHHHHHHHHHTT
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH--HHHHHHHHHhhcCC
Confidence 367777666655545555442 22 2 23489999999999887 5899999965443 2233444333 3
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
-..|.+|+.-+.+.+.+..+.|+|.+.+
T Consensus 127 ~v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 127 RVKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp TSEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred cEEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 4677788888888999999999876643
No 175
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=60.72 E-value=58 Score=29.01 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHH
Q 009017 29 AAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLST 102 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~a--ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~ 102 (546)
-...+..+|++.|+.+... ...++.++.+... ..||+|.+.+.........++++.+| +++||+ -+..-...
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~-GG~~~t~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVV-GGPHATFF 81 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEE-CCcchhhC
Confidence 4456788898889886643 3455666666531 36999999985544112345666666 344443 33222222
Q ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 103 MMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 103 i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
....+.....||+..--....+.+.++.
T Consensus 82 p~~~~~~~~~D~vv~GEgE~~~~~l~~~ 109 (127)
T cd02068 82 PEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred HHHHhcCCCCCEEEECCcHHHHHHHHHH
Confidence 2222444455788775444445544443
No 176
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=60.62 E-value=59 Score=33.36 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=66.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs 96 (546)
.+++|+.+.+.. +.+...+ .....+.-.-+.++..+++.. .|++|+-.. + .-|+.+++.+. .+|||....
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e-~~g~~~~Eama~G~Pvi~~~~ 292 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--E-DFGIVPVEAMASGTPVIAYGK 292 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--C-CCCchHHHHHHcCCCEEEeCC
Confidence 567888776643 3333321 122333334466677777766 577776544 4 45777888876 899987543
Q ss_pred CCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 97 IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 97 ~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.. ..+.+..|..+++..|-+.++|.++|..++.
T Consensus 293 ~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 293 GG----ALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred CC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22 2234556778999999999999998887764
No 177
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=60.56 E-value=44 Score=34.18 Aligned_cols=96 Identities=15% Similarity=0.265 Sum_probs=60.0
Q ss_pred CEEEEEeCCHHH------HHHHHHHHhhCCCEEEEECCHHHH-HHHhhcCCCCeeEEEEecCCCCCCCHH-----HHHHH
Q 009017 18 LRVLLLDQDSSA------AAELKFKLEAMDYIVSTFYNENEA-LSAFSDKPENFHVAIVEVTTSNTDGSF-----KFLET 85 (546)
Q Consensus 18 ~rILIVDDD~~~------~~~L~~~Le~~Gy~V~~ass~~eA-Le~L~~~~~~pDLVIlDl~mp~~~dGl-----ellr~ 85 (546)
+|+=|+-|+... .-.-.+.|-+.||.|..+.+.+-. -+.|++- . -..|+-+.-|- .+|+ ..++.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~-G--caavMPl~aPI-GSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEA-G--CAAVMPLGAPI-GSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhc-C--ceEeccccccc-cCCcCcCCHHHHHH
Confidence 456566554322 223356677889999855443332 2333331 1 23455554443 3332 34444
Q ss_pred hC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 86 AK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 86 Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
|+ ++|||+=.+-.....+..+++.|+|..|.-
T Consensus 177 iie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 177 IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 43 899999999999999999999999999875
No 178
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=60.36 E-value=1.2e+02 Score=30.89 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHhC-CCcEEEEecC----CChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009017 79 SFKFLETAK-DLPTIITSNI----HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVH 133 (546)
Q Consensus 79 Glellr~Lr-~iPIIvLSs~----~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~vlr 133 (546)
+..+++.+. .+|+|++... .......+.+..+..+++..+- +.++|.++|..++.
T Consensus 262 ~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 262 ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 455667665 8999876422 1112222333334467887764 89999998887764
No 179
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.30 E-value=61 Score=33.63 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=56.6
Q ss_pred CEEEEEeC-----CHHHHHHHHHHHhhCCCEEEEECCHHHHHH--------HhhcCCCCeeEEEEecCCCCCCCH--HHH
Q 009017 18 LRVLLLDQ-----DSSAAAELKFKLEAMDYIVSTFYNENEALS--------AFSDKPENFHVAIVEVTTSNTDGS--FKF 82 (546)
Q Consensus 18 ~rILIVDD-----D~~~~~~L~~~Le~~Gy~V~~ass~~eALe--------~L~~~~~~pDLVIlDl~mp~~~dG--lel 82 (546)
|||.||-. .......+..+|++.|+++.......+.+. .+.. ..+|+||+= + .|| +++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~i----G-GDGTlL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIAI----G-GDGTILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEEE----e-CcHHHHHH
Confidence 46777622 223456677778888998876543222111 1111 247777762 4 577 345
Q ss_pred HHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 83 LETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 83 lr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++ +. ++||+.+.. |=.+||. .++.+++...+.++++.
T Consensus 74 ~~-~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 74 EH-KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred HH-hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 55 43 688887764 3346665 57788888888777654
No 180
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=60.23 E-value=76 Score=30.25 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~~ass-------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+|.++...+...+.+...|++. |..++-+.+ .++.++.+.. ..+|+|++.+.+|. . -.++...+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~Pk-Q--E~~~~~~~ 122 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPK-Q--ERWIARHR 122 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH-H--HHHHHHHH
Confidence 468999999999999999999875 666664332 4556677777 78999999999887 3 34555554
Q ss_pred ---CCcEEEEe
Q 009017 88 ---DLPTIITS 95 (546)
Q Consensus 88 ---~iPIIvLS 95 (546)
..++++-.
T Consensus 123 ~~l~~~v~i~v 133 (172)
T PF03808_consen 123 QRLPAGVIIGV 133 (172)
T ss_pred HHCCCCEEEEE
Confidence 34444433
No 181
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=60.12 E-value=55 Score=34.29 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=39.4
Q ss_pred CHHHHHHHhC---CCcEE--EEecCCChHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 009017 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVV 132 (546)
Q Consensus 78 dGlellr~Lr---~iPII--vLSs~~d~e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vl 132 (546)
.+++++++++ .+||| ...+-.+.+.+..++++||+.+++ |.-++.+....+...+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai 248 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEAT 248 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 3677887775 69998 666666899999999999999965 3335555555444444
No 182
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.12 E-value=30 Score=36.12 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=61.5
Q ss_pred EEEEeCCHHHHHHHHHHHh----hCCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 20 VLLLDQDSSAAAELKFKLE----AMDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le----~~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
|||-|.+-.+...+...++ ..++ . .+.+.+.+|+.+.+.. .+|+|++|-.-++ +--+.++.++...+|
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~e--~l~~av~~~~~~~~l 241 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTPD--TLREAVAIVAGRAIT 241 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCHH--HHHHHHHHhCCCceE
Confidence 6666666555444444443 2332 2 3589999999999976 5899999964333 233445555544457
Q ss_pred EEecCCChHHHHHHHHcCCCEEE
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL 115 (546)
..|+.-+.+.+.+..+.|+|-+.
T Consensus 242 eaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 242 EASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred EEECCCCHHHHHHHHhcCCCEEE
Confidence 78888899999999999987554
No 183
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=59.63 E-value=61 Score=37.59 Aligned_cols=109 Identities=9% Similarity=-0.083 Sum_probs=72.7
Q ss_pred CEEEEEe-----CCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC-
Q 009017 18 LRVLLLD-----QDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK- 87 (546)
Q Consensus 18 ~rILIVD-----DD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr- 87 (546)
.+|+++- .+.........+|..-||++. .+.+.+++.+.+.. ...+|+++...-... ..+-++++.||
T Consensus 495 P~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~~ 572 (619)
T TIGR00642 495 PKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALKA 572 (619)
T ss_pred CeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHHh
Confidence 4676664 233334556667777789977 45678888888877 567777765543220 23456778885
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
....|+|.+.... ..+...+|+|+||.--.+.-+++..++.
T Consensus 573 ag~~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 573 AGAKALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred CCCCEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 4557888887653 3347789999999999887766665543
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=59.59 E-value=88 Score=33.46 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 17 GLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 17 ~~rILIVDDD~---~~~~~L~~~Le~~Gy~V~~ass-------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
+.+|++++.|. ...+.+....+..|..+..... ..++++.+.. ..+|+||+|..=-. ..-..++..|
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~-~~~~~lm~eL 244 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRM-HTDANLMDEL 244 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCcc-CCcHHHHHHH
Confidence 46788888773 3344556666666766653322 1245555555 56899999975111 1123344443
Q ss_pred C--------CCcEEEEecCCChHHHH--HHH--HcCCCEEEeCCCCH
Q 009017 87 K--------DLPTIITSNIHCLSTMM--KCI--ALGAVEFLRKPLSE 121 (546)
Q Consensus 87 r--------~iPIIvLSs~~d~e~i~--~Al--~aGAdDYL~KP~~~ 121 (546)
+ +..++++.+....+... +.+ ..|++.+|.--++.
T Consensus 245 ~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 245 KKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred HHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 2 34455555543333332 222 25778776654543
No 185
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=59.30 E-value=1.4e+02 Score=30.89 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecC----CChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI----HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~----~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~vlr 133 (546)
.|++|+. ..+..+++.+. .+|+|++... .+.....+.+..+-.+++..+-+ .++|.++|..++.
T Consensus 253 ~d~~i~~------~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 253 ADLVICR------AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred CCEEEEC------CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHc
Confidence 4666652 12355666665 8999887531 22222233343333577776655 8999999888775
No 186
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=58.94 E-value=37 Score=29.62 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=39.4
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 24 DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 24 DDD~~~~~~L~~~Le~~Gy~V~~as---s~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
|.+..-...+..+|++.||++.... ..++.++.+.. ..||+|.+...+..
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~ 62 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTT 62 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHh
Confidence 5666677788899999999988543 66777787877 78999999887654
No 187
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=58.86 E-value=96 Score=30.45 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=45.9
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCC--HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~~d--Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+.++.+.+ ...+ +++.|+...+... .++++++++ .+|||+-.+-.+.+.+.++++.||++++.
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 34455666655 3344 5667765433112 267777775 79999988888889999999999999876
No 188
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=58.78 E-value=1.8e+02 Score=29.15 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEE--ECCHHHHHHHhhcCCCCeeEEEEecCC-CCCCCHHHHHHHhC-CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVST--FYNENEALSAFSDKPENFHVAIVEVTT-SNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~--ass~~eALe~L~~~~~~pDLVIlDl~m-p~~~dGlellr~Lr-~iP 90 (546)
..+++|+.+.+. ...+.+.+++.+. .|.. .-+.++..+.+.. .|++++-... .+ .-|+.+++.+. .+|
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e-~~g~~~~Ea~~~g~P 291 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSE-AFGIVLLEAMAFGKP 291 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCccccc-ccchHHHHHHHcCCC
Confidence 366777776543 3455555544432 2443 2244555566654 4666653221 23 45778888886 888
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
||+.-.....+.+.. .|..+|+..+-+.+++.++|..++..
T Consensus 292 vi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 292 VISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred EEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 886432222222222 47889999999999999999888753
No 189
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=58.59 E-value=76 Score=33.56 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~ 127 (546)
+.++..+++.. .|+.++ ...++ .-|+.+++.+. .+|||. |... ...+.+..|..+++..+.+.++|.++
T Consensus 290 ~~~~~~~~l~~----adv~v~-~s~~e-~~~~~llEAmA~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 290 PYDQYLALLQV----SDVHVY-LTYPF-VLSWSLLEAMACGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred CHHHHHHHHHh----CcEEEE-cCccc-ccchHHHHHHHCCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHH
Confidence 34566666665 466554 33455 55678888886 889885 3322 23455667889999999999999999
Q ss_pred HHHHHHH
Q 009017 128 WQHVVHK 134 (546)
Q Consensus 128 I~~vlrr 134 (546)
|..++..
T Consensus 360 i~~ll~~ 366 (396)
T cd03818 360 VIELLDD 366 (396)
T ss_pred HHHHHhC
Confidence 9887753
No 190
>PRK10742 putative methyltransferase; Provisional
Probab=58.54 E-value=47 Score=34.16 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHH
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM------DY----IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLE 84 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~------Gy----~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr 84 (546)
+-+|..||.++.+...|++-|++. +- ++. ...+..+.+..+. ..||+|.+|-..|. .. .-...+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~---~~fDVVYlDPMfp~-~~ksa~vkk 185 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT---PRPQVVYLDPMFPH-KQKSALVKK 185 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC---CCCcEEEECCCCCC-Cccccchhh
Confidence 457999999999999999999874 21 232 4556666666533 36999999998886 22 111222
Q ss_pred HhCCCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 85 TAKDLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 85 ~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++-+.-++-......+.+..|++..-.-.++|
T Consensus 186 ~mr~~~~l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 186 EMRVFQSLVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred hHHHHHHhcCCCCChHHHHHHHHHhcCceEEEe
Confidence 222111112233334455555665555555555
No 191
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=58.25 E-value=97 Score=30.29 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=57.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH-hC-CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-AK-DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~-Lr-~iPIIv 93 (546)
-+++|+.+++..++.++++++..| |.|....+.+++++.++.....+.|+..+....+ .++-++. +. +-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~---~~~~ir~~~~~~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD---VEPEIREAHRKGEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc---hHHHHHHhhccCCcEEE
Confidence 368999999999999999999875 7899999999999998642245788888887644 5555543 32 456666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
+-+
T Consensus 109 vvG 111 (176)
T PRK03958 109 VVG 111 (176)
T ss_pred EEc
Confidence 655
No 192
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=58.09 E-value=50 Score=32.93 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 48 YNENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 48 ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+..+..+.+.. ....+|++|+.-.+++.| +++++++. .+|+|+--+-.+.+.+.++.+.||+..+.
T Consensus 141 ~~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 141 ESLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred ccHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 355556666655 334799999987653344 67888876 68998888888999999999999999876
No 193
>PLN02775 Probable dihydrodipicolinate reductase
Probab=58.00 E-value=2.1e+02 Score=30.04 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=61.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE------------------------CCHHHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTF------------------------YNENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a------------------------ss~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
.++|+|..--......+.+.+...+++++-+ .+.++++..+.. ..+|+|++|..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDFT 88 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDYT 88 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEECC
Confidence 4788888888877777777665566665421 445555555544 46899999999
Q ss_pred CCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHc-CCCEEEeCCCCHH
Q 009017 73 TSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAL-GAVEFLRKPLSED 122 (546)
Q Consensus 73 mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~a-GAdDYL~KP~~~e 122 (546)
.|+ ...+.++... .+|+|+=|.--+.+...+..+. ++--++.-.++..
T Consensus 89 ~P~--a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 89 LPD--AVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred ChH--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHH
Confidence 987 2344444432 6777765554444444443333 4444454455543
No 194
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=57.78 E-value=13 Score=35.83 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=27.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
++|||||....+-..+.+.|++.|+++.++.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999999998889999999998877655
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.73 E-value=80 Score=35.00 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=56.6
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCC--CCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEALSAFSDKP--ENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 17 ~~rILIVDDD~~---~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~--~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
+.+|++++-|.. ..+.++.+-+..|+.+..+.+..+..+.+..-. ..+|+||+|.-=-. ....+.++.+.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs-~kd~~lm~EL~~~lk 347 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN-YRASETVEEMIETMG 347 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc-CcCHHHHHHHHHHHh
Confidence 468999988864 334555555567888877777666555543210 25899999964211 11123333332
Q ss_pred ----CCcEEEEecCCChHH---HHHHH-HcCCCEEEeCCCCH
Q 009017 88 ----DLPTIITSNIHCLST---MMKCI-ALGAVEFLRKPLSE 121 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~---i~~Al-~aGAdDYL~KP~~~ 121 (546)
+-.++++++...... +.+.+ ..|.+.+|.--+|.
T Consensus 348 ~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 348 QVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred hcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 223455655333322 33333 45777776654553
No 196
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=57.26 E-value=1.7e+02 Score=30.40 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=66.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE---CCHHHHHHH-hhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF---YNENEALSA-FSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~a---ss~~eALe~-L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i 89 (546)
.++++||.+.+. .+.+.+..++.+. .|... .+..+.+.. +.. .|++++-.. .+ .-|+.+++.+. .+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~----~d~~v~~s~-~E-gf~~~~lEAma~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN----VSALLLTSK-FE-GFPMTLLEAMSYGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc----CcEEEECCc-cc-CcChHHHHHHHcCC
Confidence 356777766543 4455565555443 24433 233333332 332 466665332 23 34778888887 89
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|||..-.... ..+.+..|..+++..|-+.++|.++|..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 9875321233 334567788999999999999999998876543
No 197
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=56.97 E-value=17 Score=37.29 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=39.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-------s~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
|||||+..+..+...|...|...|++|.... +.+++.+.+.. ..||+||--..+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccceee
Confidence 6899999999999999999999999888663 55666667776 6799988766443
No 198
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=56.93 E-value=46 Score=35.23 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHHHH-------hhCCC--E-EEEECCHHHHHHHhh------cCCCCeeEEEEecC--CCCC-C-C
Q 009017 19 RVLLLDQDSSAAAELKFKL-------EAMDY--I-VSTFYNENEALSAFS------DKPENFHVAIVEVT--TSNT-D-G 78 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~L-------e~~Gy--~-V~~ass~~eALe~L~------~~~~~pDLVIlDl~--mp~~-~-d 78 (546)
.|||-|.+-.+...+...+ +..++ . .+.+.+.+|+.+.+. . ..|+|++|-. -|+. . +
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a---gaDiImLDnm~~~~~~~~~~ 248 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT---SLTRVMLDNMVVPLENGDVD 248 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC---CCCEEEeCCCcccccccCCC
Confidence 3777777765553333333 23333 2 348999999999998 5 5799999965 1110 0 1
Q ss_pred ---HHHHHHHhCCCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 79 ---SFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 79 ---Glellr~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
--+.++.++....|-.|+.-+.+.+.+..+.|+|-..
T Consensus 249 ~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 249 VSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred HHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 1223344444445778888889999988899976543
No 199
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=56.92 E-value=13 Score=35.88 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CC--HHHHHHHhC-CCcEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG--SFKFLETAK-DLPTIIT 94 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~--~d--Glellr~Lr-~iPIIvL 94 (546)
|||||....+...+.++|++.|+.+....+....++.+.. ..||.||+- -=|+. .+ ..++++.+. .+||+-+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils-gGpg~p~~~~~~~~~i~~~~~~~PvLGI 78 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVIS-PGPCTPNEAGISLEAIRHFAGKLPILGV 78 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEc-CCCCChhhcchhHHHHHHhccCCCEEEE
Confidence 8999999999999999999999997765533222333444 458877762 11110 11 134454443 5777766
Q ss_pred e
Q 009017 95 S 95 (546)
Q Consensus 95 S 95 (546)
.
T Consensus 79 C 79 (188)
T TIGR00566 79 C 79 (188)
T ss_pred C
Confidence 4
No 200
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=56.70 E-value=12 Score=36.24 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=47.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CC--HHHHHHHhC-CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DG--SFKFLETAK-DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~d--Glellr~Lr-~iPIIvLS 95 (546)
|||||....+...|.++|++.|+++.++.+.+..++.+.. ..||.||+--.-... .+ -.++++.+. .+||+-+.
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIC 79 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVC 79 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEEC
Confidence 8999999999999999999999888766654322344444 458888875321110 11 234455443 67877664
No 201
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.28 E-value=56 Score=32.91 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.++.+... .--.+|++|+...+++.| +++++.+. .+|||+-.+-.+.+.+.++++.|++..+.
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555555551 123699999987653344 56777775 68999888888999999999999999886
No 202
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.06 E-value=18 Score=35.77 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
.+|||||....+...|...|++.|+.+.++..... ++.+.. ..||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEE
Confidence 58999999888999999999999988776665322 233333 45788887
No 203
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.95 E-value=1.2e+02 Score=33.82 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=58.5
Q ss_pred CCEEEEEeCCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHh-C---
Q 009017 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETA-K--- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~---~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~--mp~~~dGlellr~L-r--- 87 (546)
+.+|+|++-|..-. ..+..+.+..|..+..+.+..++.+.+.. ..+|+||+|.. ++...+.++-+..+ +
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~ 329 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFG 329 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc
Confidence 46899998887322 23444444556666666667777777776 57999999962 11101122222221 1
Q ss_pred ----CCcEEEEecCCChHHHHHHHH----cCCCEEEeCCCCH
Q 009017 88 ----DLPTIITSNIHCLSTMMKCIA----LGAVEFLRKPLSE 121 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al~----aGAdDYL~KP~~~ 121 (546)
.-.++++++....+.+.++++ .|.+.+|.--+|.
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDE 371 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDE 371 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 124667777666655555443 5677776654543
No 204
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.58 E-value=1.2e+02 Score=31.22 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=45.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
|+|||..-...+...+...|.+.||+|..+. +... ...+.. ....++..|+.-++ .+.+.++.+-+|+-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~-~~~l~~--~~v~~v~~Dl~d~~-----~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK-ASFLKE--WGAELVYGDLSLPE-----TLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH-hhhHhh--cCCEEEECCCCCHH-----HHHHHHCCCCEEEE
Confidence 3799999999999999888888899988554 4332 333333 34677777764322 34455665555554
No 205
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.02 E-value=53 Score=34.39 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC--EE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 19 RVLLLDQDSSAAAELKFKLE----AMDY--IV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le----~~Gy--~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
.|||-|.+-.+...+...+. ..++ .| +.+.+.+||.+.+.. .+|+|.+|-.-++ +--+.++.++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~e--~l~~av~~~~~~~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPVD--LMQQAVQLIRQQNP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHHhcCC
Confidence 47777777555544555443 2343 33 378999999999875 6899999943222 2222344443
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
++ .|..++--+.+.+.+..+.|+|.+.+
T Consensus 243 ~i-~leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 243 RV-KIEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred Ce-EEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 34 45556667888898999999887654
No 206
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=54.62 E-value=90 Score=36.03 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=46.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+.+||.|+...+.++ +.|+.+..-+ +-.+.++...- ...++||+-.+-++ ....++..+| +++||
T Consensus 424 ~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~--~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 424 VKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQ--TSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHH--HHHHHHHHHHHhCCCCeEE
Confidence 45666666665444332 2456554333 22233443333 45677776654332 2233333333 56666
Q ss_pred EEecCCChHHHHHHHHcCCCEEE
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL 115 (546)
+-+. +.+...+..++||+..+
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEEe
Confidence 6553 56667777888988664
No 207
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=54.47 E-value=1.2e+02 Score=31.73 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=57.9
Q ss_pred CEEEEEe--CCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEecCCCCCCCH--HHHH
Q 009017 18 LRVLLLD--QDSS---AAAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKFL 83 (546)
Q Consensus 18 ~rILIVD--DD~~---~~~~L~~~Le~~Gy~V~~ass~~eALe~-------L~~~~~~pDLVIlDl~mp~~~dG--lell 83 (546)
.+|+|+- +.+. ....+...|++.|+++.........+.. .......+|+||+= + .|| +..+
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~----G-GDGt~l~~~ 80 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVL----G-GDGTMLGIG 80 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEE----C-CcHHHHHHH
Confidence 3577773 2232 3456666777889887765433221110 01100247888772 3 566 3444
Q ss_pred HHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 84 ETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 84 r~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+.+. ++|++-+. .|=.+||. .++.+++...|.++++..
T Consensus 81 ~~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 81 RQLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HHhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 5443 67877554 35567888 688899998888876543
No 208
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=54.43 E-value=1.1e+02 Score=32.86 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=84.7
Q ss_pred CCCEEEEEeCC----HHHHHHHHHHHhhCCCEEEEEC--------CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHH
Q 009017 16 KGLRVLLLDQD----SSAAAELKFKLEAMDYIVSTFY--------NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSF 80 (546)
Q Consensus 16 ~~~rILIVDDD----~~~~~~L~~~Le~~Gy~V~~as--------s~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGl 80 (546)
...+|||.-.. ...+..|.+.|+..|+.|..+. .. .++++.+.+ ..+|+|++=- ..+.
T Consensus 141 ~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~--~~~d~v~FtS-----~stv 213 (381)
T PRK07239 141 AGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIAS--RGLDAVTFTS-----APAV 213 (381)
T ss_pred CCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHc--CCccEEEEcC-----HHHH
Confidence 34678886322 0125678889999887755221 11 345666766 6789888732 1222
Q ss_pred H-HHHHh--------------CCCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcC----CC
Q 009017 81 K-FLETA--------------KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG----GS 141 (546)
Q Consensus 81 e-llr~L--------------r~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~----~~ 141 (546)
+ |++.+ ..+.|+.|.. .....+-+.|...++.+..+.+.|++.|...+....... ..
T Consensus 214 ~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp----~Ta~al~~~G~~~~vp~~~t~~~Lv~~i~~~~~~~~~~~~~~~~~ 289 (381)
T PRK07239 214 AALLERAREMGLLDQLLAALRTDVLAACVGP----VTAAPLVRAGVPTSAPERMRLGALARHITEELPLRRARTLRAAGH 289 (381)
T ss_pred HHHHHHHHHcCChHHHHHhhccCCEEEEECH----HHHHHHHHcCCCccCCCCCCHHHHHHHHHHHhhhhcCceEEECCE
Confidence 2 22222 1344555543 344445667765567777899999998866554432110 00
Q ss_pred c------------ccCCchhhHHHHHHHHhhhhccchhhhhhhccc
Q 009017 142 A------------LSDSLKPVKESVVSMLHLKLENGESKNEKSENT 175 (546)
Q Consensus 142 ~------------~~~~Lt~re~evl~ll~l~~~l~~~e~ev~~dl 175 (546)
. ..-.|+.+|.+++.++...........++...+
T Consensus 290 ~l~~~~~~l~~~~~~i~Lt~~E~~lL~~L~~~~~~vvsr~~L~~~v 335 (381)
T PRK07239 290 VLEIRGHAVVVDGEVKPLSPAPMALLRALAARPGRVVSREDLLAAL 335 (381)
T ss_pred EEECCCCEEEECCEEEEcCHHHHHHHHHHHhCCCceEeHHHHHHHh
Confidence 0 023588999999998876655544444444433
No 209
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=54.19 E-value=1.7e+02 Score=29.77 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCC-----CCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTT-----SNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~as--s~~eALe~L~~~~~~pDLVIlDl~m-----p~~~dGlellr~Lr 87 (546)
..+++|+.+.+. .+.+....++.|. .|.... +.++..+.+.. .|++++-... .+ .-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E-~~~~~~~EA~a 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAE-GLPVVLLEAQA 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCcc-CCchHHHHHHH
Confidence 367777876543 3456666666443 343332 34566666665 4666653221 12 23678888886
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|||.... .. ..+.+..|..+++..+-+.++|.++|..++.
T Consensus 293 ~G~PvI~s~~-~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 SGVPVVATRH-GG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred cCCCEEEeCC-CC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 899885433 22 2344566778899999999999999888765
No 210
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=53.83 E-value=94 Score=32.07 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=52.8
Q ss_pred HHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH----HHHHHh----C-CCcEEEEecCCCh
Q 009017 31 AELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF----KFLETA----K-DLPTIITSNIHCL 100 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl----ellr~L----r-~iPIIvLSs~~d~ 100 (546)
..|...-.+.|.++. .+.+.+|+-..+.. ...|| .++.-+ ...+ +..+.| . +..+|.-|+-.+.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~---ga~iI--GINnRd-L~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~ 219 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKL---GAKII--GINNRD-LTTLEVDLETTEKLAPLIPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhC---CCCEE--EEeCCC-cchheecHHHHHHHHhhCCCCcEEEecCCCCCH
Confidence 344455556799965 89999998888775 23444 333333 2222 222333 2 4556666777789
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+.+.+....||++||+=
T Consensus 220 ~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 220 EDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 99999999999999974
No 211
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=53.61 E-value=52 Score=33.16 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHhCCCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAKDLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell-r~Lr~iPI 91 (546)
.-+|.-||-++...+.-++.|++.|+. |.... +..+.++.... ..||+||+|..=.....-++.+ +.|+.--|
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~--~~fDliFIDadK~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD--GSFDLVFIDADKADYPEYLERALPLLRPGGL 161 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC--CCccEEEEeCChhhCHHHHHHHHHHhCCCcE
Confidence 348999999999999999999998764 44333 55555555333 6899999998754411223322 33455555
Q ss_pred EEEe
Q 009017 92 IITS 95 (546)
Q Consensus 92 IvLS 95 (546)
|++-
T Consensus 162 iv~D 165 (219)
T COG4122 162 IVAD 165 (219)
T ss_pred EEEe
Confidence 5543
No 212
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=53.48 E-value=1.4e+02 Score=32.37 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCEEEEEeCCH-----HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDS-----SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~-----~~~~~L~~~Le~~Gy--~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+++|+.+.. ...+.|+++.++.+. .|.... +.++..+.++. .|++|.-. ..+ .-|+.+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s-~~E-~Fgi~~lEAMa 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTM-WNE-HFGIGVVEYMA 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECC-ccC-CcccHHHHHHH
Confidence 36788887642 355667666666554 344433 45677777765 47766633 334 45788888886
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|+|+.........+..-...|..+|+.. +.+++.++|..++.
T Consensus 347 ~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred cCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 777775443222222221111578889963 89999999888775
No 213
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=53.38 E-value=40 Score=33.16 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=40.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--E-EEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--V-STFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V-~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
.-++++||-|......|++-++..+++ + +...+...++..+... ..||+|++|-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 357999999999999999999877632 3 3455556777777662 2599999995
No 214
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.32 E-value=1.9e+02 Score=33.43 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
..+++||.|.+ ....++...++.|. .|.......+.-.++.. .|+.++-.. .+ .-|+.+++.+. .+|||.
T Consensus 429 dirLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~E-Gfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 429 ATRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YE-GLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred CeEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-cc-CccHHHHHHHHhCCCEEE
Confidence 36778887765 34567777776664 25555555555555554 588777432 34 45778888886 899985
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
... .. ..+.+..|..+|+..+.+...|.+.+.
T Consensus 502 Tdv-GG---~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 TPA-GG---SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred eCC-CC---cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 433 22 234566899999999998877766553
No 215
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=53.26 E-value=74 Score=28.23 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=54.5
Q ss_pred CEEEEEeCCH----HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh---CCC
Q 009017 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KDL 89 (546)
Q Consensus 18 ~rILIVDDD~----~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L---r~i 89 (546)
.+||++=... .+...+++.+++.|+.+. .+.+..+.-..+.. ..+|+||+--+..- -++-++.+ .++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--~~~DvIll~PQi~~---~~~~i~~~~~~~~i 76 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAA--AEYDLYLVSPQTKM---YFKQFEEAGAKVGK 76 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhcc--CCCCEEEEChHHHH---HHHHHHHHhhhcCC
Confidence 4677775444 344556677777888765 45555555554444 46899999643321 12223333 268
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
||.++.. .+|-.-|++.+.++..|.
T Consensus 77 pv~~I~~---------------~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 77 PVVQIPP---------------QAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred CEEEeCH---------------HHcCCCccCHHHHHHHHH
Confidence 9988754 345555677777766554
No 216
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.68 E-value=2.2e+02 Score=30.38 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEEEeC---C-HHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----------CCCC--H
Q 009017 19 RVLLLDQ---D-SSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----------NTDG--S 79 (546)
Q Consensus 19 rILIVDD---D-~~~~~~L~~~Le~~G-y~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp----------~~~d--G 79 (546)
.+++||- + ....+.++.+=+... ..|. .+.+.++|..++.. .+|+|++...-. .... +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 5777753 2 222333333322332 3343 47788888887765 578877553211 0011 3
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+..++.++ ++|||.-.+-....++.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 44566554 699998888889999999999999988764
No 217
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=52.53 E-value=98 Score=31.98 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=44.9
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.|++|+=. ..+ .-|+.+++.+. .+|||....... ..+.+..|..+|+..+-+.++|..+|..++..
T Consensus 279 ad~~v~~S-~~E-g~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTS-QSE-GFGLSLMEALSHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEecc-ccc-ccChHHHHHHhCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 35544432 233 45778888886 789886532211 23345678899999999999999999887753
No 218
>PLN02316 synthase/transferase
Probab=52.10 E-value=1.2e+02 Score=37.27 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=64.4
Q ss_pred CCEEEEEeC--CHHHHHHHHHHHhhCCC----EEEEECCHHHHH--HHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-
Q 009017 17 GLRVLLLDQ--DSSAAAELKFKLEAMDY----IVSTFYNENEAL--SAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIVDD--D~~~~~~L~~~Le~~Gy----~V~~ass~~eAL--e~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr- 87 (546)
..+++|+.+ +......+..+..+.+. .|..+....+.+ .++. ..|++|+=- +-+ .-|+..++.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya----aADiflmPS-~~E-P~GLvqLEAMa~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA----GADFILVPS-IFE-PCGLTQLTAMRY 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH----hCcEEEeCC-ccc-CccHHHHHHHHc
Confidence 356777775 33344555555554322 343322223333 2333 368888753 344 56888888887
Q ss_pred CCcEEEEecCCChHHHHHH---------HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKC---------IALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~A---------l~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.+|+|+-..-.-.+.+... ...|..+|+..+.+.+.|..+|.+++..
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 5566653222233333221 0124789999999999999998888764
No 219
>PLN02591 tryptophan synthase
Probab=51.69 E-value=1.2e+02 Score=31.17 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EE-CCH-HHHHHHhhcCCCCeeEEEE-e-cCCCCC-----CCHHHHHHHhC-
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TF-YNE-NEALSAFSDKPENFHVAIV-E-VTTSNT-----DGSFKFLETAK- 87 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~-~a-ss~-~eALe~L~~~~~~pDLVIl-D-l~mp~~-----~dGlellr~Lr- 87 (546)
-|+|.|-...-...+...+++.|...+ .+ .+. ++=++.+.. ...+.|=+ . ....+. .+-.++++.+|
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~--~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE--ASEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH--hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 367777777777778888888887744 33 333 333444444 23333322 1 111110 11234566665
Q ss_pred --CCcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 88 --~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
++||++=.+-.+.+.+.++++.|||+.++-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 7899886777788999999999999999864
No 220
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=51.65 E-value=2.2e+02 Score=29.04 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=35.1
Q ss_pred HHHHHHHhC-CCcEEEEecC---CChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009017 79 SFKFLETAK-DLPTIITSNI---HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQHVVH 133 (546)
Q Consensus 79 Glellr~Lr-~iPIIvLSs~---~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~vlr 133 (546)
+..+++.+. .+|+|++... .+.....+.+..+..+++..+-+ .++|.++|..++.
T Consensus 260 ~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 260 ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 456667665 8999876321 12122234455666788876654 8999998887764
No 221
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=51.61 E-value=45 Score=33.74 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=46.6
Q ss_pred CEEEEEeCCH------HHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh-CCC
Q 009017 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDL 89 (546)
Q Consensus 18 ~rILIVDDD~------~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L-r~i 89 (546)
|+||++.... .....+...|.+.|++|..+. +.......+.. ..+|+|.+-..... .-.+..+..+ +.+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~-~~~~~~~~~~~~~~ 77 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGG-FLSIEDLSKLLDRK 77 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccC-ccCHHHHHHHHcCC
Confidence 4788775543 466678888888899977444 33344455555 68999988653333 3334445544 478
Q ss_pred cEEEEe
Q 009017 90 PTIITS 95 (546)
Q Consensus 90 PIIvLS 95 (546)
|+|+..
T Consensus 78 ~~v~~~ 83 (365)
T cd03825 78 PVVWTL 83 (365)
T ss_pred CEEEEc
Confidence 877553
No 222
>PRK05670 anthranilate synthase component II; Provisional
Probab=51.39 E-value=18 Score=34.85 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC--C-CCCCHHHHHHHhC-CCcEEEEe
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--S-NTDGSFKFLETAK-DLPTIITS 95 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m--p-~~~dGlellr~Lr-~iPIIvLS 95 (546)
|||||....+...+.+.|++.|+.+............+.. ..+|.||+-=.- + +...-.++++.+. .+||+-+.
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIC 79 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVC 79 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC
Confidence 8999999999999999999999987765443211222333 347877772110 0 0001123444443 57877664
No 223
>PRK04302 triosephosphate isomerase; Provisional
Probab=51.36 E-value=1.7e+02 Score=28.97 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-CCCC--------CCH-HHHHHHhC----CCcEEEEecCCCh
Q 009017 36 KLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-TSNT--------DGS-FKFLETAK----DLPTIITSNIHCL 100 (546)
Q Consensus 36 ~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~-mp~~--------~dG-lellr~Lr----~iPIIvLSs~~d~ 100 (546)
...+.|..++ ++.+.+++.. +.. ..+|+|-+.-. .-+. ..+ .++++.++ ++|||.-.+-.+.
T Consensus 109 ~a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~ 185 (223)
T PRK04302 109 RAKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTG 185 (223)
T ss_pred HHHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCH
Confidence 3345688755 5555555554 444 45676654321 1010 011 23344454 5788888887889
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+.+..+++.|+++++.-
T Consensus 186 e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 186 EDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHcCCCCEEEEe
Confidence 99999999999999865
No 224
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.30 E-value=46 Score=36.93 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhc
Q 009017 348 VASHLQKYRMHRR 360 (546)
Q Consensus 348 v~shlqkyr~~~~ 360 (546)
-+.-++|-|..+.
T Consensus 329 eak~~kKQrk~r~ 341 (483)
T KOG2236|consen 329 EAKQMKKQRKRRS 341 (483)
T ss_pred HHHHHHHHhhccc
Confidence 5666655554443
No 225
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.12 E-value=1.1e+02 Score=26.34 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=43.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
|+|+.-....+. +.+.|.+.++.|+..+.-.+..+.+.. ..+.++.-|.. -.+.++++. +.-.|+++..
T Consensus 1 vvI~G~g~~~~~-i~~~L~~~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~~------~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGRE-IAEQLKEGGIDVVVIDRDPERVEELRE--EGVEVIYGDAT------DPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHH-HHHHHHHTTSEEEEEESSHHHHHHHHH--TTSEEEES-TT------SHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHH-HHHHHHhCCCEEEEEECCcHHHHHHHh--cccccccccch------hhhHHhhcCccccCEEEEccC
Confidence 577877765554 445555577788877777777777776 45777666542 355677665 5555555544
Q ss_pred CChH
Q 009017 98 HCLS 101 (546)
Q Consensus 98 ~d~e 101 (546)
.+..
T Consensus 72 ~d~~ 75 (116)
T PF02254_consen 72 DDEE 75 (116)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 4433
No 226
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=50.91 E-value=83 Score=32.46 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCC--CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 19 RVLLLDQDSSAAAELKFKLE----AMD--YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le----~~G--y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
.|||.|++-.+...+...++ ..+ .. .+.+.+.+|+++.+.. ..|.|.+|-.-++ +--+.++.++ .+|
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~e--~lk~~v~~~~~~ip 224 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKPE--EIKEAVQLLKGRVL 224 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhcCCCc
Confidence 47888887655543333332 233 23 3589999999998865 5899999864333 1122333343 466
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
|+ .++--+.+.+....+.||+.+-+
T Consensus 225 i~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 225 LE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred EE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 55 45556788899999999987754
No 227
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=50.76 E-value=1.7e+02 Score=30.26 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=64.6
Q ss_pred CEEEEEeC---CHHHHHHHHHHHhhCCC---EEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-
Q 009017 18 LRVLLLDQ---DSSAAAELKFKLEAMDY---IVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (546)
Q Consensus 18 ~rILIVDD---D~~~~~~L~~~Le~~Gy---~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr- 87 (546)
.+++|+.+ .....+.++..+...+. .|..+ -+.++..+.+.. .|++|+=.. .+ .-|+.+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e-~~g~~~lEA~a~ 303 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YE-PLGIVNLEAMAC 303 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cC-CCChHHHHHHHc
Confidence 45555432 33444556665554432 13332 245666666655 577776432 23 45777888876
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSE------DKLRNLWQHVVH 133 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~------eeL~~~I~~vlr 133 (546)
.+|||+. .... ..+.+..|..+++..+-+. ++|.+.|..++.
T Consensus 304 G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 304 GTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred CCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 8998764 3322 3445667888999998887 888888877654
No 228
>PRK13566 anthranilate synthase; Provisional
Probab=50.62 E-value=40 Score=39.70 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHhC--CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK--DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~--mp~~~dGlellr~Lr--~iPI 91 (546)
.+++|||||....+...|.++|++.|++|.++..... .+.+.. ..+|.||+-=. .+...+-.++++.+. ++||
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAALARNLPI 601 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcE
Confidence 4679999999988899999999999999886654432 223333 45898887311 111012345555542 7898
Q ss_pred EEEec
Q 009017 92 IITSN 96 (546)
Q Consensus 92 IvLSs 96 (546)
+-+.-
T Consensus 602 LGICl 606 (720)
T PRK13566 602 FGVCL 606 (720)
T ss_pred EEEeh
Confidence 87653
No 229
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.61 E-value=1.5e+02 Score=29.92 Aligned_cols=85 Identities=5% Similarity=-0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCCEEE-EECC--HHHHHHHhhcCCCCeeEEEEecCCCCCCCH------HHHHHHhC----CCcEEEEe
Q 009017 29 AAAELKFKLEAMDYIVS-TFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGS------FKFLETAK----DLPTIITS 95 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~-~ass--~~eALe~L~~~~~~pDLVIlDl~mp~~~dG------lellr~Lr----~iPIIvLS 95 (546)
....+...+++.|.++. .++. ..+.++.+.. ....++++- ..|+ ..+ .+.++++| +.+|++=.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~ms-v~~~-~g~~~~~~~~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYYG-LRPA-TGVPLPVSVERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEEE-eCCC-CCCCchHHHHHHHHHHHHhcCCCCEEEeC
Confidence 34556677788888755 3332 2344454444 345677773 3443 211 23444554 35655434
Q ss_pred cCCChHHHHHHHHcCCCEEEeC
Q 009017 96 NIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~K 117 (546)
+-.+.+.+..++++||+.++.-
T Consensus 193 GI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 193 GLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CcCCHHHHHHHHHcCCCEEEEC
Confidence 4447888888899999999986
No 230
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=50.44 E-value=3e+02 Score=29.56 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
.+||.||.- . +.......+.+. +++++ .++...+..+.+.+ .+++-.. .+--+++.. -++-+|.
T Consensus 3 ~~rVgViG~-~-~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~---~~gi~~y-------~~~eell~d-~Di~~V~ 69 (343)
T TIGR01761 3 VQSVVVCGT-R-FGQFYLAAFAAAPERFELAGILAQGSERSRALAH---RLGVPLY-------CEVEELPDD-IDIACVV 69 (343)
T ss_pred CcEEEEEeH-H-HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---HhCCCcc-------CCHHHHhcC-CCEEEEE
Confidence 478999987 4 344444555443 57766 45544443343433 2332110 122233321 1455555
Q ss_pred Eec----CCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 94 TSN----IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 94 LSs----~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
+.. ..-.+.+.+|+++|..=++-||+..+|..+.++.
T Consensus 70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~ 110 (343)
T TIGR01761 70 VRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRL 110 (343)
T ss_pred eCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHH
Confidence 521 2447889999999999999999996666554443
No 231
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.20 E-value=1.6e+02 Score=30.78 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=57.7
Q ss_pred CEEEEEeC--CH---HHHHHHHHHHhhCCCEEEEECCHHHHHHH----------h---hcCCCCeeEEEEecCCCCCCCH
Q 009017 18 LRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALSA----------F---SDKPENFHVAIVEVTTSNTDGS 79 (546)
Q Consensus 18 ~rILIVDD--D~---~~~~~L~~~Le~~Gy~V~~ass~~eALe~----------L---~~~~~~pDLVIlDl~mp~~~dG 79 (546)
|+|.|+-. .+ .....+..+|++.|+.+.......+.+.. . ......+|+||+ + + .||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---l-G-GDG 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---I-G-GDG 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---E-C-CcH
Confidence 35666622 22 23456677787889988765543332210 0 110024687776 2 3 577
Q ss_pred --HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 80 --FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 80 --lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+..++.+. ++||+-+-. |-.+||. .++.+++...|.++++..
T Consensus 76 T~L~aa~~~~~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHHHhcCCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 34444443 688886542 5567776 478889988888877654
No 232
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=50.16 E-value=1.7e+02 Score=30.01 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=45.5
Q ss_pred CEEEEEeCCH----HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~----~~~~~L~~~Le~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.+|.++. .....+...+++.|++|+. + .+....+..+.. ..+|+||+... . .+...+++.+
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~~--~-~~~~~~~~~~ 216 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAGH--F-PDAVLLVRQM 216 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECCc--c-hhHHHHHHHH
Confidence 3555554443 2345567777788988752 2 344556677776 67999998654 2 3466777777
Q ss_pred C----CCcEEEEec
Q 009017 87 K----DLPTIITSN 96 (546)
Q Consensus 87 r----~iPIIvLSs 96 (546)
+ ..+++..+.
T Consensus 217 ~~~g~~~~~~~~~~ 230 (345)
T cd06338 217 KELGYNPKALYMTV 230 (345)
T ss_pred HHcCCCCCEEEEec
Confidence 6 456665544
No 233
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=50.15 E-value=2.6e+02 Score=30.58 Aligned_cols=98 Identities=10% Similarity=0.102 Sum_probs=58.4
Q ss_pred HHHHHHhhCCCEEEE----ECCHHHHHHHhhcCCCCeeEEEEecCC----CCCCCHHHHHHHhC---CCcEEEEecCCCh
Q 009017 32 ELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETAK---DLPTIITSNIHCL 100 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~~----ass~~eALe~L~~~~~~pDLVIlDl~m----p~~~dGlellr~Lr---~iPIIvLSs~~d~ 100 (546)
.+.+..++.|..+.. +.+..+.+..+.+ ...|.|.+.... .. ..+++.+++++ ++||++..+- ..
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~-~~~~~~l~~l~~~~~iPI~a~GGI-~~ 173 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLG-KDPLELLKEVSEEVSIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcC-CChHHHHHHHHhhCCCcEEEECCC-CH
Confidence 344555566766543 2233333333444 357888765422 12 34577888876 5888777655 67
Q ss_pred HHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 009017 101 STMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vlr 133 (546)
+.+.+++++||+.++. +.-++.+....++..++
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 7888999999997644 44455555555555444
No 234
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=49.44 E-value=31 Score=35.28 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=39.5
Q ss_pred CCCEEEEEe------CC--HHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 16 KGLRVLLLD------QD--SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 16 ~~~rILIVD------DD--~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
|+++|.|+- .+ ......+...|++.||+|..+....+.++.+.. ..+|+||.-+
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~~ 64 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNAL 64 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEec
Confidence 346787775 11 224577888899999999888766677777777 6799999754
No 235
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=49.26 E-value=2.1e+02 Score=31.48 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-------------------ECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVST-------------------FYNENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~-------------------ass~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
++||||||..-..--.... .|.+.++ .+.. ..+.++.++.+++ ..+|+|+++..-+
T Consensus 3 ~~~kvLviG~g~rehal~~-~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~--~~iD~Vv~g~E~~ 79 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAF-ALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKS--NPFDLIVVGPEDP 79 (426)
T ss_pred CCcEEEEECCCHHHHHHHH-HHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHH--cCCCEEEECCchH
Confidence 4579999998876554444 4444432 1211 2455566667777 6799999976554
Q ss_pred CCCCHH
Q 009017 75 NTDGSF 80 (546)
Q Consensus 75 ~~~dGl 80 (546)
- ..|+
T Consensus 80 l-~~gl 84 (426)
T PRK13789 80 L-VAGF 84 (426)
T ss_pred H-HHHH
Confidence 4 3443
No 236
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.20 E-value=2.5e+02 Score=27.06 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
.+.+.+++.+... ...|.|++.-..+.. ..|++.++.+. .+||+++.+- +.+.+.++++.|++.+.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 6677777766544 357888876433210 23567777775 6999988776 78889999999998873
No 237
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=49.11 E-value=1.7e+02 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 81 KFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 81 ellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
+.+.+++ ++|||...+-.+.+.+.+++..||+.+
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 5556665 689999888889999999999998863
No 238
>CHL00101 trpG anthranilate synthase component 2
Probab=49.01 E-value=20 Score=34.64 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=35.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|||||....+...|.+.|++.|+.+..+......+..+.. ..||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999888876644322233333 35787776
No 239
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.95 E-value=1.3e+02 Score=33.21 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=56.3
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcC--CCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDK--PENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~--~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
+.+|.+|+-|+.. .+.++.+-+..|+.+..+.+..+..+.+..- ...+|+||+|.-=-. ...-+.++.++
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~-~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN-YLAEESVSEISAYTD 312 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC-ccCHHHHHHHHHHhh
Confidence 4689999888642 3455556666677666677776655544320 025899999974211 11123333332
Q ss_pred ----CCcEEEEecCCChHHHHHHH----HcCCCEEEeCCCCH
Q 009017 88 ----DLPTIITSNIHCLSTMMKCI----ALGAVEFLRKPLSE 121 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al----~aGAdDYL~KP~~~ 121 (546)
+..++++++......+.+.+ ..+.+.+|.--+|.
T Consensus 313 ~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 313 VVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred ccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 22244555544444444443 35566776554543
No 240
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.92 E-value=67 Score=32.41 Aligned_cols=52 Identities=6% Similarity=0.183 Sum_probs=37.2
Q ss_pred CHHHHHHHhC---CCcEEEEecCCC------hHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 78 GSFKFLETAK---DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 78 dGlellr~Lr---~iPIIvLSs~~d------~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
.++++++.+| ++|+++|+-... ...+..+.++|+++++.-.+..+++...++
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 3566777776 589888876543 567888999999999997666665544333
No 241
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=48.91 E-value=1.2e+02 Score=30.64 Aligned_cols=103 Identities=10% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
..+++|+.+.+. .+.+.+.++..+. .|.......+..+++.. .|++|+-... + .-|..+++.+. .+|||+
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e-~~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-E-GFGLVVAEAMACELPVVA 291 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-c-CCChHHHHHHHcCCCEEE
Confidence 356777766553 3455566655442 34444444455555554 4777664433 3 34677888886 788875
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+...... +.+.. .+++..+.+.+++.+.|..++
T Consensus 292 -~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 292 -TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred -ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 3332222 22222 567888999999999988876
No 242
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=48.76 E-value=89 Score=29.78 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=47.7
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 44 VSTFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 44 V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
-..+.+.+++.+.... .+|.|++.--.+.. .-|++.++++. .+||+.+-+- +.+.+..+.+.||+++
T Consensus 99 g~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 99 GASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELREAGADGV 174 (180)
T ss_dssp EEEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEE
T ss_pred EeecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 3489999997666544 57999998765530 23788777765 7999999775 4556778899999987
Q ss_pred Ee
Q 009017 115 LR 116 (546)
Q Consensus 115 L~ 116 (546)
-.
T Consensus 175 Av 176 (180)
T PF02581_consen 175 AV 176 (180)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 243
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=48.53 E-value=1.3e+02 Score=28.87 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=53.2
Q ss_pred HHhhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcC
Q 009017 36 KLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALG 110 (546)
Q Consensus 36 ~Le~~Gy~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aG 110 (546)
..+..|..+ .-+.+.+|+.+.++. ..|+|-++- .+. .|.++++.++ .+|++.+.+- +.+.+.+.+++|
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~--~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G 164 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEA--VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAG 164 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Ccc--cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCC
Confidence 333445443 367799999888765 579988853 233 3888888886 4777766555 788999999999
Q ss_pred CCEEEeC
Q 009017 111 AVEFLRK 117 (546)
Q Consensus 111 AdDYL~K 117 (546)
++.+..-
T Consensus 165 ~~~v~v~ 171 (190)
T cd00452 165 VVAVGGG 171 (190)
T ss_pred CEEEEEc
Confidence 8877654
No 244
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=48.40 E-value=1.8e+02 Score=28.87 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=53.8
Q ss_pred HHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC------CCCCCCHHHHHHHhC--CCcEEEEecCCChH
Q 009017 31 AELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT------TSNTDGSFKFLETAK--DLPTIITSNIHCLS 101 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~------mp~~~dGlellr~Lr--~iPIIvLSs~~d~e 101 (546)
..+-..+++.+.-+. -+++.+|++...+. .+|+|=.=+. ... ...++|+++|. .+|||.=-...+.+
T Consensus 82 ~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~-~pD~~lv~~l~~~~~pvIaEGri~tpe 157 (192)
T PF04131_consen 82 EELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGD-GPDFELVRELVQADVPVIAEGRIHTPE 157 (192)
T ss_dssp HHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTS-SHHHHHHHHHHHTTSEEEEESS--SHH
T ss_pred HHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCC-CCCHHHHHHHHhCCCcEeecCCCCCHH
Confidence 344444555542222 67899999998876 5888765431 011 34588999886 78888777778999
Q ss_pred HHHHHHHcCCCEEEeC
Q 009017 102 TMMKCIALGAVEFLRK 117 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~K 117 (546)
.+.+|+++||+..++=
T Consensus 158 ~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 158 QAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHHHTT-SEEEE-
T ss_pred HHHHHHhcCCeEEEEC
Confidence 9999999999999874
No 245
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.03 E-value=81 Score=31.64 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=49.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHhCCCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAKDLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell-r~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..++++.+.+ ..-.+|++|+.-.+++.|++-+ +.+.++|||.--+-.+.+++.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~--~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKN--YVNRFIYTSIERDGTLTGIEEIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHH--HhCEEEEEeccchhcccCHHHHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 34566666655 3236999999887756787633 333589999988888999999999999998765
No 246
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.78 E-value=1.4e+02 Score=33.34 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCEEEEEeCC----HHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 009017 17 GLRVLLLDQD----SSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (546)
Q Consensus 17 ~~rILIVDDD----~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----------~d 78 (546)
+..++++|.. ....+.+..+-.+. +..|. .+.+.++|..++.. ..|.|.+.+. |+. ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCcC
Confidence 4668888753 12333333333333 33333 56678888887765 4687765331 110 01
Q ss_pred HHHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 79 Glellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
-++++..+ + .+|||.=.+-....++.+|+.+||+..+.=
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 13343322 2 578887778888999999999999988764
No 247
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.60 E-value=1.7e+02 Score=30.33 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=53.6
Q ss_pred CEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHH---HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 18 LRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEA---LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 18 ~rILIVDDD~~---~~~~L~~~Le~~Gy~V~~ass~~eA---Le~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
.+|.+|+-|.. ....++...+..|+.+..+.+..+. ++.+... ..+|+||+|.-=-. ....+.++++.
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~Gr~-~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTAGKN-YRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECCCCC-cCCHHHHHHHHHHHh
Confidence 57777777654 3445556666678888776666443 4444331 36899999974211 11223333332
Q ss_pred ----CCcEEEEecCCChHHHH---HH-HHcCCCEEEeCCCC
Q 009017 88 ----DLPTIITSNIHCLSTMM---KC-IALGAVEFLRKPLS 120 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~---~A-l~aGAdDYL~KP~~ 120 (546)
+..++++++....+.+. +. -..+.+.+|.--++
T Consensus 182 ~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 QVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred hhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 22355666543333332 22 23566666554444
No 248
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.60 E-value=1.3e+02 Score=30.78 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=50.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~as-------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr- 87 (546)
+.+|.++...+...+.+.+.|++. |.++.-+. ..++.++.+.. ..+|+|++.+.+|. .+- ++.+++
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~--s~~dil~VglG~Pk-QE~--~~~~~~~ 179 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA--SGAKIVTVAMGSPK-QEI--FMRDCRL 179 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEECCCcH-HHH--HHHHHHH
Confidence 478999999999999999988653 55554322 12345677777 68999999999987 432 444444
Q ss_pred --CCcEEEE
Q 009017 88 --DLPTIIT 94 (546)
Q Consensus 88 --~iPIIvL 94 (546)
..++++-
T Consensus 180 ~~~~~v~~g 188 (243)
T PRK03692 180 VYPDALYMG 188 (243)
T ss_pred hCCCCEEEE
Confidence 3455443
No 249
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=47.56 E-value=74 Score=31.79 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=49.7
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..++++.+.+. ..-.+|++|+.-.+.+.| +++++.++ ++|+|+--+-.+.+++.++.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 467777777662 234699999987664555 56677775 89999888888999999999999998875
No 250
>PRK04148 hypothetical protein; Provisional
Probab=47.16 E-value=1.5e+02 Score=27.63 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
..+||+|.-- +...+...|.+.|++|+..+...++++.++. ...+++..|+.-|+
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~ 71 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPN 71 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCC
Confidence 3578888766 4444677788889999999988889988887 56799999998877
No 251
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=46.98 E-value=1.3e+02 Score=34.83 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=69.0
Q ss_pred HHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC------CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr------~iPIIvLSs~ 97 (546)
.......|++.||.+. -+.++...+..+.. -.+|.|-+|-.+-.. .....+++.|. .+.+ +..+-
T Consensus 680 ~~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gV 756 (799)
T PRK11359 680 IFKRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGV 756 (799)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcC
Confidence 3445556788899976 46788888888888 779999999755210 12234555442 4444 46677
Q ss_pred CChHHHHHHHHcCCC----EEEeCCCCHHHHHHHHHH
Q 009017 98 HCLSTMMKCIALGAV----EFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 98 ~d~e~i~~Al~aGAd----DYL~KP~~~eeL~~~I~~ 130 (546)
.+.+....+.+.|++ .|+.||...++|...|+.
T Consensus 757 e~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 757 ETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 788888889999987 358899999999886543
No 252
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.83 E-value=1.8e+02 Score=29.04 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred HHHHHhhCCCE-EEEECCHHHHHHHhhcCC-CCeeEEEEecCCCCCCCHHHHHHHhC-CCc-E-EEEecCCChHHHHHHH
Q 009017 33 LKFKLEAMDYI-VSTFYNENEALSAFSDKP-ENFHVAIVEVTTSNTDGSFKFLETAK-DLP-T-IITSNIHCLSTMMKCI 107 (546)
Q Consensus 33 L~~~Le~~Gy~-V~~ass~~eALe~L~~~~-~~pDLVIlDl~mp~~~dGlellr~Lr-~iP-I-IvLSs~~d~e~i~~Al 107 (546)
+.+.|.+.+.- |+...+.++++..++.-. ..+++| .+.+.. .++++.++.++ ..| + |-.-.-.+.+.+..++
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~-~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~ 84 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRT-PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI 84 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCC-ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH
Confidence 44555665544 557777887777654310 234543 444444 56888888886 222 2 2222334668899999
Q ss_pred HcCCCEEEeCCCCHHHHHHH
Q 009017 108 ALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 108 ~aGAdDYL~KP~~~eeL~~~ 127 (546)
++||+- ++-|.-..++++.
T Consensus 85 ~aGA~F-ivsP~~~~~vi~~ 103 (212)
T PRK05718 85 EAGAQF-IVSPGLTPPLLKA 103 (212)
T ss_pred HcCCCE-EECCCCCHHHHHH
Confidence 999865 4445444465553
No 253
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=46.79 E-value=27 Score=39.64 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=48.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEEecCCCCC-CC--HHHHHHHhC-CCc
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIVEVTTSNT-DG--SFKFLETAK-DLP 90 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~---~eALe~L~~~~~~pDLVIlDl~mp~~-~d--Glellr~Lr-~iP 90 (546)
++|||||....+...|.++|++.|+.+.++.+. ...++.+.. ..||.||+.=.-... .. -.++++.+. .+|
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iP 79 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLP 79 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCC
Confidence 589999999999999999999999887766542 223444444 456777775321110 11 134555443 688
Q ss_pred EEEEe
Q 009017 91 TIITS 95 (546)
Q Consensus 91 IIvLS 95 (546)
|+-+.
T Consensus 80 ILGIC 84 (531)
T PRK09522 80 IIGIC 84 (531)
T ss_pred EEEEc
Confidence 77664
No 254
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=46.77 E-value=2.9e+02 Score=29.66 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=67.7
Q ss_pred CEEEEEeCCHHHHHHHHH------HHhhCCCEE-E-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CC---CCHHHHHHH
Q 009017 18 LRVLLLDQDSSAAAELKF------KLEAMDYIV-S-TFYNENEALSAFSDKPENFHVAIVEVTTS-NT---DGSFKFLET 85 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~------~Le~~Gy~V-~-~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~---~dGlellr~ 85 (546)
+|+=|+.|+......+.. .|-+.||.| . +..|...|-++..- .+ +.++=+--| ++ ...-+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 456666655544433322 233459998 3 55566666555444 23 333321111 10 111234444
Q ss_pred hC---CCcEEEEecCCChHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 009017 86 AK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 86 Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~-----KP~~~eeL~~~I~~vlrr 134 (546)
+. ++|||+=.+-...+++..|+++|+++.|. |--++-.+..+++..++.
T Consensus 244 ~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 244 IVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 43 79999988889999999999999999865 456677777776666553
No 255
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=46.74 E-value=1.6e+02 Score=29.64 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=63.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHhC-
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTF--YNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK- 87 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~a--ss~~eALe~L~~~~~~pDLVIlDl~mp-----~~~dGlellr~Lr- 87 (546)
.+++|+.+... ...+...++..+. .|... -+.++....+.. .|++|+-..-. + .-|..+++.+.
T Consensus 211 ~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e-~~~~~~~Ea~a~ 284 (355)
T cd03799 211 FRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDRE-GLPVVLMEAMAM 284 (355)
T ss_pred eEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCcc-CccHHHHHHHHc
Confidence 45666654432 2344455544332 23322 234566666665 46666643321 3 33677888776
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|+|.. .... ..+.++.+..+++..+-+.++|.+.|..++.
T Consensus 285 G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 285 GLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred CCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8888753 3222 2345667778999999999999999887764
No 256
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=46.72 E-value=28 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 009017 496 VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 539 (546)
Q Consensus 496 ~~d~~~~~~~~~p~~p~p~glk~p~~~~v~~el~~~g~~~~p~~ 539 (546)
.|.+-|+|+|.+-. .-..|++..||..|+..-|++.||.
T Consensus 27 ~l~~rv~ei~~~~~-----~~~~~~l~~V~~~L~~e~ip~LPPG 65 (81)
T PF07830_consen 27 YLEQRVEEIIEKSS-----EEENPDLVYVMRTLASEDIPGLPPG 65 (81)
T ss_dssp HHHHHHHHHT---------------HHHHHHHHHHTT-SS--TT
T ss_pred HHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHhccCCCCcCC
Confidence 35566788998832 3567899999999999999999996
No 257
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.65 E-value=1.1e+02 Score=31.22 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=45.2
Q ss_pred CEEE-EEeCCHHHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 18 LRVL-LLDQDSSAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 18 ~rIL-IVDDD~~~~~~L~~~Le~~Gy~V~~ass-------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
..|. ++.++... +.+.|+..||.|....+ ..+.++.++. ..+|+||+|.-- .+. +..+.++
T Consensus 32 ~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~y~---~~~-~~~~~~k~~ 102 (279)
T TIGR03590 32 AEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDHYG---LDA-DWEKLIKEF 102 (279)
T ss_pred CEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcCCC---CCH-HHHHHHHHh
Confidence 4554 44444332 34677788999876643 4467777777 679999999852 222 3455554
Q ss_pred CCcEEEEecCCC
Q 009017 88 DLPTIITSNIHC 99 (546)
Q Consensus 88 ~iPIIvLSs~~d 99 (546)
..+++++....+
T Consensus 103 ~~~l~~iDD~~~ 114 (279)
T TIGR03590 103 GRKILVIDDLAD 114 (279)
T ss_pred CCeEEEEecCCC
Confidence 456777776543
No 258
>PRK14099 glycogen synthase; Provisional
Probab=46.41 E-value=1.3e+02 Score=33.60 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=57.6
Q ss_pred CEEEEEeC-CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEE
Q 009017 18 LRVLLLDQ-DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDD-D~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvL 94 (546)
.+++|+.+ +....+.++++.++.+-.+. ...--++....+.. ..|++|+=. .-+ .-|+..++.++ .+|+|+
T Consensus 325 ~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a---~aDifv~PS-~~E-~fGl~~lEAma~G~ppVv- 398 (485)
T PRK14099 325 AQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQA---GADALLVPS-RFE-PCGLTQLCALRYGAVPVV- 398 (485)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHh---cCCEEEECC-ccC-CCcHHHHHHHHCCCCcEE-
Confidence 45555554 33344555555544432332 22222222233322 257777743 334 56788888887 545554
Q ss_pred ecCCCh-HHHHHHHH----cC-CCEEEeCCCCHHHHHHHHHHHH
Q 009017 95 SNIHCL-STMMKCIA----LG-AVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 95 Ss~~d~-e~i~~Al~----aG-AdDYL~KP~~~eeL~~~I~~vl 132 (546)
|..... +.+...-+ .| ..+|+..|.+.++|..+|.+++
T Consensus 399 s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 399 ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 433222 22222100 12 5799999999999999988643
No 259
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.32 E-value=72 Score=33.39 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=59.7
Q ss_pred EEEEeCCHHHHH---HHHHHHh----hCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---
Q 009017 20 VLLLDQDSSAAA---ELKFKLE----AMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (546)
Q Consensus 20 ILIVDDD~~~~~---~L~~~Le----~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--- 87 (546)
|||-|++-.+.. .+...++ ..+ .-.+.+.+.++|.+.+.. .+|+|++|-.-|+ +--++++.++
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn~~~e--~l~~av~~~~~~~ 234 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDKFSPQ--QATEIAQIAPSLA 234 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccC
Confidence 666666654443 2333332 222 234588899999999986 5899999954333 3334444443
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.-.+|-.|+--+.+.+.+..+.|+|-+..
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 33466678888899999999999876644
No 260
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=46.07 E-value=1.8e+02 Score=29.45 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
..+++|+.+.+. ...++..+++.+. .|......++..+.+.. .|++|+-... + .-|+.+++.+. .+|||+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E-~~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-E-GLPLVLIEAQASGLPCIL 295 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-c-CCCHHHHHHHHhCCCEEE
Confidence 356777765443 3345555544442 23333323444455544 5777764433 3 45778888886 899986
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
... ..... .+.. ...|+..+-+.+++.++|..++..
T Consensus 296 s~~-~~~~~---~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 296 SDT-ITKEV---DLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EcC-Cchhh---hhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 433 33222 2333 346777777889999998887754
No 261
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.67 E-value=2.8e+02 Score=28.34 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=54.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE-EEC--CHHHHHHHhhcCCCCeeEEEEecCCCCC-----CCHHHHHHHhC---C
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVS-TFY--NENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK---D 88 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~-~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~-----~dGlellr~Lr---~ 88 (546)
|+|.|--......+...+++.|.... .+. +..+-+..+......+..++.=....+. .+-.+.++++| +
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC
Confidence 44445444555666677777887633 222 2233333333311124444331111110 12355666666 5
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
.||++=-+-.+.+.+.++.++||+.++.-.
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 787664445568899999999999999863
No 262
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=45.44 E-value=1.4e+02 Score=29.18 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=42.2
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.|++|+-... + .-|..+++.+. .+|||+ |.... ..+.+..|..+++..+-+.+++.++|..++.
T Consensus 264 adi~i~ps~~-e-~~~~~~~Ea~~~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 264 ADVFVLPSYR-E-GLPRVLLEAMAMGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred ccEEEecCcc-c-CcchHHHHHHHcCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 3555553332 3 34667777776 788876 33322 2344556778899999999999998887654
No 263
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=45.42 E-value=1.8e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=17.3
Q ss_pred EEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 22 LLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 22 IVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
+-|.+......+...|.+.||.+....
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEch
Confidence 334555555566777777899886543
No 264
>smart00426 TEA TEA domain.
Probab=45.40 E-value=16 Score=30.28 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=15.9
Q ss_pred ccchhhhhhHHHHHHHhc
Q 009017 308 SCGNKANRKKMKAVEQLG 325 (546)
Q Consensus 308 ~~~~~lh~~f~~av~~lg 325 (546)
-|.+++-..|++|++..=
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 689999999999998774
No 265
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=45.28 E-value=3.3e+02 Score=29.29 Aligned_cols=106 Identities=9% Similarity=0.189 Sum_probs=67.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EEEE---CCHHHHHHHhhcCCCCeeEEEEe-cCCCCCCCHHHHHHHhC-CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI-VSTF---YNENEALSAFSDKPENFHVAIVE-VTTSNTDGSFKFLETAK-DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~a---ss~~eALe~L~~~~~~pDLVIlD-l~mp~~~dGlellr~Lr-~iPI 91 (546)
++++|+.+-+ .++.+.+.+++.|.. ++.+ -..++..+.+.. .|+.++= -...+..-+..+++.+. .+||
T Consensus 270 i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~~~~~~~~~~~p~~~~Eama~G~PV 344 (415)
T cd03816 270 LLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVSLHTSSSGLDLPMKVVDMFGCGLPV 344 (415)
T ss_pred EEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEEccccccccCCcHHHHHHHHcCCCE
Confidence 6777887765 466777787777654 4433 245677676666 4666531 11111012456777776 8999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|.. .... ..+.++.|..+++.. +.++|.++|..++..
T Consensus 345 I~s-~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 345 CAL-DFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred EEe-CCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 874 3332 345667788899984 889999988877654
No 266
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.27 E-value=1.3e+02 Score=31.44 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=41.1
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-----EECCHHHHHHHhhcCCCCeeEEEEe
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-----TFYNENEALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-----~ass~~eALe~L~~~~~~pDLVIlD 70 (546)
+.+.-+||=+|.|+...+.-...-++.|..+. .-.-.+...+++.. ..|||+++-
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViT 160 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE--VRPDILVIT 160 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH--hCCCEEEEe
Confidence 34456899999999999888888887776544 33445567778888 789988773
No 267
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=45.24 E-value=1.6e+02 Score=33.30 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=48.9
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCC--------------CCCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHH
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTT--------------SNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIA 108 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~m--------------p~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~ 108 (546)
-+.+.++|..++.. ..|.|.+.+.- |. ...+..+..+. .+|||+=.+-.....+.+|+.
T Consensus 296 ~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~-~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla 371 (505)
T PLN02274 296 NVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ-ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT 371 (505)
T ss_pred cCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc-ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 47788888887765 57888775311 11 22334444443 689999999999999999999
Q ss_pred cCCCEEEeC
Q 009017 109 LGAVEFLRK 117 (546)
Q Consensus 109 aGAdDYL~K 117 (546)
+||+.++.=
T Consensus 372 ~GA~~V~vG 380 (505)
T PLN02274 372 LGASTVMMG 380 (505)
T ss_pred cCCCEEEEc
Confidence 999988764
No 268
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.21 E-value=1.6e+02 Score=30.87 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCEEEEEeC--CH---HHHHHHHHHHhhCCCEEEEECCHHHHHH--Hh-hcCCCCeeEEEEecCCCCCCCH--HHHHHHh
Q 009017 17 GLRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALS--AF-SDKPENFHVAIVEVTTSNTDGS--FKFLETA 86 (546)
Q Consensus 17 ~~rILIVDD--D~---~~~~~L~~~Le~~Gy~V~~ass~~eALe--~L-~~~~~~pDLVIlDl~mp~~~dG--lellr~L 86 (546)
+.+|+||-. .. .....+.+.|++.|++|.......+... .+ ......+|+||+= + .|| +.+++.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----G-GDGT~l~~~~~~ 77 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----G-GDGTVLAAARHL 77 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----C-CcHHHHHHHHHh
Confidence 456777632 11 3455667778888999775443322111 11 1100357888872 4 576 3455555
Q ss_pred C--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHH
Q 009017 87 K--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS-EDKLRNLWQHVVH 133 (546)
Q Consensus 87 r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~-~eeL~~~I~~vlr 133 (546)
. ++||+.+.. .|-.+||.-... .++ ...|+++++
T Consensus 78 ~~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 78 APHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred ccCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHc
Confidence 4 688887753 245678885421 222 444554443
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.11 E-value=1.7e+02 Score=32.33 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC--HHHHHHH-hC---
Q 009017 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDG--SFKFLET-AK--- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d--Glellr~-Lr--- 87 (546)
+.+|.+|+-|+.. .+.+..+-+..|+.+..+.+..+....+... ..+|+||+|.---...+ .++.+.. +.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 4689999988742 2334444455677777777777766666542 35899999964111011 1222222 22
Q ss_pred -C-CcEEEEecCCChHHHHHHH----HcCCCEEEeCCCC
Q 009017 88 -D-LPTIITSNIHCLSTMMKCI----ALGAVEFLRKPLS 120 (546)
Q Consensus 88 -~-iPIIvLSs~~d~e~i~~Al----~aGAdDYL~KP~~ 120 (546)
. -.++++++......+.+++ ..+.+.+|.--++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 1 2266677765555544433 3355556544444
No 270
>PLN02335 anthranilate synthase
Probab=45.04 E-value=23 Score=35.37 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=35.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlD 70 (546)
..+|||||....+...|.+.|++.|+.+.++......++.+.. ..||.||+-
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVis 69 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLIS 69 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEc
Confidence 3589999977778888999999999887765542111233333 357777774
No 271
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.78 E-value=1.4e+02 Score=31.91 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc-EEEEe-cCCChHHHHHHHHcCCCEEE
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP-TIITS-NIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP-IIvLS-s~~d~e~i~~Al~aGAdDYL 115 (546)
+++.+++... -.+|+|.+|...+....-.+++++|+ ..| +.++. .-.+.+.+..++++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 4455555541 13599999998876223456788887 333 33333 34578899999999998865
No 272
>PLN02275 transferase, transferring glycosyl groups
Probab=44.63 E-value=3.1e+02 Score=28.85 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=66.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEE---CCHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHhC-CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTF---YNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~a---ss~~eALe~L~~~~~~pDLVIlDl-~mp~~~dGlellr~Lr-~iP 90 (546)
.++++||.|-+. ++.+++.+++.|.. +..+ -..++.-..+.. .|+.++=. ...+..-+..+++.+. .+|
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA~G~P 335 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFGCGLP 335 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHHCCCC
Confidence 478888888764 56788888877654 4432 245666666666 57766411 1111022556777776 899
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
||... ... ..+.++.|..+|+.. +.++|.++|.++
T Consensus 336 VVa~~-~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 336 VCAVS-YSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred EEEec-CCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 98743 222 445677888999986 578888877654
No 273
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=44.54 E-value=99 Score=38.62 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=68.1
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--
Q 009017 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (546)
Q Consensus 18 ~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~as---s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr-- 87 (546)
-+|++. |-+..=...+.-+|+..||+|+-.. ..++.++.+.+ ..+|+|-+...|...+.. .++++.|+
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467766 5555555667777888999998433 57888888888 789999999887652333 24555565
Q ss_pred --CCcEEEEecCCChHHHHH---HHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 88 --DLPTIITSNIHCLSTMMK---CIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 --~iPIIvLSs~~d~e~i~~---Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+++|++=-+..+.+.... ....||+.|-. +..+-...+++++
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~---dA~~av~~~~~l~ 857 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL---DASRAVTVMDTLM 857 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEec---CHHHHHHHHHHHh
Confidence 466665444334444322 12338877765 3344444444444
No 274
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=44.34 E-value=1.9e+02 Score=28.46 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=40.8
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.|++|+-... + .-|..+++.+. .+|||+ +..... .+.+.. .+++..+-+.++|...|..++..
T Consensus 269 adi~v~ps~~-e-~~~~~~~Ea~a~g~PvI~-~~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-E-GFPNVLLEAMACGLPVVA-TDVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-c-cCCcHHHHHHhcCCCEEE-cCCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4676665443 3 34667788776 788876 333322 222222 56888999999999998887653
No 275
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.13 E-value=2.3e+02 Score=27.41 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHhhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHhCC------C-cEEEEec
Q 009017 34 KFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAKD------L-PTIITSN 96 (546)
Q Consensus 34 ~~~Le~~Gy~V~-~a--ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-------lellr~Lr~------i-PIIvLSs 96 (546)
.+.++..|..+. .+ .+..+.++.+.. ..|.|+++..-++ ..| ++.+++++. + ++|++.+
T Consensus 102 ~~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g-~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T PRK05581 102 LQLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPG-FGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG 177 (220)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCC-CCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 333444565543 23 233455554443 3577766654344 332 334444431 2 4555666
Q ss_pred CCChHHHHHHHHcCCCEEEeC
Q 009017 97 IHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 97 ~~d~e~i~~Al~aGAdDYL~K 117 (546)
--+.+.+.++++.|++.++.-
T Consensus 178 GI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 178 GINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 667788888999999987654
No 276
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.84 E-value=1.5e+02 Score=30.93 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCC--CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---C
Q 009017 19 RVLLLDQDSSAAAELKFKLE----AMD--YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le----~~G--y~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~ 88 (546)
.|||-|++-.+...+...++ ..+ ..+ +.+.+.+++.+.+.. .+|.|.+|- | |.+.++++. .
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-~-----~~e~l~~~~~~~~ 230 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-R-----TPDEIREFVKLVP 230 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-C-----CHHHHHHHHHhcC
Confidence 58888887666654555443 234 233 488999999888754 689999983 2 233344332 2
Q ss_pred CcE-EEEecCCChHHHHHHHHcCCCEEEe
Q 009017 89 LPT-IITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 89 iPI-IvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.|+ |+.++--+.+.+.+..+.|++.+-+
T Consensus 231 ~~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 231 SAIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 222 3345566888899999999987754
No 277
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=43.78 E-value=3.2e+02 Score=32.70 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=74.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh----CCCEEE-EECCHHHHHHH----------------hhcCCCCeeEEEEecCCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA----MDYIVS-TFYNENEALSA----------------FSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~----~Gy~V~-~ass~~eALe~----------------L~~~~~~pDLVIlDl~mp~ 75 (546)
..+|+|..-++.....+..++++ .|+++. .+.++.|+++. +.. ..+|++++|.+---
T Consensus 237 ~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~~VvD~QCi~ 314 (781)
T PRK00941 237 KPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDVIVVDEQCVR 314 (781)
T ss_pred CcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcEEEEecccCc
Confidence 57899999999999999998763 377766 77777777633 234 67899999998654
Q ss_pred CCCHHHHHHHhCCCcEEEEec----------CCChHHHHHHHHcCC-C-EEEeCCCCHHHHHHHHHHHHHH
Q 009017 76 TDGSFKFLETAKDLPTIITSN----------IHCLSTMMKCIALGA-V-EFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 76 ~~dGlellr~Lr~iPIIvLSs----------~~d~e~i~~Al~aGA-d-DYL~KP~~~eeL~~~I~~vlrr 134 (546)
-+-.++.+.. ..++|-+|. ..+.+.+.+.+..|- . .+|.-|....|+.-++...+..
T Consensus 315 -p~L~eiA~~y-gt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~ 383 (781)
T PRK00941 315 -TDILEEAKKL-GIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAP 383 (781)
T ss_pred -ccHHHHHHHh-CCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhh
Confidence 3333444332 455555543 456666666665554 3 4566666667776655544443
No 278
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=43.47 E-value=60 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=36.8
Q ss_pred CCCEEEEEeCCHHH---------HHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 16 KGLRVLLLDQDSSA---------AAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 16 ~~~rILIVDDD~~~---------~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
..+.|.|||.|... .+.+.+.|+.. .|.+.. .+.++|.+.+.. +.++.+|+
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~--g~~~~~iv 102 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD--GKYYMVIT 102 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc--CcEEEEEE
Confidence 35789999988765 45666667654 355443 488999999998 77887765
No 279
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=43.46 E-value=3.1e+02 Score=28.75 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=52.3
Q ss_pred CEEEEE-eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEe
Q 009017 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (546)
Q Consensus 18 ~rILIV-DDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLS 95 (546)
.+++++ .++....+.+++..+..+-.|....-.++..+++.. -|++|.. ..|+.+++.+. .+|+|+..
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~------~gg~t~~EA~a~g~PvI~~~ 300 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK------PGGITLSEAAALGVPVILYK 300 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC------CCchHHHHHHHhCCCEEECC
Confidence 454444 444444555555554433223333323333344433 4666642 23666777765 89987654
Q ss_pred cCC--ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 96 NIH--CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 96 s~~--d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
... ..+......+.|+. ....+.++|...|..++.
T Consensus 301 ~~~g~~~~n~~~~~~~G~~---~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 301 PVPGQEKENAMYFERKGAA---VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCcchHHHHHHHhCCcE---EEECCHHHHHHHHHHHHC
Confidence 222 12222223345542 234678888888877764
No 280
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=43.39 E-value=2.7e+02 Score=30.44 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=60.4
Q ss_pred CEEEEEeCC-HHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 18 LRVLLLDQD-SSAAAELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD-~~~~~~L~~~Le~~Gy~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
.+++|+.+- +...+.+..+.++.+-.+.. .-+.+++...+.. .|++|+-.. -+ .-|+..++.+. .+|+|+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~-~E-~~gl~~lEAma~G~pvI~ 394 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAG----ADFILMPSR-FE-PCGLTQLYAMRYGTVPIV 394 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh----CCEEEeCCC-cC-CcHHHHHHHHHCCCCeEE
Confidence 566666554 33445555555444433332 2233333344443 477766432 23 45677777776 677764
Q ss_pred EecCCChHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALG------AVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aG------AdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+..... .+.+..| ..+|+..|.+.++|..+|.+++.
T Consensus 395 -s~~gg~---~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 395 -RRTGGL---ADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred -ccCCCc---cceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 332221 2223344 78999999999999999888775
No 281
>PRK05993 short chain dehydrogenase; Provisional
Probab=43.36 E-value=70 Score=32.08 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=41.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
++.+|||..-...+...+...|.+.|++|+.+....+.++.+.. ...+++.+|+.-
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--~~~~~~~~Dl~d 58 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--EGLEAFQLDYAE 58 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--CCceEEEccCCC
Confidence 34578999998899999999998899998865544555555555 456777777753
No 282
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.83 E-value=57 Score=31.75 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=35.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|+|+|||-.......+.+.|+..|+++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 58999999988889999999999999888775432 22 4788777
No 283
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.76 E-value=1.1e+02 Score=31.20 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHH-HcCCCEEEe
Q 009017 50 ENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCI-ALGAVEFLR 116 (546)
Q Consensus 50 ~~eALe~L~~~~~~p-DLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al-~aGAdDYL~ 116 (546)
..+.++.+.+ ..+ .+++.|+.-.+.+.| ++++++++ .+|||.-.+-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4566666655 334 488888764432333 56777776 79999888888999999998 799987754
No 284
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.63 E-value=74 Score=32.67 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=39.8
Q ss_pred CHHHHHHHhC----CCcEEEEecC------CChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 78 GSFKFLETAK----DLPTIITSNI------HCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 78 dGlellr~Lr----~iPIIvLSs~------~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
+.+++++++| ++|+|+||=. .-.....+|.++|+++.|.-.+..++....+..
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~ 137 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAA 137 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH
Confidence 3577777776 5899988843 344568889999999999988888776655443
No 285
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.62 E-value=2.8e+02 Score=30.09 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=44.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCC-------CCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTT-------SNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~m-------p~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+..+.+.+ ...|+|.++... .. .+...+.+.++ ++|||. ..-.+.+.+.+++++|||.++.
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~-~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKE-GEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCc-CCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45666677777 678999997532 11 13455555555 688776 4556778888999999999865
No 286
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=42.55 E-value=1.3e+02 Score=31.69 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEe
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~--~a---ss~~eALe~L~~~~~~pDLVIlD 70 (546)
-|.+.-+||=+|.|+...+.-...-++.|..+. .+ .-.+...+++.. ..|||+++=
T Consensus 101 ~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViT 161 (287)
T PF05582_consen 101 YFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--YRPDILVIT 161 (287)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--cCCCEEEEe
Confidence 344557999999999999888888888876654 22 233445667777 789988873
No 287
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.49 E-value=2.6e+02 Score=30.83 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCEEEEEeC---CHHHHHHHHHHHhh-C-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC--------C--CCH
Q 009017 17 GLRVLLLDQ---DSSAAAELKFKLEA-M-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN--------T--DGS 79 (546)
Q Consensus 17 ~~rILIVDD---D~~~~~~L~~~Le~-~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~--------~--~dG 79 (546)
+..|++||- +......+...+++ . +..++ -+.+.++|..++.. ..|.|.+.+.-.. . ...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCCh
Confidence 456777764 22222222223333 2 23333 47788888888775 4788886542110 0 012
Q ss_pred HHHH---HHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFL---ETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lell---r~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+..+ ..+. .+|||+=.+-.....+.+|+.+||+.++.=
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3333 3332 689998888889999999999999988764
No 288
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=41.97 E-value=1.9e+02 Score=26.37 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCeeEEEEecCCCCCCCH-------HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 62 ENFHVAIVEVTTSNTDGS-------FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 62 ~~pDLVIlDl~mp~~~dG-------lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
...|.|.++...+. ..+ ...+..++ .+||++..+-.+.+.+.++++.||+.+..
T Consensus 135 ~g~d~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGG-GGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCC-CCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 35788888776664 221 13333333 78999888777778899999999988764
No 289
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=41.89 E-value=1.7e+02 Score=28.71 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
++..+.+.. .|++|+-... + .-|..+++.+. .+|+|+. .... ..+.+..+..+|+.++.+.++|..+|.
T Consensus 270 ~~~~~~~~~----ad~~i~~~~~-~-~~~~~~~Ea~~~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~ 339 (377)
T cd03798 270 EEVPAYYAA----ADVFVLPSLR-E-GFGLVLLEAMACGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAIL 339 (377)
T ss_pred HHHHHHHHh----cCeeecchhh-c-cCChHHHHHHhcCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHH
Confidence 444444443 3555543322 3 34566777776 7888753 3322 334566777789999999999999988
Q ss_pred HHHHH
Q 009017 130 HVVHK 134 (546)
Q Consensus 130 ~vlrr 134 (546)
.++..
T Consensus 340 ~~~~~ 344 (377)
T cd03798 340 RLLAD 344 (377)
T ss_pred HHhcC
Confidence 87754
No 290
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.62 E-value=2.7e+02 Score=29.24 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=57.5
Q ss_pred CEEEEEe--CCHH---HHHHHHHHHhhCCCEEEEECCHHH---HH------------HHhhcCCCCeeEEEEecCCCCCC
Q 009017 18 LRVLLLD--QDSS---AAAELKFKLEAMDYIVSTFYNENE---AL------------SAFSDKPENFHVAIVEVTTSNTD 77 (546)
Q Consensus 18 ~rILIVD--DD~~---~~~~L~~~Le~~Gy~V~~ass~~e---AL------------e~L~~~~~~pDLVIlDl~mp~~~ 77 (546)
.+|+|+- +.+. ....+...|.+.|+.|........ ++ ..+. ..+|+||+ + + .
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~D~vi~---l-G-G 77 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG---QYCDLVAV---L-G-G 77 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC---cCCCEEEE---E-C-C
Confidence 4587772 2222 345666777788988775432111 11 1111 24677776 2 3 5
Q ss_pred CH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 78 GS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 78 dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|| +..++.+. ++||+-+- .|=.+||.- ++.+++...|..+++..
T Consensus 78 DGT~L~aa~~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 78 DGTFLSVAREIAPRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGK 125 (296)
T ss_pred cHHHHHHHHHhcccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCC
Confidence 77 33444443 68988664 366889985 88899998888877543
No 291
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=41.57 E-value=52 Score=31.31 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=32.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|||+|........+.+.|++.|+++............... ..+|.||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEE
Confidence 6899999899999999999999887755443222211122 34787666
No 292
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=41.49 E-value=1.3e+02 Score=30.50 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 30 AAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
...+.+.+.+.||.+..+.+ . .+.++.+.. ..+|-||+--.... ....++++....+|+|++..
T Consensus 75 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~-~~~~~~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 75 VRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQ--KRVDGLLLLCTETH-QPSREIMQRYPSVPTVMMDW 144 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCcc-hhhHHHHHhcCCCCEEEECC
Confidence 34556667778999775432 2 244555556 56887776422222 22334444445789998853
No 293
>PLN02591 tryptophan synthase
Probab=41.46 E-value=85 Score=32.18 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=41.1
Q ss_pred CHHHHHHHhC---CCcEEEEecCC------ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 78 GSFKFLETAK---DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 78 dGlellr~Lr---~iPIIvLSs~~------d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
+.+++++++| ++|+|+||=.+ -.....+|.++|+++.|.-.+..+|....+..+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4678888887 58988887543 345678889999999999999888777654443
No 294
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=41.15 E-value=1.2e+02 Score=31.28 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCCEEEEEe--------CCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecC
Q 009017 16 KGLRVLLLD--------QDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 16 ~~~rILIVD--------DD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
.+++|.|+= ..-.....+.+.|++.||+++.+. +..+.+..+.. ..+|+|+.-++
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~--~~~d~vf~~lh 65 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLE--LKPDKCFVALH 65 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhc--cCCCEEEEeCC
Confidence 356777772 222455678888888999988665 44566666766 57999988665
No 295
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=40.99 E-value=3.6e+02 Score=26.81 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=48.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~ 127 (546)
+..+..+.+.. .|++++-....+ .-|+.+++.+. .+|||..-. .. ..+.+..|..+|+..+ .++|.++
T Consensus 233 ~~~~~~~~~~~----~d~~v~ps~~~E-~~~~~~lEAma~G~PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 233 GGAEKAELLGN----ARALLFPILWEE-PFGLVMIEAMACGTPVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred CHHHHHHHHHh----CcEEEeCCcccC-CcchHHHHHHhcCCCEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHHH
Confidence 44555666665 477777544444 56788888887 788885432 22 2345667788999987 8888888
Q ss_pred HHHHH
Q 009017 128 WQHVV 132 (546)
Q Consensus 128 I~~vl 132 (546)
|..+.
T Consensus 302 l~~l~ 306 (335)
T cd03802 302 VARAD 306 (335)
T ss_pred HHHHh
Confidence 87653
No 296
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.81 E-value=2.2e+02 Score=27.74 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=33.5
Q ss_pred EEEEecCCCCCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 66 VAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 66 LVIlDl~mp~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
|-++|...-- ...++.++.++ ++||++...-.+...+..++++||+..++
T Consensus 48 l~v~~~~~~~-~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 48 ISVLTEPKYF-QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred EEEEeCcccc-CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 3344443332 33566666665 79999765445666888999999999973
No 297
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.66 E-value=2.5e+02 Score=29.43 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=57.2
Q ss_pred CEEEEEeC--CHH---HHHHHHHHHhhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEecCCCCCCCH--HHHH
Q 009017 18 LRVLLLDQ--DSS---AAAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKFL 83 (546)
Q Consensus 18 ~rILIVDD--D~~---~~~~L~~~Le~~Gy~V~~ass~~eALe~-------L~~~~~~pDLVIlDl~mp~~~dG--lell 83 (546)
.+|+|+-. .+. ....+..+|++.|+++.........+.. +......+|+||+ + + .|| +..+
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---l-G-GDGT~L~aa 80 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---V-G-GDGNMLGAA 80 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---E-C-CcHHHHHHH
Confidence 45887732 222 3456677777889988765543332210 0110024687776 2 3 577 3344
Q ss_pred HHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 84 ETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 84 r~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+.+. ++||+-+-. |=.+||. .++.+++...+++++...
T Consensus 81 ~~~~~~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 81 RVLARYDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHhcCCCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 4443 578775532 5567776 578899988888776543
No 298
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.56 E-value=46 Score=33.39 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCcEEEEec------CCChHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 88 DLPTIITSN------IHCLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 88 ~iPIIvLSs------~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
.+|||+|+= +.+...+..+.++||++||.-.+.++|-..
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 489999874 457788899999999999999888887654
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.55 E-value=3e+02 Score=30.12 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCEEEEEeCCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh----C--
Q 009017 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----K-- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~---~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L----r-- 87 (546)
+.+|.+|+-|.... +.++.+.+..|+.+..+.+..+....+... ..+|+||+|.---...+... +.++ .
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMK-LAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHH-HHHHHHHHHhc
Confidence 46899888886322 334444455677777777777666655442 46899999974211012222 2222 2
Q ss_pred --C-CcEEEEecCCChHHHHHHHH----cCCCEEEeCCCCH
Q 009017 88 --D-LPTIITSNIHCLSTMMKCIA----LGAVEFLRKPLSE 121 (546)
Q Consensus 88 --~-iPIIvLSs~~d~e~i~~Al~----aGAdDYL~KP~~~ 121 (546)
. -.++++++......+.+.+. .|.+.+|.--+|.
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDe 324 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDE 324 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccC
Confidence 2 24667777666555554443 4567776654553
No 300
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.53 E-value=69 Score=32.66 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHH
Q 009017 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKC 106 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~A 106 (546)
.-..|.++.++.|....+..-..++++.+.+ +++-++=+.-.+ .+-+.+++.+. ..|||+-|+-.+.+.+.+|
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~d-l~n~~lL~~~A~tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGD-LTNLPLLEYIAKTGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGG-TT-HHHHHHHHTT-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEecccc-ccCHHHHHHHHHhCCcEEEECCCCCHHHHHHH
Confidence 3345677777889886644445667777765 333344444445 66789999986 7999999998777766655
Q ss_pred H
Q 009017 107 I 107 (546)
Q Consensus 107 l 107 (546)
+
T Consensus 132 v 132 (241)
T PF03102_consen 132 V 132 (241)
T ss_dssp H
T ss_pred H
Confidence 4
No 301
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=40.09 E-value=1.6e+02 Score=28.45 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ .. ++++.+.. ..+|.||+....+. ..++++.+. .+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~~ipvV~~~~ 87 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA---TSPALDLLDAERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC---chHHHHHHhhCCCCEEEEec
Confidence 345566677788999876532 22 45555555 57898888643322 234556654 689888854
No 302
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=40.00 E-value=2.2e+02 Score=28.99 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCCEEEE-------ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCC
Q 009017 31 AELKFKLEAMDYIVST-------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHC 99 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~~-------ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d 99 (546)
..++..+++.|.+|+. ..+....+..+.. ..+|+|++-.. . .++..+++.++ ..+++..+...+
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~--~-~~~~~~~~~~~~~G~~~~~~~~~~~~~ 229 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY--P-ETGSGILRSAYEQGLFDKFLLTDGMKS 229 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc--c-chHHHHHHHHHHcCCCCceEeeccccC
Confidence 4566677777887652 2356677777777 67999988643 3 35777777775 355655444334
Q ss_pred hH
Q 009017 100 LS 101 (546)
Q Consensus 100 ~e 101 (546)
.+
T Consensus 230 ~~ 231 (312)
T cd06346 230 DS 231 (312)
T ss_pred hH
Confidence 33
No 303
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=40.00 E-value=2.7e+02 Score=29.44 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHhhCC--CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC-----------CC
Q 009017 17 GLRVLLLDQ----DSSAAAELKFKLEAMD--YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN-----------TD 77 (546)
Q Consensus 17 ~~rILIVDD----D~~~~~~L~~~Le~~G--y~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~-----------~~ 77 (546)
+..+++||- .....+.++ .+++.+ ..|. .+.+.++|..++.. ..|.|++.+. ++ ..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~-~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~g-~G~~~~t~~~~g~g~ 180 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIK-FIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGIG-PGSICTTRIVTGVGV 180 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHH-HHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECCC-CCcCcccceeCCCCC
Confidence 456777763 222333333 333332 3443 46677888777665 5788887421 10 01
Q ss_pred CHHHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 78 GSFKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 78 dGlellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.-+.++..+ + .+|||.--+-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 112333222 2 58888766777889999999999998876
No 304
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=39.91 E-value=1.5e+02 Score=29.28 Aligned_cols=90 Identities=10% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC--cEE-EEecCCChHHHHHHHHc
Q 009017 35 FKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL--PTI-ITSNIHCLSTMMKCIAL 109 (546)
Q Consensus 35 ~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i--PII-vLSs~~d~e~i~~Al~a 109 (546)
..|+..+.- |+...+.+++++.++.- ..-.+=++.+.+.. .++++.++.|+ .. +++ =.-.-.+.+.+..|+++
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 344444433 33455555555544320 00122244444544 55677777665 22 222 12223467788899999
Q ss_pred CCCEEEeCCCCHHHHHHH
Q 009017 110 GAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 110 GAdDYL~KP~~~eeL~~~ 127 (546)
||+ |+.-|....++...
T Consensus 83 GA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 83 GGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred CCC-EEECCCCCHHHHHH
Confidence 985 55557655555543
No 305
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.88 E-value=1.4e+02 Score=29.09 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
.+...+...+++.||.+..+.. ..++++.+.. ..+|.||+....++ . ..++.+. .+|+|++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~-~~~~~~~~~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT---S-AQRAALRRTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC---h-HHHHHHhcCCCCEEEEec
Confidence 3445666777788999775443 2245666666 57898877544333 2 3455554 789998854
No 306
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=39.73 E-value=3.3e+02 Score=28.19 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=63.6
Q ss_pred CCEEEEEeCCH-------HHHHHHHHHHhh-CCC--EEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH
Q 009017 17 GLRVLLLDQDS-------SAAAELKFKLEA-MDY--IVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (546)
Q Consensus 17 ~~rILIVDDD~-------~~~~~L~~~Le~-~Gy--~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr 84 (546)
..+++|+.+.. ...+.+...+++ .|. .|.. .-+.++....+.. .|++|+-... + .-|+.+++
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E-~~g~~~lE 318 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-E-HFGIVPLE 318 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-C-CCCchHHH
Confidence 46677776532 233556666665 443 2433 2234444555554 5777764332 3 34677788
Q ss_pred HhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 85 TAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 85 ~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+. .+|||..-.... .+.+..|..+|+..+ +.+++.+.|..++.
T Consensus 319 Ama~G~PvI~s~~~~~----~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 319 AMYAGKPVIACNSGGP----LETVVDGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred HHHcCCCEEEECCCCc----HHHhccCCceEEeCC-CHHHHHHHHHHHHh
Confidence 776 889886533222 234556778888876 89999988877664
No 307
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.65 E-value=1.5e+02 Score=31.91 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=41.3
Q ss_pred CEEEEEeCCHHH-----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 009017 18 LRVLLLDQDSSA-----AAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (546)
Q Consensus 18 ~rILIVDDD~~~-----~~~L~~~Le~~Gy~V~~as---------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell 83 (546)
.|+|||-|.... .+.+.+.|+..|+++..+. +..++++.++. ..+|+||- +.+ ..-+++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---iGG-GS~iD~a 102 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE--EKVDFILA---VGG-GSVIDSA 102 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH--cCCCEEEE---eCC-hHHHHHH
Confidence 589988776443 3568888888888776554 34567777777 68998774 234 4445555
Q ss_pred HH
Q 009017 84 ET 85 (546)
Q Consensus 84 r~ 85 (546)
+.
T Consensus 103 K~ 104 (382)
T cd08187 103 KA 104 (382)
T ss_pred HH
Confidence 54
No 308
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.61 E-value=67 Score=31.62 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
+|+|.|||--.-....+...|++.|+ ++....+.+++ . .+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l----~----~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV----A----AADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh----c----CCCEEEE
Confidence 36899999888778889999999998 77777776652 2 4788887
No 309
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.50 E-value=2.9e+02 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCEEEeCCCCHHHHHHHHHHHHH
Q 009017 111 AVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 111 AdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+..++.+..+.++|.+.+..++.
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhc
Confidence 35577788888888888877765
No 310
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=39.45 E-value=2e+02 Score=32.38 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+|||.=.+-....++.+|+.+||+..+.=
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 577776667778889999999999988764
No 311
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.44 E-value=1.4e+02 Score=30.15 Aligned_cols=66 Identities=5% Similarity=0.055 Sum_probs=45.9
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~p-DLVIlDl~mp~~~dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+.++.+.. ..+ .+|++|+.-.+++.| +++++.++ ..++|+--+-.+.+++.++.+.|+++.+.
T Consensus 147 ~~~e~~~~l~~--~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNE--LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHh--cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45566676666 333 799999987764455 56777775 33455544456778888888999998876
No 312
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=39.43 E-value=2.8e+02 Score=34.30 Aligned_cols=105 Identities=13% Similarity=0.050 Sum_probs=60.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCE-------------EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHH
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYI-------------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF 82 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~-------------V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlel 82 (546)
+.+|+|+.--..-+ .+.+.|.+ .+++ |..++...+..+.+.........+-+|+. |--++
T Consensus 569 ~~rIlVLGAG~VG~-~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~-----D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCR-PAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS-----DSESL 642 (1042)
T ss_pred CCcEEEECCCHHHH-HHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC-----CHHHH
Confidence 56899999865554 44455543 3444 66666433333433331012456777763 33355
Q ss_pred HHHhCCCcE--EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 83 LETAKDLPT--IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 83 lr~Lr~iPI--IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.+.+..+-+ +++-.......+..|+++|.+-+..| +..++..+..
T Consensus 643 ~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~ 689 (1042)
T PLN02819 643 LKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALD 689 (1042)
T ss_pred HHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHH
Confidence 555564333 33333445778899999999877777 6666655433
No 313
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.42 E-value=2.5e+02 Score=29.67 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=58.1
Q ss_pred CEEEEEe--CCH---HHHHHHHHHHhhCCCEEEEECCHHHHHHHh----------------hcCCCCeeEEEEecCCCCC
Q 009017 18 LRVLLLD--QDS---SAAAELKFKLEAMDYIVSTFYNENEALSAF----------------SDKPENFHVAIVEVTTSNT 76 (546)
Q Consensus 18 ~rILIVD--DD~---~~~~~L~~~Le~~Gy~V~~ass~~eALe~L----------------~~~~~~pDLVIlDl~mp~~ 76 (546)
.+|.|+- +.+ .....+...|.+.|+.+....+..+.+..- ......+|+||+= +
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~i----G- 76 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVL----G- 76 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEE----e-
Confidence 3577662 222 345667777888899987655433222100 0000236777762 3
Q ss_pred CCH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 77 DGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 77 ~dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.|| +..++.+. ++||+-+. .|-.+||.- ++.+++...|.++++..
T Consensus 77 GDGTlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 77 GDGTVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcHHHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 577 33344433 68888664 266778875 67889988888877653
No 314
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.30 E-value=2e+02 Score=29.68 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=50.2
Q ss_pred hCCCEEEEECCHH--------HHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHh-C--CCcEEEEecCCChHHHHHH
Q 009017 39 AMDYIVSTFYNEN--------EALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K--DLPTIITSNIHCLSTMMKC 106 (546)
Q Consensus 39 ~~Gy~V~~ass~~--------eALe-~L~~~~~~pDLVIlDl~mp~~~dGlellr~L-r--~iPIIvLSs~~d~e~i~~A 106 (546)
+.+..+.++.++. ++.. .+.. ..||++|+=-=.+. ..|-.-.|.+ + ++|.|+++........ ++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a-~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~ 104 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPA-APGPKKAREILKAAGIPCIVIGDAPGKKVK-DA 104 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCC-CCCchHHHHHHHhcCCCEEEEcCCCccchH-HH
Confidence 3478888777652 2233 3345 67998887554444 4555555544 4 7899999987665544 77
Q ss_pred HHcCCCEEEeCCCC
Q 009017 107 IALGAVEFLRKPLS 120 (546)
Q Consensus 107 l~aGAdDYL~KP~~ 120 (546)
++..-.+||.-+.+
T Consensus 105 l~~~g~GYIivk~D 118 (277)
T PRK00994 105 MEEQGLGYIIVKAD 118 (277)
T ss_pred HHhcCCcEEEEecC
Confidence 77777788776655
No 315
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.27 E-value=1.7e+02 Score=30.14 Aligned_cols=84 Identities=18% Similarity=0.070 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHh----C-CCcEEEEecCCChHHH
Q 009017 31 AELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETA----K-DLPTIITSNIHCLSTM 103 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~L----r-~iPIIvLSs~~d~e~i 103 (546)
..+...-.+.|.++ +.+.+.+|+...+.. ..++|=++..--.... .++....| . ++.+|.-++-.+.+.+
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHH
Confidence 44555556789985 489999998887765 4677766654322111 12233333 2 5556667777889999
Q ss_pred HHHHHcCCCEEEeC
Q 009017 104 MKCIALGAVEFLRK 117 (546)
Q Consensus 104 ~~Al~aGAdDYL~K 117 (546)
....+.|++++|+-
T Consensus 225 ~~l~~~G~davLVG 238 (254)
T PF00218_consen 225 RRLARAGADAVLVG 238 (254)
T ss_dssp HHHCTTT-SEEEES
T ss_pred HHHHHCCCCEEEEC
Confidence 99999999999975
No 316
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=39.16 E-value=1.3e+02 Score=29.98 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=49.9
Q ss_pred ECCHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 47 FYNENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pD-LVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+..+..+.+.. ..+| ++++|+.-.+. ..-++++++++ .+||++--+-.+.+.+.+++..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 4477777777776 4454 88888874321 12356777776 589999888889999999999998877654
No 317
>PRK06849 hypothetical protein; Provisional
Probab=39.12 E-value=3e+02 Score=29.29 Aligned_cols=41 Identities=22% Similarity=0.067 Sum_probs=32.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHH
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALS 55 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe 55 (546)
+.+++|||........-.+.+.|.+.|++|+.+++....+.
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS 42 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 44689999999988788888899999999987776554443
No 318
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.09 E-value=3.3e+02 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
++++++++ ++|||...+-.+.+.+.+++.+||+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 56666665 799999999999999999999998654
No 319
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.08 E-value=1.5e+02 Score=30.88 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=55.0
Q ss_pred EEEEeCCHHHHHHHHHHHh---hC--CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 20 VLLLDQDSSAAAELKFKLE---AM--DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le---~~--Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
|||-|.+-.+...+...++ +. +.. .+.+.+.+|+.+.+.. .+|+|.+|-.-++ +--++++.++ ++|++
T Consensus 163 ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~~---gaD~I~LD~~~~e--~l~~~v~~~~~~i~le 237 (277)
T PRK05742 163 FLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALAA---GADIVMLDELSLD--DMREAVRLTAGRAKLE 237 (277)
T ss_pred EEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCcEE
Confidence 6666666444433333332 11 222 3478999999998865 5899999843222 1122333343 56655
Q ss_pred EEecCCChHHHHHHHHcCCCEEEe
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+ ++--+.+.+.+..+.|++.+-+
T Consensus 238 A-sGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 238 A-SGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred E-ECCCCHHHHHHHHHcCCCEEEE
Confidence 4 4556788888899999987654
No 320
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=38.99 E-value=2e+02 Score=29.70 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred EEEEeCCHHHHHHH--HHHHh---h-CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 20 VLLLDQDSSAAAEL--KFKLE---A-MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 20 ILIVDDD~~~~~~L--~~~Le---~-~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
|||-|++-.+...+ .+.++ + .+ .-.+.+.+.+|+.+.+.. ..|+|.+|-..|. +--++++.++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~--~l~~~~~~~~~~~~ 229 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE--ELAELVPKLRSLAP 229 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHhccCC
Confidence 78887775443221 22222 1 22 223478899999988754 6899999955443 2223445454
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
++|++++ +--+.+.+.+..+.|++.+..
T Consensus 230 ~i~i~As-GGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 230 PVLLAAA-GGINIENAAAYAAAGADILVT 257 (272)
T ss_pred CceEEEE-CCCCHHHHHHHHHcCCcEEEE
Confidence 4665544 455788899999999998854
No 321
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=38.89 E-value=72 Score=31.23 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=34.2
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hCCCEEEEECCHHHHHH-HhhcCCCCeeEEEEecCCC
Q 009017 19 RVLLLDQD---------SSAAAELKFKLE-AMDYIVSTFYNENEALS-AFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 19 rILIVDDD---------~~~~~~L~~~Le-~~Gy~V~~ass~~eALe-~L~~~~~~pDLVIlDl~mp 74 (546)
||||+... +.....|..+|+ ..+|+|+...+....-. .|. .+|+||+.....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~----~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLK----GYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHC----T-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhc----CCCEEEEECCCC
Confidence 57888766 256788899998 67999988777443222 232 589999987764
No 322
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=38.66 E-value=2.8e+02 Score=28.06 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=34.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
.+|..+|-++...+..+.-++..+.++.. .+..+.+..... ..||+||+|-
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECC
Confidence 57999999999998888888777765443 333333322122 4699999984
No 323
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=38.53 E-value=39 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=26.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
|+|||+|....+...+...|++.|+.+..+..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRN 32 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEEC
Confidence 47999999988888899999999988775543
No 324
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=38.52 E-value=2.7e+02 Score=24.80 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=55.8
Q ss_pred EEEEeC-CHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 20 VLLLDQ-DSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 20 ILIVDD-D~~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
|||.+. ++... +.|++ ||+|..+. +.++..+.+.. +|++|+...- . -.-++++.+..+.+|...+
T Consensus 1 ili~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~~~l~~----~d~ii~~~~~-~--~~~~~l~~~~~Lk~I~~~~ 68 (133)
T PF00389_consen 1 ILITDPLPDEEI----ERLEE-GFEVEFCDSPSEEELAERLKD----ADAIIVGSGT-P--LTAEVLEAAPNLKLISTAG 68 (133)
T ss_dssp EEESSS-SHHHH----HHHHH-TSEEEEESSSSHHHHHHHHTT----ESEEEESTTS-T--BSHHHHHHHTT-SEEEESS
T ss_pred eEEeccCCHHHH----HHHHC-CceEEEeCCCCHHHHHHHhCC----CeEEEEcCCC-C--cCHHHHhccceeEEEEEcc
Confidence 566664 44444 44444 77777655 45555555554 8999985432 1 1357788888888887765
Q ss_pred CC-ChHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 97 IH-CLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 97 ~~-d~e~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
.. |.-....|.+.|+.=.-..........+
T Consensus 69 ~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE 99 (133)
T PF00389_consen 69 AGVDNIDLEAAKERGIPVTNVPGYNAEAVAE 99 (133)
T ss_dssp SSCTTB-HHHHHHTTSEEEE-TTTTHHHHHH
T ss_pred cccCcccHHHHhhCeEEEEEeCCcCCcchhc
Confidence 43 3335667778887655555566555444
No 325
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.35 E-value=2.2e+02 Score=29.35 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHH---h-hCC--CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHhC-CC
Q 009017 19 RVLLLDQDSSAAAELKFKL---E-AMD--YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK-DL 89 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~L---e-~~G--y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~Lr-~i 89 (546)
.|||.|++-.+...+...+ + ..+ .. .+.+.+.+|+.+.+.. ..|+|.+|-.-++ .+. +++.++ .+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~~e---~l~~~~~~~~~~i 227 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMSPE---ELREAVALLKGRV 227 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcCHH---HHHHHHHHcCCCC
Confidence 4788888766553333222 2 223 22 3589999999998865 5899999854322 332 222333 47
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
|++++ +--+.+.+.+..+.|++.+-
T Consensus 228 pi~Ai-GGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 228 LLEAS-GGITLENIRAYAETGVDYIS 252 (268)
T ss_pred cEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 76654 45578888899999998764
No 326
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.30 E-value=1.7e+02 Score=25.23 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=43.9
Q ss_pred CCEEEEEeCCHH----HHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---C
Q 009017 17 GLRVLLLDQDSS----AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (546)
Q Consensus 17 ~~rILIVDDD~~----~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~ 88 (546)
..+|||+=.... +...+++.+++.|+.+. .+.+..++-+.+. .+|+||+--++-. -++-++.+- .
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~----~~Dvill~pqi~~---~~~~i~~~~~~~~ 75 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLD----DADVVLLAPQVAY---MLPDLKKETDKKG 75 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcC----CCCEEEECchHHH---HHHHHHHHhhhcC
Confidence 467888755443 44556777777888765 4555555444432 4799999654322 233334332 5
Q ss_pred CcEEEEec
Q 009017 89 LPTIITSN 96 (546)
Q Consensus 89 iPIIvLSs 96 (546)
+||.++..
T Consensus 76 ipv~~I~~ 83 (95)
T TIGR00853 76 IPVEVING 83 (95)
T ss_pred CCEEEeCh
Confidence 79998865
No 327
>PRK00654 glgA glycogen synthase; Provisional
Probab=38.28 E-value=2.5e+02 Score=30.73 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCEEEEEeCC-HHHHHHHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 17 GLRVLLLDQD-SSAAAELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD-~~~~~~L~~~Le~~Gy~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
..+++|+.+. ......++++.++.+-++.. .-+.+.+-..+.. .|++|+-.. -+ .-|+.+++.+. .+|+|
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS~-~E-~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPSR-FE-PCGLTQLYALRYGTLPI 384 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCCC-CC-CchHHHHHHHHCCCCEE
Confidence 3567777653 34455666666655544332 2232323333443 577777433 34 56788888877 67766
Q ss_pred EEecCCChHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALG------AVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aG------AdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+ +...... +.+..| ..+|+..|.+.++|..+|.+++.
T Consensus 385 ~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 385 V-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred E-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 5 3322221 123334 78999999999999999888764
No 328
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.25 E-value=1.1e+02 Score=31.42 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=39.6
Q ss_pred CHHHHHHHhC----CCcEEEEecCCC------hHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009017 78 GSFKFLETAK----DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 78 dGlellr~Lr----~iPIIvLSs~~d------~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~ 130 (546)
+.+++++.+| ++|+++|+-.+. ...+.++.++|++.++.-....++....+..
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 3567777776 578887776554 5678899999999999988887776654443
No 329
>PRK01362 putative translaldolase; Provisional
Probab=38.21 E-value=2e+02 Score=28.72 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=50.9
Q ss_pred HHHHhhCCCEE--EEECCHHHHHHHhhcCCCCeeEEE--E-ecCCCCCCCHHHHHHHhC------C-CcEEEEecCCChH
Q 009017 34 KFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAI--V-EVTTSNTDGSFKFLETAK------D-LPTIITSNIHCLS 101 (546)
Q Consensus 34 ~~~Le~~Gy~V--~~ass~~eALe~L~~~~~~pDLVI--l-Dl~mp~~~dGlellr~Lr------~-iPIIvLSs~~d~e 101 (546)
...|.+.|+.| +.+-+..+|+...... .+.|- + -+.-.+ .+|+++++.+. . -.-|+..+..+..
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g-~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~ 169 (214)
T PRK01362 94 VKALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIG-TDGMELIEDIREIYDNYGFDTEIIAASVRHPM 169 (214)
T ss_pred HHHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcC-CCHHHHHHHHHHHHHHcCCCcEEEEeecCCHH
Confidence 44566677764 4667788887777652 23221 1 112224 68999888774 2 3455566677889
Q ss_pred HHHHHHHcCCCEEEeCC
Q 009017 102 TMMKCIALGAVEFLRKP 118 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~KP 118 (546)
.+.++..+|++ +++=|
T Consensus 170 ~v~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 170 HVLEAALAGAD-IATIP 185 (214)
T ss_pred HHHHHHHcCCC-EEecC
Confidence 99999999998 55444
No 330
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=37.92 E-value=2.2e+02 Score=27.76 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=40.6
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
.|++|+-... + .-|..+++.+. .+|||+. ... ...+.+..|..+|+..+-+.+++...++.+
T Consensus 264 ~d~~i~ps~~-e-~~~~~~~Ea~~~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i 326 (353)
T cd03811 264 ADLFVLSSRY-E-GFPNVLLEAMALGTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALAL 326 (353)
T ss_pred CCEEEeCccc-C-CCCcHHHHHHHhCCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 4666654333 3 34667777776 7888753 322 334567788899999999999886555543
No 331
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.68 E-value=4.5e+02 Score=31.61 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=4.0
Q ss_pred CCeeEEEE
Q 009017 62 ENFHVAIV 69 (546)
Q Consensus 62 ~~pDLVIl 69 (546)
+.+.|+++
T Consensus 222 n~~Gl~~v 229 (1102)
T KOG1924|consen 222 NKFGLVLV 229 (1102)
T ss_pred cccceeee
Confidence 44555544
No 332
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.64 E-value=63 Score=30.12 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH-HHHHHhhcCCCCeeEEEEecCCCC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN-EALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~-eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
.+.+|+|+.......+-|..+|.+.|..|..+++.. ++.+.++. -|+|++-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh----CCEEEEecCCCC
Confidence 467999999999999999999999999999887322 22233333 699999876654
No 333
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=37.54 E-value=1.7e+02 Score=28.30 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHH---HhhC---CCEEEEECCH-----HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHh
Q 009017 19 RVLLLDQDSSAAAELKFK---LEAM---DYIVSTFYNE-----NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETA 86 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~---Le~~---Gy~V~~ass~-----~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell-r~L 86 (546)
||++|--+......+... |.+. |+++..+... .++++.+...-..-|+||..+-.-+ +-...+ ..|
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~ADii~~smlF~e--d~v~~l~~~L 79 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIARADIIFGSMLFIE--DHVRPLLPAL 79 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHhCCEEEeehhhhH--HHHHHHHHHH
Confidence 555555444444444333 3333 6777655433 1233333221123689998765433 222222 223
Q ss_pred ---C-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 87 ---K-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 87 ---r-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
| ++|++++.. +...+++.-+.|-.+.=.++-....++.++.
T Consensus 80 ~~~r~~~~a~i~~~--sapelm~lTrlG~f~m~~~~~g~~~~lKkl~ 124 (164)
T PF11965_consen 80 EARRDHCPAMIIFE--SAPELMRLTRLGKFSMGGEKSGPPALLKKLR 124 (164)
T ss_pred HHHHccCCEEEEEc--CHHHHHHHhcccceecCCCCcchHHHHHHHH
Confidence 2 688888776 3456777788887666222334444444433
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.41 E-value=2.7e+02 Score=28.66 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=33.2
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECC---H----HHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYN---E----NEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~---~~~~L~~~Le~~Gy~V~~ass---~----~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|+|||-|.. ..+.+..+.+..|..+..... . .+++..+.. ..+|+||+|.-
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 468999998852 234556666667766553322 2 233444444 56999999974
No 335
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.09 E-value=3.2e+02 Score=27.14 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=48.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~ 127 (546)
+.++..+.+.. .|++|+-.. .+ .-|..+++.+. .+|||..- ... ..+.+..+-.+++..+.+.++|...
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~-~e-~~~~~~lEa~a~g~PvI~~~-~~~---~~~~i~~~~~g~~~~~~~~~~l~~~ 325 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSR-TE-TFGLVVLEAMASGLPVVAPD-AGG---PADIVTDGENGLLVEPGDAEAFAAA 325 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcc-cc-cCCcHHHHHHHcCCCEEEcC-CCC---chhhhcCCcceEEcCCCCHHHHHHH
Confidence 44555555554 467665433 23 34677888876 78887543 322 2334555678899999999999998
Q ss_pred HHHHHH
Q 009017 128 WQHVVH 133 (546)
Q Consensus 128 I~~vlr 133 (546)
|..++.
T Consensus 326 i~~l~~ 331 (364)
T cd03814 326 LAALLA 331 (364)
T ss_pred HHHHHc
Confidence 887765
No 336
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=37.04 E-value=4.5e+02 Score=26.42 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=47.7
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+..+.+.. ...|.|-++...++..-.++.+++++ ++|||..-+-.+.+.+.+++..||+.+..
T Consensus 153 ~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 153 DDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred CHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 45566666666 56787777654432112367888886 79999888888999999999999887754
No 337
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=37.02 E-value=2.1e+02 Score=25.72 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred CEEEEEeCCHHHHHHHHHHH---hhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCc
Q 009017 18 LRVLLLDQDSSAAAELKFKL---EAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLP 90 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~L---e~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iP 90 (546)
--++||.||+..+..|++-. ++.+-. |+-+.+ .++++.+++ -.+++-|+ - .+|-++.+++. +-|
T Consensus 25 ~p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t-~~~l~~Lr~--lapgl~l~-----P-~sgddLa~rL~l~hYP 95 (105)
T TIGR03765 25 TPLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVET-AAALQRLRA--LAPGLPLL-----P-VSGDDLAERLGLRHYP 95 (105)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHH--HcCCCccc-----C-CCHHHHHHHhCCCccc
Confidence 36899999999998887654 444322 334444 455677776 33444443 4 68899999886 788
Q ss_pred EEEEe
Q 009017 91 TIITS 95 (546)
Q Consensus 91 IIvLS 95 (546)
+++..
T Consensus 96 vLit~ 100 (105)
T TIGR03765 96 VLITA 100 (105)
T ss_pred EEEec
Confidence 87654
No 338
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=37.02 E-value=54 Score=33.21 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHhC----CCcEEEEecCC-Ch
Q 009017 30 AAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK----DLPTIITSNIH-CL 100 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~as---s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~Lr----~iPIIvLSs~~-d~ 100 (546)
-..+..+|+..||+|+-.. ..++.++..++ ..+|+|-+...|...+.++ ++++.|+ +-+++++.+-. -.
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvt 198 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVT 198 (227)
T ss_pred HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCcccc
Confidence 3667888889999988332 46778888888 7899999988886534443 3445554 45666664422 22
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+. -+-+.|||.|-.-
T Consensus 199 q~--~a~~iGAD~~~~d 213 (227)
T COG5012 199 QD--WADKIGADAYAED 213 (227)
T ss_pred HH--HHHHhCCCccCcC
Confidence 22 2456788888653
No 339
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=36.82 E-value=5.2e+02 Score=27.58 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=59.3
Q ss_pred EEEEEeCC----HHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC----------CCC--H
Q 009017 19 RVLLLDQD----SSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN----------TDG--S 79 (546)
Q Consensus 19 rILIVDDD----~~~~~~L~~~Le~~G-y~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~----------~~d--G 79 (546)
.++++|-. ....+.++.+-+... ..|+ -+.+.+.|..++.. ..|.|.+.+.-.. ... +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 57777762 333344444433332 3233 24577888777765 4677776532111 011 2
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+..+..++ ++|||.-.+-....++.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44444443 789999888888999999999999988764
No 340
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.75 E-value=2.3e+02 Score=31.51 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCEEEEEeCCHHHH---HHHHHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~---~~L~~~Le~~Gy~V~~as---s~----~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|+||+-|.... +.++.+-+..+..+.... +. .++++.+.. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 46899998886433 222323334455544333 21 245666665 57999999974
No 341
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=36.69 E-value=2.1e+02 Score=28.93 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC------CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr------~iPIIvLSs 96 (546)
....+...|++.|+.+. -|.++-..+..+.. ..||+|=+|-.+-.. .....+++.|- .+.|| .-+
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEG 213 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEG 213 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-Eee
Confidence 34456666778898855 68899999999999 889999998765321 22334555542 34444 344
Q ss_pred CCChHHHHHHHHcCCC----EEEeCCCCHHHHHHHHH
Q 009017 97 IHCLSTMMKCIALGAV----EFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 97 ~~d~e~i~~Al~aGAd----DYL~KP~~~eeL~~~I~ 129 (546)
-.+.+....+.+.|++ .|+.||...+++...+.
T Consensus 214 VEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 214 VETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred cCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 5566777778888987 35788999877766543
No 342
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=36.54 E-value=3.7e+02 Score=27.23 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCC--CHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNTD--GSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~~--dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+.+.+ ...|.|.+|...++ . -.++.+++++ .+|||..-+-.+.+.+.+.++.||+....
T Consensus 152 ~~a~~l~~--aGad~i~Vd~~~~g-~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVD--DGFDGIHVDAMYPG-KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHH--cCCCEEEEeeCCCC-CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 45555666 57898999976655 3 2477777776 37888887778899999999999998754
No 343
>PRK07206 hypothetical protein; Provisional
Probab=36.53 E-value=3.2e+02 Score=29.30 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=20.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST 46 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ 46 (546)
|.+||||+-... ...+.+.+++.||+++.
T Consensus 2 ~k~~liv~~~~~-~~~~~~a~~~~G~~~v~ 30 (416)
T PRK07206 2 MKKVVIVDPFSS-GKFLAPAFKKRGIEPIA 30 (416)
T ss_pred CCeEEEEcCCch-HHHHHHHHHHcCCeEEE
Confidence 457889988644 44566777778987653
No 344
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=36.47 E-value=1.9e+02 Score=31.08 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=41.4
Q ss_pred CEEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH
Q 009017 18 LRVLLLDQDSSA----AAELKFKLEAMDYIVSTFYN---------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (546)
Q Consensus 18 ~rILIVDDD~~~----~~~L~~~Le~~Gy~V~~ass---------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr 84 (546)
.++|||.|.... .+.+...|+..|..+..+.. .+++.+.++. ..+|+||- +.+ ..-+++.+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GS~iD~aK 102 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFIIS---IGG-GSPHDCAK 102 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEEE---eCC-cHHHHHHH
Confidence 489999876543 34678888887877766643 4567777777 67898874 234 44556555
Q ss_pred Hh
Q 009017 85 TA 86 (546)
Q Consensus 85 ~L 86 (546)
.+
T Consensus 103 ~i 104 (377)
T cd08176 103 AI 104 (377)
T ss_pred HH
Confidence 43
No 345
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=36.28 E-value=3.8e+02 Score=27.01 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=39.5
Q ss_pred EEEEEeCCHH----HHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 19 RVLLLDQDSS----AAAELKFKLEAMDYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 19 rILIVDDD~~----~~~~L~~~Le~~Gy~V~~a-------ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
+|.|+.++.. ....++..+++.|++|+.. .+....+..+.. ..+|+||+... . .+...+++.++
T Consensus 137 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~--~~~~~vi~~~~--~-~~~~~~~~~~~ 211 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA--ANPDAVFFGGY--Y-PEAGPLVRQMR 211 (334)
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEcCc--c-hhHHHHHHHHH
Confidence 4555544333 3345566677778886632 345566777777 67899988653 2 34667777765
No 346
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.27 E-value=2.6e+02 Score=28.08 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=48.9
Q ss_pred CCHHHHHHHhhcCCCCee-EEEEecC-CC-CCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 48 YNENEALSAFSDKPENFH-VAIVEVT-TS-NTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 48 ss~~eALe~L~~~~~~pD-LVIlDl~-mp-~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+..++.+.+.. . ++ ++++|++ +- +...-+++++++. .+||++=-+-.+.+.+.++++.|++..+.-
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 477787777776 4 54 7778876 21 2013478888875 578887667778899999999999988764
No 347
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=36.24 E-value=4.2e+02 Score=29.35 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=58.9
Q ss_pred CCEEEEEeC---CHHHHHHHHHHHhhC--CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC------C----CCCH
Q 009017 17 GLRVLLLDQ---DSSAAAELKFKLEAM--DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS------N----TDGS 79 (546)
Q Consensus 17 ~~rILIVDD---D~~~~~~L~~~Le~~--Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp------~----~~dG 79 (546)
+..+++||- +........+.+++. +..|. .+.+.++|..++.. ..|.|.+.+.-. . ....
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCccH
Confidence 466788877 443333333333332 23333 57788888777765 468776543210 0 0112
Q ss_pred HHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+.++..+ + .+|||.-.+-.....+.+|+.+||+....=
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3333322 2 688888778888999999999999998874
No 348
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.22 E-value=1.1e+02 Score=29.53 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=48.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC--CCEEEEE----C--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVSTF----Y--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~~a----s--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+|.++...+...+.+.+.|++. |.++..+ + ..++.++.+.. ..+|+|++-+.+|. .. .++.+.+
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~Pk-QE--~~~~~~~ 121 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPK-QE--IWMRNHR 121 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcH-hH--HHHHHhH
Confidence 479999999999999999999865 5665533 1 22345677777 68999999999997 43 3444443
No 349
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.10 E-value=2.5e+02 Score=24.23 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=54.3
Q ss_pred CEEEEEeCC--HHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC-CCCHHHHHHHhC--CCcEE
Q 009017 18 LRVLLLDQD--SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK--DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD--~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~-~~dGlellr~Lr--~iPII 92 (546)
-+|+++... ......+...|...|+.+....+..+........ ..-|++|+ +...+ ..+..++++.++ .+++|
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~-iS~~g~~~~~~~~~~~a~~~g~~iv 91 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIA-ISFSGETKETVEAAEIAKERGAKVI 91 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHcCCeEE
Confidence 356666543 3455667777888888888777776655544321 12244443 22222 023455666665 78999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCC
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~ 120 (546)
++|+..+.... .-++..|.=|..
T Consensus 92 ~iT~~~~~~l~-----~~~d~~i~~~~~ 114 (139)
T cd05013 92 AITDSANSPLA-----KLADIVLLVSSE 114 (139)
T ss_pred EEcCCCCChhH-----HhcCEEEEcCCC
Confidence 99997664332 224555544443
No 350
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=36.02 E-value=1.3e+02 Score=37.72 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~as---s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr- 87 (546)
.-+||+. |-+..=...+.-+|+..||+|+-.. ..++.++.+.+ ..+|+|.+...|...+.. .++++.|+
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 3577777 6666666777778888999998433 57888888888 789999999877652322 34555664
Q ss_pred ---CCcEEEEecCCChHH-HHH--HHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 88 ---DLPTIITSNIHCLST-MMK--CIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~-i~~--Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+++|++=-+..+... ..+ .--.|++.|.. +..+-+..++.++
T Consensus 829 ~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~---DA~~~v~~~~~l~ 876 (1229)
T PRK09490 829 QGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT---DASRAVGVVSSLL 876 (1229)
T ss_pred cCCCCeEEEEeeccchhhhhhhhhhcccCCcEEec---CHHHHHHHHHHHh
Confidence 566665443333322 111 11128877765 3334444333333
No 351
>PRK00811 spermidine synthase; Provisional
Probab=36.01 E-value=1.2e+02 Score=31.25 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=38.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC------CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM------DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~------Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
.+|.+||=|+.+.+..++.|... .-+|. ...++.+.+.. .. ..||+||+|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~--~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TE--NSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CC--CcccEEEECCCCCC
Confidence 47999999999999998888642 12333 56666665544 23 57999999986553
No 352
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.91 E-value=88 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=33.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|+|+|||-..-....+...|++.|+++..+.+.++ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 47999997777777788899999999998887654 22 3577775
No 353
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.89 E-value=97 Score=27.14 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC-CCCHHHHHHHhC--CCcEEEEecCCChHH
Q 009017 26 DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK--DLPTIITSNIHCLST 102 (546)
Q Consensus 26 D~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~-~~dGlellr~Lr--~iPIIvLSs~~d~e~ 102 (546)
.......++..|...|+.+....+.......+..- ..-|++|+ +...+ ..+-+++++.++ .++||.+|+..+...
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 34455677777877888887666554333222221 12355555 33443 123355666665 799999999776554
Q ss_pred HHHHHHcCCCEEEeCCC
Q 009017 103 MMKCIALGAVEFLRKPL 119 (546)
Q Consensus 103 i~~Al~aGAdDYL~KP~ 119 (546)
.. .++-.|.-+.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 32 3666666554
No 354
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.81 E-value=1.8e+02 Score=28.57 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--CCcEEEEec
Q 009017 30 AAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSN 96 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr--~iPIIvLSs 96 (546)
...+.+.+++.||.+..+.. . .+.++.+.. ..+|.||+-.. + .+. .++++.++ .+|||++-.
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~--~~~Dgiii~~~--~-~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT--RGVNVLIINPV--D-PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEecC--C-ccchHHHHHHHHHCCCCEEEecC
Confidence 34556667788999876543 2 245666666 57898887432 2 222 34556654 789998854
No 355
>PRK10060 RNase II stability modulator; Provisional
Probab=35.67 E-value=3.2e+02 Score=31.60 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHhC------CCcEEEEe
Q 009017 28 SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK------DLPTIITS 95 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp----~~~dGlellr~Lr------~iPIIvLS 95 (546)
.....+...|++.|+.+. -|.++...+..+.. ..+|.|=+|-.+- .......+++.|- .+.|| ..
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-Ae 617 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AE 617 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-Ee
Confidence 344455677788899976 47788888999988 7899999995432 1023445555542 45554 45
Q ss_pred cCCChHHHHHHHHcCCC---E-EEeCCCCHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAV---E-FLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAd---D-YL~KP~~~eeL~~~I~~ 130 (546)
+-.+.+....+.+.|++ + |+.||...+++...++.
T Consensus 618 GVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 618 GVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred cCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 66677777778888976 3 47799999998776543
No 356
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.59 E-value=2.9e+02 Score=27.71 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHc-CCCEEEe------
Q 009017 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAL-GAVEFLR------ 116 (546)
Q Consensus 50 ~~eALe~L~~~~~~pD-LVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~a-GAdDYL~------ 116 (546)
..+..+.+.. ..++ +++.|+.-.+.+.| +++++.++ .+|||+-.+-.+.+.+.++++. ||++.+.
T Consensus 155 ~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 155 AVEWAKEVEE--LGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3455555555 4455 66766542111223 56777775 6999998888899999999975 9988876
Q ss_pred CCCCHHHHHHH
Q 009017 117 KPLSEDKLRNL 127 (546)
Q Consensus 117 KP~~~eeL~~~ 127 (546)
.-++..+++..
T Consensus 233 ~~~~~~~~~~~ 243 (253)
T PRK02083 233 GEITIGELKAY 243 (253)
T ss_pred CCCCHHHHHHH
Confidence 34555555543
No 357
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=35.54 E-value=1.2e+02 Score=31.18 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=59.4
Q ss_pred EEEEEeCCHHHHHHHHHHH---h-hCC--CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHhC---
Q 009017 19 RVLLLDQDSSAAAELKFKL---E-AMD--YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK--- 87 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~L---e-~~G--y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~Lr--- 87 (546)
.|||-|++-.+...+...+ + ..+ .. .+.+.+.+|+.+.+.. .+|+|.+|-.-++ .+. +++.++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e---~l~~~v~~i~~~~ 226 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE---ELKEAVKLLKGLP 226 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH---HHHHHHHHhccCC
Confidence 4777777755553333222 2 233 23 3588999999998876 5899999875443 332 344444
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
++| |+.++--+.+.+.+..+.||+.+..
T Consensus 227 ~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 227 RVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 344 4556667888999999999988754
No 358
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=35.52 E-value=2.6e+02 Score=28.84 Aligned_cols=87 Identities=10% Similarity=0.127 Sum_probs=60.9
Q ss_pred HHHHHHhhCCCEEEEECCHH--HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcEEEEecCCChHHH
Q 009017 32 ELKFKLEAMDYIVSTFYNEN--EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPTIITSNIHCLSTM 103 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~~ass~~--eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPIIvLSs~~d~e~i 103 (546)
.++..|......+-...+.. -..+.+.. ..||-+++|.+-.. .|.-.++.+|+ ..|||=+. ..+...+
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHap-nd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~I 82 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAP-NDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMI 82 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccC-ccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHH
Confidence 46666765444444333322 34566666 67999999998877 78777888776 46666443 4678899
Q ss_pred HHHHHcCCCEEEeCCCCHH
Q 009017 104 MKCIALGAVEFLRKPLSED 122 (546)
Q Consensus 104 ~~Al~aGAdDYL~KP~~~e 122 (546)
.++++.||..+|.-=++..
T Consensus 83 kq~LD~GAqtlliPmV~s~ 101 (255)
T COG3836 83 KQLLDIGAQTLLIPMVDTA 101 (255)
T ss_pred HHHHccccceeeeeccCCH
Confidence 9999999999998666543
No 359
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=35.50 E-value=1.6e+02 Score=31.46 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=40.2
Q ss_pred CEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEECC---------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 009017 18 LRVLLLDQDSSAA-----AELKFKLEAMDYIVSTFYN---------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (546)
Q Consensus 18 ~rILIVDDD~~~~-----~~L~~~Le~~Gy~V~~ass---------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell 83 (546)
.|+|||-|..... +.+...|+..|+.+..+.. ..++++.+++ ..+|+||- +.+ .+-+++.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GSviD~A 97 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA---LGG-GSPIDAA 97 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE---eCC-ccHHHHH
Confidence 4788887765443 5677888877877766543 5567777777 67887775 234 4445544
Q ss_pred HH
Q 009017 84 ET 85 (546)
Q Consensus 84 r~ 85 (546)
+.
T Consensus 98 K~ 99 (375)
T cd08179 98 KA 99 (375)
T ss_pred HH
Confidence 43
No 360
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=35.38 E-value=1.8e+02 Score=29.02 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=50.0
Q ss_pred HHHHhhCCCEE--EEECCHHHHHHHhhcCCCCeeEEEE--e-cCCCCCCCHHHHHHHhC--------CCcEEEEecCCCh
Q 009017 34 KFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAIV--E-VTTSNTDGSFKFLETAK--------DLPTIITSNIHCL 100 (546)
Q Consensus 34 ~~~Le~~Gy~V--~~ass~~eALe~L~~~~~~pDLVIl--D-l~mp~~~dGlellr~Lr--------~iPIIvLSs~~d~ 100 (546)
.+.|+..|+.| +.+-+..+|+...... .+.|=. . +.--+ .+|+++++.+. ++. |+..+..+.
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g-~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~ 168 (213)
T TIGR00875 94 VKILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIG-GDGMKLIEEVKTIFENHAPDTE-VIAASVRHP 168 (213)
T ss_pred HHHHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcC-CCHHHHHHHHHHHHHHcCCCCE-EEEeccCCH
Confidence 34566677664 4677788887777662 232211 1 11124 68999888774 355 556666788
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
..+.++..+|++.+-.-
T Consensus 169 ~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 169 RHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHHHcCCCEEEcC
Confidence 89999999998765443
No 361
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=35.33 E-value=1.6e+02 Score=30.11 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=43.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC---CCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK---PENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~---~~~pDLVIlDl~ 72 (546)
.-+|.-+|-++...+.-+..++..|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 458999999999998889999988853 44 566777877776421 147999999986
No 362
>PRK06182 short chain dehydrogenase; Validated
Probab=35.06 E-value=1.7e+02 Score=29.06 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
+.+|||..-..-+...+...|.+.|++|+......+.++.+.. ....++.+|+.-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--~~~~~~~~Dv~~ 57 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--LGVHPLSLDVTD 57 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--CCCeEEEeeCCC
Confidence 4578999988889999999998899998855444444555544 346777788753
No 363
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.02 E-value=1.8e+02 Score=28.41 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
.+...+.+.+++.||.+....+ ..++++.+.. ..+|-||+..... +.-.+++.++ .+|+|++-..
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~---~~~~~~~~~~~~~ipvV~i~~~ 88 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQ--RRMDGIIIAPGDE---RDPELVDALASLDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCC---CcHHHHHHHHhCCCCEEEEecc
Confidence 3445667777888999775432 2345666666 5788888743322 2234555554 6899988643
No 364
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=34.97 E-value=2.1e+02 Score=29.19 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=44.1
Q ss_pred CccCCCCcCccch----hhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhhcccCCc
Q 009017 299 PSKASGLQNSCGN----KANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPK 365 (546)
Q Consensus 299 ~~~~~~~~~~~~~----~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~~~~~~ 365 (546)
.+|-|++|+-+.. .|.|||-+. + --|+|.+ -+|--+=|||-.+||.-.|.=|...|+....
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkT-Q----YLALPER-AeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~ 183 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQT-Q----YLALPER-AELAASLGLTQTQVKIWFQNRRSKFKKLKKQ 183 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhc-c----hhcCcHH-HHHHHHhCCchhHhhhhhhhhHHHHHHHHhc
Confidence 3566777777764 478888653 2 2356654 4677777999999999999999888776653
No 365
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.71 E-value=1.9e+02 Score=29.26 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=51.2
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 47 FYNENEALSAFSDKPENFHVAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pDLVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+..+..+.+... .--.++++|+.-... ...++++++|+ ++||++--+-.+.+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34777777777662 223588889875431 22356777775 689998888889999999999999888764
No 366
>PRK05693 short chain dehydrogenase; Provisional
Probab=34.66 E-value=1.9e+02 Score=28.77 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=47.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh----CCCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L----r~iPIIv 93 (546)
.+|||..-...+...+...|.+.|+.|+.+....+.++.+.. .....+.+|+.-.+ +-.++++.+ ..+-+|+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~Dl~~~~--~~~~~~~~~~~~~~~id~vi 77 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--AGFTAVQLDVNDGA--ALARLAEELEAEHGGLDVLI 77 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--CCCeEEEeeCCCHH--HHHHHHHHHHHhcCCCCEEE
Confidence 478888888889999999998899998855433444454444 34566667765322 222344444 2455666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
..+
T Consensus 78 ~~a 80 (274)
T PRK05693 78 NNA 80 (274)
T ss_pred ECC
Confidence 544
No 367
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=34.54 E-value=3.5e+02 Score=27.09 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEE---EC------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHH
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVST---FY------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLET 85 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~---as------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~ 85 (546)
...+||++-.+. -+..|.+.|++.|+.|.. +. ...+..+.+.. ..+|+|++=- ..+++ |++.
T Consensus 129 ~~~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~--~~~d~v~ftS-----~~~~~~~~~~ 200 (255)
T PRK05752 129 PDPRVLIMRGEG-GRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEA--ERLNGLVVSS-----GQGFEHLQQL 200 (255)
T ss_pred CCCEEEEEccCc-cHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHh--CCCCEEEECC-----HHHHHHHHHH
Confidence 356899887774 566799999999977652 21 24456666776 6789888741 22322 2222
Q ss_pred -------hCCCcEEEEecCCChHHHHHHHHcCCC-EEEeCCCCHHHHHHHHHH
Q 009017 86 -------AKDLPTIITSNIHCLSTMMKCIALGAV-EFLRKPLSEDKLRNLWQH 130 (546)
Q Consensus 86 -------Lr~iPIIvLSs~~d~e~i~~Al~aGAd-DYL~KP~~~eeL~~~I~~ 130 (546)
+..+++++++. .....+-+.|.. ..+.+--+.+.|.++|..
T Consensus 201 ~~~~~~~~~~~~~~~ig~----~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~ 249 (255)
T PRK05752 201 AGADWPELARLPLFVPSP----RVAEQARAAGAQTVVDCRGASAAALLAALRR 249 (255)
T ss_pred hChhHHHhcCceEEEeCH----HHHHHHHHcCCCceeeCCCCChHHHHHHHHh
Confidence 33567777653 344556678864 446777788888887664
No 368
>PLN02476 O-methyltransferase
Probab=34.52 E-value=1.6e+02 Score=30.63 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~--~~~pDLVIlDl~ 72 (546)
.-+|.-+|-++...+..++.+++.|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 347899999999999999999998875 44 566777777665311 147999999985
No 369
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=34.40 E-value=42 Score=32.47 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCH-HHHHHHhhcCCCCeeEEEEecCCCCC-CC--HHHHHHHhC-CCcEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNE-NEALSAFSDKPENFHVAIVEVTTSNT-DG--SFKFLETAK-DLPTIIT 94 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~-~eALe~L~~~~~~pDLVIlDl~mp~~-~d--Glellr~Lr-~iPIIvL 94 (546)
|||||....+-..+.+.|++.|+.+.++... .++ ..+.. ..||.||+.=.-.+. .+ -.++++.+. .+||+-+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~--~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGI 78 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEA--LNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGV 78 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhh--CCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEE
Confidence 8999999999999999999999987765533 222 22333 346766664311010 01 134444443 6777765
Q ss_pred e
Q 009017 95 S 95 (546)
Q Consensus 95 S 95 (546)
.
T Consensus 79 C 79 (193)
T PRK08857 79 C 79 (193)
T ss_pred c
Confidence 4
No 370
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=34.29 E-value=1.4e+02 Score=28.94 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=43.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|-=... ..-.++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN-GALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHH
Confidence 7999999999999999988877653 33 455665666544321124799999864433 2233344443
No 371
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=34.21 E-value=1.1e+02 Score=32.81 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred CeeEEEEecCCCCCCCHHHHHHHhC-CC--cEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 63 NFHVAIVEVTTSNTDGSFKFLETAK-DL--PTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 63 ~pDLVIlDl~mp~~~dGlellr~Lr-~i--PIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+|+|++|+.-.....-++.+++|| .. +.|+--+-.+.+.+..++++|||...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 5899999997654222366778887 22 3443444678899999999999998654
No 372
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=34.18 E-value=5.5e+02 Score=27.49 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC--CEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD--YIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G--y~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
+++.++.+.+. ...++...+..+ ..|.. .-+.++..+.+.. ...|+++.-.. .+ .-++.+++.+. .+|||
T Consensus 264 l~~~iiG~g~~-~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~--~~~~v~v~~S~-~E-g~p~~llEAma~G~PVI 338 (407)
T cd04946 264 IKWTHIGGGPL-EDTLKELAESKPENISVNFTGELSNSEVYKLYKE--NPVDVFVNLSE-SE-GLPVSIMEAMSFGIPVI 338 (407)
T ss_pred EEEEEEeCchH-HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh--cCCCEEEeCCc-cc-cccHHHHHHHHcCCCEE
Confidence 34445555433 344555554332 23443 3355666677765 45677665332 22 23567788876 89987
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCC-CCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKP-LSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP-~~~eeL~~~I~~vlr 133 (546)
. |.... ..+.+..|..+++.-+ .+.++|.++|..++.
T Consensus 339 a-s~vgg---~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 339 A-TNVGG---TPEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred e-CCCCC---cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 6 44333 3456677888898876 478999999988775
No 373
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.11 E-value=4.5e+02 Score=28.57 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=42.7
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCC-------CCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTT-------SNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~m-------p~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
+..+..+.+.+ ...|+|+++-.. .. .+-.++.+.++ ++|||+ ..-.+.+.+.++++.||+.++
T Consensus 143 ~~~e~a~~l~e--AGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVK--AGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 45666677777 678999987322 12 23334444443 688885 556678889999999999987
No 374
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=34.10 E-value=2e+02 Score=27.91 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+.+ .+ ++++.+.. ..+|.||+...... ...+..+...+.+|+|++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~l~~~~~ipvV~i~~~ 88 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQ--KRVDGLLVMCSEYD-QPLLAMLERYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEecc
Confidence 345566677788999775432 22 45556666 56887777442212 111222222247999988653
No 375
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=34.10 E-value=75 Score=28.19 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~-~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPII 92 (546)
++++|.||.| ...... ++-.|..+..+.+.+++.+.++. ....+.+|++.-.+-+ . --+.++.++ ..|+|
T Consensus 2 ~~~kIaVIGD-~dtv~G----FrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~-~-i~~~i~~~~~~~~P~I 74 (104)
T PRK01395 2 TMYKIGVVGD-KDSILP----FKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAA-D-IPETIERYDNQVLPAI 74 (104)
T ss_pred cceeEEEEEC-HHHHHH----HHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHH-H-hHHHHHHhcCCCCCEE
Confidence 4568999988 444332 23457777777777766554432 0157889998755433 1 112334444 57877
Q ss_pred EEec
Q 009017 93 ITSN 96 (546)
Q Consensus 93 vLSs 96 (546)
+.-.
T Consensus 75 l~IP 78 (104)
T PRK01395 75 ILIP 78 (104)
T ss_pred EEeC
Confidence 6654
No 376
>PLN02366 spermidine synthase
Probab=34.00 E-value=1.7e+02 Score=30.89 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC--C---CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM--D---YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~--G---y~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
.+|.+||=|+.+.+..++.+... + -++. ...++.+.++.... ..||+||+|..-|.
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~ 177 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPV 177 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCC
Confidence 47888888888777777776542 1 1333 45566555554433 46899999876553
No 377
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=33.99 E-value=2.1e+02 Score=28.67 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHH---cCCCEEEeC----
Q 009017 51 NEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA---LGAVEFLRK---- 117 (546)
Q Consensus 51 ~eALe~L~~~~~~p-DLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~---aGAdDYL~K---- 117 (546)
.+.++.+.+ ... .+++.|+.-.+...| ++++++++ .+|||.-.+-.+.+.+.++.+ .||++.+.-
T Consensus 149 ~~~~~~l~~--~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 149 WEVLERLDS--AGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred HHHHHHHHh--cCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 455555555 333 588888876542223 67777775 789998777778888887754 499987653
Q ss_pred --CCCHHHHHHH
Q 009017 118 --PLSEDKLRNL 127 (546)
Q Consensus 118 --P~~~eeL~~~ 127 (546)
.++.++++..
T Consensus 227 ~g~~~~~~~~~~ 238 (241)
T PRK14024 227 AGAFTLPEALAV 238 (241)
T ss_pred cCCCCHHHHHHH
Confidence 5666665543
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.99 E-value=2.2e+02 Score=31.01 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=46.9
Q ss_pred CEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC-CCCCCH--HHHHHHhC--CC
Q 009017 18 LRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT-SNTDGS--FKFLETAK--DL 89 (546)
Q Consensus 18 ~rILIVDDD~~---~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m-p~~~dG--lellr~Lr--~i 89 (546)
.+|.+|..|.. -.+.|+.+-+..|..+..+.+..+....+..- ..+|+||+|.-= .. .+. .+.+..+. ..
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~-~d~~l~e~La~L~~~~~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQ-RDRTVSDQIAMLHGADT 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCc-ccHHHHHHHHHHhccCC
Confidence 46777777664 33555555566677777666655544444321 347999999741 11 122 23444443 23
Q ss_pred c---EEEEecCCChHHH
Q 009017 90 P---TIITSNIHCLSTM 103 (546)
Q Consensus 90 P---IIvLSs~~d~e~i 103 (546)
+ ++++++....+.+
T Consensus 246 ~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 246 PVQRLLLLNATSHGDTL 262 (374)
T ss_pred CCeEEEEecCccChHHH
Confidence 3 6777766555443
No 379
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=33.95 E-value=4.2e+02 Score=28.63 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.++..+++.......|++++=-. .+ .-|+.+++.+. .+|||+... .. ..+.+..|..+|+..|-+.++|..+|
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~-~E-~fg~~~lEAma~G~PvV~s~~-gg---~~eiv~~~~~G~lv~~~d~~~la~~i 400 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPAL-TE-PFGLTLLEAAACGLPIVATDD-GG---PRDIIANCRNGLLVDVLDLEAIASAL 400 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccc-cC-CcccHHHHHHHhCCCEEEeCC-CC---cHHHhcCCCcEEEeCCCCHHHHHHHH
Confidence 45555555430012377665322 23 44778888887 889876543 22 23445678889999999999999998
Q ss_pred HHHHH
Q 009017 129 QHVVH 133 (546)
Q Consensus 129 ~~vlr 133 (546)
..++.
T Consensus 401 ~~ll~ 405 (439)
T TIGR02472 401 EDALS 405 (439)
T ss_pred HHHHh
Confidence 88765
No 380
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.79 E-value=3.9e+02 Score=26.69 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=52.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE----ECCHHHHHHHhhcCCCCeeEE-EEecCC------------------CCC
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVA-IVEVTT------------------SNT 76 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~----ass~~eALe~L~~~~~~pDLV-IlDl~m------------------p~~ 76 (546)
.+|-.++......+.+.|.+.|++++. ...+.++++.+++ ..++++ -.+.-+ |.
T Consensus 19 aV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~--~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~- 95 (212)
T PRK05718 19 PVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK--EVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG- 95 (212)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH--HCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC-
Confidence 345567777778888888888887653 2355667777766 445643 333332 22
Q ss_pred CCHHHHHHHhCCCcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 77 DGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 77 ~dGlellr~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
.+- ++++..++.-|.++-+-.+...+.+|+++|++-+-.-|
T Consensus 96 ~~~-~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 96 LTP-PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCH-HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEcc
Confidence 222 33333333333334344444556667777766555544
No 381
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=33.77 E-value=1.9e+02 Score=28.05 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ .+ +.++.+.. ..+|.||+--.... ...++.++ .+|+|++-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE--RGVDGLALIGLDHS----PALLDLLARRGVPYVATWN 86 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEcC
Confidence 345567777888999886553 22 34555555 56887776322112 24455553 689988743
No 382
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=33.63 E-value=3.8e+02 Score=26.50 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=43.9
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCC----CHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~----dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~ee 123 (546)
+.++..+.+.. .|++|+=..... . -+..+++.+. .+|||+.......+ .+..+..+++..+-+.++
T Consensus 284 ~~~~~~~~~~~----~di~i~~~~~~~-~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~ 354 (394)
T cd03794 284 PKEELPELLAA----ADVGLVPLKPGP-AFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEA 354 (394)
T ss_pred ChHHHHHHHHh----hCeeEEeccCcc-cccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCCCHHH
Confidence 33455555544 355555433221 1 1234566665 78877643332222 334446778888889999
Q ss_pred HHHHHHHHHH
Q 009017 124 LRNLWQHVVH 133 (546)
Q Consensus 124 L~~~I~~vlr 133 (546)
|.+.|..++.
T Consensus 355 l~~~i~~~~~ 364 (394)
T cd03794 355 LAAAILELLD 364 (394)
T ss_pred HHHHHHHHHh
Confidence 9999888773
No 383
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=33.61 E-value=2.2e+02 Score=28.86 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=38.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC----EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHhC
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDY----IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK 87 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy----~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~Lr 87 (546)
|++.|-++...+......|...|. +++..+..++++..+.. .|++++|...-+ -. ++++.++
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~----iDF~vVDc~~~d---~~~~vl~~~~ 137 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKG----IDFVVVDCKRED---FAARVLRAAK 137 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccC----CCEEEEeCCchh---HHHHHHHHhc
Confidence 444444444455666666765554 23344456777776654 899999998533 45 6777665
No 384
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=33.55 E-value=3.6e+02 Score=25.67 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhh----CCCEEEEECCHHHHHHHhhc--CCCCeeEEEEecCCCCCCCHHHHHHHh----C--CCcEEEE
Q 009017 27 SSAAAELKFKLEA----MDYIVSTFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFLETA----K--DLPTIIT 94 (546)
Q Consensus 27 ~~~~~~L~~~Le~----~Gy~V~~ass~~eALe~L~~--~~~~pDLVIlDl~mp~~~dGlellr~L----r--~iPIIvL 94 (546)
...|+.|...|.. .|++|+++-++...-..... ....+.+|+..-. ...-++++.+ . .-.|+|+
T Consensus 25 ~~aR~~Li~~L~~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~----~tAD~~Ie~~v~~~~~~~~~v~VV 100 (166)
T PF05991_consen 25 EAARERLIEMLSEYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEG----ETADDYIERLVRELKNRPRQVTVV 100 (166)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECCCC----CCHHHHHHHHHHHhccCCCeEEEE
Confidence 3455566666654 37887766554322111111 0024567776542 3344455443 3 3578888
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|+ |......+...|| +.++.++|...+...-..
T Consensus 101 TS--D~~iq~~~~~~GA-----~~iss~ef~~~l~~~~~~ 133 (166)
T PF05991_consen 101 TS--DREIQRAARGRGA-----KRISSEEFLRELKAAKRE 133 (166)
T ss_pred eC--CHHHHHHHhhCCC-----EEEcHHHHHHHHHHHHHH
Confidence 87 5556666778887 356888998888766554
No 385
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.44 E-value=1.5e+02 Score=29.05 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ . .+.++.+.. ..+|.||+.-...+.... .+.++.+. .+|+|++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLA--RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcC
Confidence 445677777888999765432 2 245666766 578987774332220111 23345443 799998854
No 386
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=33.29 E-value=1.7e+02 Score=29.33 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=43.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~--~~~pDLVIlDl~m 73 (546)
.-+|.-+|-++...+..++.++..|+. +. ...+..+.+..+... ...||+|++|..-
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k 154 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK 154 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH
Confidence 358999999999999999999988763 33 566777777766421 1479999999753
No 387
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=33.21 E-value=4.1e+02 Score=26.25 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.++..+.+.. .|++|+-.. .+ .-|+.+++.+. .+|||.. ... ...+.+..|..+|+..+.+. ++.+.|
T Consensus 269 ~~~~~~~~~~----ad~~l~~s~-~e-~~~~~~~Ea~~~g~PvI~~-~~~---~~~~~i~~~~~g~~~~~~~~-~~~~~i 337 (374)
T cd03817 269 REELPDYYKA----ADLFVFAST-TE-TQGLVLLEAMAAGLPVVAV-DAP---GLPDLVADGENGFLFPPGDE-ALAEAL 337 (374)
T ss_pred hHHHHHHHHH----cCEEEeccc-cc-CcChHHHHHHHcCCcEEEe-CCC---ChhhheecCceeEEeCCCCH-HHHHHH
Confidence 3444455544 466665433 33 34677888776 7888854 322 23455677788999998877 788877
Q ss_pred HHHHH
Q 009017 129 QHVVH 133 (546)
Q Consensus 129 ~~vlr 133 (546)
..++.
T Consensus 338 ~~l~~ 342 (374)
T cd03817 338 LRLLQ 342 (374)
T ss_pred HHHHh
Confidence 77665
No 388
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=32.95 E-value=1.1e+02 Score=32.13 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=40.1
Q ss_pred CHHHHHHHhC---CCcEE--EEecCCChHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 009017 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 78 dGlellr~Lr---~iPII--vLSs~~d~e~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vlr 133 (546)
.+++++++++ .+||| ...+-.+.+.+..++++||+.+++= .-++.+....+...+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 3677887775 69998 6666668999999999999998653 3355555555554443
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=32.94 E-value=1.1e+02 Score=28.32 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh--CCCcEEEEecC
Q 009017 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L--r~iPIIvLSs~ 97 (546)
..++++.++. ..+|+||+|. ++ .. -.....+ .+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG-~~-~~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VG-VG-QSEVDIASMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--Cc-cC-hhhhhHHHhCCEEEEEECCC
Confidence 4566777766 5799999998 44 32 2222333 36677777765
No 390
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=32.90 E-value=1.6e+02 Score=29.95 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCEEEEEC---CH--HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVSTFY---NE--NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~as---s~--~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~ 97 (546)
...+.+.+++.||.+..+. +. +++++.+.+ ..+|-||+-... .+.-.+.+.++ ++|+|++...
T Consensus 20 i~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~--~~vDGiI~~s~~---~~~~~l~~~~~~~iPvV~~~~~ 88 (279)
T PF00532_consen 20 IRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQ--RRVDGIILASSE---NDDEELRRLIKSGIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH--TTSSEEEEESSS---CTCHHHHHHHHTTSEEEEESS-
T ss_pred HHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHh--cCCCEEEEeccc---CChHHHHHHHHcCCCEEEEEec
Confidence 3455666778899976443 22 256777777 678866665222 22122222223 6899888665
No 391
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.80 E-value=1.5e+02 Score=32.57 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc-E-EEEecCCChHHHHHHHHcCCCEEEe
Q 009017 53 ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP-T-IITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 53 ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP-I-IvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
-.+.+-+ ...|+|++|..-+....-+++++.|+ ..| + |++..-.+.+.+..++++||+....
T Consensus 157 ~v~~lv~--aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 157 RVEELVK--AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHh--cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEE
Confidence 3344444 46899999998765234567888887 232 2 3455556788899999999988753
No 392
>PLN02949 transferase, transferring glycosyl groups
Probab=32.79 E-value=2.7e+02 Score=30.99 Aligned_cols=109 Identities=7% Similarity=0.008 Sum_probs=64.2
Q ss_pred CCEEEEEeCC-----HHHHHHHHHHHhhCCCE--EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQD-----SSAAAELKFKLEAMDYI--VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD-----~~~~~~L~~~Le~~Gy~--V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+++|+.+- ....+.|++..++.|.. |.... +.++..+++.. .|+.+. ....+ .-|+.+++.+.
T Consensus 303 ~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~----a~~~v~-~s~~E-~FGivvlEAMA 376 (463)
T PLN02949 303 RPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG----AVAGLH-SMIDE-HFGISVVEYMA 376 (463)
T ss_pred CcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh----CcEEEe-CCccC-CCChHHHHHHH
Confidence 3677788763 33445677777666543 44333 44666666665 355554 33344 56888888886
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|+|+.....-..++..-...|..+|+.. +.++|.++|.+++.
T Consensus 377 ~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 377 AGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred cCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHh
Confidence 678776543322212211111256677764 88999998888765
No 393
>PRK14967 putative methyltransferase; Provisional
Probab=32.67 E-value=3.5e+02 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=33.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
+|..+|-++......+..+...+..+. ...+..+ .+.. ..||+||++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 789999999888888877776666544 2333333 3344 5799999983
No 394
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=32.65 E-value=2.9e+02 Score=27.22 Aligned_cols=98 Identities=12% Similarity=0.173 Sum_probs=52.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh--CCC-------------EEEEECCHHHHHHHhhc-CCCCeeEEEEecCC-CCCCCHH
Q 009017 18 LRVLLLDQDSSAAAELKFKLEA--MDY-------------IVSTFYNENEALSAFSD-KPENFHVAIVEVTT-SNTDGSF 80 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~--~Gy-------------~V~~ass~~eALe~L~~-~~~~pDLVIlDl~m-p~~~dGl 80 (546)
-+..||..-+..++.+.++|.- .|+ .|..+.+.++|++.+.+ ....|-+|..|..- ++ .-.+
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~-~is~ 121 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPN-TISY 121 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS--B-H
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCC-CcCH
Confidence 3678998888888888888862 231 27799999999998865 12468999999883 33 3345
Q ss_pred HHHH-Hh--CCCcEEEE--ecCCChHHHHHHHHcCCCEEEeCCCCH
Q 009017 81 KFLE-TA--KDLPTIIT--SNIHCLSTMMKCIALGAVEFLRKPLSE 121 (546)
Q Consensus 81 ellr-~L--r~iPIIvL--Ss~~d~e~i~~Al~aGAdDYL~KP~~~ 121 (546)
+.++ .| .+-|++++ |+..-.+.+. + ..||++.|+.-
T Consensus 122 ~~lr~~l~~~~~P~LllFGTGwGL~~ev~---~--~~D~iLePI~g 162 (185)
T PF09936_consen 122 AELRRMLEEEDRPVLLLFGTGWGLAPEVM---E--QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHHH--S-EEEEE--TT---HHHH---T--T-SEEB--TTT
T ss_pred HHHHHHHhccCCeEEEEecCCCCCCHHHH---H--hcCeeEccccc
Confidence 4444 44 37777766 4444444332 2 47899999753
No 395
>PRK06769 hypothetical protein; Validated
Probab=32.59 E-value=3.9e+02 Score=25.16 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHhhCCCEEEEECCHHH----------HHHHhhcCCCCeeEEEEecCC---------CCCCCH-HHHHHHhCC--CcE
Q 009017 34 KFKLEAMDYIVSTFYNENE----------ALSAFSDKPENFHVAIVEVTT---------SNTDGS-FKFLETAKD--LPT 91 (546)
Q Consensus 34 ~~~Le~~Gy~V~~ass~~e----------ALe~L~~~~~~pDLVIlDl~m---------p~~~dG-lellr~Lr~--iPI 91 (546)
.+.|++.||.+..+++... +...+.. ..++-++..... |. -+. ..+++++.- --+
T Consensus 37 L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~~~~KP~-p~~~~~~~~~l~~~p~~~ 113 (173)
T PRK06769 37 LQKLKANHIKIFSFTNQPGIADGIATIADFVQELKG--FGFDDIYLCPHKHGDGCECRKPS-TGMLLQAAEKHGLDLTQC 113 (173)
T ss_pred HHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHh--CCcCEEEECcCCCCCCCCCCCCC-HHHHHHHHHHcCCCHHHe
Confidence 3455667999887776542 3444444 335444443321 11 111 223344432 226
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
|++-. ....+..|.++|+..+....
T Consensus 114 i~IGD--~~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 114 AVIGD--RWTDIVAAAKVNATTILVRT 138 (173)
T ss_pred EEEcC--CHHHHHHHHHCCCeEEEEec
Confidence 66654 35788889999999888875
No 396
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=32.59 E-value=2.2e+02 Score=29.24 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred CEEEEEeCCH----HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~----~~~~~L~~~Le~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.|+-++. .....++..|++.|++|+. + .+....+..+.. ..+|+|++...-. +...+++.+
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~~~---~~~~~~~~~ 207 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAA--SGADAVLSTLVGQ---DAVAFNRQF 207 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHH--cCCCEEEEeCCCC---chHHHHHHH
Confidence 3565554443 3345667778888888752 2 234456666776 6799988875433 456777777
Q ss_pred C----CCcEEEEec
Q 009017 87 K----DLPTIITSN 96 (546)
Q Consensus 87 r----~iPIIvLSs 96 (546)
+ ..+++..+.
T Consensus 208 ~~~G~~~~~~~~~~ 221 (333)
T cd06358 208 AAAGLRDRILRLSP 221 (333)
T ss_pred HHcCCCccCceeec
Confidence 6 345554444
No 397
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=32.50 E-value=1.5e+02 Score=27.56 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
.+.+|.++.+.. ....+...... +.+++.+.+.+++++.+.. ...|++|.|.. ....+++......+....
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~--g~~d~~i~~~~-----~~~~~~~~~~~~~~~~~~ 179 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS--GRIDAFIVDES-----TAEYLLKRHPLENIVVIP 179 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT--TSSSEEEEEHH-----HHHHHHHHTTTCEEEEEE
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc--CCeeeeeccch-----hhhhhhhhcccccccccc
Confidence 346888888854 44455554433 6788899999999999999 88999999852 223344444432222211
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
.... .. -..+...+ ...+|...+.+.+....
T Consensus 180 ~~~~--------~~-~~~~~~~~-~~~~l~~~~n~~i~~l~ 210 (225)
T PF00497_consen 180 PPIS--------PS-PVYFAVRK-KNPELLEIFNKAIRELK 210 (225)
T ss_dssp EEEE--------EE-EEEEEEET-TTHHHHHHHHHHHHHHH
T ss_pred cccc--------cc-eeEEeecc-cccHHHHHHHHHHHHHH
Confidence 1000 00 11222333 34677888887777654
No 398
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=32.41 E-value=3.3e+02 Score=25.94 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHhhCCCEEE-EEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHhC--------CCcEEEEe
Q 009017 34 KFKLEAMDYIVS-TFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAK--------DLPTIITS 95 (546)
Q Consensus 34 ~~~Le~~Gy~V~-~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-------lellr~Lr--------~iPIIvLS 95 (546)
.+.+...|..+. .+. +..+.++.+.. ..|.|+++...++ .+| ++.+++++ ++|+++.-
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~g-~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G 173 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPG-FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG 173 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh---hCCEEEEEEECCC-CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 333344555533 222 23444444443 2687777654444 322 34444443 26766554
Q ss_pred cCCChHHHHHHHHcCCCEEEeC
Q 009017 96 NIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~K 117 (546)
+ -+.+.+.++++.||+.++.-
T Consensus 174 G-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 174 G-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred C-CCHHHHHHHHHcCCCEEEEC
Confidence 4 45688889999999998764
No 399
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=32.38 E-value=1.2e+02 Score=34.08 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 48 YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 48 ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
.+..+-+..|.. ...|+|++|..-.....-++++++|+ +++||+ -.-.+.+.+..++++||+.+-
T Consensus 224 ~~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 445555566655 56899999998754222356777777 456554 335678889999999997654
No 400
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.32 E-value=1.4e+02 Score=31.29 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
.+...+...+++.||.+..+.+. .++++.+.. ..+|-||+--...+ ..-.+++... .+|+|++..
T Consensus 75 ~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~--~~vdGiIi~~~~~~-~~~~~~l~~~-~~P~V~i~~ 145 (333)
T COG1609 75 EILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQ--KRVDGLILLGERPN-DSLLELLAAA-GIPVVVIDR 145 (333)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC-HHHHHHHHhc-CCCEEEEeC
Confidence 45566777788899998865543 246677777 67887777542222 1223333322 788888765
No 401
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=32.25 E-value=1.2e+02 Score=33.52 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 12 ~~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+.+...|||+.-.......+.+.|.+.||.|. .+.+..++..++.. ...|..+.++.... ..+.+.+..+.
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~--~~~d~~~~~v~~~~-~~~~d~~~~~~ 147 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV--FFVDLGLQNVEADV-VTAIDILKKLV 147 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc--cccccccceeeecc-ccccchhhhhh
Confidence 3455678999999999999999999999999987 78888888888773 34577777777766 66777666664
No 402
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=32.20 E-value=3.1e+02 Score=25.98 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 31 AELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
..++..++..|+.+...... .++++.+.. ..+|.||+....+. ... ++.+. .+|+|++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iii~~~~~~---~~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS--RRVDGIILAPSRLD---DEL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEecCCcc---hHH-HHHHHHcCCCEEEeccc
Confidence 45566666778887754432 345555555 57898888654333 333 45443 7999988654
No 403
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.17 E-value=1.4e+02 Score=30.82 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=39.5
Q ss_pred CHHHHHHHhC---CCcEEEEecCC------ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 78 GSFKFLETAK---DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 78 dGlellr~Lr---~iPIIvLSs~~------d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
+.+++++++| ++|+|+||=.+ -...+.+|.++|+++++.-.+..+|....+.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~ 138 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLIS 138 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHH
Confidence 4577778876 68988887543 3557889999999999999888877655443
No 404
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.98 E-value=1.2e+02 Score=34.27 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=42.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC-Cc--EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD-LP--TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~-iP--IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+-.+.|-+ ...|+|++|..-.....-++++++||. .| .|+..+-.+.+....++++|||....
T Consensus 248 ~~~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 33444444544 468999999853221122478888872 33 33344566788999999999998755
No 405
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=31.95 E-value=1.3e+02 Score=33.34 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
+.+..++. ..+|+|.+|..-......++++++|+ +++||+ ..-.+.+.+..++++||+.+.
T Consensus 227 ~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 44444444 36899999986544234567777776 456554 445678889999999998774
No 406
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=31.84 E-value=1.8e+02 Score=28.50 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=45.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecC-CCCCCCHHHHHHHhC
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVT-TSNTDGSFKFLETAK 87 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~as-------s~~eALe~L~~~~~~pDLVIlDl~-mp~~~dGlellr~Lr 87 (546)
|||-|-|...++.++..-++.|-+|...+ ++++.++++.+.+..|=+|.+|-. ..+...|-+.++.+.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHH
Confidence 56667777777778877778899988655 688999999874344445555532 222134556666653
No 407
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.83 E-value=3e+02 Score=28.22 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=57.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE--EECCH-HHHHHHhhcCCCCeeEEEE-ec-CCCCC-----CCHHHHHHHhC--
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVS--TFYNE-NEALSAFSDKPENFHVAIV-EV-TTSNT-----DGSFKFLETAK-- 87 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~--~ass~-~eALe~L~~~~~~pDLVIl-Dl-~mp~~-----~dGlellr~Lr-- 87 (546)
|+|.|=-....+.+...+++.|...+ ++.+. .+=++.+.. ...+.|-+ .. ...+. .+..++++.++
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~--~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIAS--HASGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 55666555566667777788887744 22222 344444444 33444422 21 11110 12345777776
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
++||++=.+-.+.+.+.++++. ||+.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 7899887777788888888875 99999864
No 408
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.80 E-value=96 Score=31.42 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=39.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC--C---CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM--D---YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~--G---y~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
.+|-+||=|+.+.+..++++... + =++. ...++...++...+ ..||+||+|+.-|.
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPD 162 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTT
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCC
Confidence 57999999999999988887642 1 1232 67777776666554 37999999998775
No 409
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.72 E-value=2.3e+02 Score=27.34 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ ..++++.+.. ..+|.||+...... .. ..+.+. .+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~---~~~~~~~~ipvv~~~~ 85 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR--KQADGIILLDGSLP-PT---ALTALAKLPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-HH---HHHHHhcCCCEEEEec
Confidence 446677777888999875543 2244555666 57897777432222 11 233333 789998753
No 410
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=31.62 E-value=1.8e+02 Score=27.82 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=56.8
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC------CCcEEEEecCCC
Q 009017 32 ELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNIHC 99 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr------~iPIIvLSs~~d 99 (546)
.+...|+..||.+.. +..+...++.+.. ..||.|-+|..+... .....+++.+. .+. |+.++-.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 355556778998764 5566777778877 679999999654320 12234444442 344 45677788
Q ss_pred hHHHHHHHHcCCCE----EEeCCCCH
Q 009017 100 LSTMMKCIALGAVE----FLRKPLSE 121 (546)
Q Consensus 100 ~e~i~~Al~aGAdD----YL~KP~~~ 121 (546)
.+....+.+.|++. |+.||...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 88888999999842 35566543
No 411
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.56 E-value=1.8e+02 Score=28.81 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCEEEEECCH--HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE--NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~--~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+-..... ...++.++ .+|+|++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVS--ALVDGFIVYGVPRD----DPLVAALLRRGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHh--cCCCEEEEeCCCCC----hHHHHHHHHcCCCEEEEec
Confidence 4566778888899998765543 456666666 67887777432212 24455554 689988854
No 412
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=31.54 E-value=2.4e+02 Score=27.14 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCEEEEECC--H---HH-HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh--CCCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN--E---NE-ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass--~---~e-ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L--r~iPIIvLSs 96 (546)
+...+...+++.||.+..+.. . .+ +.+.+.. ..+|.||+...... ... ++.+ ..+|+|++-.
T Consensus 21 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~~---~~~~~~~~ipvV~~~~ 90 (268)
T cd06271 21 FLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVES--GLVDGVIISRTRPD-DPR---VALLLERGFPFVTHGR 90 (268)
T ss_pred HHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHc--CCCCEEEEecCCCC-ChH---HHHHHhcCCCEEEECC
Confidence 345667778888999775432 1 12 3334444 46887777533222 222 3333 3789998843
No 413
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=31.47 E-value=1.1e+02 Score=25.39 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=41.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~ 127 (546)
.+.+.++.+... ..+.+..+|+. + .-++.++.. ++|||.+.+..... ...++..+++.+.|.+.
T Consensus 15 ~a~~~L~~~~~~-~~~~l~~vDI~--~---d~~l~~~Y~~~IPVl~~~~~~~~~---------~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 15 EAKEILEEVAAE-FPFELEEVDID--E---DPELFEKYGYRIPVLHIDGIRQFK---------EQEELKWRFDEEQLRAW 79 (81)
T ss_dssp HHHHHHHHCCTT-STCEEEEEETT--T---THHHHHHSCTSTSEEEETT-GGGC---------TSEEEESSB-HHHHHHH
T ss_pred HHHHHHHHHHhh-cCceEEEEECC--C---CHHHHHHhcCCCCEEEEcCccccc---------ccceeCCCCCHHHHHHH
Confidence 344455544332 46889999996 2 234555555 89999887632211 15678889999999887
Q ss_pred HH
Q 009017 128 WQ 129 (546)
Q Consensus 128 I~ 129 (546)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 63
No 414
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=31.44 E-value=2.4e+02 Score=26.97 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=56.8
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC------CCcEEEEecCCC
Q 009017 32 ELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNIHC 99 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~~--ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr------~iPIIvLSs~~d 99 (546)
.....|++.||.+.. +..+..-+..+.. ..+|.|-+|..+-.. .....+++.+. .+. |+.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 445667788998764 5566677778877 679999999754320 11234444442 344 44677778
Q ss_pred hHHHHHHHHcCCC---E-EEeCCCCH
Q 009017 100 LSTMMKCIALGAV---E-FLRKPLSE 121 (546)
Q Consensus 100 ~e~i~~Al~aGAd---D-YL~KP~~~ 121 (546)
.+....+.+.|++ + |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 8888889999986 3 45666553
No 415
>PLN02939 transferase, transferring glycosyl groups
Probab=31.37 E-value=3.4e+02 Score=33.30 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=62.6
Q ss_pred CEEEEEeCCH--HHHHHHHHHHhhCCC--EEEEECCHHH--HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 18 LRVLLLDQDS--SAAAELKFKLEAMDY--IVSTFYNENE--ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 18 ~rILIVDDD~--~~~~~L~~~Le~~Gy--~V~~ass~~e--ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
.+++|+.+.+ .....+..+..+.+. .|.......+ +-.++.. .|++|+=-. -+ .-|+..++.++ .+|
T Consensus 809 vqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAa----ADIFLmPSr-~E-PfGLvqLEAMAyGtP 882 (977)
T PLN02939 809 GQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAA----SDMFIIPSM-FE-PCGLTQMIAMRYGSV 882 (977)
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHh----CCEEEECCC-cc-CCcHHHHHHHHCCCC
Confidence 5677776543 333455555554432 2433222222 2234443 588777433 34 46788888887 566
Q ss_pred EEEEecCCChHHHHHH-----HHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKC-----IALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~A-----l~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|+.....-.+.+... ...|..+|+..|.+.++|..+|.+++.
T Consensus 883 PVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 883 PIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred EEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 6654322222322211 123688999999999999999887765
No 416
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=31.23 E-value=4.8e+02 Score=25.01 Aligned_cols=84 Identities=14% Similarity=-0.013 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCCEEEEE-CCH----HHHHHHhhcCCCCeeEEEEecCCCCC---CCHHHHHHHhC---CCcEEEEecCC
Q 009017 30 AAELKFKLEAMDYIVSTF-YNE----NEALSAFSDKPENFHVAIVEVTTSNT---DGSFKFLETAK---DLPTIITSNIH 98 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~a-ss~----~eALe~L~~~~~~pDLVIlDl~mp~~---~dGlellr~Lr---~iPIIvLSs~~ 98 (546)
...+.+..++.|..+... .+. +++..... ...|+|-+.-...+. ..+++.++.++ ..+.|++++--
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~---~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI 167 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE---LGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI 167 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH---cCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc
Confidence 345556666778776533 232 44444433 357888775321110 12344455444 33455556767
Q ss_pred ChHHHHHHHHcCCCEEEe
Q 009017 99 CLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 99 d~e~i~~Al~aGAdDYL~ 116 (546)
+.+.+.+++++||+.++.
T Consensus 168 ~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 168 NLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 888899999999998766
No 417
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=31.19 E-value=2.4e+02 Score=29.32 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=45.4
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc---CCC--CeeEEEEecCCCCCCCHHH-HHHHhC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD---KPE--NFHVAIVEVTTSNTDGSFK-FLETAK 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~---~~~--~pDLVIlDl~mp~~~dGle-llr~Lr 87 (546)
++++.++||-.-..-+...+.+.|.+.||+++.+.--++-|+.+.. +.. .++++-+|+. + .+.++ +...++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs--~-~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLS--D-PEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCC--C-hhHHHHHHHHHH
Confidence 3456789999999999999999999999998855544554443322 002 2455556654 4 33444 344555
No 418
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=31.16 E-value=4.8e+02 Score=26.67 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~ 127 (546)
+.++....+.. .|++|+=. ..+ .-|+.+++.+. .+|||+ +.... ..+.+..+..+++..+.+.++|.+.
T Consensus 292 ~~~~~~~~~~~----adi~l~ps-~~e-~~~~~l~Ea~a~G~Pvi~-s~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~ 361 (398)
T cd03800 292 SREDLPALYRA----ADVFVNPA-LYE-PFGLTALEAMACGLPVVA-TAVGG---PRDIVVDGVTGLLVDPRDPEALAAA 361 (398)
T ss_pred CHHHHHHHHHh----CCEEEecc-ccc-ccCcHHHHHHhcCCCEEE-CCCCC---HHHHccCCCCeEEeCCCCHHHHHHH
Confidence 34555555555 47766532 333 34667888876 889875 33332 3344667778899999999999999
Q ss_pred HHHHHH
Q 009017 128 WQHVVH 133 (546)
Q Consensus 128 I~~vlr 133 (546)
|..++.
T Consensus 362 i~~l~~ 367 (398)
T cd03800 362 LRRLLT 367 (398)
T ss_pred HHHHHh
Confidence 888765
No 419
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.16 E-value=2.9e+02 Score=27.36 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEE--Ee-cCCCCCCCHHHHHHHhC------CC-cEEEEecCCChHHH
Q 009017 36 KLEAMDYI--VSTFYNENEALSAFSDKPENFHVAI--VE-VTTSNTDGSFKFLETAK------DL-PTIITSNIHCLSTM 103 (546)
Q Consensus 36 ~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVI--lD-l~mp~~~dGlellr~Lr------~i-PIIvLSs~~d~e~i 103 (546)
.|++.|+. ++.+-+..+|+...... .+.|= ++ +.--+ .||+++++.+. +. .-|+..+..+...+
T Consensus 96 ~L~~~gi~v~~T~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g-~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei 171 (211)
T cd00956 96 KLSEEGIKTNVTAIFSAAQALLAAKAG---ATYVSPFVGRIDDLG-GDGMELIREIRTIFDNYGFDTKILAASIRNPQHV 171 (211)
T ss_pred HHHHcCCceeeEEecCHHHHHHHHHcC---CCEEEEecChHhhcC-CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHH
Confidence 34445554 33566777777666652 23211 11 11124 68998888764 32 24445666788889
Q ss_pred HHHHHcCCCEEEeC
Q 009017 104 MKCIALGAVEFLRK 117 (546)
Q Consensus 104 ~~Al~aGAdDYL~K 117 (546)
.+++.+|++-+-.-
T Consensus 172 ~~a~~~Gad~vTv~ 185 (211)
T cd00956 172 IEAALAGADAITLP 185 (211)
T ss_pred HHHHHcCCCEEEeC
Confidence 99999998766443
No 420
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.13 E-value=3.1e+02 Score=26.52 Aligned_cols=91 Identities=9% Similarity=0.112 Sum_probs=53.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE-EECCH-HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecC
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVS-TFYNE-NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~-~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~ 97 (546)
|+|+.-...+...+...|.+.++.|. .+.+. .+....++. ....+|..|+. +--.+.+.++++-+|++...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~--~g~~vv~~d~~-----~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQA--LGAEVVEADYD-----DPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHH--TTTEEEES-TT------HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhc--ccceEeecccC-----CHHHHHHHHcCCceEEeecC
Confidence 67777777777777777777889887 45544 344556665 44567766653 23455667776554444332
Q ss_pred ---CC-----hHHHHHHHHcCCCEEEeC
Q 009017 98 ---HC-----LSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ---~d-----~e~i~~Al~aGAdDYL~K 117 (546)
.. ...+..|.++|+.-|+.-
T Consensus 74 ~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 74 PSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp CSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred cchhhhhhhhhhHHHhhhccccceEEEE
Confidence 11 224556677887777643
No 421
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.03 E-value=3.9e+02 Score=27.04 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecC
Q 009017 31 AELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNI 97 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~ 97 (546)
..+.+.+++.|..+.. + .+....+..+.. ..+|+||+...- .....+++.++ ..+++.++..
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~--~~~dav~~~~~~---~~a~~~i~~~~~~G~~~~~~~~~~~ 226 (336)
T cd06326 154 AGVEKALAARGLKPVATASYERNTADVAAAVAQLAA--ARPQAVIMVGAY---KAAAAFIRALRKAGGGAQFYNLSFV 226 (336)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh--cCCCEEEEEcCc---HHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4455566666655331 1 345555555555 457877775431 23455666654 4565555443
No 422
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.97 E-value=2.8e+02 Score=29.57 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=42.0
Q ss_pred CEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 009017 18 LRVLLLDQDSSAA-----AELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (546)
Q Consensus 18 ~rILIVDDD~~~~-----~~L~~~Le~~Gy~V~~as---------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell 83 (546)
.|+|||-|..... +.+...|+..|.++..+. +..++.+.+++ ..+|+||- +.+ ..-+++.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG---IGG-GSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE---eCC-chHHHHH
Confidence 5899998876522 568888888887766553 24567777777 67898776 334 5556666
Q ss_pred HH
Q 009017 84 ET 85 (546)
Q Consensus 84 r~ 85 (546)
+.
T Consensus 100 K~ 101 (357)
T cd08181 100 KA 101 (357)
T ss_pred HH
Confidence 53
No 423
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=30.96 E-value=1.5e+02 Score=25.26 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
.+|.-+|=++...+..+..+...+. ++. ...+..+..+.+.. ..+|+||+|.-..
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNPPYG 81 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--STT
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECCCCc
Confidence 5899999999999999999888765 243 56666666655666 6899999987543
No 424
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.92 E-value=2e+02 Score=29.26 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=48.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHc-----C-CCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAL-----G-AVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~a-----G-AdDYL~ 116 (546)
+..+.++.+... .-=.+|++|+.-.+++.| +++++.++ ++|||+--+-.+.+++.++.+. | +++.|.
T Consensus 145 ~~~e~~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 145 DPVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred CHHHHHHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 345666666552 123799999987664455 56777775 7899998888888999888886 5 887765
No 425
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.90 E-value=3.8e+02 Score=27.04 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHhhcCCCCeeEEEE-ecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcC-CCEEEe------C
Q 009017 51 NEALSAFSDKPENFHVAIV-EVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALG-AVEFLR------K 117 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIl-Dl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aG-AdDYL~------K 117 (546)
.+..+.+.+ ..+|.|++ |+.--+.+.| ++++++++ .+|||+..+-.+.+.+.++++.| |+..+. .
T Consensus 158 ~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 445555555 45675444 4332111122 57777776 78999988889999999999988 888544 3
Q ss_pred CCCHHHHHHH
Q 009017 118 PLSEDKLRNL 127 (546)
Q Consensus 118 P~~~eeL~~~ 127 (546)
-++..++...
T Consensus 236 ~~~~~~~~~~ 245 (254)
T TIGR00735 236 EITIGEVKEY 245 (254)
T ss_pred CCCHHHHHHH
Confidence 4555554443
No 426
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=30.76 E-value=2.8e+02 Score=27.96 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEE---ecCCCCCCCHHHHHHHhC-------CCcEEEEecCCChHH
Q 009017 35 FKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIV---EVTTSNTDGSFKFLETAK-------DLPTIITSNIHCLST 102 (546)
Q Consensus 35 ~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIl---Dl~mp~~~dGlellr~Lr-------~iPIIvLSs~~d~e~ 102 (546)
+.|...|+. ++.+-+..+|+...... . +.|=- -+.-.+ .||.++++.+. .-.-|+..+..+...
T Consensus 99 ~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aG--a-~yvsPyvgRi~d~g-~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~ 174 (222)
T PRK12656 99 KTLKAEGYHITATAIYTVFQGLLAIEAG--A-DYLAPYYNRMENLN-IDSNAVIGQLAEAIDRENSDSKILAASFKNVAQ 174 (222)
T ss_pred HHHHHCCCceEEeeeCCHHHHHHHHHCC--C-CEEecccchhhhcC-CCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHH
Confidence 345566665 34666777777776652 1 32211 112224 68888887764 123445566678889
Q ss_pred HHHHHHcCCCEEEe
Q 009017 103 MMKCIALGAVEFLR 116 (546)
Q Consensus 103 i~~Al~aGAdDYL~ 116 (546)
+.++..+|++.+-.
T Consensus 175 v~~a~~~G~d~vTv 188 (222)
T PRK12656 175 VNKAFALGAQAVTA 188 (222)
T ss_pred HHHHHHcCCCEEec
Confidence 99999999765544
No 427
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.63 E-value=1.9e+02 Score=30.82 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHH
Q 009017 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKC 106 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~A 106 (546)
....|.+..++.|..+.+..-..++++++.+ ..++ ++=+.-.+ +.-+.|++.+. ..|||+=|+-.+.+.+..|
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~--~~v~--~~KIaS~~-~~n~pLL~~~A~~gkPvilStGmatl~Ei~~A 151 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLED--LGVP--RFKIPSGE-ITNAPLLKKIARFGKPVILSTGMATLEEIEAA 151 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCC--EEEECccc-ccCHHHHHHHHhcCCcEEEECCCCCHHHHHHH
Confidence 3445666666778887655555666788776 3344 44444455 66799999986 7999998888776666555
Q ss_pred H
Q 009017 107 I 107 (546)
Q Consensus 107 l 107 (546)
+
T Consensus 152 v 152 (329)
T TIGR03569 152 V 152 (329)
T ss_pred H
Confidence 4
No 428
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=30.61 E-value=2.7e+02 Score=27.28 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=46.5
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC--------CHHHHHHHh---CC--CcEEEEecCCChHHHHH---HHHcC
Q 009017 47 FYNENEALSAFSDKPENFHVAIVEVTTSNTD--------GSFKFLETA---KD--LPTIITSNIHCLSTMMK---CIALG 110 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pDLVIlDl~mp~~~--------dGlellr~L---r~--iPIIvLSs~~d~e~i~~---Al~aG 110 (546)
-.+..+.++.+.. ..+|.|++|++-.... +-.+++..+ +. ..+++=....+.....+ ++..|
T Consensus 7 p~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 7 PANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp ESTSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred eCCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccC
Confidence 3444566666666 6799999999642200 011233333 22 35555555556666666 99999
Q ss_pred CCEEEeCCCC-HHHHHHHHH
Q 009017 111 AVEFLRKPLS-EDKLRNLWQ 129 (546)
Q Consensus 111 AdDYL~KP~~-~eeL~~~I~ 129 (546)
+++++.--+. .+++...++
T Consensus 85 ~~gI~lP~ves~~~~~~~~~ 104 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVA 104 (221)
T ss_dssp SSEEEETT--SHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHH
Confidence 9998776564 555555443
No 429
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.52 E-value=4.8e+02 Score=27.04 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=46.9
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCC----CCCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~----~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.+.++|..+... ..|.|++.-+-.. ....++++..++ ++|||.-.+-.+...+.+++.+||+....
T Consensus 179 ~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 179 GILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred ecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34666776655544 5787777543211 023355665553 49999888888999999999999998876
Q ss_pred C
Q 009017 117 K 117 (546)
Q Consensus 117 K 117 (546)
=
T Consensus 256 g 256 (299)
T cd02809 256 G 256 (299)
T ss_pred c
Confidence 4
No 430
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=30.45 E-value=1.3e+02 Score=35.43 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=47.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHh--CCCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETA--KDLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~--mp~~~dGlellr~L--r~iPI 91 (546)
.+.+|+|||-...+...+..+|++.|+++.++.... ..+.+.. ..+|.||+-=. -+...+-.++++.+ +.+||
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAALARGLPV 591 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHHHCCCCE
Confidence 467999999888788899999999999987664332 1222333 35888877211 11101223445443 27888
Q ss_pred EEEe
Q 009017 92 IITS 95 (546)
Q Consensus 92 IvLS 95 (546)
+-+.
T Consensus 592 LGIC 595 (717)
T TIGR01815 592 FGVC 595 (717)
T ss_pred EEEC
Confidence 8665
No 431
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=30.20 E-value=2.3e+02 Score=27.69 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC--CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr--~iPIIvLSs 96 (546)
.+...+.+.+++.||.+..+.. ..++++.+.. ..+|.||+-....... ...+.++.+. .+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~ 91 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLS--QGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINA 91 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEec
Confidence 3445667777788999876543 2345666666 5799888743222100 0124455553 789998854
No 432
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=30.19 E-value=3.8e+02 Score=26.81 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=45.9
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 47 FYNENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+.+.+++.+... ...|.|.+.--.+.. -.|+++++++. .+||+.+-+- +.+.+.+++++||+++-.
T Consensus 118 ~~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAv 191 (221)
T PRK06512 118 LRDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVAL 191 (221)
T ss_pred CCCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEE
Confidence 456777766543 357888886543110 23677887664 7999999875 677888999999998843
No 433
>PRK10307 putative glycosyl transferase; Provisional
Probab=30.06 E-value=6.8e+02 Score=26.41 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH----HHHHHHhC-CC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI-VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS----FKFLETAK-DL 89 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dG----lellr~Lr-~i 89 (546)
.+++||.+.+ ..+.++++.++.|.. |.... +.++..+++.. .|+.++=.. .+ ..+ ..+++.+. .+
T Consensus 260 ~~l~ivG~g~-~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~----aDi~v~ps~-~e-~~~~~~p~kl~eama~G~ 332 (412)
T PRK10307 260 LIFVICGQGG-GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKM----ADCHLLPQK-AG-AADLVLPSKLTNMLASGR 332 (412)
T ss_pred eEEEEECCCh-hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHh----cCEeEEeec-cC-cccccCcHHHHHHHHcCC
Confidence 6788887765 345566666655443 44332 45566666655 466554322 22 211 23445444 89
Q ss_pred cEEEEecCCC-hHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d-~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||....... ...+ +. + .+++..|.+.++|.++|..++.
T Consensus 333 PVi~s~~~g~~~~~~---i~-~-~G~~~~~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 333 NVVATAEPGTELGQL---VE-G-IGVCVEPESVEALVAAIAALAR 372 (412)
T ss_pred CEEEEeCCCchHHHH---Hh-C-CcEEeCCCCHHHHHHHHHHHHh
Confidence 9976543222 2222 23 3 7899999999999999988764
No 434
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=30.05 E-value=1.7e+02 Score=30.43 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=49.0
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEecCC----CC--CCCHHHHHHHhC---CCcEEEEecC-CChHHHHHHHHcCCCEEEe
Q 009017 47 FYNENEALSAFSDKPENFHVAIVEVTT----SN--TDGSFKFLETAK---DLPTIITSNI-HCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pDLVIlDl~m----p~--~~dGlellr~Lr---~iPIIvLSs~-~d~e~i~~Al~aGAdDYL~ 116 (546)
+++.++|.+++.. ..+|.+-+.+.- .. ..=++++++.|+ ++|+++.-+. .+.+.+.++++.|++.+=.
T Consensus 152 ~t~~eea~~f~~~--tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 152 LADPDEAEQFVKE--TGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred cCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 5688999999975 468887755211 10 023588888887 7999988643 4567788999999988755
Q ss_pred C
Q 009017 117 K 117 (546)
Q Consensus 117 K 117 (546)
-
T Consensus 230 ~ 230 (282)
T TIGR01859 230 D 230 (282)
T ss_pred C
Confidence 3
No 435
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=30.00 E-value=1.1e+02 Score=32.06 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=43.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSNTDGS 79 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~a-------ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG 79 (546)
+|||+.....+...|...|. .+++|+.. .+.+...+.+++ ..||+||--.-+.. .|.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~--~~PDvVIn~AAyt~-vD~ 65 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE--TRPDVVINAAAYTA-VDK 65 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh--hCCCEEEECccccc-ccc
Confidence 59999999999999999998 56777643 355667777777 67999998776665 443
No 436
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=29.95 E-value=2.5e+02 Score=27.69 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=50.4
Q ss_pred ECCHHHHHHHhhcCCCCe-eEEEEecCCCCCC--CHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 47 FYNENEALSAFSDKPENF-HVAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 47 ass~~eALe~L~~~~~~p-DLVIlDl~mp~~~--dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+..++++.+.. ..+ .++|+|+.-.+.. .-+++++.+. .+|+++=.+-.+.+.+.+++..|++..+.-
T Consensus 29 ~~dp~~~a~~~~~--~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNA--KGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3478888888866 445 4889999765311 2356777775 688887777778888889999999887765
No 437
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.94 E-value=2.3e+02 Score=27.31 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
.+...+.+.+++.||.+....+ .+ +.++.+.. ..+|.||+...... ..+++.++ .+|||++..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgii~~~~~~~----~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLAR--QKVDGIILLATTIT----DEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC----HHHHHHHhcCCCCEEEEec
Confidence 3455666777788999875432 22 34455555 57898887532211 34555554 689998853
No 438
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=29.70 E-value=1.8e+02 Score=20.30 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=32.9
Q ss_pred CccchhhhhhHHHHHHHhcC-CCCChHHHHHHhCCCCccHHHHHHHHHH
Q 009017 307 NSCGNKANRKKMKAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQK 354 (546)
Q Consensus 307 ~~~~~~lh~~f~~av~~lg~-~~a~p~~i~~~m~v~~l~~~~v~shlqk 354 (546)
..||.+=...|+.++++.|. + =+.|-+.|+ +=|-..|+.+..+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~---w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN---WEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcC--CCCHHHHHHHHHH
Confidence 47999999999999999994 3 456666665 7777777776544
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.63 E-value=3.2e+02 Score=32.69 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=58.4
Q ss_pred CEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC--CCCCCHHHHHHHhC-----
Q 009017 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--SNTDGSFKFLETAK----- 87 (546)
Q Consensus 18 ~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m--p~~~dGlellr~Lr----- 87 (546)
.+|.+|+-|..- .+.++.+-+..|..+..+.+..++.+.+..- ..+|+||+|.-= +....-.+.+..+.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 478888877542 3556666666777777777887776666553 357999999732 11011133333332
Q ss_pred CCcEEEEecCCChHH---HHHHHHc----CCCEEEeCCCCH
Q 009017 88 DLPTIITSNIHCLST---MMKCIAL----GAVEFLRKPLSE 121 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~---i~~Al~a----GAdDYL~KP~~~ 121 (546)
.-.++++++....+. +.+.+.. +.+.+|.--+|.
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 234556655544333 3345542 567776654553
No 440
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.62 E-value=4.2e+02 Score=29.36 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~as---s~----~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|++|+-|..- .+.+...-+..|..+..+. +. .++++.+.. ..+|+||+|..
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTa 191 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTA 191 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 4689999988432 2334444445565555432 23 244555555 56999999974
No 441
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=29.62 E-value=2.8e+02 Score=27.08 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass----~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+.+.+.+.+++.||.+..+.. ...+.+.+.. ..+|.||+.-.. . + ...++.+. .+|||++..
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~--~~~dgiii~~~~-~--~-~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLAS--GRADGVILIGQH-D--Q-DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHh--CCCCEEEEeCCC-C--C-hHHHHHHHhCCCCEEEECC
Confidence 345577778888999775432 2234555555 578977763221 1 2 23455554 799998854
No 442
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=29.58 E-value=2.4e+02 Score=27.24 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.++..||.+..+.. ..++++.+.. ..+|-||+.-.... .++++.+. .+|+|++..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~~~~~~ipvv~~~~ 86 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLS--RRPAGLILTGLEHT----ERTRQLLRAAGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHH--cCCCEEEEeCCCCC----HHHHHHHHhcCCCEEEEec
Confidence 335566777788999876543 2345666666 57897777533222 23444443 689998843
No 443
>PLN02823 spermine synthase
Probab=29.57 E-value=1.3e+02 Score=32.21 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=37.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM-----DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~-----Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
.+|.+||=|+.+.+..++.+... +-++. ...++.+.++.. . ..||+||+|+.-|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~--~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-D--EKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-C--CCccEEEecCCCc
Confidence 57999999999999998887532 12333 456666655432 2 5799999997544
No 444
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.57 E-value=3.5e+02 Score=28.20 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=49.5
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecC--CC---C-CCCHHHHHHHhC---CCcEEEEecCC-ChHHHHHHHHcCCCEEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVT--TS---N-TDGSFKFLETAK---DLPTIITSNIH-CLSTMMKCIALGAVEFL 115 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~--mp---~-~~dGlellr~Lr---~iPIIvLSs~~-d~e~i~~Al~aGAdDYL 115 (546)
.+++.++|.++.+. ...|.+-+.+. -+ + ..-|++.+++|+ ++|++++-+.. ..+.+.++++.|++.+=
T Consensus 151 s~t~~eea~~f~~~--tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEE--TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHh--hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 46789999998866 46788877331 11 1 023688888886 79999887443 66778899999998775
Q ss_pred e
Q 009017 116 R 116 (546)
Q Consensus 116 ~ 116 (546)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 445
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.53 E-value=5.7e+02 Score=25.40 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=41.7
Q ss_pred EEEECCHHHHHHHhhcC-CCCeeEEEEecCCCCCCCHHHHHHHhC-CCc-E-EEEecCCChHHHHHHHHcCCCEEEeCCC
Q 009017 44 VSTFYNENEALSAFSDK-PENFHVAIVEVTTSNTDGSFKFLETAK-DLP-T-IITSNIHCLSTMMKCIALGAVEFLRKPL 119 (546)
Q Consensus 44 V~~ass~~eALe~L~~~-~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP-I-IvLSs~~d~e~i~~Al~aGAdDYL~KP~ 119 (546)
|+...+.+++++..+.- ...+.+|=+.++. .+.++.+++++ ..| + |-.-.-.+.+.+.+++++||+ |++-|.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~-FivsP~ 88 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQ-FIVSPG 88 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCC-EEECCC
Confidence 34455555555443220 0234444444443 33666676665 222 2 222234577888999999986 555565
Q ss_pred CHHHHHH
Q 009017 120 SEDKLRN 126 (546)
Q Consensus 120 ~~eeL~~ 126 (546)
...++.+
T Consensus 89 ~~~~v~~ 95 (204)
T TIGR01182 89 LTPELAK 95 (204)
T ss_pred CCHHHHH
Confidence 5555554
No 446
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.52 E-value=3.4e+02 Score=25.90 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-------HHHHHhCCC
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-------KFLETAKDL 89 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl-------ellr~Lr~i 89 (546)
|.|-++.........+.++..|..+.. ..+..+.++.+.. ..|.|+++..-++ ..|- +.+++++..
T Consensus 83 v~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g-~tg~~~~~~~~~~i~~i~~~ 158 (210)
T TIGR01163 83 ITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPG-FGGQKFIPDTLEKIREVRKM 158 (210)
T ss_pred EEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCC-CCcccccHHHHHHHHHHHHH
Q ss_pred -------cEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 90 -------PTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 90 -------PIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.-|++.+--..+.+.++++.||+.++.
T Consensus 159 ~~~~~~~~~i~v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 159 IDENGLSILIEVDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred HHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEE
No 447
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=29.46 E-value=1.7e+02 Score=29.09 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 30 AAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass-----~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
...+...+++.||.+..+.. ..+.++.+.. ..+|.||+--.... ..-.++++...++|+|++..
T Consensus 21 ~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 21 WEGLERAAKELGIEYKYVESKSDADYEPNLEQLAD--AGYDLIVGVGFLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHh--CCCCEEEEcCcchH-HHHHHHHHHCCCCEEEEEec
Confidence 34566777788999776532 2345566666 67888887321111 11122333333689888854
No 448
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=29.27 E-value=90 Score=31.20 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHH
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEA 53 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eA 53 (546)
|++|.|||=..-....+...|++.|+++....+.++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 3689999999999999999999999999999988874
No 449
>PRK09526 lacI lac repressor; Reviewed
Probab=29.17 E-value=2.1e+02 Score=29.24 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCEEEEECC----H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHhCCCcEEEEe
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN----E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAKDLPTIITS 95 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass----~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~Lr~iPIIvLS 95 (546)
.+...+.+.+.+.||.+..+.. . .+.++.+.. ..+|-||+...... +.+. ++.....+|+|++-
T Consensus 80 ~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~--~~vdGiii~~~~~~--~~~~~~~~~~~~iPvV~~d 151 (342)
T PRK09526 80 QIAAAIKSRADQLGYSVVISMVERSGVEACQAAVNELLA--QRVSGVIINVPLED--ADAEKIVADCADVPCLFLD 151 (342)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHh--cCCCEEEEecCCCc--chHHHHHhhcCCCCEEEEe
Confidence 3456677778888999775431 1 245566666 57898888532222 2222 22222478998874
No 450
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=29.15 E-value=1e+02 Score=31.79 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=32.6
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEECCHHHHHH------Hh-----hcCCCCeeEEEEecC
Q 009017 19 RVLLLD--QDSSAAAELKFKLEAMDYIVSTFYNENEALS------AF-----SDKPENFHVAIVEVT 72 (546)
Q Consensus 19 rILIVD--DD~~~~~~L~~~Le~~Gy~V~~ass~~eALe------~L-----~~~~~~pDLVIlDl~ 72 (546)
+|+|+. ..-...+.+...+++.||++..+.-.+..+. .+ .. ..+|+||.-++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~~~~ 66 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKL--PHFDAVIPRIG 66 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCccc--CCCCEEEEcCC
Confidence 455554 5546668899999999999887763322111 11 11 25899998554
No 451
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=29.13 E-value=4.9e+02 Score=28.11 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=57.5
Q ss_pred CEEEEEeC-CHHHHHHHHHHHhhCCCEE--EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 18 LRVLLLDQ-DSSAAAELKFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 18 ~rILIVDD-D~~~~~~L~~~Le~~Gy~V--~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
.+++|+.+ +....+.+.++.++..-++ ...-+.+.+-.++.. .|++|+=. .-+ .-|+..++.+. .+|+|+
T Consensus 326 ~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS-~~E-~~gl~~lEAma~G~pvI~ 399 (476)
T cd03791 326 GQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAG----ADFFLMPS-RFE-PCGLTQMYAMRYGTVPIV 399 (476)
T ss_pred cEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh----CCEEECCC-CCC-CCcHHHHHHhhCCCCCEE
Confidence 45555554 3334445555544422222 222232223333333 47776532 223 45677777776 677764
Q ss_pred EecCCChHHHHHHHHcCC------CEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGA------VEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGA------dDYL~KP~~~eeL~~~I~~vlr 133 (546)
. ...... +.+..|. .+|+..|.+.++|..+|.+++.
T Consensus 400 ~-~~gg~~---e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 400 R-ATGGLA---DTVIDYNEDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred C-cCCCcc---ceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 3 322211 1223333 8999999999999999888765
No 452
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.97 E-value=3.4e+02 Score=27.05 Aligned_cols=90 Identities=21% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC---c-EEE-EecCCChHHHHHHH
Q 009017 35 FKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL---P-TII-TSNIHCLSTMMKCI 107 (546)
Q Consensus 35 ~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i---P-IIv-LSs~~d~e~i~~Al 107 (546)
+.|.+.+.- |+...+.++++...+.- ..-.+=++.+.+.. -+.++.++.|+ .. | +++ .-.-.+.+.+.+|+
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~-~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTN-PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCC-ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 445555533 44666666666554320 01123344555544 55777777775 22 2 322 23345788899999
Q ss_pred HcCCCEEEeCCCCHHHHHHH
Q 009017 108 ALGAVEFLRKPLSEDKLRNL 127 (546)
Q Consensus 108 ~aGAdDYL~KP~~~eeL~~~ 127 (546)
++||+ |++-|.-..++++.
T Consensus 86 ~aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 86 LAGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred HcCCC-EEECCCCCHHHHHH
Confidence 99986 55567666666653
No 453
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.96 E-value=1.1e+02 Score=30.24 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=29.5
Q ss_pred EecCCCCCCCHHHHHHHhC-C--CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 69 VEVTTSNTDGSFKFLETAK-D--LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 69 lDl~mp~~~dGlellr~Lr-~--iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
+.+.+.. .+.++.++.++ . --+|=.-.-.+.+.+.+|+++||+..+. |.-..++.+
T Consensus 37 iEiT~~t-~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-P~~~~~v~~ 95 (196)
T PF01081_consen 37 IEITLRT-PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-PGFDPEVIE 95 (196)
T ss_dssp EEEETTS-TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE-SS--HHHHH
T ss_pred EEEecCC-ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC-CCCCHHHHH
Confidence 3444444 45677776665 1 1123233345788899999999864444 554455554
No 454
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=28.88 E-value=4.4e+02 Score=26.22 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.++....+.. .|++++-..-....-+..+++.+. .+|||+ +.... .+.+..+..+++..+.+.+++.+.|
T Consensus 258 ~~~~~~~~~~----ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-~~~~~----~~~i~~~~~g~~~~~~d~~~~~~~l 328 (366)
T cd03822 258 DEELPELFSA----ADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-TPVGH----AEEVLDGGTGLLVPPGDPAALAEAI 328 (366)
T ss_pred HHHHHHHHhh----cCEEEecccccccccchHHHHHHHcCCCEEe-cCCCC----hheeeeCCCcEEEcCCCHHHHHHHH
Confidence 4556666655 466665333220012345666665 788775 33322 2234455678999999999999998
Q ss_pred HHHHH
Q 009017 129 QHVVH 133 (546)
Q Consensus 129 ~~vlr 133 (546)
..++.
T Consensus 329 ~~l~~ 333 (366)
T cd03822 329 RRLLA 333 (366)
T ss_pred HHHHc
Confidence 87765
No 455
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.87 E-value=3.3e+02 Score=27.92 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhCCCEEEE-------ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 28 SAAAELKFKLEAMDYIVST-------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~-------ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
.....++..+++.|++++. ..+....+..++. ..+|+||+...- .+...+++.++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~--~~~d~vi~~~~~---~~~~~~~~~~~ 213 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN--SKPDLIVISALA---ADGGNLVRQLR 213 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEECCcc---hhHHHHHHHHH
Confidence 3455677777778888652 2345666777777 678998887643 34566777765
No 456
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=28.79 E-value=2.1e+02 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=27.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
+++.+|||..-...+...+...|.+.|+.|+.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 3456899999888888888888888899987543
No 457
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.57 E-value=1.3e+02 Score=29.72 Aligned_cols=10 Identities=20% Similarity=-0.197 Sum_probs=5.5
Q ss_pred CCeeEEEEec
Q 009017 62 ENFHVAIVEV 71 (546)
Q Consensus 62 ~~pDLVIlDl 71 (546)
..|||||+..
T Consensus 73 l~PDLIi~~~ 82 (262)
T cd01147 73 LKPDVVIDVG 82 (262)
T ss_pred cCCCEEEEec
Confidence 3466666543
No 458
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=28.50 E-value=4.8e+02 Score=27.94 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=49.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhhcC------------CCCeeEEEEecCCCCCCCH--HH
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDK------------PENFHVAIVEVTTSNTDGS--FK 81 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~-V~-~ass~~eALe~L~~~------------~~~pDLVIlDl~mp~~~dG--le 81 (546)
.+|+.||-++...+.+++-+...|.. +. ...+..+.+..+... ...||+||+|- |. .| -+
T Consensus 229 ~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--PR--~G~~~~ 304 (362)
T PRK05031 229 RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--PR--AGLDDE 304 (362)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--CC--CCCcHH
Confidence 37999999999999888888777763 43 677777777654210 02489999985 22 33 45
Q ss_pred HHHHhCCC-cEEEEec
Q 009017 82 FLETAKDL-PTIITSN 96 (546)
Q Consensus 82 llr~Lr~i-PIIvLSs 96 (546)
+++.|... .||.++-
T Consensus 305 ~l~~l~~~~~ivyvSC 320 (362)
T PRK05031 305 TLKLVQAYERILYISC 320 (362)
T ss_pred HHHHHHccCCEEEEEe
Confidence 66766543 3555554
No 459
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.44 E-value=2.9e+02 Score=28.37 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=52.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC--CCcEEEEec
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr--~iPIIvLSs 96 (546)
++-+.....++..+...|.+.|..|....+....+..+.. ..++-|++-+...+. .+-+++++..+ .++||.+|+
T Consensus 135 ~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~--~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~ 212 (281)
T COG1737 135 FFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLAL--LTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITD 212 (281)
T ss_pred EEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHh--CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcC
Confidence 3445566677888888899999999988887776644444 334433333554441 22345555554 799999999
Q ss_pred CCChHH
Q 009017 97 IHCLST 102 (546)
Q Consensus 97 ~~d~e~ 102 (546)
......
T Consensus 213 ~~~spl 218 (281)
T COG1737 213 SADSPL 218 (281)
T ss_pred CCCCch
Confidence 755443
No 460
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.37 E-value=2.4e+02 Score=27.16 Aligned_cols=62 Identities=6% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC--CCcEEEEecC
Q 009017 31 AELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr--~iPIIvLSs~ 97 (546)
..+.+.+++.||.+..+.+ .+ ++++.+.. ..+|.||+-- .+ .+ ..++++.++ .+|+|++...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~dgii~~~--~~-~~~~~~~l~~l~~~~ipvv~~~~~ 89 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLIT--RGVDAIIINP--TD-SDAVVPAVKAANEAGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHH--cCCCEEEEcC--CC-hHHHHHHHHHHHHCCCcEEEEccC
Confidence 4566667778999876543 22 45555555 5689877732 12 11 235566664 6899988653
No 461
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.32 E-value=5.2e+02 Score=26.65 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHhhCCCEEEE----ECCH---HHHHHHhhcCCCCeeEEEEe-c----C-----CCCCCCHHHHHHHhCCCcEEE-
Q 009017 32 ELKFKLEAMDYIVST----FYNE---NEALSAFSDKPENFHVAIVE-V----T-----TSNTDGSFKFLETAKDLPTII- 93 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~~----ass~---~eALe~L~~~~~~pDLVIlD-l----~-----mp~~~dGlellr~Lr~iPIIv- 93 (546)
.|...+.+.|.-|.. +.+. ..|++.+... ...+|+|+. - . ..+ +..+..+++.-++|||+
T Consensus 113 ~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~d-l~ai~~lk~~~~lPVivd 190 (250)
T PRK13397 113 EFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLD-IMAVPIIQQKTDLPIIVD 190 (250)
T ss_pred HHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccC-HHHHHHHHHHhCCCeEEC
Confidence 344444455655542 2333 3466666543 456899997 1 1 122 34455556555799998
Q ss_pred EecCCCh-----HHHHHHHHcCCCEE-EeCCCCH
Q 009017 94 TSNIHCL-----STMMKCIALGAVEF-LRKPLSE 121 (546)
Q Consensus 94 LSs~~d~-----e~i~~Al~aGAdDY-L~KP~~~ 121 (546)
.|-.... .....|+.+||+++ |-|-+++
T Consensus 191 ~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 191 VSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred CCCCCcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 5532332 66788899999865 4454444
No 462
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.30 E-value=1.8e+02 Score=30.74 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC----CcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD----LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~----iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+.++.+.+ ..+|+|.+|........-.++++.|++ ++|++ ..-.+.+.+..++++||+....
T Consensus 97 ~~~~~l~e--agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVE--AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 44444455 468999999865431224677787772 44443 4456778889999999998764
No 463
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.28 E-value=3.8e+02 Score=27.82 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=54.4
Q ss_pred EEEEEe--CCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHh----hcCCCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 19 RVLLLD--QDSSA---AAELKFKLEAMDYIVSTFYNENEALSAF----SDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 19 rILIVD--DD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L----~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
+|.|+- +.+.. ...+...| ..|+.+....+..+.+... .. ..+|+||+ + + .||. +++..+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~--~~~D~vi~---l-G-GDGT-~L~a~~~~ 72 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEE--INADVIIT---I-G-GDGT-ILRTLQRA 72 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccc--cCCCEEEE---E-c-CcHH-HHHHHHHc
Confidence 566662 22333 34455555 4588877655433333211 11 24677776 2 3 5773 455544
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
..||+-+- .|-.+||. .++.+++...|+++++..
T Consensus 73 ~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 73 KGPILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCC
Confidence 45877553 26678888 588899999888887653
No 464
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.21 E-value=2.4e+02 Score=29.76 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=44.2
Q ss_pred CEEEEEeCCHHH---HHHHHHHHhhCCCEEEE--E------CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVST--F------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~--a------ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.|+|||-|.... .+.+...|+..|..+.. + .+..++.+.+++ ..+|+||- +.+ ..-+++.+.+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD--NGADVVIG---IGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh--cCCCEEEE---ecC-chhhHHHHHH
Confidence 588888876443 34455666666665421 1 245566777777 67898775 344 5556666655
Q ss_pred ---CCCcEEEE
Q 009017 87 ---KDLPTIIT 94 (546)
Q Consensus 87 ---r~iPIIvL 94 (546)
..+|+|.+
T Consensus 97 a~~~~~P~iaI 107 (351)
T cd08170 97 ADYLGAPVVIV 107 (351)
T ss_pred HHHcCCCEEEe
Confidence 36787766
No 465
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.21 E-value=3.8e+02 Score=30.88 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=33.4
Q ss_pred CEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 009017 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 18 ~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
.+|.+|+-|... .+.+..+-+..|+.+..+.+..+....+..- ..+|+||+|.-
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 468888876522 2333333344566676666666666666542 35899999974
No 466
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.21 E-value=4.1e+02 Score=30.35 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=48.5
Q ss_pred eeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHH-cCCCEEE------eCCCCHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA-LGAVEFL------RKPLSEDKLRNLWQ 129 (546)
Q Consensus 64 pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~-aGAdDYL------~KP~~~eeL~~~I~ 129 (546)
=.|++.|++..+++.| +++++.+. .+|||+-.+-.+.+.+.++++ .||+..+ .+-++..++...++
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 3699999987765556 56777775 799999999999999999997 4555544 34566666665543
No 467
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.20 E-value=1.3e+02 Score=32.14 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=38.7
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.|+|++|..-.....-++.++.|+ ..++|+.-.-...+.+..++++||+.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999986544123456677776 345555554678899999999999998754
No 468
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.18 E-value=1.4e+02 Score=30.76 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred CEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 18 ~rILIVDDD~~~---~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
.+|.||+-|... .+.+..+-+..|+.+..+.+..+..+.+..- ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 577777777632 2334444444466665566665555555442 2478888874
No 469
>PRK11579 putative oxidoreductase; Provisional
Probab=28.17 E-value=5.1e+02 Score=27.13 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-CCCEEEE-ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVST-FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~-ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
.++||.||.--..-.......+.. .+++++. ++...+... . ..+.+-+. .+--++++. .++-+|+
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~--~~~~~~~~-------~~~~ell~~-~~vD~V~ 69 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---A--DWPTVTVV-------SEPQHLFND-PNIDLIV 69 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---h--hCCCCcee-------CCHHHHhcC-CCCCEEE
Confidence 358999998876554444444443 4788764 332222211 1 11111111 111123321 1455555
Q ss_pred EecC--CChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 94 TSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 94 LSs~--~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
++.. .-.+.+.+|+++|..=|+-||+ +.++....++.
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~ 110 (346)
T PRK11579 70 IPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDAL 110 (346)
T ss_pred EcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHH
Confidence 5443 3467889999999999999996 45665554443
No 470
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.13 E-value=2.5e+02 Score=27.26 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ . .+.++.+.. ..+|-||+..... +. +.++.+. .+|+|++-.
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~---~~-~~~~~~~~~~iPvv~~~~ 86 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLD--RRVDGLILGDARS---DD-HFLDELTRRGVPFVLVLR 86 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCC---Ch-HHHHHHHHcCCCEEEEcc
Confidence 345667777788999765332 2 245556666 6789777753222 22 3355554 689988753
No 471
>PRK09186 flagellin modification protein A; Provisional
Probab=28.03 E-value=3e+02 Score=26.66 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=28.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
+.+.+|||..-...+...+...|.+.|++|+...
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3456899999999999999999999999987544
No 472
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.99 E-value=1.8e+02 Score=28.49 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||++..+.+ .+ ++++.+.. ..+|-||+.-.-.+ ...+.++.+. .+|+|++-.
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIA--QGVDVIILAPVVET--GWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEcCCccc--cchHHHHHHHHCCCCEEEEec
Confidence 445667777788999887653 22 34555555 56898887532111 1235566664 689998864
No 473
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.98 E-value=4.9e+02 Score=26.67 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=44.5
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhCCCEEEE-------ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 19 RVLLLDQDSSA----AAELKFKLEAMDYIVST-------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 19 rILIVDDD~~~----~~~L~~~Le~~Gy~V~~-------ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
+|.++-++... ...++..+++.|++|+. ..+....+..+.. ..+|+|++...- .+...+++.++
T Consensus 146 ~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~~d~v~~~~~~---~~~~~~~~~~~ 220 (344)
T cd06345 146 TAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA--ADPDVIIAGFSG---NVGVLFTQQWA 220 (344)
T ss_pred eEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHh--cCCCEEEEeecC---chHHHHHHHHH
Confidence 45444444333 34456666777888653 2355667777776 579999997643 34667777775
Q ss_pred ----CCcEEEEecC
Q 009017 88 ----DLPTIITSNI 97 (546)
Q Consensus 88 ----~iPIIvLSs~ 97 (546)
..+++..+..
T Consensus 221 ~~g~~~~~~~~~~~ 234 (344)
T cd06345 221 EQKVPIPTIGISVE 234 (344)
T ss_pred HcCCCCceEEecCC
Confidence 3455554433
No 474
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.95 E-value=2.7e+02 Score=26.85 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass-------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs 96 (546)
.+...+.+.+++.||.+..+.. ..+.++.+.. ..+|.||+...... ...+.+.++ .+|+|++-.
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 16 STLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLA--QRVDGVIVNAPLDD---ADAALAAAPADVPVVFVDG 87 (264)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHh--cCCCEEEEeCCCCC---hHHHHHHHhcCCCEEEEec
Confidence 4566777888888999764332 1244555656 57898887544322 223333333 699998854
No 475
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.95 E-value=3.4e+02 Score=29.05 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.0
Q ss_pred CEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH
Q 009017 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (546)
Q Consensus 18 ~rILIVDDD~~----~~~~L~~~Le~~Gy~V~~as---------s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr 84 (546)
.|+|||-|... ..+.+...|++.|..+..+. +..++.+.++. ..+|+||- +.+ ..-+++.+
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---iGG-GS~~D~AK 97 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE--GGCDVIIA---LGG-GSPIDTAK 97 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEEEE---eCC-chHHHHHH
Confidence 47998887643 33567788888887766553 24567777777 67898774 234 44556555
Q ss_pred Hh
Q 009017 85 TA 86 (546)
Q Consensus 85 ~L 86 (546)
.+
T Consensus 98 ai 99 (375)
T cd08194 98 AI 99 (375)
T ss_pred HH
Confidence 43
No 476
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=27.94 E-value=3.6e+02 Score=24.91 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 81 KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 81 ellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
++++.++ .+++.+-|- .+.+....+++.|++++++
T Consensus 151 ~~i~~~~~~g~~v~~wtv-n~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTV-NDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHcCCEEEEEcC-CCHHHHHHHHHCCCCEEec
Confidence 3444444 566666654 4567777788888877764
No 477
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=27.93 E-value=6.8e+02 Score=26.64 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=35.8
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCC--hHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHC--LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d--~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
-|++|+. ..|+.+++.+. .+|+|++..... .....-..+.|+- ++ +-+.++|.+.|..++.
T Consensus 274 aDl~I~k------~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~--~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 274 SQLMITK------PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KI--ADTPEEAIKIVASLTN 337 (391)
T ss_pred hhEEEeC------CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EE--eCCHHHHHHHHHHHhc
Confidence 3666652 23666777765 899998754322 2223333455653 44 3378888888877663
No 478
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=27.92 E-value=5e+02 Score=27.44 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=34.5
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCC--hHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHC--LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d--~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
-|++|+. . .|..+++.+. .+|+|+...... ...+....+.|+ +++ +-+.++|...|..++.
T Consensus 283 aDv~V~~----~--g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~-g~~--~~~~~~la~~i~~ll~ 346 (382)
T PLN02605 283 CDCIITK----A--GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGF-GAF--SESPKEIARIVAEWFG 346 (382)
T ss_pred CCEEEEC----C--CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCc-eee--cCCHHHHHHHHHHHHc
Confidence 4666652 1 2455666665 899988653111 112222334565 343 3688888888877764
No 479
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.91 E-value=4.3e+02 Score=29.08 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCEEEEEeC-CHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCC-CCCCC--HHHHHHHh-CCC
Q 009017 17 GLRVLLLDQ-DSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTT-SNTDG--SFKFLETA-KDL 89 (546)
Q Consensus 17 ~~rILIVDD-D~~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~m-p~~~d--Glellr~L-r~i 89 (546)
+-+||+.+| -.-.+..+..+|.+.|++|..+. +..+.++.+.. ...++|+++.=- |- +. -+..+.++ +..
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~-l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPL-LEVPDIPAIARLAKAY 178 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcc-cccccHHHHHHHHHhc
Confidence 457888877 34455677778888899998776 44455666654 368999997521 11 11 13333333 322
Q ss_pred -cEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 90 -PTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 90 -PIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
.++++-+.-......+.++.|||-++
T Consensus 179 g~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 179 GALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred CCEEEEECCcccccccChhhcCCCEEE
Confidence 55555554455677888999987554
No 480
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=27.73 E-value=2.5e+02 Score=30.98 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=47.3
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc---EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHH
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP---TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKL 124 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP---IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL 124 (546)
+.++...++.. .|++++--. -+ .-|+.+++.+. ..| +|++|........ |..+++..|.+.++|
T Consensus 350 ~~~el~~~y~~----aDv~v~pS~-~E-g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~d~~~l 417 (460)
T cd03788 350 PREELAALYRA----ADVALVTPL-RD-GMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPYDIDEV 417 (460)
T ss_pred CHHHHHHHHHh----ccEEEeCcc-cc-ccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCCCHHHH
Confidence 56777777766 577777332 23 23455566665 666 5556643322111 567899999999999
Q ss_pred HHHHHHHHH
Q 009017 125 RNLWQHVVH 133 (546)
Q Consensus 125 ~~~I~~vlr 133 (546)
.++|..++.
T Consensus 418 a~ai~~~l~ 426 (460)
T cd03788 418 ADAIHRALT 426 (460)
T ss_pred HHHHHHHHc
Confidence 999888764
No 481
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=27.71 E-value=3.5e+02 Score=25.57 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
.+...++..+++.|+.+..... ..++++.+.. ..+|.||+-..... . ...++.+. .+|+|++....
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~~~~~~~-~--~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIA--RGVDGIIIAPSDLT-A--PTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCc-c--hhHHHHhhhcCCCEEEeccCC
Confidence 3446677777788998775543 2345555555 46887777543333 1 22455554 68999886653
No 482
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.70 E-value=4.5e+02 Score=25.90 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=45.1
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+..+.+.. ..++ +++.|+...+. ...+++++++. .+|||+..+-.+.+.+.++++.||+.++.
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555555555 3455 56666643221 22467777775 79999988888888899999999998765
No 483
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=27.57 E-value=1.9e+02 Score=19.83 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHH
Q 009017 308 SCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 355 (546)
Q Consensus 308 ~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqky 355 (546)
.||.+=++.|+.++.+.|.. .=+.|.+.|+ +=|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKN--NWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 48999999999999999942 2456777664 46777787776543
No 484
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.56 E-value=3e+02 Score=26.54 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|.||+-...+ +..+.++.+. .+|+|++..
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~~~---~~~~~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLE--HGVAGIILCPAAG---TSPDLLKRLAESGIPVVLVAR 87 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEeCCCC---ccHHHHHHHHhcCCCEEEEec
Confidence 445667777888999876543 22 34555555 5688877754322 2344556654 789998854
No 485
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.54 E-value=4.3e+02 Score=26.57 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHhC--
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK-- 87 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~-------~dGlellr~Lr-- 87 (546)
|++.|-.......+...+++.|..... -.+..+.++.+.. ...|.|++=-..+.. .+..+.++++|
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~--~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAE--LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh--hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 555555665556677777778876432 2233444554444 234444432223320 12345566665
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
++||++=.+-.+.+.+.++.++ |+.++.-
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 6888887777777788888988 9999986
No 486
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=27.49 E-value=3.9e+02 Score=27.91 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=31.5
Q ss_pred CCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHHHH-HcCCCEEEeCCCCHH
Q 009017 62 ENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCI-ALGAVEFLRKPLSED 122 (546)
Q Consensus 62 ~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al-~aGAdDYL~KP~~~e 122 (546)
..+|.|++|...|+ ...+.++... .+|+|+=|.--+.+...+.. ..++--++.--|+..
T Consensus 67 ~~~d~VvIDFT~P~--~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiG 128 (275)
T TIGR02130 67 KYPELICIDYTHPS--AVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQ 128 (275)
T ss_pred hcCCEEEEECCChH--HHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHH
Confidence 34888999999987 2344444433 57766654433433333322 344333344345543
No 487
>PLN00142 sucrose synthase
Probab=27.41 E-value=1e+03 Score=28.74 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
.+...++.. ..|++++= ..-+ .-|+.+++.+. .+|||+ |.... ..+.+..|..+|+..|.+.++|..+|.
T Consensus 657 ~eLyr~iad---aaDVfVlP-S~~E-gFGLvvLEAMA~GlPVVA-TdvGG---~~EIV~dG~tG~LV~P~D~eaLA~aI~ 727 (815)
T PLN00142 657 GELYRYIAD---TKGAFVQP-ALYE-AFGLTVVEAMTCGLPTFA-TCQGG---PAEIIVDGVSGFHIDPYHGDEAANKIA 727 (815)
T ss_pred HHHHHHHHh---hCCEEEeC-Cccc-CCCHHHHHHHHcCCCEEE-cCCCC---HHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 344454443 24666553 2334 56888898887 899876 44433 345677899999999999999999887
Q ss_pred HHHH
Q 009017 130 HVVH 133 (546)
Q Consensus 130 ~vlr 133 (546)
.++.
T Consensus 728 ~lLe 731 (815)
T PLN00142 728 DFFE 731 (815)
T ss_pred HHHH
Confidence 6653
No 488
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=27.41 E-value=7.2e+02 Score=29.91 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=47.0
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
-|++++= ...+ .-|+.+++.+. .+|||+ |.... ..+.+..|..+|+..|.+.++|.++|.+++.
T Consensus 644 adVfV~P-S~~E-pFGLvvLEAMAcGlPVVA-T~~GG---~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~ 708 (784)
T TIGR02470 644 KGIFVQP-ALYE-AFGLTVLEAMTCGLPTFA-TRFGG---PLEIIQDGVSGFHIDPYHGEEAAEKIVDFFE 708 (784)
T ss_pred CcEEEEC-Cccc-CCCHHHHHHHHcCCCEEE-cCCCC---HHHHhcCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3666553 3345 56888999887 899876 44443 3345667999999999999999999887764
No 489
>PRK10867 signal recognition particle protein; Provisional
Probab=27.34 E-value=5.9e+02 Score=28.29 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCEEEEEeCCHHHHH---HHHHHHhhCCCEEEEEC---CHHH----HHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAA---ELKFKLEAMDYIVSTFY---NENE----ALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~---~L~~~Le~~Gy~V~~as---s~~e----ALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|+||+-|..... .+..+.+..|..+.... +..+ +++.... ..+|+||+|.-
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTa 192 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTA 192 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 468999998853332 34444455676655432 3333 3344444 56999999974
No 490
>PRK07024 short chain dehydrogenase; Provisional
Probab=27.25 E-value=2.4e+02 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
+.+|||..-...+...+...|.+.|++|+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 358999999999999999999989999875553
No 491
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=27.21 E-value=4.4e+02 Score=28.35 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=50.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC--CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK--DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~-V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr--~iPI 91 (546)
.+|+-||-++...+..+.-++..|.. +. ...+..+.+.... ..+|+||+|- |- .| -++++.|. ...-
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~---~~~D~vi~DP--Pr--~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM---SAPELVLVNP--PR--RGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---CCCCEEEECC--CC--CCCcHHHHHHHHhcCCCe
Confidence 47999999999999888888877763 33 5566665554322 3589999993 32 33 34555554 2223
Q ss_pred EEEecCCChHHHHHHHHc
Q 009017 92 IITSNIHCLSTMMKCIAL 109 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~a 109 (546)
|+..+..-...+.++..+
T Consensus 329 ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EEEEEeCHHHHHHHHHHh
Confidence 444443334444444444
No 492
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=27.13 E-value=2.9e+02 Score=27.02 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=48.9
Q ss_pred ECCHHHHHHHhhcCCCCe-eEEEEecCCC--CCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 47 FYNENEALSAFSDKPENF-HVAIVEVTTS--NTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 47 ass~~eALe~L~~~~~~p-DLVIlDl~mp--~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
..+..+..+.+.. ..+ .+.++|++-. +...-+++++.++ .+||++=.+-.+.+.+.+++..||+..+.--
T Consensus 29 ~~~~~~~a~~~~~--~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWED--QGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 3477777777766 334 5778887422 1023467777775 6898887777888999999999998877543
No 493
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.11 E-value=3.4e+02 Score=26.10 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+... .++++.+.. ..+|-||+.... .+. ..++.++ .+|||++-.
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~~dgiii~~~~---~~~-~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLA--YQVDGLIVNPTG---NNK-ELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEeCCC---CCh-HHHHHHhcCCCCEEEEcC
Confidence 4456677777889997754332 234455555 568977775432 222 2355554 789998854
No 494
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.01 E-value=2.3e+02 Score=27.58 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+.+. .++++.+.. ..+|.||+...-+. ...+.++.++ .+|+|++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~vdgii~~~~~~~--~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 17 YLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIA--QKVDAIIIQHGRAE--VLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChh--hhHHHHHHHHHcCCCEEEecCC
Confidence 3455667777889998765432 234555555 57898888532111 1234555554 6899888653
No 495
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=27.00 E-value=3.1e+02 Score=26.70 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHhh-CCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 31 AELKFKLEA-MDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 31 ~~L~~~Le~-~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
..+...+++ .||.+..+.+ . .+.++.+.. ..+|.||+...... ...++++.+. .+|+|++...
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIA--QGVDAIIVVPVDTA--ATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCchh--hhHHHHHHHHHCCCeEEEecCC
Confidence 456667777 8999886543 2 244555555 56898887543322 1235566654 7899987553
No 496
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.97 E-value=2.5e+02 Score=27.77 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+...... .+.++.+.. ..+|.||+...-++ ...+.++.+. .+|+|++-..
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~--~~vdgiii~~~~~~--~~~~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMAS--QGWDFIAVDPLGIG--TLTEAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChH--HhHHHHHHHHHCCCcEEEeCCC
Confidence 3455667777889998865432 244555555 57898888532111 1134455553 7899998553
No 497
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=26.80 E-value=4.3e+02 Score=27.89 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCEEEEEeCCHHHH---HHHHHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~---~~L~~~Le~~Gy~V~~as---s~----~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|+|++-|.... +.+...-+..+..++... +. .+++..... ..+|+||+|.-
T Consensus 142 g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 142 GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 46899999886332 334444455565555432 21 244444444 57999999974
No 498
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.80 E-value=3.1e+02 Score=26.73 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs 96 (546)
.+...+...+++.||.+..+.+ . .+.++.+.. ..+|-||+...... .+. +.+.+. .+|+|++-.
T Consensus 16 ~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~-~~~--~~~~~~~~~pvV~i~~ 86 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDT--NHVDGLIFVTNRPD-DGA--LAKLINSYGNIVLVDE 86 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCCC-HHH--HHHHHhcCCCEEEECC
Confidence 3556677778888999875532 2 245666666 67998888643222 222 222222 689988854
No 499
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.74 E-value=1.9e+02 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=31.4
Q ss_pred CEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSS-----AAAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~-----~~~~L~~~Le~~Gy~V~~as---------s~~eALe~L~~~~~~pDLVIl 69 (546)
.|+|||-|... ..+.+...|+..|.++..+. +..++.+.+++ ..+|+||-
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia 89 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE--EGCDFVVG 89 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 47888877544 33566777777776655443 34456666666 56787764
No 500
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=26.72 E-value=2.2e+02 Score=28.68 Aligned_cols=70 Identities=9% Similarity=0.247 Sum_probs=49.2
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 47 FYNENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+.+..+.+..+... ..+++|++|+.--+++.| .+++..+. .-||++=-+-...+....+...|+.+.|.-
T Consensus 136 ~ed~le~Vk~l~~~-~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 136 LEDFLETVKDLNYR-RDPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred chhHHHHHHHHhcc-CCCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 34445555554443 468999999987654554 56777665 567777666677888888888999998864
Done!