Query 009017
Match_columns 546
No_of_seqs 619 out of 2277
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 4.3E-27 1.5E-31 187.3 7.5 61 302-362 3-63 (64)
2 3to5_A CHEY homolog; alpha(5)b 99.9 1E-23 3.4E-28 191.9 14.5 118 14-134 9-133 (134)
3 3gl9_A Response regulator; bet 99.8 3.6E-20 1.2E-24 161.1 16.3 114 17-133 2-121 (122)
4 3t6k_A Response regulator rece 99.8 7E-20 2.4E-24 162.2 16.4 117 16-135 3-125 (136)
5 3f6p_A Transcriptional regulat 99.8 6E-20 2.1E-24 158.9 15.1 114 17-133 2-118 (120)
6 3r0j_A Possible two component 99.8 1.8E-19 6.1E-24 176.3 18.4 157 14-173 20-203 (250)
7 3rqi_A Response regulator prot 99.8 9.4E-20 3.2E-24 170.2 13.1 119 15-136 5-127 (184)
8 3crn_A Response regulator rece 99.8 6.9E-19 2.4E-23 154.4 17.1 118 16-136 2-123 (132)
9 3jte_A Response regulator rece 99.8 1.2E-18 4E-23 154.1 18.0 122 16-138 2-127 (143)
10 2lpm_A Two-component response 99.8 1.1E-21 3.6E-26 176.2 -1.8 110 17-132 8-120 (123)
11 3gt7_A Sensor protein; structu 99.8 8.1E-19 2.8E-23 158.5 16.5 117 17-136 7-129 (154)
12 1dbw_A Transcriptional regulat 99.8 1.6E-18 5.4E-23 150.4 17.5 114 17-133 3-120 (126)
13 1yio_A Response regulatory pro 99.8 2.6E-19 8.8E-24 169.1 13.5 145 14-161 1-157 (208)
14 3hv2_A Response regulator/HD d 99.8 1.5E-18 5.2E-23 156.0 17.3 122 13-137 10-136 (153)
15 3m6m_D Sensory/regulatory prot 99.8 1.1E-18 3.6E-23 156.1 15.7 116 16-134 13-136 (143)
16 1kgs_A DRRD, DNA binding respo 99.8 9.4E-19 3.2E-23 166.9 16.3 143 17-162 2-167 (225)
17 3h1g_A Chemotaxis protein CHEY 99.8 1.3E-18 4.3E-23 152.2 15.7 115 17-133 5-126 (129)
18 2pl1_A Transcriptional regulat 99.8 2.6E-18 9E-23 147.0 17.3 114 18-134 1-118 (121)
19 3q9s_A DNA-binding response re 99.8 3.3E-19 1.1E-23 175.4 13.1 153 16-171 36-207 (249)
20 2qzj_A Two-component response 99.8 1.4E-18 4.9E-23 153.7 15.8 118 16-136 3-123 (136)
21 3cfy_A Putative LUXO repressor 99.8 1.2E-18 4E-23 154.5 14.8 116 18-136 5-124 (137)
22 1zgz_A Torcad operon transcrip 99.8 3.1E-18 1.1E-22 147.1 17.0 114 18-134 3-119 (122)
23 1srr_A SPO0F, sporulation resp 99.8 1.4E-18 4.7E-23 150.0 14.8 113 17-132 3-119 (124)
24 3heb_A Response regulator rece 99.8 2.7E-18 9.3E-23 153.9 17.1 119 14-135 1-136 (152)
25 1xhf_A DYE resistance, aerobic 99.8 3.7E-18 1.3E-22 146.8 17.1 115 17-134 3-120 (123)
26 2a9o_A Response regulator; ess 99.8 2.3E-18 7.8E-23 146.9 15.4 114 18-134 2-118 (120)
27 3grc_A Sensor protein, kinase; 99.8 8.8E-19 3E-23 154.4 13.2 120 14-136 3-129 (140)
28 3kht_A Response regulator; PSI 99.8 3.4E-18 1.2E-22 151.6 16.9 121 16-139 4-133 (144)
29 3nhm_A Response regulator; pro 99.8 1.8E-18 6.3E-23 150.7 14.7 118 14-136 1-124 (133)
30 3kto_A Response regulator rece 99.8 1.5E-18 5.2E-23 153.0 14.0 120 15-136 4-128 (136)
31 1tmy_A CHEY protein, TMY; chem 99.8 2.3E-18 7.7E-23 147.5 14.7 113 17-132 2-119 (120)
32 1jbe_A Chemotaxis protein CHEY 99.8 6.6E-18 2.3E-22 146.2 17.4 115 17-134 4-125 (128)
33 2r25_B Osmosensing histidine p 99.8 2.1E-18 7.2E-23 152.1 14.3 116 17-133 2-126 (133)
34 3eod_A Protein HNR; response r 99.8 2.5E-18 8.6E-23 149.6 14.5 117 16-135 6-127 (130)
35 3snk_A Response regulator CHEY 99.8 2.5E-19 8.7E-24 157.5 8.0 119 13-134 10-133 (135)
36 1a04_A Nitrate/nitrite respons 99.8 3.2E-18 1.1E-22 162.6 16.1 144 17-163 5-171 (215)
37 3hdv_A Response regulator; PSI 99.8 5E-18 1.7E-22 148.8 16.2 117 16-135 6-128 (136)
38 3hdg_A Uncharacterized protein 99.8 2.6E-18 9E-23 150.8 14.2 119 17-138 7-129 (137)
39 3b2n_A Uncharacterized protein 99.8 2.5E-18 8.6E-23 151.0 14.1 116 17-135 3-124 (133)
40 3i42_A Response regulator rece 99.8 1.2E-18 3.9E-23 151.1 11.7 115 16-134 2-122 (127)
41 4e7p_A Response regulator; DNA 99.8 4.1E-18 1.4E-22 152.7 15.6 116 16-134 19-140 (150)
42 3kcn_A Adenylate cyclase homol 99.8 5.3E-18 1.8E-22 152.1 16.3 119 14-136 1-125 (151)
43 3lua_A Response regulator rece 99.8 1.4E-18 4.8E-23 153.4 12.1 120 15-136 2-129 (140)
44 2qxy_A Response regulator; reg 99.8 3.3E-18 1.1E-22 151.1 14.4 118 14-135 1-122 (142)
45 3hzh_A Chemotaxis response reg 99.8 2.3E-18 7.8E-23 156.0 13.6 115 15-132 34-155 (157)
46 1zh2_A KDP operon transcriptio 99.8 4.6E-18 1.6E-22 145.2 14.6 114 18-134 2-118 (121)
47 1p6q_A CHEY2; chemotaxis, sign 99.8 3.3E-18 1.1E-22 148.3 13.8 115 16-133 5-126 (129)
48 2qr3_A Two-component system re 99.8 5.2E-18 1.8E-22 148.8 14.9 116 16-134 2-126 (140)
49 3cnb_A DNA-binding response re 99.8 8.6E-18 2.9E-22 147.6 16.2 119 14-135 5-131 (143)
50 1ys7_A Transcriptional regulat 99.8 4E-18 1.4E-22 163.4 15.1 153 17-172 7-185 (233)
51 3h5i_A Response regulator/sens 99.8 3.4E-18 1.2E-22 151.5 12.8 120 17-138 5-128 (140)
52 1i3c_A Response regulator RCP1 99.8 1.9E-17 6.4E-22 148.5 17.7 118 17-135 8-138 (149)
53 1mvo_A PHOP response regulator 99.8 7.2E-18 2.5E-22 147.5 14.4 115 17-134 3-121 (136)
54 2oqr_A Sensory transduction pr 99.8 4.3E-18 1.5E-22 163.1 13.8 142 17-161 4-171 (230)
55 2jba_A Phosphate regulon trans 99.8 1.8E-18 6.1E-23 149.3 9.9 114 17-133 2-121 (127)
56 1dz3_A Stage 0 sporulation pro 99.8 4.7E-18 1.6E-22 148.1 12.6 115 17-134 2-123 (130)
57 3luf_A Two-component system re 99.8 1.1E-17 3.6E-22 166.2 16.7 118 16-136 123-247 (259)
58 3c3m_A Response regulator rece 99.8 1.2E-17 4.2E-22 147.5 15.3 114 17-133 3-122 (138)
59 2zay_A Response regulator rece 99.8 5.7E-18 2E-22 150.4 13.2 118 16-136 7-130 (147)
60 2rjn_A Response regulator rece 99.8 2E-17 6.7E-22 148.6 16.8 118 16-136 6-128 (154)
61 1mb3_A Cell division response 99.8 8.7E-18 3E-22 144.4 13.7 113 18-133 2-120 (124)
62 3cg0_A Response regulator rece 99.8 1.9E-17 6.5E-22 145.2 15.9 120 16-138 8-132 (140)
63 3f6c_A Positive transcription 99.8 2.3E-18 8E-23 150.2 10.0 114 18-134 2-120 (134)
64 1k68_A Phytochrome response re 99.8 4.6E-17 1.6E-21 141.8 18.0 121 17-138 2-135 (140)
65 3n53_A Response regulator rece 99.7 3.8E-18 1.3E-22 150.6 10.9 117 16-136 2-124 (140)
66 1k66_A Phytochrome response re 99.7 4.8E-17 1.7E-21 143.5 18.0 122 16-138 5-142 (149)
67 2gwr_A DNA-binding response re 99.7 3.5E-18 1.2E-22 165.6 11.7 144 17-163 5-170 (238)
68 3cu5_A Two component transcrip 99.7 6.5E-18 2.2E-22 150.4 12.3 117 17-136 2-125 (141)
69 3cg4_A Response regulator rece 99.7 6E-18 2E-22 149.1 11.8 120 16-138 6-131 (142)
70 3lte_A Response regulator; str 99.7 2.4E-17 8.4E-22 143.4 15.5 117 15-135 4-126 (132)
71 3mm4_A Histidine kinase homolo 99.7 1.4E-17 4.9E-22 159.1 14.8 119 15-136 59-198 (206)
72 1dcf_A ETR1 protein; beta-alph 99.7 4.9E-17 1.7E-21 142.7 16.7 114 16-133 6-128 (136)
73 1qkk_A DCTD, C4-dicarboxylate 99.7 4.5E-17 1.5E-21 146.4 16.2 117 17-136 3-123 (155)
74 3a10_A Response regulator; pho 99.7 1E-17 3.5E-22 142.6 11.2 110 18-132 2-115 (116)
75 3n0r_A Response regulator; sig 99.7 3.7E-18 1.3E-22 172.8 9.7 114 17-135 160-278 (286)
76 1p2f_A Response regulator; DRR 99.7 2.5E-17 8.7E-22 157.0 14.9 140 17-162 2-161 (220)
77 3c3w_A Two component transcrip 99.7 2.3E-18 8E-23 166.0 7.6 145 17-164 1-167 (225)
78 2ayx_A Sensor kinase protein R 99.7 2.8E-17 9.6E-22 162.3 15.2 118 16-136 128-249 (254)
79 3eul_A Possible nitrate/nitrit 99.7 4.1E-17 1.4E-21 146.2 14.8 117 16-135 14-136 (152)
80 1s8n_A Putative antiterminator 99.7 2.4E-17 8.1E-22 155.7 13.9 117 16-135 12-132 (205)
81 3cz5_A Two-component response 99.7 3.3E-17 1.1E-21 147.0 14.2 114 17-133 5-124 (153)
82 2gkg_A Response regulator homo 99.7 2.1E-17 7.2E-22 141.6 12.0 114 16-133 4-124 (127)
83 3ilh_A Two component response 99.7 9.3E-17 3.2E-21 141.5 16.3 118 15-133 7-138 (146)
84 4dad_A Putative pilus assembly 99.7 1.7E-17 5.8E-22 147.5 10.7 118 16-134 19-141 (146)
85 3eqz_A Response regulator; str 99.7 2E-17 7E-22 143.8 10.9 114 16-133 2-124 (135)
86 3dzd_A Transcriptional regulat 99.7 2.5E-17 8.5E-22 172.7 13.2 115 19-136 2-120 (368)
87 2jk1_A HUPR, hydrogenase trans 99.7 1.8E-16 6E-21 139.9 16.3 114 18-135 2-120 (139)
88 3eq2_A Probable two-component 99.7 1.9E-17 6.4E-22 173.0 10.9 117 17-136 5-126 (394)
89 2qvg_A Two component response 99.7 1.9E-16 6.4E-21 139.6 15.3 116 16-132 6-133 (143)
90 2qv0_A Protein MRKE; structura 99.7 3.7E-16 1.3E-20 138.0 16.6 117 17-138 9-131 (143)
91 2qsj_A DNA-binding response re 99.7 9.6E-17 3.3E-21 143.8 10.9 117 16-134 2-124 (154)
92 1ny5_A Transcriptional regulat 99.7 2.2E-16 7.4E-21 166.4 15.4 115 18-135 1-119 (387)
93 2rdm_A Response regulator rece 99.7 5.1E-16 1.7E-20 134.7 15.1 114 16-134 4-123 (132)
94 1w25_A Stalked-cell differenti 99.7 2.7E-16 9.3E-21 166.8 15.7 115 18-135 2-122 (459)
95 3klo_A Transcriptional regulat 99.7 1.2E-17 4.3E-22 160.4 4.7 143 16-161 6-174 (225)
96 2pln_A HP1043, response regula 99.7 7E-16 2.4E-20 135.5 15.1 113 15-134 16-133 (137)
97 3t8y_A CHEB, chemotaxis respon 99.7 4.6E-16 1.6E-20 142.3 14.2 114 16-132 24-153 (164)
98 3kyj_B CHEY6 protein, putative 99.7 1.9E-16 6.7E-21 140.7 10.8 112 15-129 11-130 (145)
99 3c97_A Signal transduction his 99.7 3.2E-16 1.1E-20 138.5 11.3 113 17-135 10-131 (140)
100 2hqr_A Putative transcriptiona 99.7 2.2E-16 7.5E-21 150.8 10.8 138 18-162 1-159 (223)
101 1dc7_A NTRC, nitrogen regulati 99.6 6.8E-18 2.3E-22 144.4 -1.1 115 17-134 3-121 (124)
102 3bre_A Probable two-component 99.6 6.7E-16 2.3E-20 157.9 13.5 114 17-133 18-138 (358)
103 2j48_A Two-component sensor ki 99.6 5.4E-16 1.8E-20 130.4 10.2 109 18-132 2-116 (119)
104 3sy8_A ROCR; TIM barrel phosph 99.6 4.9E-16 1.7E-20 163.4 10.6 118 16-135 2-129 (400)
105 1qo0_D AMIR; binding protein, 99.6 1.1E-15 3.8E-20 143.2 8.9 112 17-136 12-127 (196)
106 2b4a_A BH3024; flavodoxin-like 99.6 1.7E-15 5.9E-20 133.1 8.7 113 15-133 13-130 (138)
107 3luf_A Two-component system re 99.6 4.9E-15 1.7E-19 147.0 10.8 101 17-121 4-107 (259)
108 1a2o_A CHEB methylesterase; ba 99.6 1.8E-14 6.2E-19 150.1 14.9 115 16-133 2-132 (349)
109 2vyc_A Biodegradative arginine 99.5 3.8E-14 1.3E-18 161.4 8.4 117 18-136 1-135 (755)
110 1w25_A Stalked-cell differenti 99.0 1.1E-08 3.7E-13 108.3 17.0 114 17-135 152-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.8 2.5E-09 8.5E-14 101.8 3.6 88 42-132 6-99 (237)
112 3q7r_A Transcriptional regulat 97.0 0.0076 2.6E-07 52.0 11.1 106 17-134 12-118 (121)
113 2ayx_A Sensor kinase protein R 96.8 0.0028 9.5E-08 61.8 7.9 95 16-132 10-104 (254)
114 3n75_A LDC, lysine decarboxyla 96.7 0.00098 3.4E-08 75.5 4.9 102 29-135 18-124 (715)
115 2yxb_A Coenzyme B12-dependent 95.7 0.23 7.9E-06 45.7 14.5 116 17-135 18-146 (161)
116 1ccw_A Protein (glutamate muta 94.0 1.1 3.7E-05 39.9 13.5 111 18-131 4-133 (137)
117 3cwo_X Beta/alpha-barrel prote 93.9 0.23 7.7E-06 46.3 9.4 78 49-128 131-220 (237)
118 3fkq_A NTRC-like two-domain pr 92.4 0.54 1.8E-05 48.4 10.2 105 16-133 20-127 (373)
119 3q58_A N-acetylmannosamine-6-p 90.1 1.5 5.1E-05 42.6 10.2 87 27-117 115-210 (229)
120 2xij_A Methylmalonyl-COA mutas 89.6 2.1 7.3E-05 48.6 12.3 119 17-137 604-734 (762)
121 1wv2_A Thiazole moeity, thiazo 88.2 2.4 8.2E-05 42.3 10.1 99 31-133 125-237 (265)
122 3igs_A N-acetylmannosamine-6-p 88.1 2.5 8.4E-05 41.1 10.2 87 27-117 115-210 (232)
123 2i2x_B MTAC, methyltransferase 86.7 5.5 0.00019 39.0 11.9 95 17-116 123-229 (258)
124 2yum_A ZZZ3 protein, zinc fing 86.4 1.2 4.2E-05 35.5 5.7 55 303-359 5-62 (75)
125 1req_A Methylmalonyl-COA mutas 86.1 3.2 0.00011 47.0 10.9 116 17-134 596-723 (727)
126 1r8j_A KAIA; circadian clock p 85.6 4.2 0.00014 40.6 10.1 121 16-140 8-135 (289)
127 2yus_A SWI/SNF-related matrix- 85.3 2.1 7.1E-05 35.0 6.6 50 301-355 13-62 (79)
128 3qja_A IGPS, indole-3-glycerol 81.8 11 0.00039 37.3 11.8 96 19-117 138-242 (272)
129 1y80_A Predicted cobalamin bin 81.6 3 0.0001 39.3 7.2 95 17-116 88-196 (210)
130 2bfw_A GLGA glycogen synthase; 81.5 14 0.00049 32.8 11.5 105 17-133 70-179 (200)
131 2cqr_A RSGI RUH-043, DNAJ homo 81.2 5.3 0.00018 32.1 7.3 54 301-356 13-67 (73)
132 2cu7_A KIAA1915 protein; nucle 78.3 6.4 0.00022 31.0 7.0 51 304-359 7-57 (72)
133 2l69_A Rossmann 2X3 fold prote 77.8 5.8 0.0002 33.7 6.8 114 18-134 3-123 (134)
134 1xrs_B D-lysine 5,6-aminomutas 77.4 20 0.00067 35.6 11.7 111 17-133 120-257 (262)
135 3ezx_A MMCP 1, monomethylamine 77.0 3.7 0.00013 39.3 6.2 95 17-116 92-202 (215)
136 3tsm_A IGPS, indole-3-glycerol 76.3 17 0.00059 36.2 11.1 86 29-117 157-249 (272)
137 3rht_A (gatase1)-like protein; 76.0 0.91 3.1E-05 45.1 1.7 50 17-70 4-57 (259)
138 2xci_A KDO-transferase, 3-deox 75.9 7.6 0.00026 39.5 8.6 109 17-133 225-345 (374)
139 3ic5_A Putative saccharopine d 75.7 10 0.00036 30.8 8.0 90 17-114 5-97 (118)
140 2gek_A Phosphatidylinositol ma 75.4 10 0.00035 37.6 9.3 106 17-133 240-348 (406)
141 2htm_A Thiazole biosynthesis p 75.2 10 0.00034 37.9 8.9 96 33-133 116-228 (268)
142 1xi3_A Thiamine phosphate pyro 74.9 20 0.00068 33.0 10.6 74 40-117 107-190 (215)
143 1yad_A Regulatory protein TENI 74.5 13 0.00045 34.9 9.3 73 41-117 110-192 (221)
144 3u3x_A Oxidoreductase; structu 74.1 5.1 0.00017 40.9 6.7 108 11-129 20-133 (361)
145 2q5c_A NTRC family transcripti 72.9 24 0.00083 33.0 10.7 55 14-69 1-57 (196)
146 3o63_A Probable thiamine-phosp 72.9 20 0.0007 34.9 10.5 67 46-116 141-218 (243)
147 3fro_A GLGA glycogen synthase; 72.6 26 0.00088 34.9 11.6 105 17-133 285-394 (439)
148 3kp1_A D-ornithine aminomutase 71.8 16 0.00055 40.9 10.2 112 17-134 602-735 (763)
149 2f9f_A First mannosyl transfer 71.7 21 0.0007 31.7 9.6 105 17-133 50-161 (177)
150 2gjl_A Hypothetical protein PA 71.6 27 0.00093 35.0 11.4 82 33-117 110-201 (328)
151 3ffs_A Inosine-5-monophosphate 71.3 39 0.0013 35.4 12.9 96 18-117 157-275 (400)
152 3fwz_A Inner membrane protein 70.2 22 0.00076 30.6 9.2 27 88-116 98-124 (140)
153 3db2_A Putative NADPH-dependen 68.5 26 0.00087 35.2 10.5 105 14-130 2-112 (354)
154 3c48_A Predicted glycosyltrans 68.4 16 0.00056 36.8 9.1 106 18-133 277-390 (438)
155 1x41_A Transcriptional adaptor 68.3 14 0.00049 27.9 6.5 50 304-357 6-55 (60)
156 3bo9_A Putative nitroalkan dio 67.4 29 0.00099 35.0 10.6 81 34-117 117-205 (326)
157 4fo4_A Inosine 5'-monophosphat 66.6 39 0.0014 34.9 11.5 97 17-117 120-240 (366)
158 4fyk_A Deoxyribonucleoside 5'- 65.9 13 0.00045 33.9 6.9 111 18-134 3-142 (152)
159 2iw1_A Lipopolysaccharide core 65.7 20 0.00067 35.1 8.8 104 18-133 229-336 (374)
160 3dhn_A NAD-dependent epimerase 65.5 23 0.0008 32.4 8.8 73 16-96 3-75 (227)
161 3llv_A Exopolyphosphatase-rela 65.4 16 0.00054 31.3 7.1 52 17-71 6-57 (141)
162 3bw2_A 2-nitropropane dioxygen 65.2 39 0.0013 34.5 11.2 77 37-116 141-236 (369)
163 2z6i_A Trans-2-enoyl-ACP reduc 64.8 35 0.0012 34.4 10.6 79 35-116 104-190 (332)
164 3r2g_A Inosine 5'-monophosphat 64.5 85 0.0029 32.4 13.5 97 17-117 112-228 (361)
165 3uuw_A Putative oxidoreductase 63.1 24 0.00081 34.6 8.8 105 13-130 2-112 (308)
166 2cqq_A RSGI RUH-037, DNAJ homo 62.9 8 0.00027 30.9 4.2 47 307-358 9-58 (72)
167 3ia7_A CALG4; glycosysltransfe 62.7 18 0.00062 35.9 8.0 34 17-50 4-41 (402)
168 1rzu_A Glycogen synthase 1; gl 62.5 36 0.0012 35.0 10.4 106 17-132 320-438 (485)
169 3khj_A Inosine-5-monophosphate 62.2 46 0.0016 34.2 11.0 96 18-117 118-236 (361)
170 2iw5_B Protein corest, REST co 62.1 11 0.00038 36.8 5.8 50 304-358 131-180 (235)
171 3qz6_A HPCH/HPAI aldolase; str 62.0 53 0.0018 32.1 11.0 94 33-129 6-108 (261)
172 1geq_A Tryptophan synthase alp 62.0 17 0.00058 34.6 7.3 46 79-124 68-122 (248)
173 3ec7_A Putative dehydrogenase; 61.5 22 0.00076 35.9 8.5 107 15-130 21-133 (357)
174 2qzs_A Glycogen synthase; glyc 61.5 28 0.00096 35.8 9.4 106 17-132 321-439 (485)
175 3euw_A MYO-inositol dehydrogen 61.4 26 0.00089 34.9 8.9 104 15-129 2-110 (344)
176 1thf_D HISF protein; thermophI 61.4 50 0.0017 31.3 10.5 66 50-117 153-224 (253)
177 2d00_A V-type ATP synthase sub 60.3 43 0.0015 28.6 8.8 73 16-96 2-80 (109)
178 2lci_A Protein OR36; structura 59.6 20 0.00067 30.4 6.2 27 19-45 53-79 (134)
179 2rir_A Dipicolinate synthase, 59.5 22 0.00076 35.0 7.8 97 13-116 3-125 (300)
180 3f4w_A Putative hexulose 6 pho 59.4 39 0.0013 31.1 9.2 95 20-117 80-187 (211)
181 2iuy_A Avigt4, glycosyltransfe 59.3 17 0.00057 35.5 6.8 56 16-73 2-94 (342)
182 1y0e_A Putative N-acetylmannos 58.2 32 0.0011 32.0 8.4 74 41-117 119-204 (223)
183 3h2s_A Putative NADH-flavin re 58.1 23 0.00077 32.3 7.2 70 18-96 1-70 (224)
184 1ka9_F Imidazole glycerol phos 57.8 52 0.0018 31.1 9.9 75 51-127 155-241 (252)
185 3kux_A Putative oxidoreductase 57.7 56 0.0019 32.7 10.6 104 13-129 3-112 (352)
186 3qvo_A NMRA family protein; st 57.6 25 0.00086 32.8 7.5 75 15-96 21-96 (236)
187 1v4v_A UDP-N-acetylglucosamine 57.5 76 0.0026 31.1 11.5 99 18-133 231-333 (376)
188 2c6q_A GMP reductase 2; TIM ba 57.3 1.5E+02 0.005 30.3 13.8 98 18-119 133-255 (351)
189 1xm3_A Thiazole biosynthesis p 57.2 14 0.00048 36.3 5.8 74 41-117 126-207 (264)
190 2r60_A Glycosyl transferase, g 57.1 33 0.0011 35.5 9.1 94 30-133 321-423 (499)
191 3d4o_A Dipicolinate synthase s 56.3 17 0.00057 35.9 6.2 93 14-113 2-120 (293)
192 3l0g_A Nicotinate-nucleotide p 56.1 12 0.00042 37.9 5.3 91 20-115 181-277 (300)
193 3l9w_A Glutathione-regulated p 55.9 22 0.00075 37.2 7.4 90 18-117 28-122 (413)
194 3m2t_A Probable dehydrogenase; 55.3 37 0.0013 34.3 8.9 106 15-130 3-114 (359)
195 2tps_A Protein (thiamin phosph 54.7 62 0.0021 30.0 9.8 68 46-117 122-200 (227)
196 1vgv_A UDP-N-acetylglucosamine 54.6 63 0.0022 31.7 10.3 47 82-133 294-341 (384)
197 2v5j_A 2,4-dihydroxyhept-2-ENE 54.2 97 0.0033 30.7 11.5 93 33-129 30-131 (287)
198 3okp_A GDP-mannose-dependent a 54.1 20 0.00068 35.2 6.5 105 18-133 230-343 (394)
199 3qhp_A Type 1 capsular polysac 54.1 36 0.0012 29.2 7.5 105 17-133 32-139 (166)
200 3r6d_A NAD-dependent epimerase 54.0 1E+02 0.0035 28.0 11.0 72 18-96 6-81 (221)
201 4e5v_A Putative THUA-like prot 53.7 13 0.00044 37.1 4.9 75 17-95 4-93 (281)
202 3dr5_A Putative O-methyltransf 53.5 39 0.0013 31.7 8.2 57 17-75 81-141 (221)
203 3beo_A UDP-N-acetylglucosamine 53.5 1.3E+02 0.0043 29.3 12.3 67 51-133 274-341 (375)
204 2v82_A 2-dehydro-3-deoxy-6-pho 52.5 26 0.0009 32.4 6.7 76 35-117 95-176 (212)
205 4dim_A Phosphoribosylglycinami 52.5 69 0.0024 32.3 10.4 34 14-48 4-37 (403)
206 3usb_A Inosine-5'-monophosphat 52.3 87 0.003 33.7 11.6 98 17-117 268-388 (511)
207 1geq_A Tryptophan synthase alp 51.9 48 0.0017 31.3 8.6 81 32-117 124-220 (248)
208 2vws_A YFAU, 2-keto-3-deoxy su 51.6 1.2E+02 0.0042 29.4 11.7 93 33-129 9-110 (267)
209 3tqv_A Nicotinate-nucleotide p 51.4 25 0.00084 35.4 6.6 91 20-115 172-268 (287)
210 2ekc_A AQ_1548, tryptophan syn 51.2 43 0.0015 32.6 8.2 50 80-129 82-141 (262)
211 2hzd_A Transcriptional enhance 51.0 25 0.00085 29.0 5.3 53 308-361 8-77 (82)
212 3abi_A Putative uncharacterize 50.7 34 0.0012 34.6 7.7 95 17-122 16-112 (365)
213 2jjm_A Glycosyl transferase, g 50.5 24 0.00081 35.1 6.4 64 64-133 285-349 (394)
214 2x6q_A Trehalose-synthase TRET 50.4 79 0.0027 31.5 10.4 104 18-133 263-378 (416)
215 3rc1_A Sugar 3-ketoreductase; 50.0 33 0.0011 34.6 7.4 103 15-129 25-134 (350)
216 4avf_A Inosine-5'-monophosphat 49.7 1.3E+02 0.0043 32.2 12.3 96 18-117 242-361 (490)
217 3fwz_A Inner membrane protein 49.3 42 0.0014 28.9 7.1 74 18-100 8-83 (140)
218 3ot5_A UDP-N-acetylglucosamine 49.2 1.2E+02 0.0041 31.0 11.7 58 64-133 302-360 (403)
219 2gek_A Phosphatidylinositol ma 49.1 32 0.0011 34.0 7.1 35 13-47 16-58 (406)
220 1eep_A Inosine 5'-monophosphat 48.8 79 0.0027 32.6 10.3 84 29-116 181-284 (404)
221 2khz_A C-MYC-responsive protei 48.6 16 0.00055 33.3 4.4 115 14-134 8-151 (165)
222 3mz0_A Inositol 2-dehydrogenas 48.2 67 0.0023 31.9 9.3 105 17-130 2-112 (344)
223 3e18_A Oxidoreductase; dehydro 48.2 58 0.002 32.8 8.9 102 16-130 4-111 (359)
224 3m2p_A UDP-N-acetylglucosamine 48.1 49 0.0017 31.9 8.1 51 17-72 2-52 (311)
225 4dzz_A Plasmid partitioning pr 48.0 33 0.0011 30.8 6.4 51 17-72 30-84 (206)
226 1qdl_B Protein (anthranilate s 47.8 7.3 0.00025 36.1 1.9 48 20-69 4-51 (195)
227 4hkt_A Inositol 2-dehydrogenas 47.8 65 0.0022 31.8 9.1 100 17-129 3-108 (331)
228 3sc6_A DTDP-4-dehydrorhamnose 47.7 30 0.001 32.9 6.4 54 18-73 6-66 (287)
229 2oo3_A Protein involved in cat 47.7 18 0.00063 36.3 4.9 57 17-73 113-169 (283)
230 1qop_A Tryptophan synthase alp 47.7 29 0.00098 34.0 6.3 74 53-128 36-140 (268)
231 3llv_A Exopolyphosphatase-rela 47.6 96 0.0033 26.1 9.1 90 17-116 29-122 (141)
232 2w6r_A Imidazole glycerol phos 47.3 59 0.002 31.0 8.5 66 50-117 158-229 (266)
233 3rot_A ABC sugar transporter, 47.3 61 0.0021 30.8 8.6 77 18-98 4-96 (297)
234 2fn9_A Ribose ABC transporter, 47.3 1E+02 0.0034 28.9 10.1 65 29-97 20-92 (290)
235 2xag_B REST corepressor 1; ami 47.2 27 0.00093 37.6 6.4 52 303-359 377-428 (482)
236 3ew7_A LMO0794 protein; Q8Y8U8 47.1 62 0.0021 29.1 8.2 69 18-96 1-69 (221)
237 3q2i_A Dehydrogenase; rossmann 47.1 75 0.0025 31.7 9.5 104 16-130 12-121 (354)
238 3ezy_A Dehydrogenase; structur 46.8 47 0.0016 33.1 7.9 104 17-130 2-110 (344)
239 3ius_A Uncharacterized conserv 46.3 16 0.00053 34.9 4.1 67 17-96 5-71 (286)
240 1h5y_A HISF; histidine biosynt 46.3 84 0.0029 29.1 9.2 66 49-116 155-226 (253)
241 1qyd_A Pinoresinol-lariciresin 45.9 1.5E+02 0.0051 28.2 11.3 72 17-95 4-83 (313)
242 3paj_A Nicotinate-nucleotide p 45.8 37 0.0013 34.7 6.9 93 19-116 204-302 (320)
243 1ujp_A Tryptophan synthase alp 45.5 22 0.00076 35.2 5.1 74 52-128 34-137 (271)
244 1jcn_A Inosine monophosphate d 45.2 1.2E+02 0.0042 32.2 11.4 83 31-116 285-386 (514)
245 1qpo_A Quinolinate acid phosph 45.1 49 0.0017 33.0 7.6 92 20-116 168-268 (284)
246 4ew6_A D-galactose-1-dehydroge 44.9 47 0.0016 33.1 7.6 102 13-130 21-127 (330)
247 1zh8_A Oxidoreductase; TM0312, 44.3 79 0.0027 31.5 9.2 106 14-130 15-128 (340)
248 2gn4_A FLAA1 protein, UDP-GLCN 44.1 1.6E+02 0.0055 29.1 11.4 82 8-96 12-99 (344)
249 1dxe_A 2-dehydro-3-deoxy-galac 43.7 1.6E+02 0.0056 28.3 11.1 92 33-127 10-109 (256)
250 4adt_A Pyridoxine biosynthetic 43.5 1.3E+02 0.0046 30.0 10.6 71 44-117 129-238 (297)
251 4a29_A Engineered retro-aldol 43.5 2.4E+02 0.0081 27.9 12.1 85 29-117 141-233 (258)
252 1tlt_A Putative oxidoreductase 43.4 1.2E+02 0.0041 29.6 10.3 99 16-127 4-108 (319)
253 3moi_A Probable dehydrogenase; 43.2 61 0.0021 33.0 8.2 103 17-130 2-110 (387)
254 2lci_A Protein OR36; structura 42.8 1.5E+02 0.0052 25.0 9.7 115 17-135 2-124 (134)
255 3c3y_A Pfomt, O-methyltransfer 42.7 78 0.0027 29.7 8.4 54 17-72 95-156 (237)
256 3oti_A CALG3; calicheamicin, T 42.4 53 0.0018 32.8 7.6 33 17-49 20-56 (398)
257 3bul_A Methionine synthase; tr 42.4 56 0.0019 36.0 8.2 96 17-116 98-210 (579)
258 2nvw_A Galactose/lactose metab 42.0 63 0.0022 34.3 8.4 106 15-129 37-159 (479)
259 1rd5_A Tryptophan synthase alp 41.6 37 0.0013 32.8 6.0 39 79-117 189-230 (262)
260 2w6r_A Imidazole glycerol phos 41.1 55 0.0019 31.2 7.2 68 49-118 31-104 (266)
261 1qop_A Tryptophan synthase alp 41.1 64 0.0022 31.4 7.7 38 80-117 194-234 (268)
262 3s28_A Sucrose synthase 1; gly 41.1 1.3E+02 0.0046 34.3 11.3 107 18-133 604-729 (816)
263 3bbl_A Regulatory protein of L 40.9 1.1E+02 0.0037 28.9 9.2 64 28-97 25-96 (287)
264 3oy2_A Glycosyltransferase B73 40.6 65 0.0022 32.0 7.9 105 18-133 216-354 (413)
265 1ity_A TRF1; helix-turn-helix, 40.5 69 0.0023 24.7 6.3 53 301-355 5-57 (69)
266 2ixa_A Alpha-N-acetylgalactosa 40.5 95 0.0033 32.2 9.4 113 13-130 16-137 (444)
267 3i6i_A Putative leucoanthocyan 40.3 1.3E+02 0.0046 29.3 10.1 92 17-115 10-116 (346)
268 1vc4_A Indole-3-glycerol phosp 40.1 44 0.0015 32.6 6.3 82 31-117 141-236 (254)
269 3g1w_A Sugar ABC transporter; 40.1 1.1E+02 0.0037 28.9 9.1 65 30-98 23-96 (305)
270 1qv9_A F420-dependent methylen 39.9 46 0.0016 32.8 6.1 100 17-120 3-122 (283)
271 1req_B Methylmalonyl-COA mutas 39.9 34 0.0012 38.1 6.0 96 30-129 527-630 (637)
272 4gud_A Imidazole glycerol phos 39.6 31 0.0011 31.8 5.0 44 18-69 3-46 (211)
273 2lnd_A De novo designed protei 39.5 1.6E+02 0.0054 24.2 9.3 92 19-134 4-101 (112)
274 1qyc_A Phenylcoumaran benzylic 39.3 1.3E+02 0.0046 28.5 9.7 92 17-115 4-110 (308)
275 1ypf_A GMP reductase; GUAC, pu 39.3 3.1E+02 0.01 27.4 12.8 94 19-116 122-238 (336)
276 3l4e_A Uncharacterized peptida 39.2 75 0.0026 29.9 7.6 48 18-69 28-85 (206)
277 1i1q_B Anthranilate synthase c 39.1 41 0.0014 30.8 5.6 51 18-69 1-54 (192)
278 1x1o_A Nicotinate-nucleotide p 39.0 72 0.0025 31.8 7.8 92 19-116 168-267 (286)
279 1h5y_A HISF; histidine biosynt 39.0 1.1E+02 0.0037 28.3 8.8 69 47-117 32-106 (253)
280 3kke_A LACI family transcripti 39.0 58 0.002 31.1 7.0 66 28-98 32-104 (303)
281 3gnn_A Nicotinate-nucleotide p 38.9 79 0.0027 31.9 8.0 66 44-114 213-278 (298)
282 3l6u_A ABC-type sugar transpor 38.6 75 0.0026 29.8 7.6 65 30-98 27-99 (293)
283 3brq_A HTH-type transcriptiona 38.6 1.5E+02 0.0052 27.6 9.8 64 28-97 38-110 (296)
284 1ka9_F Imidazole glycerol phos 38.4 84 0.0029 29.6 7.9 67 48-117 31-104 (252)
285 1sui_A Caffeoyl-COA O-methyltr 38.3 1.3E+02 0.0045 28.4 9.3 55 17-73 104-166 (247)
286 3rsc_A CALG2; TDP, enediyne, s 38.2 53 0.0018 32.9 6.8 75 16-95 19-147 (415)
287 1iow_A DD-ligase, DDLB, D-ALA\ 38.1 21 0.00073 34.4 3.7 54 17-72 2-63 (306)
288 2elk_A SPCC24B10.08C protein; 38.1 81 0.0028 23.5 6.2 48 306-356 9-56 (58)
289 3s83_A Ggdef family protein; s 38.0 67 0.0023 30.4 7.2 96 31-129 142-253 (259)
290 3tsa_A SPNG, NDP-rhamnosyltran 37.9 56 0.0019 32.4 6.8 73 17-95 1-142 (391)
291 2ho3_A Oxidoreductase, GFO/IDH 37.9 1.8E+02 0.0062 28.4 10.6 101 17-129 1-107 (325)
292 3gjy_A Spermidine synthase; AP 37.7 1.1E+02 0.0037 30.9 8.9 56 18-75 114-171 (317)
293 1hdo_A Biliverdin IX beta redu 37.4 44 0.0015 29.6 5.5 72 18-96 4-75 (206)
294 3qk7_A Transcriptional regulat 37.4 67 0.0023 30.6 7.1 63 29-97 28-97 (294)
295 1xea_A Oxidoreductase, GFO/IDH 37.3 2E+02 0.0069 28.1 10.8 101 17-128 2-107 (323)
296 3kts_A Glycerol uptake operon 36.7 88 0.003 29.5 7.5 58 52-116 118-178 (192)
297 2iuy_A Avigt4, glycosyltransfe 36.2 51 0.0017 31.9 6.1 105 18-133 189-307 (342)
298 4had_A Probable oxidoreductase 36.1 52 0.0018 32.6 6.3 104 15-129 21-131 (350)
299 3btv_A Galactose/lactose metab 35.8 38 0.0013 35.4 5.3 116 5-129 6-140 (438)
300 4fxs_A Inosine-5'-monophosphat 35.8 3.7E+02 0.013 28.5 13.3 97 18-117 244-363 (496)
301 3m9w_A D-xylose-binding peripl 35.8 82 0.0028 30.1 7.5 66 28-97 19-92 (313)
302 2x4g_A Nucleoside-diphosphate- 35.7 53 0.0018 31.9 6.1 73 17-96 13-85 (342)
303 3e8x_A Putative NAD-dependent 35.7 36 0.0012 31.5 4.7 73 15-96 19-92 (236)
304 3e48_A Putative nucleoside-dip 35.6 1.1E+02 0.0037 28.9 8.3 72 18-96 1-73 (289)
305 3egc_A Putative ribose operon 35.6 1.2E+02 0.004 28.5 8.5 65 29-99 26-98 (291)
306 1p9l_A Dihydrodipicolinate red 35.5 1.4E+02 0.0047 28.9 9.0 73 18-96 1-77 (245)
307 2pyy_A Ionotropic glutamate re 35.5 87 0.003 27.5 7.1 53 11-71 107-159 (228)
308 1ydw_A AX110P-like protein; st 35.4 88 0.003 31.3 7.9 104 14-127 3-114 (362)
309 3k9c_A Transcriptional regulat 35.4 69 0.0024 30.4 6.8 62 30-97 30-97 (289)
310 1f0k_A MURG, UDP-N-acetylgluco 35.3 1.4E+02 0.0047 28.9 9.1 31 18-48 7-41 (364)
311 4fzr_A SSFS6; structural genom 35.2 66 0.0023 32.1 6.9 32 17-48 15-50 (398)
312 3slg_A PBGP3 protein; structur 35.1 41 0.0014 33.3 5.3 76 15-95 22-98 (372)
313 1ep3_A Dihydroorotate dehydrog 35.0 2.2E+02 0.0074 27.6 10.6 37 80-116 230-269 (311)
314 3tdn_A FLR symmetric alpha-bet 34.8 85 0.0029 29.7 7.3 66 49-116 36-107 (247)
315 1h1y_A D-ribulose-5-phosphate 34.7 63 0.0021 30.5 6.3 80 34-117 106-201 (228)
316 2qfm_A Spermine synthase; sper 34.7 1.4E+02 0.0049 30.8 9.4 54 18-73 212-277 (364)
317 3cea_A MYO-inositol 2-dehydrog 34.4 1.2E+02 0.0042 29.7 8.7 101 16-126 7-113 (346)
318 1u0t_A Inorganic polyphosphate 34.4 46 0.0016 33.2 5.5 98 17-133 4-130 (307)
319 2yrx_A Phosphoribosylglycinami 34.4 1.4E+02 0.0049 30.7 9.6 54 15-70 19-90 (451)
320 3sho_A Transcriptional regulat 34.0 1.6E+02 0.0055 26.1 8.7 93 19-119 41-140 (187)
321 2p2s_A Putative oxidoreductase 34.0 35 0.0012 33.8 4.6 104 16-129 3-111 (336)
322 1ka9_H Imidazole glycerol phos 33.9 30 0.001 31.8 3.8 33 17-49 2-34 (200)
323 3p9n_A Possible methyltransfer 33.8 83 0.0028 27.9 6.7 54 18-73 68-123 (189)
324 1lst_A Lysine, arginine, ornit 33.7 92 0.0032 27.8 7.1 52 17-71 111-162 (239)
325 3sgz_A Hydroxyacid oxidase 2; 33.7 2.2E+02 0.0075 29.2 10.6 83 32-117 208-301 (352)
326 1wl8_A GMP synthase [glutamine 33.6 30 0.001 31.5 3.7 72 20-95 3-79 (189)
327 3ohs_X Trans-1,2-dihydrobenzen 33.6 1E+02 0.0036 30.3 8.0 102 17-130 2-112 (334)
328 2fli_A Ribulose-phosphate 3-ep 33.6 81 0.0028 29.0 6.8 80 33-117 101-198 (220)
329 3v5n_A Oxidoreductase; structu 33.6 1.9E+02 0.0066 29.6 10.3 109 13-129 33-155 (417)
330 1qo2_A Molecule: N-((5-phospho 33.5 2E+02 0.0068 26.9 9.7 74 49-126 145-238 (241)
331 3tb6_A Arabinose metabolism tr 33.4 1.3E+02 0.0045 28.0 8.4 68 28-97 32-108 (298)
332 3k4h_A Putative transcriptiona 33.3 85 0.0029 29.4 7.0 64 29-98 31-102 (292)
333 2eqr_A N-COR1, N-COR, nuclear 33.3 35 0.0012 25.9 3.4 52 301-360 7-58 (61)
334 3czc_A RMPB; alpha/beta sandwi 33.2 2.1E+02 0.0072 23.8 9.2 80 17-106 18-104 (110)
335 2l2q_A PTS system, cellobiose- 33.0 89 0.0031 26.1 6.3 72 18-96 5-84 (109)
336 3sr7_A Isopentenyl-diphosphate 33.0 1E+02 0.0035 31.8 8.0 84 30-117 195-307 (365)
337 2l69_A Rossmann 2X3 fold prote 33.0 1E+02 0.0034 26.1 6.3 40 18-57 78-117 (134)
338 3huu_A Transcription regulator 33.0 1.4E+02 0.0047 28.4 8.6 62 30-97 46-115 (305)
339 3ruf_A WBGU; rossmann fold, UD 32.8 2.4E+02 0.0082 27.3 10.5 76 16-96 24-108 (351)
340 3o9z_A Lipopolysaccaride biosy 32.5 56 0.0019 32.4 5.8 106 17-131 3-119 (312)
341 3jy6_A Transcriptional regulat 32.5 1.5E+02 0.0051 27.6 8.6 62 29-97 25-94 (276)
342 2ift_A Putative methylase HI07 32.4 74 0.0025 28.9 6.2 66 18-86 77-147 (201)
343 3c3k_A Alanine racemase; struc 32.4 1.6E+02 0.0056 27.5 8.9 64 29-97 26-95 (285)
344 3e9m_A Oxidoreductase, GFO/IDH 32.2 1.1E+02 0.0037 30.2 7.9 104 16-129 4-112 (330)
345 2dri_A D-ribose-binding protei 32.1 1.4E+02 0.0048 27.7 8.4 64 29-96 19-90 (271)
346 1vzw_A Phosphoribosyl isomeras 32.0 1.4E+02 0.0048 28.0 8.3 67 49-117 147-222 (244)
347 1yxy_A Putative N-acetylmannos 32.0 1.7E+02 0.0057 27.3 8.8 73 41-117 133-215 (234)
348 2ydy_A Methionine adenosyltran 32.0 91 0.0031 29.8 7.1 32 17-48 2-33 (315)
349 1dbq_A Purine repressor; trans 31.9 1.1E+02 0.0037 28.7 7.5 66 29-97 25-96 (289)
350 2r6j_A Eugenol synthase 1; phe 31.8 1.7E+02 0.006 27.9 9.2 92 17-115 11-112 (318)
351 2hmt_A YUAA protein; RCK, KTN, 31.8 2.1E+02 0.0073 23.4 9.7 96 17-121 6-107 (144)
352 3qvq_A Phosphodiesterase OLEI0 31.8 2E+02 0.0068 27.4 9.4 38 88-128 210-247 (252)
353 3ovp_A Ribulose-phosphate 3-ep 31.6 2E+02 0.0069 27.3 9.4 70 63-134 134-219 (228)
354 1xq6_A Unknown protein; struct 31.6 1.8E+02 0.0062 26.3 8.9 73 16-96 3-77 (253)
355 3orh_A Guanidinoacetate N-meth 31.5 90 0.0031 29.2 6.8 54 18-73 84-138 (236)
356 1thf_D HISF protein; thermophI 31.4 1.7E+02 0.0057 27.5 8.8 67 49-117 31-103 (253)
357 3ceu_A Thiamine phosphate pyro 31.4 64 0.0022 30.0 5.7 66 46-116 94-171 (210)
358 3tr6_A O-methyltransferase; ce 31.3 1.5E+02 0.0053 26.7 8.3 57 17-73 89-150 (225)
359 3l9w_A Glutathione-regulated p 31.1 88 0.003 32.6 7.2 98 18-124 5-108 (413)
360 1gox_A (S)-2-hydroxy-acid oxid 31.1 2E+02 0.007 29.2 9.9 84 31-117 215-309 (370)
361 2iks_A DNA-binding transcripti 30.5 3.4E+02 0.012 25.3 11.3 64 29-97 38-109 (293)
362 3plv_C 66 kDa U4/U6.U5 small n 30.5 17 0.00059 22.5 0.9 7 514-520 14-20 (21)
363 2h3h_A Sugar ABC transporter, 30.5 2.1E+02 0.0071 27.2 9.4 65 29-97 18-91 (313)
364 3e3m_A Transcriptional regulat 30.5 1.1E+02 0.0038 30.0 7.6 61 29-95 88-156 (355)
365 2qjg_A Putative aldolase MJ040 30.4 2.5E+02 0.0084 26.8 9.9 58 52-116 170-236 (273)
366 1f0k_A MURG, UDP-N-acetylgluco 30.4 73 0.0025 30.9 6.2 52 79-131 264-322 (364)
367 2f6u_A GGGPS, (S)-3-O-geranylg 30.0 48 0.0016 32.2 4.6 60 52-119 24-86 (234)
368 1jvn_A Glutamine, bifunctional 29.9 1.7E+02 0.0058 31.7 9.5 76 50-127 454-542 (555)
369 3c1o_A Eugenol synthase; pheny 29.9 2.2E+02 0.0077 27.1 9.6 92 17-115 4-110 (321)
370 2fhp_A Methylase, putative; al 29.8 2.4E+02 0.008 24.3 9.0 66 18-86 68-138 (187)
371 2p10_A MLL9387 protein; putati 29.7 2.5E+02 0.0087 28.1 9.8 76 39-117 161-259 (286)
372 2p9j_A Hypothetical protein AQ 29.7 2E+02 0.007 24.4 8.4 38 80-117 42-81 (162)
373 1izc_A Macrophomate synthase i 29.7 2.5E+02 0.0086 28.5 10.2 83 44-129 46-137 (339)
374 3l4b_C TRKA K+ channel protien 29.6 1.6E+02 0.0056 26.9 8.2 33 19-52 2-34 (218)
375 1qap_A Quinolinic acid phospho 29.6 1.6E+02 0.0053 29.5 8.4 89 20-115 182-278 (296)
376 1p0k_A Isopentenyl-diphosphate 29.6 3.7E+02 0.013 26.8 11.5 84 31-117 168-280 (349)
377 3ntv_A MW1564 protein; rossman 29.5 1.3E+02 0.0043 27.9 7.5 65 17-87 95-163 (232)
378 3gdo_A Uncharacterized oxidore 29.5 92 0.0031 31.2 6.9 102 16-130 4-111 (358)
379 3kjx_A Transcriptional regulat 29.4 1.2E+02 0.004 29.6 7.5 62 28-95 85-154 (344)
380 3l49_A ABC sugar (ribose) tran 29.3 67 0.0023 30.2 5.5 65 29-97 23-95 (291)
381 2nli_A Lactate oxidase; flavoe 29.2 2.3E+02 0.0078 29.0 9.9 84 31-117 219-313 (368)
382 1viz_A PCRB protein homolog; s 29.1 53 0.0018 32.0 4.7 59 54-120 26-87 (240)
383 2vpi_A GMP synthase; guanine m 29.0 26 0.00088 33.2 2.4 32 17-48 24-55 (218)
384 1z0s_A Probable inorganic poly 29.0 24 0.00082 35.3 2.3 90 18-133 30-122 (278)
385 2fpo_A Methylase YHHF; structu 28.9 1.5E+02 0.005 26.9 7.6 65 18-86 78-144 (202)
386 1orr_A CDP-tyvelose-2-epimeras 28.7 1.9E+02 0.0066 27.7 8.9 54 18-72 2-60 (347)
387 1guu_A C-MYB, MYB proto-oncoge 28.6 1.2E+02 0.004 21.8 5.5 46 306-355 3-48 (52)
388 3dzc_A UDP-N-acetylglucosamine 28.5 1.7E+02 0.0057 29.7 8.7 41 88-133 326-366 (396)
389 1vrd_A Inosine-5'-monophosphat 28.5 4.5E+02 0.015 27.5 12.3 83 30-116 266-368 (494)
390 3h5l_A Putative branched-chain 28.2 1.2E+02 0.004 30.5 7.4 66 18-87 165-241 (419)
391 3dii_A Short-chain dehydrogena 28.2 2.4E+02 0.0082 26.2 9.2 77 17-96 2-83 (247)
392 3oa2_A WBPB; oxidoreductase, s 28.1 64 0.0022 32.0 5.3 105 17-130 3-119 (318)
393 2d9a_A B-MYB, MYB-related prot 28.0 1.1E+02 0.0038 22.6 5.5 48 304-355 6-53 (60)
394 3td9_A Branched chain amino ac 27.8 1.8E+02 0.0062 28.2 8.6 81 18-103 150-245 (366)
395 3e82_A Putative oxidoreductase 27.8 95 0.0032 31.2 6.6 101 16-129 6-112 (364)
396 2bw0_A 10-FTHFDH, 10-formyltet 27.7 1.4E+02 0.0049 30.1 7.9 32 12-45 17-49 (329)
397 2ioy_A Periplasmic sugar-bindi 27.7 1.3E+02 0.0043 28.3 7.1 64 29-96 19-90 (283)
398 2xxa_A Signal recognition part 27.7 71 0.0024 33.6 5.8 32 330-361 395-426 (433)
399 2i7c_A Spermidine synthase; tr 27.7 1.5E+02 0.0052 28.7 7.9 55 17-74 102-162 (283)
400 3iwp_A Copper homeostasis prot 27.6 1.2E+02 0.0041 30.4 7.1 75 41-118 39-132 (287)
401 3hcw_A Maltose operon transcri 27.6 2.1E+02 0.0073 26.9 8.9 63 29-97 30-100 (295)
402 3cvo_A Methyltransferase-like 27.5 57 0.0019 30.9 4.5 112 17-130 51-198 (202)
403 3nav_A Tryptophan synthase alp 27.4 51 0.0018 32.6 4.4 48 79-126 84-141 (271)
404 3hut_A Putative branched-chain 27.3 1.1E+02 0.0039 29.5 6.9 81 18-103 140-235 (358)
405 3c1a_A Putative oxidoreductase 27.3 1.1E+02 0.0037 29.9 6.8 101 16-129 9-114 (315)
406 3evn_A Oxidoreductase, GFO/IDH 27.2 49 0.0017 32.7 4.3 104 16-130 4-113 (329)
407 3snr_A Extracellular ligand-bi 27.2 88 0.003 30.1 6.1 82 18-104 136-232 (362)
408 1k1e_A Deoxy-D-mannose-octulos 27.2 3E+02 0.01 24.1 9.3 42 80-121 41-84 (180)
409 3o74_A Fructose transport syst 27.2 93 0.0032 28.7 6.0 65 29-98 20-92 (272)
410 2avd_A Catechol-O-methyltransf 27.1 1.5E+02 0.005 27.0 7.3 56 17-72 94-154 (229)
411 3c85_A Putative glutathione-re 26.9 2.2E+02 0.0074 25.1 8.3 90 17-116 63-158 (183)
412 3d8u_A PURR transcriptional re 26.9 2.4E+02 0.008 26.0 8.9 63 29-97 21-91 (275)
413 3tfw_A Putative O-methyltransf 26.9 1.5E+02 0.0051 27.9 7.5 57 17-74 88-147 (248)
414 2cjj_A Radialis; plant develop 26.8 68 0.0023 26.8 4.3 51 307-359 9-60 (93)
415 3vnd_A TSA, tryptophan synthas 26.8 46 0.0016 32.8 3.9 47 80-126 83-139 (267)
416 2fep_A Catabolite control prot 26.7 2E+02 0.0068 27.0 8.4 63 29-97 34-104 (289)
417 1qpz_A PURA, protein (purine n 26.7 1.2E+02 0.0043 29.4 7.1 66 29-97 76-147 (340)
418 1tqj_A Ribulose-phosphate 3-ep 26.6 73 0.0025 30.3 5.2 68 49-119 18-94 (230)
419 2xvy_A Chelatase, putative; me 26.6 34 0.0012 33.1 2.8 43 494-536 25-82 (269)
420 2rgy_A Transcriptional regulat 26.6 94 0.0032 29.4 6.0 63 29-97 26-99 (290)
421 1e6u_A GDP-fucose synthetase; 26.6 73 0.0025 30.6 5.3 55 17-73 3-65 (321)
422 2dwc_A PH0318, 433AA long hypo 26.5 1.3E+02 0.0044 30.7 7.5 32 17-49 19-50 (433)
423 1kjq_A GART 2, phosphoribosylg 26.4 1.3E+02 0.0046 29.9 7.5 32 17-49 11-42 (391)
424 4fxs_A Inosine-5'-monophosphat 26.4 80 0.0028 33.8 6.0 62 51-116 233-299 (496)
425 3ip3_A Oxidoreductase, putativ 26.2 77 0.0026 31.4 5.5 102 17-130 2-113 (337)
426 3rpe_A MDAB, modulator of drug 26.2 1E+02 0.0036 29.3 6.2 17 346-362 199-215 (218)
427 2y88_A Phosphoribosyl isomeras 26.1 1.2E+02 0.0042 28.3 6.7 66 50-117 151-225 (244)
428 1ujp_A Tryptophan synthase alp 26.1 1.5E+02 0.005 29.1 7.5 36 80-117 191-229 (271)
429 2nzl_A Hydroxyacid oxidase 1; 25.8 1.7E+02 0.006 30.2 8.3 69 46-117 259-336 (392)
430 2v25_A Major cell-binding fact 25.8 1.5E+02 0.0051 26.6 7.0 52 17-71 148-201 (259)
431 3clk_A Transcription regulator 25.8 1.5E+02 0.0052 27.7 7.4 62 29-96 26-96 (290)
432 2nv0_A Glutamine amidotransfer 25.7 50 0.0017 30.1 3.7 43 18-69 2-44 (196)
433 3w01_A Heptaprenylglyceryl pho 25.7 50 0.0017 32.2 3.8 50 62-117 35-87 (235)
434 3d54_D Phosphoribosylformylgly 25.6 37 0.0013 31.2 2.8 45 17-69 2-47 (213)
435 1h6d_A Precursor form of gluco 25.6 1E+02 0.0035 31.9 6.6 107 14-129 80-195 (433)
436 3axs_A Probable N(2),N(2)-dime 25.6 1E+02 0.0036 31.9 6.5 72 18-96 78-158 (392)
437 2wm3_A NMRA-like family domain 25.5 2.7E+02 0.0094 26.2 9.2 73 17-96 5-80 (299)
438 1wgx_A KIAA1903 protein; MYB D 25.5 60 0.0021 26.0 3.6 46 308-355 10-56 (73)
439 2fvy_A D-galactose-binding per 25.4 1.5E+02 0.0051 27.9 7.3 66 29-99 20-95 (309)
440 1zx0_A Guanidinoacetate N-meth 25.4 1.3E+02 0.0045 27.7 6.7 50 19-70 85-135 (236)
441 4g65_A TRK system potassium up 25.4 1.4E+02 0.0049 31.4 7.7 41 18-59 4-44 (461)
442 1sc6_A PGDH, D-3-phosphoglycer 25.3 3.8E+02 0.013 27.7 10.9 96 17-122 4-104 (404)
443 3p9z_A Uroporphyrinogen III co 25.2 35 0.0012 32.2 2.6 103 17-131 110-224 (229)
444 3d8t_A Uroporphyrinogen-III sy 25.2 2.6E+02 0.0088 27.0 9.0 104 17-132 155-281 (286)
445 3q0i_A Methionyl-tRNA formyltr 25.1 1.3E+02 0.0044 30.3 7.0 34 14-48 4-38 (318)
446 4avf_A Inosine-5'-monophosphat 25.0 1.1E+02 0.0036 32.8 6.6 65 49-116 229-297 (490)
447 3uug_A Multiple sugar-binding 24.9 1.3E+02 0.0043 28.8 6.7 66 29-98 21-94 (330)
448 2vsy_A XCC0866; transferase, g 24.9 1.7E+02 0.0059 30.5 8.2 107 17-133 406-521 (568)
449 3dbi_A Sugar-binding transcrip 24.9 3.2E+02 0.011 26.2 9.8 65 28-97 80-152 (338)
450 1pii_A N-(5'phosphoribosyl)ant 24.8 3.7E+02 0.013 28.4 10.7 84 30-117 146-236 (452)
451 2g76_A 3-PGDH, D-3-phosphoglyc 24.6 4.5E+02 0.015 26.3 11.0 99 15-123 24-125 (335)
452 3dqp_A Oxidoreductase YLBE; al 24.6 1.8E+02 0.006 26.2 7.3 31 18-48 1-31 (219)
453 3ajx_A 3-hexulose-6-phosphate 24.5 1.7E+02 0.0058 26.6 7.2 84 29-116 91-185 (207)
454 3pfn_A NAD kinase; structural 24.4 1.1E+02 0.0037 31.7 6.3 98 18-134 39-164 (365)
455 8abp_A L-arabinose-binding pro 24.4 1.4E+02 0.0046 28.2 6.7 64 29-96 20-90 (306)
456 3bt7_A TRNA (uracil-5-)-methyl 24.3 3.5E+02 0.012 27.1 10.1 77 18-96 236-326 (369)
457 2o6l_A UDP-glucuronosyltransfe 24.2 1.9E+02 0.0064 24.9 7.2 65 63-133 86-153 (170)
458 4egb_A DTDP-glucose 4,6-dehydr 24.2 1.7E+02 0.0057 28.4 7.5 32 16-47 23-56 (346)
459 3lyh_A Cobalamin (vitamin B12) 24.2 54 0.0019 27.9 3.4 41 495-536 25-65 (126)
460 3cbg_A O-methyltransferase; cy 24.1 2.2E+02 0.0074 26.3 8.0 56 17-72 97-157 (232)
461 3u81_A Catechol O-methyltransf 24.1 1.1E+02 0.0038 27.9 5.9 59 17-75 83-146 (221)
462 3enk_A UDP-glucose 4-epimerase 24.0 3.3E+02 0.011 26.0 9.6 34 15-48 3-36 (341)
463 3o07_A Pyridoxine biosynthesis 23.8 1.1E+02 0.0038 30.7 5.9 54 80-133 187-250 (291)
464 3duw_A OMT, O-methyltransferas 23.7 2.2E+02 0.0075 25.7 7.8 57 17-73 83-143 (223)
465 1i4n_A Indole-3-glycerol phosp 23.7 3.2E+02 0.011 26.5 9.3 85 29-117 138-230 (251)
466 3r75_A Anthranilate/para-amino 23.6 98 0.0033 34.4 6.2 72 17-95 446-528 (645)
467 3brs_A Periplasmic binding pro 23.6 1.5E+02 0.0053 27.5 6.9 63 31-97 27-99 (289)
468 2esr_A Methyltransferase; stru 23.5 1.7E+02 0.0057 25.3 6.7 51 18-71 55-108 (177)
469 3ju3_A Probable 2-oxoacid ferr 23.5 1.9E+02 0.0065 24.5 6.8 16 117-132 101-116 (118)
470 1t0b_A THUA-like protein; treh 23.5 79 0.0027 30.7 4.8 51 15-69 5-73 (252)
471 4fzr_A SSFS6; structural genom 23.4 1.1E+02 0.0039 30.3 6.2 54 80-133 311-367 (398)
472 3h5o_A Transcriptional regulat 23.4 3.6E+02 0.012 25.9 9.8 63 28-96 79-149 (339)
473 1o4u_A Type II quinolic acid p 23.4 67 0.0023 32.1 4.4 92 20-116 166-267 (285)
474 3dty_A Oxidoreductase, GFO/IDH 23.4 3.8E+02 0.013 27.0 10.3 107 15-129 10-130 (398)
475 3tha_A Tryptophan synthase alp 23.4 54 0.0018 32.2 3.6 54 80-133 79-139 (252)
476 1rd5_A Tryptophan synthase alp 23.3 1.1E+02 0.0038 29.3 5.9 47 79-126 82-134 (262)
477 3sju_A Keto reductase; short-c 23.2 2.9E+02 0.0099 26.3 8.9 82 12-96 19-109 (279)
478 3ajd_A Putative methyltransfer 23.2 2.7E+02 0.0091 26.6 8.7 53 18-72 109-165 (274)
479 1ii5_A SLR1257 protein; membra 23.2 1.9E+02 0.0066 25.3 7.2 48 17-71 116-163 (233)
480 3tjr_A Short chain dehydrogena 23.2 1E+02 0.0035 30.0 5.7 77 17-96 31-116 (301)
481 3g8r_A Probable spore coat pol 23.2 1.9E+02 0.0066 29.7 7.9 75 28-107 78-154 (350)
482 1wh5_A ZF-HD homeobox family p 23.1 2.1E+02 0.0072 22.6 6.6 62 300-361 15-78 (80)
483 3gv0_A Transcriptional regulat 23.1 2.1E+02 0.0071 26.8 7.7 62 30-97 29-98 (288)
484 4eg0_A D-alanine--D-alanine li 23.0 53 0.0018 32.2 3.6 54 17-72 13-74 (317)
485 4gnr_A ABC transporter substra 23.0 2.4E+02 0.0082 27.2 8.4 84 19-107 146-241 (353)
486 2yw3_A 4-hydroxy-2-oxoglutarat 23.0 4.5E+02 0.015 24.3 9.9 86 40-132 103-198 (207)
487 3ffs_A Inosine-5-monophosphate 23.0 1E+02 0.0035 32.2 5.9 62 51-116 146-211 (400)
488 2pju_A Propionate catabolism o 22.9 3.4E+02 0.012 25.8 9.2 53 17-69 12-69 (225)
489 3i23_A Oxidoreductase, GFO/IDH 22.9 70 0.0024 32.0 4.5 105 17-130 2-111 (349)
490 3okp_A GDP-mannose-dependent a 22.9 1.7E+02 0.0059 28.3 7.3 12 14-25 1-12 (394)
491 3r2g_A Inosine 5'-monophosphat 22.9 1.6E+02 0.0056 30.3 7.3 62 51-116 102-168 (361)
492 3gbv_A Putative LACI-family tr 22.8 2.7E+02 0.0091 25.9 8.5 66 29-98 27-104 (304)
493 3f4l_A Putative oxidoreductase 22.8 53 0.0018 32.8 3.5 103 17-130 2-111 (345)
494 3oid_A Enoyl-[acyl-carrier-pro 22.7 2E+02 0.0068 27.1 7.5 79 15-96 2-90 (258)
495 3osu_A 3-oxoacyl-[acyl-carrier 22.7 2.5E+02 0.0084 26.0 8.1 79 15-96 2-90 (246)
496 4amg_A Snogd; transferase, pol 22.7 1.4E+02 0.0049 29.3 6.8 33 17-49 22-58 (400)
497 3fhl_A Putative oxidoreductase 22.6 90 0.0031 31.3 5.3 102 16-130 4-111 (362)
498 4e4t_A Phosphoribosylaminoimid 22.6 2.5E+02 0.0086 28.8 8.8 32 16-48 34-65 (419)
499 3aon_B V-type sodium ATPase su 22.5 62 0.0021 27.9 3.4 71 17-96 2-77 (115)
500 2gas_A Isoflavone reductase; N 22.5 3.4E+02 0.012 25.5 9.3 73 17-96 2-84 (307)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.94 E-value=4.3e-27 Score=187.26 Aligned_cols=61 Identities=41% Similarity=0.652 Sum_probs=58.0
Q ss_pred CCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhhccc
Q 009017 302 ASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 362 (546)
Q Consensus 302 ~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~~~ 362 (546)
.+++|++||+|||++||+||++||.|+||||.||++|||+|||++||||||||||+++++.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4677889999999999999999999999999999999999999999999999999998874
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.90 E-value=1e-23 Score=191.89 Aligned_cols=118 Identities=14% Similarity=0.295 Sum_probs=109.9
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----- 87 (546)
|.+.+|||||||++..+..++.+|+..||. |.+|.++.+|++.+.+ ..||+||+|+.||+ +||++++++||
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~-mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPG-MQGIDLLKNIRADEEL 85 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCC
Confidence 345689999999999999999999999997 6689999999999998 78999999999999 99999999996
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|||++|+..+.+...+|+++||+|||.|||+.++|..+|+++++|
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999987754
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=3.6e-20 Score=161.11 Aligned_cols=114 Identities=21% Similarity=0.310 Sum_probs=107.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
+.+||||||++..+..++..|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~-~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPV-MDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSS-SCHHHHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCC-CcHHHHHHHHHhcccccCCC
Confidence 3589999999999999999999999999999999999999988 78999999999999 99999999985 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+.+...++++.||++||.||++.++|..+|+++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999987763
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=7e-20 Score=162.20 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=109.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
++.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPG-IDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSGGGTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCcCCc
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999886 58
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|||++|+..+.....+++++||++||.||++.++|..+|++++++.
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999888654
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=6e-20 Score=158.93 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=107.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
..+||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~-~~g~~~~~~lr~~~~~~ii~ 78 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPN-KDGVEVCREVRKKYDMPIIM 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTT-THHHHHHHHHHTTCCSCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEE
Confidence 3689999999999999999999999999999999999999998 78999999999999 99999999987 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887764
No 6
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.8e-19 Score=176.29 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=132.1
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
.+.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~ 96 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPG-MDGFGVLRRLRADGIDA 96 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHTTCCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 3446899999999999999999999999999999999999999988 68999999999999 99999999997 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcC----CCc-------------------ccCC
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG----GSA-------------------LSDS 146 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~----~~~-------------------~~~~ 146 (546)
|||++|+..+.+...+++++||++||.||++.++|..+|+.++++..... ... ....
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVS 176 (250)
T ss_dssp CEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETTEEEETTTCCEEETTEEEC
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECCEEEeccccEEEECCEEEe
Confidence 99999999999999999999999999999999999999999988642210 000 0125
Q ss_pred chhhHHHHHHHHhhhhccchhhhhhhc
Q 009017 147 LKPVKESVVSMLHLKLENGESKNEKSE 173 (546)
Q Consensus 147 Lt~re~evl~ll~l~~~l~~~e~ev~~ 173 (546)
||++|.+++.++...........++..
T Consensus 177 LT~rE~~iL~~l~~~~~~~~s~~~i~~ 203 (250)
T 3r0j_A 177 LSPTEFTLLRYFVINAGTVLSKPKILD 203 (250)
T ss_dssp CCHHHHHHHHHHHHTTTCCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCceEcHHHHHH
Confidence 899999999998765444344444433
No 7
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.81 E-value=9.4e-20 Score=170.24 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=110.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
|.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGN-DSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETT-EESHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCC-ccHHHHHHHHHhcCCCCC
Confidence 446799999999999999999999999999999999999999988 78999999999999 99999999987 699
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
||++|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 82 ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 82 ILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988876543
No 8
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=6.9e-19 Score=154.42 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=109.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
++++||||||++..+..++.+|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~i 78 (132)
T 3crn_A 2 SLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPD-MEGTELLEKAHKLRPGMKK 78 (132)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSEE
T ss_pred CccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCcE
Confidence 35799999999999999999999999999999999999999988 68999999999999 99999999886 6899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|++|+..+.+...+++++||++||.||++.++|..+|++++++..
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998876543
No 9
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=1.2e-18 Score=154.11 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=111.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+......||+||+|+.|++ ++|+++++.|+ .+||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPHMAV 80 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeE
Confidence 468999999999999999999999999999999999999999831168999999999999 99999999987 6999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
|++|+..+.+...+++++||++||.||++.++|..+|+.++++....
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543
No 10
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.80 E-value=1.1e-21 Score=176.25 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=100.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIv 93 (546)
.+|||||||++.++..++.+|+..||+|+ +|.++++|++.+.+ ..||+||+|+.||+ ++|+++++.|+ ++|||+
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~-~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDG-EPSYPVADILAERNVPFIF 84 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSS-CCSHHHHHHHHHTCCSSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHcCCCCEEE
Confidence 57999999999999999999999999986 79999999999999 78999999999999 99999999997 899999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+|++.+... +.++|+++||.|||+.++|..+|++++
T Consensus 85 lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 85 ATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp BCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 999877554 346899999999999999999877654
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.80 E-value=8.1e-19 Score=158.55 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=110.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPE-MDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCCC
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999886 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
||++|+..+.+...+++++||++||.||++.++|..+|++++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887643
No 12
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.80 E-value=1.6e-18 Score=150.37 Aligned_cols=114 Identities=16% Similarity=0.307 Sum_probs=107.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPD-MSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTT-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999988 68999999999999 99999999986 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
++|+..+.+...++++.||++||.||++.++|..+|+++++
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887764
No 13
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.80 E-value=2.6e-19 Score=169.07 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=123.7
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
|+...+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 1 M~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 1 MTAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPG-MSGIELQEQLTAISDGI 77 (208)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSS-SCHHHHHHHHHHTTCCC
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 3456799999999999999999999999999999999999999988 78999999999999 99999999986 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------CcccCCchhhHHHHHHHHhhh
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--------SALSDSLKPVKESVVSMLHLK 161 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~--------~~~~~~Lt~re~evl~ll~l~ 161 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...... ......|+.++.+++.++...
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l~~g 157 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRG 157 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTT
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 999999999888899999999999999999999999999988865322110 001235788888888877544
No 14
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.80 E-value=1.5e-18 Score=156.01 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=113.9
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----C
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~ 88 (546)
.+..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS--REVDLVISAAHLPQ-MDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHCTT
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCc-CcHHHHHHHHHhHCCC
Confidence 44557899999999999999999999999999999999999999998 78999999999999 99999999987 6
Q ss_pred CcEEEEecCCChHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 009017 89 LPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aG-AdDYL~KP~~~eeL~~~I~~vlrr~~~ 137 (546)
+|||++|+..+.+...++++.| |++||.||++.++|..+|++++++...
T Consensus 87 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 87 TTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp SEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999 999999999999999999999886643
No 15
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.1e-18 Score=156.12 Aligned_cols=116 Identities=21% Similarity=0.330 Sum_probs=104.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--------
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------- 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-------- 87 (546)
+.++||||||++..+..++.+|+..||.|..+.++++|++.+.. ..||+||+|+.||+ ++|+++++.|+
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPG-MNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHHHTTCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhccCC
Confidence 45799999999999999999999999999999999999999988 78999999999999 99999999885
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.+|||++|+..+.+...+++++||++||.||++.++|..+|+.+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999999999998876543
No 16
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.79 E-value=9.4e-19 Score=166.88 Aligned_cols=143 Identities=16% Similarity=0.314 Sum_probs=125.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~lr~~~~~~~ii 78 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPV-HDGWEILKSMRESGVNTPVL 78 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999986 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc-------------------ccCCchhhHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKES 153 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~~-------------------~~~~Lt~re~e 153 (546)
++|+..+.+...+++++||++||.||++.++|..+|+.++++........ ....||++|.+
T Consensus 79 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 158 (225)
T 1kgs_A 79 MLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQ 158 (225)
T ss_dssp EEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHH
T ss_pred EEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEECCEEEecCHHHHH
Confidence 99999999999999999999999999999999999999988753211100 01248999999
Q ss_pred HHHHHhhhh
Q 009017 154 VVSMLHLKL 162 (546)
Q Consensus 154 vl~ll~l~~ 162 (546)
++.++....
T Consensus 159 vL~~l~~~~ 167 (225)
T 1kgs_A 159 ILEYLVMNK 167 (225)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 999887663
No 17
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.79 E-value=1.3e-18 Score=152.18 Aligned_cols=115 Identities=16% Similarity=0.305 Sum_probs=105.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
.++||||||++..+..++.+|++.||. |..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~-~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPE-MNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSS-SCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCC
Confidence 478999999999999999999999996 88999999999988762 36999999999999 99999999886 48
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||++|+..+.....+++++||++||.||++.++|..+|+.++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987763
No 18
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.79 E-value=2.6e-18 Score=147.04 Aligned_cols=114 Identities=16% Similarity=0.322 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 77 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999988 78999999999999 99999999886 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
+|+..+.....++++.||++||.||++.++|..+|++++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765
No 19
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.79 E-value=3.3e-19 Score=175.42 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=128.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPII 92 (546)
.+++||||||++.++..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~-~~G~~l~~~lr~~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE--DHPDLILLDLGLPD-FDGGDVVQRLRKNSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEEECCSCH-HHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCCCCCEE
Confidence 35799999999999999999999999999999999999999988 78999999999999 99999999997 69999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC---------C-------cccCCchhhHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG---------S-------ALSDSLKPVKESVVS 156 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~---------~-------~~~~~Lt~re~evl~ 156 (546)
++|+..+.+.+.+++++||++||.||++.++|..+|+.++++...... . .....||+||.+++.
T Consensus 113 ~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ 192 (249)
T 3q9s_A 113 VLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILA 192 (249)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHH
Confidence 999999999999999999999999999999999999988764321100 0 002248999999999
Q ss_pred HHhhhhccchhhhhh
Q 009017 157 MLHLKLENGESKNEK 171 (546)
Q Consensus 157 ll~l~~~l~~~e~ev 171 (546)
++...........++
T Consensus 193 ll~~g~~~~~s~~eI 207 (249)
T 3q9s_A 193 LLIRQPGRVYSRQEI 207 (249)
T ss_dssp HHHHSTTCCCCHHHH
T ss_pred HHHHCCCceEcHHHH
Confidence 987663333333333
No 20
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.79 E-value=1.4e-18 Score=153.70 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPII 92 (546)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~ii 79 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSD-GDGWTLCKKIRNVTTCPIV 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHccCCCCCEE
Confidence 35799999999999999999999999999999999999999988 68999999999999 99999999997 58999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
++|+..+.+...++++.||++||.||++.++|..+|++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 80 YMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887654
No 21
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.2e-18 Score=154.49 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=108.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~ii~ 81 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPD-MSGEDVLDWINQNDIPTSVII 81 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999899999999999999999988 68999999999999 99999999986 589999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
+|+..+.+...++++.||++||.||++.++|..+|++++++..
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 22
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.79 E-value=3.1e-18 Score=147.12 Aligned_cols=114 Identities=11% Similarity=0.240 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPD-ENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEEEE
Confidence 689999999999999999999999999999999999999988 67999999999999 99999999986 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|+..+.....+++++||++||.||++.++|..+|++++++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765
No 23
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.79 E-value=1.4e-18 Score=150.02 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=106.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVI 79 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEE
Confidence 4689999999999999999999999999999999999999988 67999999999999 99999999986 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
++|+..+.+...++++.||++||.||++.++|..+|++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 80 IMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp EEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred EEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888765
No 24
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.79 E-value=2.7e-18 Score=153.89 Aligned_cols=119 Identities=13% Similarity=0.272 Sum_probs=107.2
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhh---------cCCCCeeEEEEecCCCCCCCHHHH
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFS---------DKPENFHVAIVEVTTSNTDGSFKF 82 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~---------~~~~~pDLVIlDl~mp~~~dGlel 82 (546)
|++.++||||||++..+..++.+|+..|| .|..+.++.+|++.+. . ..||+||+|+.|++ ++|+++
T Consensus 1 M~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~--~~~dliilD~~l~~-~~g~~~ 77 (152)
T 3heb_A 1 MSLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSA--GRAQLVLLDLNLPD-MTGIDI 77 (152)
T ss_dssp ----CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGT--TCBEEEEECSBCSS-SBHHHH
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccccccccc--CCCCEEEEeCCCCC-CcHHHH
Confidence 34568999999999999999999999998 8999999999999995 4 57999999999999 999999
Q ss_pred HHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 83 LETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 83 lr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
++.|+ .+|||++|+..+.+...++++.||++||.||++.++|..+|+++.+..
T Consensus 78 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 78 LKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99886 589999999999999999999999999999999999999999886544
No 25
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.79 E-value=3.7e-18 Score=146.80 Aligned_cols=115 Identities=13% Similarity=0.246 Sum_probs=108.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
..+||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHHCCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCCcEEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 699999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
+|+..+.....++++.||++||.||++.++|..+|++++++
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888765
No 26
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.79 E-value=2.3e-18 Score=146.88 Aligned_cols=114 Identities=21% Similarity=0.393 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
.+||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPE-IDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHCCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCC-CCHHHHHHHHHhCCCCCEEEE
Confidence 589999999999999999999999999999999999999988 67999999999999 99999999886 7999999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|+..+......+++.||++||.||++.++|..++++++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999887653
No 27
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.79 E-value=8.8e-19 Score=154.38 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=109.5
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------ 87 (546)
|+.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 3 LAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPD-QDGVSLIRALRRDSRTR 79 (140)
T ss_dssp --CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHTSGGGT
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCcccC
Confidence 3446899999999999999999999999999999999999999998 78999999999999 99999999886
Q ss_pred CCcEEEEecCCChHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMM-KCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~-~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
.+|||++|+..+..... .+++.||++||.||++.++|..+|++++++..
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 80 DLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp TCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 58999999988777776 89999999999999999999999999988754
No 28
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.78 E-value=3.4e-18 Score=151.58 Aligned_cols=121 Identities=15% Similarity=0.255 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------ 87 (546)
++++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPI-ANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGG-GCHHHHHHHHHSSSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhccccc
Confidence 3579999999999999999999999987 8899999999999998 78999999999999 99999999886
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHHhcC
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAFNAG 139 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~-~~eeL~~~I~~vlrr~~~~~ 139 (546)
.+|||++|+..+.+...+++++||++||.||+ +.++|..+|++++++.....
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~ 133 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVN 133 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999999999 99999999999998876543
No 29
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.78 E-value=1.8e-18 Score=150.73 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------ 87 (546)
|+++++||||||++..+..++.+|+ .||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+
T Consensus 1 M~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 1 MSLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA--HPPDVLISDVNMDG-MDGYALCGHFRSEPTLK 76 (133)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHSTTTT
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCccC
Confidence 4556899999999999999999999 89999999999999999998 78999999999999 99999999886
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
.+|||++|+..+... ..+++.||++||.||++.++|..+|++++++..
T Consensus 77 ~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp TCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 589999999888777 899999999999999999999999999987653
No 30
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.78 E-value=1.5e-18 Score=153.02 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=109.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC----CC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DL 89 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr----~i 89 (546)
+.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+.|++. ++|+++++.|+ .+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC
Confidence 445799999999999999999999999999999999999999988 789999999999873 58999999987 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++....
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999887653
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.78 E-value=2.3e-18 Score=147.54 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=105.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
+++||||||++..+..++..|+..||. +..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~i 78 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKI 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeE
Confidence 468999999999999999999999999 4589999999999988 67999999999999 99999999986 6899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
|++|+..+.....++++.||++||.||++.++|..+|++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887653
No 32
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.78 E-value=6.6e-18 Score=146.21 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=107.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
.++||||||++..+..++..|+..|| .|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPN-MDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSS-SCHHHHHHHHHC--CCTTC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCC
Confidence 46899999999999999999999999 68899999999999988 68999999999999 99999999986 47
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988764
No 33
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.78 E-value=2.1e-18 Score=152.05 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=103.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhc---CCCCeeEEEEecCCCCCCCHHHHHHHhC-----
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSD---KPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~-V~~ass~~eALe~L~~---~~~~pDLVIlDl~mp~~~dGlellr~Lr----- 87 (546)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ....||+||+|+.||+ ++|+++++.|+
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 80 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-VDGLLSTKMIRRDLGY 80 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-SCHHHHHHHHHHHSCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCC-CChHHHHHHHHhhcCC
Confidence 368999999999999999999998985 7899999999998864 0025899999999999 99999999886
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|||++|+..+.+...+++++||++||.||++.++|..+|++++.
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999887654
No 34
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.78 E-value=2.5e-18 Score=149.56 Aligned_cols=117 Identities=16% Similarity=0.285 Sum_probs=101.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC------CHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 35799999999999999999999999999999999999999988 78999999999999 99999999987 6899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~-~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+.+...++++.||++||.||+ +.++|..+|++++++.
T Consensus 83 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 83 LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999 8999999998887643
No 35
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=2.5e-19 Score=157.52 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=108.1
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
.+..+.+||||||++..+..++.+|+..| |.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+
T Consensus 10 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~ 86 (135)
T 3snk_A 10 TPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGD-LLGKPGIVEARALWA 86 (135)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTG-GGGSTTHHHHHGGGT
T ss_pred cCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCC-chHHHHHHHHHhhCC
Confidence 34456799999999999999999999999 999999999999999988 78999999999999 99999999987
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.+|||++|+..+.+...+++++||++||.||++.++|..+|+++++.
T Consensus 87 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 69999999999999999999999999999999999999998877653
No 36
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.78 E-value=3.2e-18 Score=162.64 Aligned_cols=144 Identities=12% Similarity=0.178 Sum_probs=123.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+++||||||++..+..++.+|+.. +|.+ ..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTT-SCHHHHHHHHHHSCCCSE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCc
Confidence 579999999999999999999987 5887 689999999999988 67999999999999 99999999997 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC-----------------CcccCCchhhHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-----------------SALSDSLKPVKES 153 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~-----------------~~~~~~Lt~re~e 153 (546)
||++|+..+.+...++++.||++||.||++.++|..+|+.++++...... ......||++|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 99999999999999999999999999999999999999988764211000 0112458899999
Q ss_pred HHHHHhhhhc
Q 009017 154 VVSMLHLKLE 163 (546)
Q Consensus 154 vl~ll~l~~~ 163 (546)
++.++.....
T Consensus 162 vl~~l~~g~s 171 (215)
T 1a04_A 162 ILKLIAQGLP 171 (215)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9888876543
No 37
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.78 E-value=5e-18 Score=148.80 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHhC-----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK-----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~-pDLVIlDl~mp~~~dGlellr~Lr-----~i 89 (546)
.+.+||||||++..+..++.+|+..||.|..+.++.+++..+.. .. ||+||+|+.|++ ++|+++++.|+ .+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ 82 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY--QKRIGLMITDLRMQP-ESGLDLIRTIRASERAAL 82 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHTSTTTTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh--CCCCcEEEEeccCCC-CCHHHHHHHHHhcCCCCC
Confidence 46799999999999999999999999999999999999999987 55 999999999999 99999999886 47
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|+++....
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 83 SIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999887654
No 38
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.77 E-value=2.6e-18 Score=150.79 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=111.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999987 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
++|+..+.+...+++++||++||.||++.++|..+|++++++....
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998876543
No 39
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.77 E-value=2.5e-18 Score=151.01 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=105.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+++||||||++..+..++.+|+..| +.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPG-MTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHHHCCCCc
Confidence 4689999999999999999999876 456789999999999988 67999999999999 99999999986 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
||++|+..+.+...++++.||++||.||++.++|..+|++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998877643
No 40
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.77 E-value=1.2e-18 Score=151.13 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=104.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST--RGYDAVFIDLNLPD-TSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHSCCSSCC
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhhccCCC
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999886 48
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+... ..++..||++||.||++.++|.++++...+.
T Consensus 79 ~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 9999999988877 8899999999999999999999998876654
No 41
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.77 E-value=4.1e-18 Score=152.71 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
.|++||||||++..+..++.+|+..| +.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPV-KTGLEVLEWIRSEKLET 95 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSS-SCHHHHHHHHHHTTCSC
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 46899999999999999999999887 778899999999999998 78999999999999 99999999987 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999887754
No 42
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.77 E-value=5.3e-18 Score=152.13 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=108.9
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHhC----C
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK----D 88 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~-pDLVIlDl~mp~~~dGlellr~Lr----~ 88 (546)
|+++++||||||++..+..+..+|+. ||.|..+.++.+|++.+.. .. ||+||+|+.|++ ++|+++++.|+ .
T Consensus 1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 76 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK--SDPFSVIMVDMRMPG-MEGTEVIQKARLISPN 76 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH--SCCCSEEEEESCCSS-SCHHHHHHHHHHHCSS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCC
Confidence 45678999999999999999999976 8999999999999999987 44 699999999999 99999999987 6
Q ss_pred CcEEEEecCCChHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aG-AdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
+|||++|+..+.+...++++.| |++||.||++.++|..+|+.++++..
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999887654
No 43
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.77 E-value=1.4e-18 Score=153.36 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=108.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC-----
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK----- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr----- 87 (546)
.++++||||||++..+..++.+|+. .||+|..+.++.+|++.+... ..||+||+|+.|+ + ++|+++++.|+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVE-KEGLEVLSAIRNNSRT 79 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSH-HHHHHHHHHHHHSGGG
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCC-CcHHHHHHHHHhCccc
Confidence 3468999999999999999999999 899999999999999998762 3699999999999 8 99999998886
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
.+|||++|+..+.+...+++++||++||.||++.++|..+|++++++..
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 5999999999999999999999999999999999999999998876543
No 44
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=3.3e-18 Score=151.08 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=108.8
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
|.++++||||||++..+..++..|+..||+|..+.++.+|++.+.. ..||+||+|+ +++ ++|+++++.|+ .+
T Consensus 1 M~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~~~ 76 (142)
T 2qxy_A 1 MSLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEG-EESLNLIRRIREEFPDT 76 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTT-HHHHHHHHHHHHHCTTC
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCC-CcHHHHHHHHHHHCCCC
Confidence 3456899999999999999999999999999999999999999998 7899999999 999 99999999986 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++.
T Consensus 77 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 77 KVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999887654
No 45
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.77 E-value=2.3e-18 Score=156.05 Aligned_cols=115 Identities=18% Similarity=0.273 Sum_probs=108.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCC--CeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPE--NFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~--~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
.++++||||||++..+..++.+|+..||.|+ .+.++.+|++.+.. . .||+||+|+.|++ ++|+++++.|+
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~-~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPK-MDGITCLSNIMEFDK 110 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSS-SCHHHHHHHHHHHCT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCC-ccHHHHHHHHHhhCC
Confidence 3467999999999999999999999999998 99999999999988 6 7899999999999 99999999997
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
.+|||++|+..+.+...+++++||++||.||++.++|..+|++++
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999988765
No 46
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.77 E-value=4.6e-18 Score=145.22 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=107.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvL 94 (546)
++||||||++..+..++..|+..||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~~ 78 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAVPVIVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhCCCCcEEEE
Confidence 689999999999999999999999999999999999999887 67999999999999 99999999986 6899999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|+..+.....++++.||++||.||++.++|..+|+.++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888764
No 47
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.77 E-value=3.3e-18 Score=148.33 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=106.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------C
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~ 88 (546)
.+++||||||++..+..++..|+..|| .|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPK-MDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCS-SCHHHHHHHHTTCTTSTT
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCC-CCHHHHHHHHhcCccccC
Confidence 357899999999999999999999999 78899999999999988 68999999999999 99999999986 4
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999987764
No 48
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=5.2e-18 Score=148.81 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHhC---
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK--- 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp-----~~~dGlellr~Lr--- 87 (546)
.+++||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.++ + ++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~-~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNG-NEGLFWLHEIKRQY 78 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC------CCHHHHHHHHHHHC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCC-ccHHHHHHHHHhhC
Confidence 46799999999999999999999999999999999999999998 7899999999999 8 99999999986
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.+|||++|+..+.+...++++.||++||.||++.++|..+|++++++
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999887754
No 49
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.77 E-value=8.6e-18 Score=147.63 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=108.2
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEA-MDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~-~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---- 87 (546)
++.+++||||||++..+..++.+|+. .||. |..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVG-MDGFSICHRIKSTPA 81 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTT-SCHHHHHHHHHTSTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCC-CcHHHHHHHHHhCcc
Confidence 34568999999999999999999999 8999 8899999999999998 78999999999999 99999999886
Q ss_pred --CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 --~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.+|||++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999999999999999999887643
No 50
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.77 E-value=4e-18 Score=163.36 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=129.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.++||||||++..+..+...|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPV-LDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999986 69999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh--cC-CC-c------------------ccCCchhh
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN--AG-GS-A------------------LSDSLKPV 150 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~--~~-~~-~------------------~~~~Lt~r 150 (546)
++|+..+.+...+++++||++||.||++.++|..+|+.++++... .. .. . ....||++
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 163 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKR 163 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHH
Confidence 999999888888999999999999999999999999999887643 11 10 0 01348899
Q ss_pred HHHHHHHHhhhhccchhhhhhh
Q 009017 151 KESVVSMLHLKLENGESKNEKS 172 (546)
Q Consensus 151 e~evl~ll~l~~~l~~~e~ev~ 172 (546)
|.+++.++...........++.
T Consensus 164 E~~vL~~l~~g~~~~~s~~~Ia 185 (233)
T 1ys7_A 164 EFDLLAVLAEHKTAVLSRAQLL 185 (233)
T ss_dssp HHHHHHHHHHTTTCCBCHHHHH
T ss_pred HHHHHHHHHhCCCCeEcHHHHH
Confidence 9999998877643333333333
No 51
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.76 E-value=3.4e-18 Score=151.45 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC---CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr---~iPII 92 (546)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... ..||+||+|+.|| + ++|+++++.|+ .+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG-MDGVQTALAIQQISELPVV 82 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS-CCHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC-CCHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999999999999999999999999752 4799999999998 6 89999999887 79999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
++|+..+.+...+++++||++||.||++.++|..+|++++++....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999988888889999999999999999999999999998876543
No 52
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.76 E-value=1.9e-17 Score=148.48 Aligned_cols=118 Identities=11% Similarity=0.152 Sum_probs=106.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC-----CCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK-----PENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~-----~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+ ++|+++++.|+
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~-~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-KDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-SCHHHHHHHHHHC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCC-CcHHHHHHHHHhC
Confidence 47899999999999999999998887 788999999999998741 036999999999999 99999999886
Q ss_pred ----CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+++++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999887654
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.76 E-value=7.2e-18 Score=147.48 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=107.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPK-LDGIEVCKQLRQQKLMFPIL 79 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHcCCCCCCEE
Confidence 4689999999999999999999999999999999999999988 67999999999999 99999999986 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|+..+......+++.||++||.||++.++|..+|+.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 80 MLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999998888888999999999999999999999999887754
No 54
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=4.3e-18 Score=163.13 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=124.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~ii~ 80 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPG-MSGTDVCKQLRARSSVPVIM 80 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHHCSCSEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEE
Confidence 4799999999999999999999999999999999999999988 67999999999999 99999999987 799999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC----C-------------------cccCCchhh
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----S-------------------ALSDSLKPV 150 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~----~-------------------~~~~~Lt~r 150 (546)
+|+..+......+++.||++||.||++.++|..+|++++++...... . .....||.+
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 160 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLK 160 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHH
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHH
Confidence 99998888899999999999999999999999999998876321110 0 001358899
Q ss_pred HHHHHHHHhhh
Q 009017 151 KESVVSMLHLK 161 (546)
Q Consensus 151 e~evl~ll~l~ 161 (546)
|.+++.++...
T Consensus 161 E~~vL~~l~~~ 171 (230)
T 2oqr_A 161 EFDLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988765
No 55
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.76 E-value=1.8e-18 Score=149.32 Aligned_cols=114 Identities=14% Similarity=0.263 Sum_probs=106.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
+++||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPG-GSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETT-EEHHHHHHHHHTSTTTTTSC
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhCcccCCCC
Confidence 4689999999999999999999999999999999999999988 68999999999999 99999999885 479
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+.+...++++.||++||.||++.++|..+|+++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 79 VVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 9999999888889999999999999999999999999988765
No 56
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.76 E-value=4.7e-18 Score=148.14 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=105.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~i 89 (546)
.++||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~ 78 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPH-LDGLAVLERIRAGFEHQP 78 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHHCSSCC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCC
Confidence 368999999999999999999987 89876 89999999999988 67999999999999 99999999885 47
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999887653
No 57
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.76 E-value=1.1e-17 Score=166.18 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHhC------C
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK------D 88 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~-~pDLVIlDl~mp~~~dGlellr~Lr------~ 88 (546)
..++||||||++..+..+...|+..||.|..+.++.+|++.+.. . .||+||+|+.||+ ++|+++++.|+ .
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~-~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ--HPAIRLVLVDYYMPE-IDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHHHCCTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCC-CCHHHHHHHHHhccCCCC
Confidence 35799999999999999999999999999999999999999987 4 4999999999999 99999999986 4
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
+|||++|+..+.....+++++||+|||.||++.++|..+|++++++..
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 889999999999999999999999999999999999999999988664
No 58
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.76 E-value=1.2e-17 Score=147.50 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=103.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ 79 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIMMEP-MDGWETLERIKTDPATRDIP 79 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCC
Confidence 4799999999999999999999999999999999999999988 68999999999999 99999999886 579
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+......++.+|+++||.||++.++|..+|+.+++
T Consensus 80 ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 80 VLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp EEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred EEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 9999998776666666777889999999999999999887764
No 59
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.76 E-value=5.7e-18 Score=150.37 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
++++||||||++..+..+...|+..||+|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPK-ISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCC
Confidence 35799999999999999999999999999999999999999988 68999999999999 99999999886 58
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++..
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887653
No 60
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.75 E-value=2e-17 Score=148.60 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
.+++||||||++..+..+...|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcE
Confidence 35799999999999999999999999999999999999999998 67999999999999 99999999986 6999
Q ss_pred EEEecCCChHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aG-AdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|++|+..+.+...++++.| |++||.||++.++|..+|++++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999989999999998 99999999999999999999887654
No 61
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.75 E-value=8.7e-18 Score=144.37 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=99.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPI 91 (546)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCccccCCcE
Confidence 489999999999999999999999999999999999999988 67999999999999 99999999886 5799
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|++|+..+......+++.||++||.||++.++|..+|+++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 79 VAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 999998888888999999999999999999999999887653
No 62
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.75 E-value=1.9e-17 Score=145.18 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC---CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr---~iP 90 (546)
.+++||||||++..+..++..|+..||.|. .+.++.+|++.+.. ..||+||+|+.++ + ++|+++++.|+ .+|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~-~~g~~~~~~l~~~~~~~ 84 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGA-LDGVETAARLAAGCNLP 84 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSS-SCHHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCC-CCHHHHHHHHHhCCCCC
Confidence 457999999999999999999999999999 69999999999988 6799999999998 8 89999999886 799
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
||++|+..+.+...++++.||++||.||++.++|..+|++++++....
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 85 IIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp EEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999998776543
No 63
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.75 E-value=2.3e-18 Score=150.23 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=104.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
++||||||++..+..++.+|++.||.+. .+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCC-CChHHHHHHHHhcCCCCeEE
Confidence 6899999999999999999999999988 89999999999988 78999999999999 99999999997 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|+..+.+...++++.||++||.||++.++|..+|+.++++
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999988999999999999999999999999999887754
No 64
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.75 E-value=4.6e-17 Score=141.81 Aligned_cols=121 Identities=11% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCC-----CCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP-----ENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~-----~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
+++||||||++..+..+...|+..|| .|..+.++.+|++.+.... ..||+||+|+.|++ ++|+++++.|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHHcC
Confidence 46899999999999999999999998 8999999999999998510 36999999999999 99999999886
Q ss_pred ----CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
.+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++....
T Consensus 81 ~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 135 (140)
T 1k68_A 81 PTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp TTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred cccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHccc
Confidence 488999999999999999999999999999999999999999998876543
No 65
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.75 E-value=3.8e-18 Score=150.58 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=99.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
.+++||||||++..+..++.+|+.. |.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC-------CHHHHHHTSTTCTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCCC
Confidence 3579999999999999999999988 999999999999999988 78999999999999 99999999886 58
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|||++|+..+.+...+++++||++||.||++.++|..+|++++++..
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp CEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 99999999888888999999999999999999999999999887654
No 66
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.75 E-value=4.8e-17 Score=143.48 Aligned_cols=122 Identities=13% Similarity=0.220 Sum_probs=110.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCC--------CCeeEEEEecCCCCCCCHHHHHHH
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP--------ENFHVAIVEVTTSNTDGSFKFLET 85 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~--------~~pDLVIlDl~mp~~~dGlellr~ 85 (546)
++++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.|++ ++|+++++.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~ 83 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPG-TDGREVLQE 83 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSS-SCHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCC-CCHHHHHHH
Confidence 457899999999999999999999998 8999999999999997510 26999999999999 999999999
Q ss_pred hC------CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 86 AK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 86 Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
|+ .+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++....
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 142 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhhh
Confidence 97 478999999999999999999999999999999999999999998876543
No 67
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.75 E-value=3.5e-18 Score=165.63 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=124.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIv 93 (546)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|||+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~ii~ 81 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPG-MNGIDVCRVLRADSGVPIVM 81 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHTTCCCCEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCcEEE
Confidence 4699999999999999999999999999999999999999988 67999999999999 99999999997 699999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-------------------cccCCchhhHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-------------------ALSDSLKPVKESV 154 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~~-------------------~~~~~Lt~re~ev 154 (546)
+|+..+......++++||++||.||++.++|..+|+.++++....... .....||++|.++
T Consensus 82 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~v 161 (238)
T 2gwr_A 82 LTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDL 161 (238)
T ss_dssp EEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHH
Confidence 999999888999999999999999999999999999887653111000 0013489999999
Q ss_pred HHHHhhhhc
Q 009017 155 VSMLHLKLE 163 (546)
Q Consensus 155 l~ll~l~~~ 163 (546)
+.++.....
T Consensus 162 L~~l~~~~~ 170 (238)
T 2gwr_A 162 LVALARKPR 170 (238)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHCCC
Confidence 988876633
No 68
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.75 E-value=6.5e-18 Score=150.37 Aligned_cols=117 Identities=13% Similarity=0.234 Sum_probs=101.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA--MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~--~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
+++||||||++..+..+...|.. .||.++ .+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~ 78 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPR-MDGIELVDNILKLYPDC 78 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCC
Confidence 46999999999999999999973 588877 99999999999988 68999999999999 99999999986 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|||++|+..+.+...++++.||++||.||++.++|..+|++++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999888888899999999999999999999999998887654
No 69
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.75 E-value=6e-18 Score=149.08 Aligned_cols=120 Identities=10% Similarity=0.168 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
++++||||||++..+..++..|+..||+|..+.++.+|++.+.. ..||+||+|+.+++ ++|+++++.|+ .+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCC
Confidence 46799999999999999999999999999999999999999998 78999999999999 99999999885 48
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
|||++|+..+.+...+++++||++||.||++.++|..+|++++++....
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999988888889999999999999999999999999998876543
No 70
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.75 E-value=2.4e-17 Score=143.37 Aligned_cols=117 Identities=17% Similarity=0.282 Sum_probs=100.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------C
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~ 88 (546)
...++||||||++..+..++.+|++.||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 80 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPK-LDGLDVIRSLRQNKVANQ 80 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTT-BCHHHHHHHHHTTTCSSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCccCC
Confidence 345799999999999999999999999999999999999999998 78999999999999 99999999986 2
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.+||+++.. +.+...++++.||++||.||++.++|..+|+++....
T Consensus 81 ~~ii~~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 81 PKILVVSGL-DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CEEEEECCS-CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CeEEEEeCC-ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 445555544 4458889999999999999999999999998876543
No 71
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.74 E-value=1.4e-17 Score=159.05 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=104.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcC-----------CCCeeEEEEecCCCCCCCHHHH
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDK-----------PENFHVAIVEVTTSNTDGSFKF 82 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy-~V~~ass~~eALe~L~~~-----------~~~pDLVIlDl~mp~~~dGlel 82 (546)
+..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+ ++|+++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~el 137 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGYEA 137 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHHHH
Confidence 3467999999999999999999999998 899999999999999761 027999999999999 999999
Q ss_pred HHHhC--------CCcEEEEecCC-ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 83 LETAK--------DLPTIITSNIH-CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 83 lr~Lr--------~iPIIvLSs~~-d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
++.|+ .+|||++|+.. +.+...+++++||++||.||++ +|..+|++++++..
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 98885 48999999988 7788999999999999999999 89998888876543
No 72
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.74 E-value=4.9e-17 Score=142.74 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=103.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--------
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------- 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-------- 87 (546)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. .. |+||+|+.||+ ++|+++++.|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPG-VENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--TC-SEEEEECCSST-TTTTHHHHHHHHHHC-CCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCC-CcHHHHHHHHHHhhhhccC
Confidence 35799999999999999999999999999999999999999876 45 99999999999 99999999885
Q ss_pred CC-cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 DL-PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ~i-PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.. +||++|+..+.....++++.||++||.||++.++|..+|+++++
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 13 47889999999999999999999999999999999999887653
No 73
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.74 E-value=4.5e-17 Score=146.37 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 69999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
++|+..+.+....+++.||++||.||++.++|..+|++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.74 E-value=1e-17 Score=142.56 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=101.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
.+||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 78 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIIL 78 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEE
Confidence 589999999999999999999999999999999999999988 68999999999999 99999999986 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
+|+..+.. ..+++.||++||.||++.++|..+|++++
T Consensus 79 ~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 79 LTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 99876654 67889999999999999999999887653
No 75
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.73 E-value=3.7e-18 Score=172.81 Aligned_cols=114 Identities=12% Similarity=0.221 Sum_probs=105.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC---CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr---~iPI 91 (546)
..+||||||++..+..++.+|+..||.|. .+.++.+|++.+.. ..|||||+|+.|| + +||+++++.|| ++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~-mdG~e~~~~ir~~~~~pi 236 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADG-SSGIDAVKDILGRMDVPV 236 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTS-CCTTTTTHHHHHHTTCCE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCC-CCHHHHHHHHHhcCCCCE
Confidence 35899999999999999999999999999 99999999999998 7899999999999 8 99999999997 7999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+ ...+|+++||++||.||++.++|..+|+.++.+.
T Consensus 237 I~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 237 IFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 99999753 4677999999999999999999999999988653
No 76
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.73 E-value=2.5e-17 Score=156.95 Aligned_cols=140 Identities=16% Similarity=0.268 Sum_probs=121.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
|++||||||++..+..+..+|+..| .|..+.++.+|++.+ . .||+||+|+.||+ ++|+++++.|+ .+|||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-~---~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-E---AFHVVVLDVMLPD-YSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-S---CCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-C---CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999988 888999999999987 4 5899999999999 99999999986 69999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc----CC-----C-------cccCCchhhHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA----GG-----S-------ALSDSLKPVKESVVS 156 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~----~~-----~-------~~~~~Lt~re~evl~ 156 (546)
++|+..+.+...+++++||++||.||++.++|..+|+.++++.... .. . .....||++|.+++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 155 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILL 155 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHH
Confidence 9999999999999999999999999999999999999988763200 00 0 002348999999999
Q ss_pred HHhhhh
Q 009017 157 MLHLKL 162 (546)
Q Consensus 157 ll~l~~ 162 (546)
++....
T Consensus 156 ~l~~~~ 161 (220)
T 1p2f_A 156 FLAENA 161 (220)
T ss_dssp HHHHTT
T ss_pred HHHHCC
Confidence 887763
No 77
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.73 E-value=2.3e-18 Score=165.99 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=123.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
|++||||||++..+..+..+|+..| |.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 77 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPD-GNGIELCRDLLSRMPDLR 77 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETT-EEHHHHHHHHHHHCTTCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCc
Confidence 3689999999999999999999886 8855 79999999999988 67999999999999 99999999986 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC----------------CcccCCchhhHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----------------SALSDSLKPVKESV 154 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~----------------~~~~~~Lt~re~ev 154 (546)
||++|+..+.+...++++.||++||.||++.++|..+|+.++++...... ......||++|.++
T Consensus 78 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~v 157 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTL 157 (225)
T ss_dssp EEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988765321100 01234588999999
Q ss_pred HHHHhhhhcc
Q 009017 155 VSMLHLKLEN 164 (546)
Q Consensus 155 l~ll~l~~~l 164 (546)
+.++......
T Consensus 158 L~~l~~g~s~ 167 (225)
T 3c3w_A 158 LGLLSEGLTN 167 (225)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHCCCCH
Confidence 8887765433
No 78
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.73 E-value=2.8e-17 Score=162.33 Aligned_cols=118 Identities=17% Similarity=0.306 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~-~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPN-MDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCS-SCCHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcE
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999997 6999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|++|+..+.+...+++++|+++||.||++.++|..+|++++++..
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887654
No 79
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=4.1e-17 Score=146.20 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
...+||||||++..+..++.+|+..|+. |..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPG-MDGAQVAAAVRSYELPT 90 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHTTCSC
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 4579999999999999999999998854 4589999999999988 78999999999999 99999999987 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|||++|+..+.+...+++++||++||.||++.++|..+|++++++.
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999887653
No 80
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.73 E-value=2.4e-17 Score=155.75 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPI 91 (546)
+..+||||||++..+..+..+|+..||.|+ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ..||
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~-~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPR-RDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCE
Confidence 347999999999999999999999999988 99999999999988 67999999999999 99999999987 4699
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++.
T Consensus 89 i~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 81
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.73 E-value=3.3e-17 Score=146.96 Aligned_cols=114 Identities=14% Similarity=0.228 Sum_probs=107.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+++||||||++..+..++..|+. .||.++ .+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCe
Confidence 57999999999999999999998 799988 89999999999998 78999999999999 99999999987 689
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++|+..+.+...++++.||++||.||++.++|..+|+++++
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887764
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.73 E-value=2.1e-17 Score=141.63 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHhC------C
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK------D 88 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp-~~~dGlellr~Lr------~ 88 (546)
+.++||||||++..+..+...|+..||+|..+.++.+|++.+.. ..||+||+|+.++ + .+|+++++.++ .
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~-~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAG-QNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGG-CBHHHHHHHHHHSTTTTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCC-CCHHHHHHHHhcCccccC
Confidence 34699999999999999999999999999999999999999988 6799999999999 8 99999999885 5
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|||++ +..+.+...++++.|+++||.||++.++|..+|+++++
T Consensus 81 ~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 899999 88888889999999999999999999999999887653
No 83
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.73 E-value=9.3e-17 Score=141.47 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC---CCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK---PENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~---~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
..+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+ ++|+++++.|+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELIDLFKQH 85 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHHHHHHHh
Confidence 3468999999999999999999999999 888999999999998750 025999999999999 99999998775
Q ss_pred ------CCcEEEEecCCChHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 ------DLPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ------~iPIIvLSs~~d~e~i~~Al~aG-AdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|||++|+..+.....+++..| |++||.||++.++|..+|+++..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 58899999999999999999999 99999999999999999887764
No 84
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.72 E-value=1.7e-17 Score=147.45 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
...+||||||++..+..++.+|+..| |.|..+.++.+++..+......||+||+|+.|++ ++|+++++.|+ .+|
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALD-TAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHHHHHHHHHHHCTTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHHHHHHHHHHhCCCCc
Confidence 35799999999999999999999988 9999999999888877531025999999999999 99999999987 699
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
||++|+..+.+...+++++||++||.||++.++|..+|++++++
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988764
No 85
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=2e-17 Score=143.82 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=103.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
++++||||||++..+..++.+|+..++.|..+.++++++..+.. . ||+||+|+.|++ ++|+++++.|+ .+||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~i 77 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPD-MDGIEVIRHLAEHKSPASL 77 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTT-THHHHHHHHHHHTTCCCEE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCE
Confidence 45799999999999999999999888899999999999998887 6 999999999999 99999999987 6899
Q ss_pred EEEecCCCh-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 92 IITSNIHCL-----STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 92 IvLSs~~d~-----e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|++|+..+. +...++++.||++||.||++.++|..+|+++..
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 999998774 677789999999999999999999999887654
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=2.5e-17 Score=172.66 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=109.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvL 94 (546)
+||||||++.++..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|||++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~-~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPD-GDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETT-EETTTHHHHHHHHCTTCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEEEE
Confidence 79999999999999999999999999999999999999998 78999999999999 99999999987 6999999
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
|++.+.+.+.+|++.||+|||.||++.++|..+|++++....
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887653
No 87
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.71 E-value=1.8e-16 Score=139.94 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=104.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
.+||||||++..+..++..|+.. |.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|+|+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ii~ 77 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPG-RTGVDFLTEVRERWPETVRII 77 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCcEEE
Confidence 47999999999999999999875 999999999999999988 67999999999999 99999999986 689999
Q ss_pred EecCCChHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIAL-GAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~a-GAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+|+..+.....+++.. ||++||.||++.++|..+|++++++.
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 9999888888889876 59999999999999999999887654
No 88
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.71 E-value=1.9e-17 Score=173.03 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=106.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|||
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQ-IDGLELIRRIRQTASETPII 81 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSS-SCTHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHHhhCCCCcEE
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999997 69999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~-~~eeL~~~I~~vlrr~~ 136 (546)
++|+..+.+.+.++++.||+|||.||+ +.++|..+|++++++..
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 82 VLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp EC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999 68999999988887643
No 89
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.9e-16 Score=139.64 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=104.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC----CCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK----PENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~----~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
..++||||||++..+..++..|+..|| .|..+.++.+|++.+... ...||+||+|+.|++ ++|+++++.|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELRDD 84 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHHcC
Confidence 357899999999999999999999888 899999999999999741 036999999999999 99999999987
Q ss_pred ----CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
.+|||++|+..+.+...++++.||++||.||++.++|..++....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999876543
No 90
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.70 E-value=3.7e-16 Score=138.00 Aligned_cols=117 Identities=11% Similarity=0.240 Sum_probs=103.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+++||||||++..+..+...|+.. ||.++ .+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ ..+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPS-LDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSS-SCHHHHHHHHTTSTTCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHccCCCce
Confidence 479999999999999999999975 89854 89999999999998 67999999999999 99999999997 366
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~ 138 (546)
||++|+..+ ...++++.||++||.||++.++|..+|++++++....
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 888888743 5678999999999999999999999999988776543
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.68 E-value=9.6e-17 Score=143.79 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=95.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~i 89 (546)
.+++||||||++..+..++.+|+.. || .|..+.++.+|++.+... ..||+||+|+.|++ ++|+++++.|+ .+
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 79 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPD-AEAIDGLVRLKRFDPSN 79 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC-------CHHHHHHHHHHCTTS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCC-CchHHHHHHHHHhCCCC
Confidence 3579999999999999999999987 88 578999999999999762 36999999999999 99999999986 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+.+....+++.||++||.||++.++|..+|++++++
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999999889999999999999999999999999998887653
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=2.2e-16 Score=166.39 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=108.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ++|||+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~ell~~lr~~~~~~pvIv 77 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPD-VNGLEILKWIKERSPETEVIV 77 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEE
Confidence 479999999999999999999989999999999999999988 78999999999999 99999999986 689999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+|+..+.+.+.++++.||+|||.||++.++|..+|+++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887653
No 93
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.68 E-value=5.1e-16 Score=134.70 Aligned_cols=114 Identities=12% Similarity=0.262 Sum_probs=103.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCC-CCCCHHHHHHHhC----CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTS-NTDGSFKFLETAK----DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~-~pDLVIlDl~mp-~~~dGlellr~Lr----~i 89 (546)
.+++||||||++..+..++..|+..||.|..+.++.+|++.+.. . .||+||+|+.++ + ++|+++++.|+ .+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~-~~g~~~~~~l~~~~~~~ 80 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQP-PDGWQVARVAREIDPNM 80 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSS-SCHHHHHHHHHHHCTTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCC-CCHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999999999999999999988 6 799999999999 5 79999999986 69
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
|||++|+..+.+....+++.| +||.||++.++|..+|+++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 81 PIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp CEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 999999998888888877776 8999999999999999887754
No 94
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.68 E-value=2.7e-16 Score=166.81 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=108.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPI 91 (546)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~l~~~~~~~~~pi 78 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPG-MDGFTVCRKLKDDPTTRHIPV 78 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHhcCcccCCCCE
Confidence 589999999999999999999999999999999999999988 67999999999999 99999999886 4799
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
|++|+..+.+...+++++||++||.||++.++|..+|+.+++..
T Consensus 79 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 79 VLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643
No 95
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.68 E-value=1.2e-17 Score=160.41 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=115.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-CCCEEEE-ECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVST-FYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~-ass~~eALe-~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----- 87 (546)
.+++||||||++..+..++.+|+. .||.|+. +.++.+++. .+.. ..||+||+|+.||+ ++|+++++.|+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRIS-DDVLTDYSSFKHISCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCC-HHHHHHHHHHHHHHCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHHhhCC
Confidence 357999999999999999999994 6898864 456666665 4566 67999999999999 99999998875
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh--------------cCC----CcccCCchh
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN--------------AGG----SALSDSLKP 149 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~--------------~~~----~~~~~~Lt~ 149 (546)
++|||++|+..+......+++.||++||.||++.++|..+|++++++... ... ......||+
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 58999999999988899999999999999999999999999988753210 000 001234888
Q ss_pred hHHHHHHHHhhh
Q 009017 150 VKESVVSMLHLK 161 (546)
Q Consensus 150 re~evl~ll~l~ 161 (546)
+|.+++.++...
T Consensus 163 rE~~vL~~l~~g 174 (225)
T 3klo_A 163 REQQIIKLLGSG 174 (225)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC
Confidence 898888887654
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.68 E-value=7e-16 Score=135.49 Aligned_cols=113 Identities=16% Similarity=0.283 Sum_probs=104.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
..+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+|| |++ ++|+++++.|+ .+|
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----~~~-~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--SCCSEEE----ECS-TTHHHHHHHHHHHSTTSE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc--CCCCEEE----EcC-ccHHHHHHHHHhcCCCcc
Confidence 446899999999999999999999999999999999999999998 7899999 888 99999999885 789
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHK 134 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~-~~eeL~~~I~~vlrr 134 (546)
||++|+..+.+...++++.||++||.||+ +.++|..+|++++++
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999887654
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.67 E-value=4.6e-16 Score=142.32 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC-CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMD-YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~G-y~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iP 90 (546)
.+++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .++
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPN-LNGIEALKLIMKKAPTR 100 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHSCCE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCce
Confidence 35799999999999999999999874 444 489999999999988 68999999999999 99999999987 589
Q ss_pred EEEEecCCChH--HHHHHHHcCCCEEEeCCCC---------HHHHHHHHHHHH
Q 009017 91 TIITSNIHCLS--TMMKCIALGAVEFLRKPLS---------EDKLRNLWQHVV 132 (546)
Q Consensus 91 IIvLSs~~d~e--~i~~Al~aGAdDYL~KP~~---------~eeL~~~I~~vl 132 (546)
||++|+..+.. .+.+++++||++||.||++ .++|+.+|+.++
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 99999876643 6779999999999999999 556665555443
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.67 E-value=1.9e-16 Score=140.65 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=94.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHhC---C
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK---D 88 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~-~pDLVIlDl~mp~~~dGlellr~Lr---~ 88 (546)
....+||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.. . .||+||+|+.|++ ++|+++++.|+ .
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~-~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPV-MDGMEFLRHAKLKTR 87 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCC-CTTCHHHHHHHHHCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCC
Confidence 34579999999999999999999988 89865 89999999999988 6 7999999999999 99999999987 6
Q ss_pred CcEEEEec--CCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 89 LPTIITSN--IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 89 iPIIvLSs--~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
.++|++++ ..+.+.+.++++.||++||.||++.++|..+++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 88999887 556677889999999999999999776665543
No 99
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.66 E-value=3.2e-16 Score=138.45 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=98.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---------
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--------- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--------- 87 (546)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPV-MDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCS-SCHHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhhhhhcCCC
Confidence 3699999999999999999999999999999999999999988 68999999999999 99999998885
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
.++||++|+........ ++||++||.||++.++|..+|+.++++.
T Consensus 87 ~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 87 RASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred ceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 47899998865543322 7899999999999999999998877543
No 100
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.66 E-value=2.2e-16 Score=150.77 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=118.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIv 93 (546)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+|| ||+ ++|+++++.|+ ++|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----lp~-~~g~~~~~~lr~~~~~~~ii~ 73 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSIVVLV 73 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----ECC-TTHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----eCC-CCHHHHHHHHHhCCCCCcEEE
Confidence 479999999999999999999999999999999999999988 7899999 899 99999999885 789999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH--Hh--cCC-------C-----cccCCchhhHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKA--FN--AGG-------S-----ALSDSLKPVKESVVS 156 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~-~~eeL~~~I~~vlrr~--~~--~~~-------~-----~~~~~Lt~re~evl~ 156 (546)
+|+..+.+...+++++||++||.||+ +.++|..+|+.++++. .. ... . .....||++|.+++.
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~ 153 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLT 153 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHH
Confidence 99999999999999999999999999 9999999999887653 10 000 0 001247899999998
Q ss_pred HHhhhh
Q 009017 157 MLHLKL 162 (546)
Q Consensus 157 ll~l~~ 162 (546)
++....
T Consensus 154 ~l~~~~ 159 (223)
T 2hqr_A 154 HLARHR 159 (223)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 887663
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.65 E-value=6.8e-18 Score=144.45 Aligned_cols=115 Identities=25% Similarity=0.332 Sum_probs=106.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..+||||||++..+..++..|+..||.|..+.++.++++.+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSH-HHHCSTHHHHHHHCTTSCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4689999999999999999999999999999999999999988 68999999999999 89998888886 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++|+..+.+...++++.||++||.||++.++|..+|++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 999988888888999999999999999999999999887754
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.65 E-value=6.7e-16 Score=157.90 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=105.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~i 89 (546)
..+||||||++..+..++.+|.. .||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~G~~~~~~l~~~~~~~~~ 94 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPG-VDGLTLLAAYRGNPATRDI 94 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHTTSTTTTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHhcCcccCCC
Confidence 46799999999999999999974 58999999999999999988 68999999999999 99999999997 48
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||++|+..+.+...+++++||+|||.||++.++|..+|+.+++
T Consensus 95 ~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 95 PIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987754
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.64 E-value=5.4e-16 Score=130.39 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=100.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCcE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iPI 91 (546)
.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.+++ .+|+++++.++ .+||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 589999999999999999999999999999999999999988 68999999999999 99999999885 5899
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
|++|+..+.. .+++.|+++||.||++.++|..+|++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999987765 8999999999999999999998887543
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.63 E-value=4.9e-16 Score=163.44 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=103.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
++++||||||++..+..++.+|+. .||.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.++ ..+
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~-~dG~ell~~l~~~~~~~~ 79 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSG-MDGLAFLRHASLSGKVHS 79 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSS-SCHHHHHHHHHHHTCEEE
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCce
Confidence 357999999999999999999998 688999999999999999761 26999999999999 99999999987 356
Q ss_pred EEEEecCCCh-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCL-----STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 91 IIvLSs~~d~-----e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
||++|+..+. ..+.+++++||++||.||++.++|..+|++++++.
T Consensus 80 ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 80 VILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp EEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 7777776665 66788999999999999999999999999887654
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.60 E-value=1.1e-15 Score=143.21 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
.++||||||++..+..+...|+..||.|..+.++.+++ . ..||+||+|+.||+ ++|+ +++.++ .+|||
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~-~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNR-HHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSST-HHHH-HHHHHHHSCTTCEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCc-cchH-HHHHHhccCCCCCEE
Confidence 57999999999999999999999999999888877765 3 47999999999999 9998 777764 68999
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~ 136 (546)
++|+..+.+.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876543
No 106
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.60 E-value=1.7e-15 Score=133.12 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=97.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+...+||||||++..+..++..|+..||.|..+.++.+|++.+... ..||+||+|+.|++ ++|+++++.|+ .+|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~-~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVD-LSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTT-SCHHHHHHHHTTSSSCCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCC
Confidence 4468999999999999999999999999999999999999988751 25999999999999 99999999997 689
Q ss_pred EEEEe-cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITS-NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLS-s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||++| +..+... .+++ +++||.||++.++|..+|+++++
T Consensus 91 ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 91 VLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 99999 8766655 5565 99999999999999998887654
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.57 E-value=4.9e-15 Score=146.99 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=87.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIv 93 (546)
+.+||||||++.++..+...|+.. ||.|..+ ++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~-~~G~~~~~~lr~~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPD-APSGEAVKVLLERGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTT-BTTSHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCC-CCHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999764 7877655 45556666666 67999999999999 99999999997 799999
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSE 121 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~ 121 (546)
+|+..+.+...+++++||+|||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999643
No 108
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.57 E-value=1.8e-14 Score=150.09 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=100.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCc
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iP 90 (546)
.+++||||||++..+..++.+|+.. ||+ |..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ .+|
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~-~dGlell~~l~~~~p~p 78 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPR-MDGLDFLEKLMRLRPMP 78 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSS-SCHHHHHHHHHHSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHhcCCCc
Confidence 3579999999999999999999986 899 4599999999999988 67999999999999 99999999986 589
Q ss_pred EEEEecCCCh--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHH
Q 009017 91 TIITSNIHCL--STMMKCIALGAVEFLRKPLSE---------DKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~d~--e~i~~Al~aGAdDYL~KP~~~---------eeL~~~I~~vlr 133 (546)
||++|+..+. +...++++.||+|||.||++. ++|..+|+.+.+
T Consensus 79 VIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 79 VVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp EEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 9999998765 458899999999999999983 666666665543
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.47 E-value=3.8e-14 Score=161.41 Aligned_cols=117 Identities=9% Similarity=0.112 Sum_probs=106.0
Q ss_pred CEEEEEeCCH-HH-------HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCCC---CCCHHHHHHH
Q 009017 18 LRVLLLDQDS-SA-------AAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSN---TDGSFKFLET 85 (546)
Q Consensus 18 ~rILIVDDD~-~~-------~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~-~pDLVIlDl~mp~---~~dGlellr~ 85 (546)
|+|||||||. .+ ++.|+..|++.||+|..+.++++|+..+.. . .+|+||+|+.||+ .++|++++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHH
Confidence 3899999999 88 999999999999999999999999999988 5 4999999999985 1589999999
Q ss_pred hC----CCcEEEEecCCC-hHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHHHH
Q 009017 86 AK----DLPTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDK-LRNLWQHVVHKAF 136 (546)
Q Consensus 86 Lr----~iPIIvLSs~~d-~e~i~~Al~aGAdDYL~KP~~~ee-L~~~I~~vlrr~~ 136 (546)
|| ++|||++|+..+ .+....++..||+|||.||++..+ |..+|++++++..
T Consensus 79 iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 97 699999999877 777888999999999999999999 8899999888753
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.96 E-value=1.1e-08 Score=108.32 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=98.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC------CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr------~iP 90 (546)
..+|++|||+...+..+...|.. .+.+....+..+++. ... ..+|+|++|+.||+ ++|+++++.++ .+|
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~-~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKN-FDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSS-SCHHHHHHHHHTSGGGTTCC
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCC-CcHHHHHHHHHhCccccCCc
Confidence 35899999999988888888865 467778888888863 344 57999999999999 99999999886 589
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
||++|+..+......+++.|++||+.||++..++..++..++++.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888777654
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.77 E-value=2.5e-09 Score=101.84 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=73.7
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 42 y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+ ..++++++.....+...++++.||++||.|
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTT-SSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 445568899999999988 67999999999999 99999999976 456777777777889999999999999999
Q ss_pred C--CCHHHHHHHHHHHH
Q 009017 118 P--LSEDKLRNLWQHVV 132 (546)
Q Consensus 118 P--~~~eeL~~~I~~vl 132 (546)
| ++..+|+..+.+.+
T Consensus 83 p~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTF 99 (237)
T ss_dssp HHHHHCTHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHh
Confidence 9 67677776665443
No 112
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.96 E-value=0.0076 Score=51.96 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=80.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLS 95 (546)
...||+|..|-.+.-.+++++....|++++..... .+ ..-|+|+|.+.+-. .+- +-.++- ..-+|++-
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~------~e--~~AdlIfCEYlLLP-e~i--fS~k~~~~~dliVLf 80 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK------QE--LSADLVVCEYSLLP-REI--RSPKSLEGSFVLVLL 80 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC------CC--TTEEEEEEEGGGSC-TTC--CCCTTCCSCEEEEEE
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccC------Cc--ccceeEEEeeecCh-HHh--cCCCCCCcccEEEEe
Confidence 35689999999999999999988889998765422 12 46799999987633 110 000111 45577777
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
..-+.+.+.+.++.||. ||.+|++..-|.++|++.++.
T Consensus 81 D~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 81 DFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp SSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 77889999999999999 999999999998888887763
No 113
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.75 E-value=0.0028 Score=61.81 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
.+.+||||||+...+..|...|+..|++|..+.+ ... ..+|+||+|..++. ..+. ..+|.++
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~~--~~~~~ii~d~~~~~-~~~~--------~~~i~~~ 71 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QEP--TPEDVLITDEVVSK-KWQG--------RAVVTFC 71 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CCC--CTTCEEEEESSCSC-CCCS--------SEEEEEC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CCC--CcCcEEEEcCCCcc-cccc--------ceEEEEe
Confidence 3579999999999999999999999999988775 123 56899999999987 4431 1255566
Q ss_pred cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009017 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vl 132 (546)
...... ....+...++.+|+...+|...+.+++
T Consensus 72 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 72 RRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp SSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred cccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 543210 112345689999999887777665543
No 114
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.72 E-value=0.00098 Score=75.54 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHH
Q 009017 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~ 104 (546)
....|...|++.||+|+.+.+.++|+..++++ ..+++||+|++++ +.+++++|+ ++||++++...+...+.
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~----~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY----NLELCEEISKMNENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH----HHHHHHHHHHHCTTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc----HHHHHHHHHHhCCCCCEEEEecCCcccccc
Confidence 34557788899999999999999999999884 4699999999764 467888776 79999999875433322
Q ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHH
Q 009017 105 KCIALGAVEFLRKPLS-EDKLRNLWQHVVHKA 135 (546)
Q Consensus 105 ~Al~aGAdDYL~KP~~-~eeL~~~I~~vlrr~ 135 (546)
...-.++++|+.+..+ .+.+...|.+.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1123578999998765 444455565555443
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.72 E-value=0.23 Score=45.68 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=82.0
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr- 87 (546)
..+||+. |-+..-...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+...+...+. -.++++.|+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 77888888999999999999983 4578889999988 78999999887654111 123444443
Q ss_pred ----CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 009017 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 88 ----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~ 135 (546)
+++|+ +.+..-.+....+.+.|++.++..--+..+....++..+...
T Consensus 96 ~g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 96 LGADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp TTCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 35544 555555555556678999987766566677777777666544
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.95 E-value=1.1 Score=39.93 Aligned_cols=111 Identities=6% Similarity=-0.036 Sum_probs=74.3
Q ss_pred CEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC--
Q 009017 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK-- 87 (546)
Q Consensus 18 ~rILIV----DDD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr-- 87 (546)
.+|++. |-+..-...+..+|+..||+|+ ...+.++.++.+.+ ..+|+|.+...+...+. .-++++.|+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhc
Confidence 456654 4555666778899999999988 56789999999988 78999999987754111 112334443
Q ss_pred ---CCcEEEEecCC-----ChH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 88 ---DLPTIITSNIH-----CLS-TMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 88 ---~iPIIvLSs~~-----d~e-~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
+++| ++.+.. +.. ....+.+.|++.|+.---+..++...+...
T Consensus 82 g~~~i~v-~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 82 GLEGILL-YVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp TCTTCEE-EEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCEE-EEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 4555 444432 222 244578999999987777777777665543
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=93.91 E-value=0.23 Score=46.34 Aligned_cols=78 Identities=9% Similarity=0.178 Sum_probs=58.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEEec-CCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEE------e
Q 009017 49 NENEALSAFSDKPENFHVAIVEV-TTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL------R 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl-~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL------~ 116 (546)
+..+.++.+... ...++++.++ .++. ++| .+++++++ ++|||++++..+.+...++++.||++++ .
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~-~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGT-KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTC-CSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCc-cccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 455666655541 2456888887 4444 566 45666665 7999999999999999999999999995 6
Q ss_pred CCCCHHHHHHHH
Q 009017 117 KPLSEDKLRNLW 128 (546)
Q Consensus 117 KP~~~eeL~~~I 128 (546)
+|++..++...+
T Consensus 209 ~~~~~~~~~~~l 220 (237)
T 3cwo_X 209 REIDVRELKEYL 220 (237)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 788888887643
No 118
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.35 E-value=0.54 Score=48.45 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=78.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh---CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA---MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~---~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
+.+++.|+|.|....+.|.++|.+ ..|+|..|++.+.+.+.+++ ..+|++|+|-.+.. . ..+..+...++
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~-~----~~~~~~~~~v~ 92 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNI-D----KSEFKRNCGLA 92 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCC-C----GGGGCSSCEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhh-h----hhhhcccCcEE
Confidence 358999999999999999999975 36889999999999999988 78999999987765 2 11222356677
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+++.....+ ...-...+.|--+.++++..|.....
T Consensus 93 ~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 93 YFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYS 127 (373)
T ss_dssp EEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHh
Confidence 776643221 01123478898899999877766653
No 119
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.12 E-value=1.5 Score=42.58 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC------CCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 27 SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT------TSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 27 ~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~------mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+.....+.+.+++.|..+. .+.+.+++...... .+|+|.+.+. ... ..+++++++++ ++|||.-.+-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~li~~l~~~~ipvIA~GGI 190 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPV-EPDLAMVTQLSHAGCRVIAEGRY 190 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCS-SCCHHHHHHHHTTTCCEEEESSC
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCC-CCCHHHHHHHHHcCCCEEEECCC
Confidence 3344455555666787755 77888888877665 5898865332 122 34578888876 6999998888
Q ss_pred CChHHHHHHHHcCCCEEEeC
Q 009017 98 HCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~K 117 (546)
.+.+.+.+++++||++++.=
T Consensus 191 ~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 191 NTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 89999999999999999874
No 120
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=89.60 E-value=2.1 Score=48.64 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr- 87 (546)
..+|+|. |.+..-...+..+|+..||+|+. ..+.++.++.+.+ ..+|+|.+...+...+. .-++++.|+
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4577776 55556667788899999999984 3467899999888 78999999877654111 233455554
Q ss_pred -CC--cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 009017 88 -DL--PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (546)
Q Consensus 88 -~i--PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~ 137 (546)
.+ ..|++-+..-......+.+.|+++|+..-.+..++...+...+.....
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~~~ 734 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLE 734 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHHhh
Confidence 11 234444422222344567899999999777888888888777765543
No 121
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.19 E-value=2.4 Score=42.29 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=65.6
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC-C---CCHHHHHHHhC---CCcEEEEecCCChH
Q 009017 31 AELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN-T---DGSFKFLETAK---DLPTIITSNIHCLS 101 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~-~---~dGlellr~Lr---~iPIIvLSs~~d~e 101 (546)
-...+.|.+.||.|. +..+...|..+..- .+++| +.+..+- . ...+++++.|+ ++|||+=.+-.+.+
T Consensus 125 v~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPs 200 (265)
T 1wv2_A 125 LKAAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTAS 200 (265)
T ss_dssp HHHHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHH
Confidence 345566677899987 55566655554443 56776 4444331 0 12367787776 79999877888999
Q ss_pred HHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 009017 102 TMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vlr 133 (546)
.+..++++||+++++- --++..+...+...++
T Consensus 201 DAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 201 DAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999864 3345555555554443
No 122
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=88.14 E-value=2.5 Score=41.05 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C-----CCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 27 SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T-----SNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 27 ~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~-m-----p~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+.....+.+.+++.|..+. .+.+.+++...... .+|+|.+.+. . .. ..+++++++++ ++|||.-.+-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~~i~~l~~~~ipvIA~GGI 190 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPE-EPDLPLVKALHDAGCRVIAEGRY 190 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCS-SCCHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCC-CCCHHHHHHHHhcCCcEEEECCC
Confidence 3344455555666787755 77888888777665 5898865322 1 12 34578888776 7999998888
Q ss_pred CChHHHHHHHHcCCCEEEeC
Q 009017 98 HCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~K 117 (546)
.+.+.+.+++++||++++.=
T Consensus 191 ~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 191 NSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 88999999999999999874
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=86.70 E-value=5.5 Score=39.02 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=65.6
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~---~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr- 87 (546)
..+||+. |-+..-...+..+|+..||+|+ .--..++.++.+.. ..+|+|.+...+...+.. -++++.|+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4578877 6667777889999999999986 34567788888887 689999999877652333 34666665
Q ss_pred ---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+++|++--...+.+. +-+.||+.|..
T Consensus 201 ~~~~~~v~vGG~~~~~~~---~~~igad~~~~ 229 (258)
T 2i2x_B 201 NGIKIPFACGGGAVNQDF---VSQFALGVYGE 229 (258)
T ss_dssp TTCCCCEEEESTTCCHHH---HHTSTTEEECS
T ss_pred cCCCCcEEEECccCCHHH---HHHcCCeEEEC
Confidence 466665443334332 23778866654
No 124
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.39 E-value=1.2 Score=35.47 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCCcCccchhhhhhHHHHHHHhcCCCCChH---HHHHHhCCCCccHHHHHHHHHHHHhhh
Q 009017 303 SGLQNSCGNKANRKKMKAVEQLGVDQAIPS---RILELMKVEGLTRHNVASHLQKYRMHR 359 (546)
Q Consensus 303 ~~~~~~~~~~lh~~f~~av~~lg~~~a~p~---~i~~~m~v~~l~~~~v~shlqkyr~~~ 359 (546)
...+-.||.|=+++|+++|+++|.+...++ .|-+.| +|=|..+|+.|.|+|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 344558999999999999999996543333 444554 6899999999999997553
No 125
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=86.11 E-value=3.2 Score=47.02 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=78.6
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr- 87 (546)
..+|+|. |.+..-...+..+|+..||+|+. ..+.++.++.+.+ ..+|+|.+...+...+. .-++++.|+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577776 55666667788889999999984 3467899999888 78999999887654111 234555554
Q ss_pred -CC--cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 88 -DL--PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 88 -~i--PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.+ ..|++-+..-.+....+.+.|++.|+.--.+..++...+...++.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 11 344455422233345568899999998777888887777666644
No 126
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=85.60 E-value=4.2 Score=40.61 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPI 91 (546)
..+.|-++-.++.+...+...|....|.++.+.+.++.++.++...+.+|++|+...- ..-..++..|. -+|+
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~~---~~~~~~~~~L~~~g~lLP~ 84 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAAN---PSFRAVVQQLCFEGVVVPA 84 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTS---TTHHHHHHHHHHTTCCCCE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeCC---CccHHHHHHHHHcCccccE
Confidence 3578888999999999999999888899999999999999997755789999987621 23456666664 5899
Q ss_pred EEEecCCChHHHHH---HHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC
Q 009017 92 IITSNIHCLSTMMK---CIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG 140 (546)
Q Consensus 92 IvLSs~~d~e~i~~---Al~aGAdDYL~KP~~~eeL~~~I~~vlrr~~~~~~ 140 (546)
|++..... ..-.+ -+-.-..+.-...-..++|-..|.+++.+......
T Consensus 85 vil~~~~~-~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~Fl~l~~ 135 (289)
T 1r8j_A 85 IVVGDRDS-EDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFLRLAP 135 (289)
T ss_dssp EEESCCC-------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHHHHHCS
T ss_pred EEeccCcc-ccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHHHccCC
Confidence 98865422 00000 01111122223334567788888888887765543
No 127
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=85.30 E-value=2.1 Score=34.95 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=40.8
Q ss_pred cCCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHH
Q 009017 301 KASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 355 (546)
Q Consensus 301 ~~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqky 355 (546)
+.+..+..||.+=+++|++||++.| + -=+.|-+.|+ |=|..+++.|.++|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~--~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-D--DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-S--CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-C--CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 4445567999999999999999999 3 2467777764 89999999998877
No 128
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=81.82 E-value=11 Score=37.32 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC-----CC
Q 009017 19 RVLLLDQ--DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK-----DL 89 (546)
Q Consensus 19 rILIVDD--D~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr-----~i 89 (546)
-|+|+.. +......+.....+.|..+. .+.+.+|+...+.. ..|+|-+.-.-... .-+++.+++|. ++
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~ 214 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSV 214 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTS
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHhCcccC
Confidence 3555432 23334445556667788854 78899887766654 47888776321110 01234444443 57
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
|+|..++-.+.+.+.++.++||+++++=
T Consensus 215 pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 215 IRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 8888888888999999999999999874
No 129
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=81.63 E-value=3 Score=39.29 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr- 87 (546)
..+||+. |-+..-...+..+|+..||+|... ...++.++.+.+ ..+|+|.+-..+...... -++++.++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478887 677777888999999999999853 356788888877 689999998876541222 23455554
Q ss_pred -----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 -----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 -----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+++|++--...+.+. +-+.||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 266555433344333 34579887654
No 130
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=81.47 E-value=14 Score=32.84 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=72.4
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcE
Q 009017 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~-~~~~~L~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPI 91 (546)
..+++|+.+.. .....+...++..+ .|.. .-+.++..+++.. .|++|+-... + .-|+.+++.+. .+||
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e-~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 142 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-C-CccHHHHHHHHCCCCE
Confidence 36777887644 25567777787776 4444 3355577777765 5888875443 3 34778888876 7887
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|+. . .....+.+ .|..+++..+-+.++|..+|..++.
T Consensus 143 I~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 143 IAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 654 2 22344455 7888999999999999999988775
No 131
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.16 E-value=5.3 Score=32.11 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=42.8
Q ss_pred cCCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHh-CCCCccHHHHHHHHHHHH
Q 009017 301 KASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYR 356 (546)
Q Consensus 301 ~~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m-~v~~l~~~~v~shlqkyr 356 (546)
+++..+..||.+=.++|++||.++|.+ +|.+--.+- -|+|=|-.+|+.|.+.+.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334455689999999999999999965 777665554 358999999999988765
No 132
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.26 E-value=6.4 Score=31.04 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=40.9
Q ss_pred CCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 009017 304 GLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 359 (546)
Q Consensus 304 ~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~ 359 (546)
..+-.||.|=++.|+++|+++|.+ =..|-.. |+|=|..+|+.|.++|-...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRR---WTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSC---HHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345589999999999999999973 3455555 47999999999999986544
No 133
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=77.82 E-value=5.8 Score=33.68 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=61.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcC--CCCeeEEEEecCCCC-CCCHHHHHHHhCCCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDK--PENFHVAIVEVTTSN-TDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~--~~~pDLVIlDl~mp~-~~dGlellr~Lr~iPIIvL 94 (546)
+-|++..-|......++.++...||.|.++.+..+.-+.+.+- ....-+|++-++--. ....+.|++.+..-.+|++
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566677888888899999999999999999998876655430 022233333221100 0112334444443333333
Q ss_pred ecCCChHH----HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 95 SNIHCLST----MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 95 Ss~~d~e~----i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
-.. |... ..+..+.|..--- -.+++++...+.++++.
T Consensus 83 ydq-dqnrleefsrevrrrgfevrt--vtspddfkkslerlire 123 (134)
T 2l69_A 83 YDQ-DQNRLEEFSREVRRRGFEVRT--VTSPDDFKKSLERLIRE 123 (134)
T ss_dssp ECS-CHHHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHHHHH
T ss_pred EeC-chhHHHHHHHHHHhcCceEEE--ecChHHHHHHHHHHHHH
Confidence 332 2222 2233344533211 23567777777776654
No 134
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=77.38 E-value=20 Score=35.62 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=73.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHH--------HhhC-CCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-H
Q 009017 17 GLRVLLL----DQDSSAAAELKFK--------LEAM-DYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-S 79 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~--------Le~~-Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-G 79 (546)
..+|++. |-+..=...+..+ |+.. ||+|+. .-..++.++.+.+ ..+|+|.+...+.. .+ .
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~-~~~~ 196 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQ-KNVH 196 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCT-TSHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCC-ccch
Confidence 3566654 5566666667777 9999 999873 4478888999988 78999999988764 22 2
Q ss_pred H----HHHHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 80 F----KFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 80 l----ellr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+ ++++.++ +++| ++.+..-.. ..+.+.||+.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~v-ivGG~~~~~--~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVL-LCGGPRINN--EIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEE-EEECTTCCH--HHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEE-EEECCcCCH--HHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 2 2344443 2454 444433222 236688999998877777777776655443
No 135
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=77.01 E-value=3.7 Score=39.32 Aligned_cols=95 Identities=5% Similarity=-0.008 Sum_probs=63.6
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEE--ecCCCCCCCH-HHHHHHh
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIV--EVTTSNTDGS-FKFLETA 86 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIl--Dl~mp~~~dG-lellr~L 86 (546)
..+|++. |-+..=...+..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ ...+...+.. -++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4578777 667777788899999999998743 467888899988 78999999 8766431222 2344555
Q ss_pred C------CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 87 K------DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 87 r------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+ +++|++=-.....+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 3 355554433344332 34569988754
No 136
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=76.29 E-value=17 Score=36.16 Aligned_cols=86 Identities=19% Similarity=0.046 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CC---HHHHHHHhC-CCcEEEEecCCChH
Q 009017 29 AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG---SFKFLETAK-DLPTIITSNIHCLS 101 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~--~d---Glellr~Lr-~iPIIvLSs~~d~e 101 (546)
....+.....+.|..+. .+++.+|+...+.. .+|+|=+...-... .| -.++++.+. ++++|.-++-.+.+
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 34445555566798855 88999998777654 57877665322110 12 123444454 68888889988999
Q ss_pred HHHHHHHcCCCEEEeC
Q 009017 102 TMMKCIALGAVEFLRK 117 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~K 117 (546)
.+.++.++||+.+|+-
T Consensus 234 dv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHTTTCCEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999873
No 137
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=76.04 E-value=0.91 Score=45.11 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=35.8
Q ss_pred CCEEEEEeCC--HHHHHHHHHHHhhCCCEEEEECCHHH--HHHHhhcCCCCeeEEEEe
Q 009017 17 GLRVLLLDQD--SSAAAELKFKLEAMDYIVSTFYNENE--ALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 17 ~~rILIVDDD--~~~~~~L~~~Le~~Gy~V~~ass~~e--ALe~L~~~~~~pDLVIlD 70 (546)
|.+||||+++ +.....|.+.|+..||.|......+- -.+.|. .||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 4689999988 66778899999999999887664321 123344 48999887
No 138
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=75.87 E-value=7.6 Score=39.54 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE----------EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI----------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~----------V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
..+++||-+.+...+.+.+.+++.|.. |.......+...++.. -|++++--..-+ ..|..+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e-~gg~~~lEAm 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVN-IGGHNLLEPT 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSS-SCCCCCHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccC-CCCcCHHHHH
Confidence 367888887776555677777776643 2332323455555554 688777433322 2345677777
Q ss_pred C-CCcEEEEecCCChHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 87 K-DLPTIITSNIHCLSTMMKC-IALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 87 r-~iPIIvLSs~~d~e~i~~A-l~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. .+|||.-+...+...+.+. .+.| ++..+-+.++|.++|..++.
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 6 8999853333343343333 3455 45666789999999888775
No 139
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=75.74 E-value=10 Score=30.78 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
+++|+|+.- ..+...+...|...| ++|..+....+.++.+.. ....++.+|+. +.-++.+.+...-+|+.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~-----~~~~~~~~~~~~d~vi~~ 76 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAK-----DEAGLAKALGGFDAVISA 76 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTT-----CHHHHHHHTTTCSEEEEC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCC-----CHHHHHHHHcCCCEEEEC
Confidence 468999998 778888888888888 888866655555555554 45666766653 223444555666666665
Q ss_pred cCC--ChHHHHHHHHcCCCEE
Q 009017 96 NIH--CLSTMMKCIALGAVEF 114 (546)
Q Consensus 96 s~~--d~e~i~~Al~aGAdDY 114 (546)
... .......+.+.|+.-|
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 77 APFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCchhhHHHHHHHHHhCCCEE
Confidence 432 2344556667776544
No 140
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=75.37 E-value=10 Score=37.63 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=68.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
..+++|+.+... ..+...+++..-.|. -.-+..+..+++.. .|++|+-..-.+ .-|+.+++.+. .+|||+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e-~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGE-SFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCC-SSCHHHHHHHHHTCEEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCC-CCchHHHHHHHcCCCEEE
Confidence 356777766655 555555544211222 23344555666665 477776532133 34677888876 888875
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. . .....+.+..|..+|+..+-+.++|.++|..++.
T Consensus 313 ~-~---~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 313 S-D---LDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp C-C---CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred e-c---CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 3 2 2455667788889999999999999999988875
No 141
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=75.21 E-value=10 Score=37.92 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-----HHHHHHhC----C-CcEEEEecCCCh
Q 009017 33 LKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLETAK----D-LPTIITSNIHCL 100 (546)
Q Consensus 33 L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-----lellr~Lr----~-iPIIvLSs~~d~ 100 (546)
-.+.|.+.||.|. +..|...| +.+.. ..+++| +.+..+- ..| .++++.++ + +|||+=.+-.+.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~a-k~l~~--~G~~aV-mPlg~pI-GsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLA-KRLAA--LGTATV-MPLAAPI-GSGWGVRTRALLELFAREKASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHH-HHHHH--HTCSCB-EEBSSST-TTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEeeccCCCHHHH-HHHHh--cCCCEE-EecCccC-cCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCH
Confidence 3445556799977 44566444 44444 346666 5554432 222 34454443 5 999988888899
Q ss_pred HHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 009017 101 STMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vlr 133 (546)
+.+..++++||++.++- --++..+...+...+.
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999764 3445555555555443
No 142
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=74.92 E-value=20 Score=33.01 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCC------CCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHc
Q 009017 40 MDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL 109 (546)
Q Consensus 40 ~Gy~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~------~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~a 109 (546)
.+..+ ..+.+..++...... .+|.|+++-..+. ...+++.++.++ ++||++..+-. .+.+.++++.
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~ 182 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKT 182 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTT
T ss_pred CCCEEEEecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHc
Confidence 34443 356788887665544 5899998753332 024677887775 78988776655 7778888999
Q ss_pred CCCEEEeC
Q 009017 110 GAVEFLRK 117 (546)
Q Consensus 110 GAdDYL~K 117 (546)
|++.+..=
T Consensus 183 Ga~gv~vg 190 (215)
T 1xi3_A 183 GVDGIAVI 190 (215)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEh
Confidence 99998653
No 143
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=74.55 E-value=13 Score=34.89 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=51.9
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcC
Q 009017 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALG 110 (546)
Q Consensus 41 Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aG 110 (546)
|..+. .+.+.+++...... ..|.|+++-..+.. ..++++++.++ ++||++..+- +.+.+.+++++|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 55433 67788888776654 58999997643320 13577777775 7899888776 788899999999
Q ss_pred CCEEEeC
Q 009017 111 AVEFLRK 117 (546)
Q Consensus 111 AdDYL~K 117 (546)
|+.+..=
T Consensus 186 a~gv~vg 192 (221)
T 1yad_A 186 ADGIAVM 192 (221)
T ss_dssp CSEEEES
T ss_pred CCEEEEh
Confidence 9988753
No 144
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=74.05 E-value=5.1 Score=40.87 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred CcCCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHh-hcCCCCeeEEEEecCCCCCCCHHHHHHHhCC
Q 009017 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAKD 88 (546)
Q Consensus 11 ~~~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L-~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~ 88 (546)
++.||+++||.||.--..-...+...|...+++++ .++...+..+.+ .. .. ..-+. .+--++++. .+
T Consensus 20 ~~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~~-~~~~~-------~~~~~ll~~-~~ 88 (361)
T 3u3x_A 20 FQSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV--YA-DARRI-------ATAEEILED-EN 88 (361)
T ss_dssp ------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH--SS-SCCEE-------SCHHHHHTC-TT
T ss_pred hhhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH--cC-CCccc-------CCHHHHhcC-CC
Confidence 45677789999998764443445555566788876 454333333333 33 11 01011 122233321 14
Q ss_pred CcEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 89 LPTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 89 iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+-+|+++... -.+.+..|+++|..=|+-||+ +.++..+.++
T Consensus 89 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 133 (361)
T 3u3x_A 89 IGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRR 133 (361)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 5566665433 356788999999999999997 4566555444
No 145
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=72.94 E-value=24 Score=32.98 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=39.8
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhc-CCCCeeEEEE
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSD-KPENFHVAIV 69 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~-~~~~pDLVIl 69 (546)
|++..+|+++-..+.+.+.+..++.+.+.++. ...+.++++...+. . ..+|+||.
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~-~~~dVIIS 57 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQ-DEVDAIIS 57 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHT-TTCSEEEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhc-CCCeEEEE
Confidence 44557899999999999988888887666654 55677777765543 2 46787776
No 146
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=72.91 E-value=20 Score=34.85 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=50.1
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
.+.+.+|+.+.... ..|+|.+.-..+.. .-|++.+++++ ++|||.+.+- +.+.+.+++++||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 78899998877665 58999996644320 12577777654 6899999876 6777889999999999
Q ss_pred Ee
Q 009017 115 LR 116 (546)
Q Consensus 115 L~ 116 (546)
..
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 147
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=72.63 E-value=26 Score=34.92 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=72.8
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHhhCCCEEEEE-C--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcE
Q 009017 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVSTF-Y--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~-~~~~~L~~~Le~~Gy~V~~a-s--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPI 91 (546)
..+++|+.+.+ .....+..+.++.+ .++.+ . +.++..+.+.. .|++|+-... + .-|+.+++.+. .+||
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e-~~~~~~~EAma~G~Pv 357 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 357 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-C-CccHHHHHHHHCCCCe
Confidence 46777777654 33467777777777 54433 3 56666677765 5787775544 4 45778888886 8888
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|+. ... ...+.++.| .+++..|.+.++|.++|..++.
T Consensus 358 i~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 358 IAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred EEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 764 322 344455566 8999999999999999988876
No 148
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=71.78 E-value=16 Score=40.88 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=72.3
Q ss_pred CCEEEEE----eCCHHHHHHH----HHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HH----
Q 009017 17 GLRVLLL----DQDSSAAAEL----KFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SF---- 80 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L----~~~Le~~Gy~V~~---ass~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Gl---- 80 (546)
..+||+. |-+..=...+ ..+|+..||+|+. ..+.++.++.+.+ ..+|+|.+...|.. .+ .+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt-~dihL~~Mk 678 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISH-DDIHYKNMK 678 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCG-GGHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccC-chhhHHHHH
Confidence 4578777 4343333222 4678999999973 4578999999998 78999999987754 21 22
Q ss_pred HHHHHhC-----C-CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 81 KFLETAK-----D-LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 81 ellr~Lr-----~-iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
++++.|+ + ++|| +-+..-.+. -+.+.||+.|..--....++...|...+..
T Consensus 679 evIelLrE~GlrDkIkVI-VGGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 679 RIHELAVEKGIRDKIMIG-CGGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHHTTCTTTSEEE-EECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEE-EECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 2444443 2 4444 444332232 245899999998888877777766555543
No 149
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=71.74 E-value=21 Score=31.69 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=67.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHh--hC----CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLE--AM----DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le--~~----Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i 89 (546)
..+++|+.+.... ..+...++ .. .+.+.-.-+.++..+++.. .|++|+-.. .+ .-|+.+++.+. .+
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e-~~~~~~~Eama~G~ 122 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DE-DFGLTPIEAMASGK 122 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SC-CSCHHHHHHHHTTC
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cC-CCChHHHHHHHcCC
Confidence 3567777654332 23333333 21 2334444566677777776 577776333 33 45778888886 88
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||+.. .....+.+..|..+++. +.+.++|.++|..++.
T Consensus 123 PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~ 161 (177)
T 2f9f_A 123 PVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSK 161 (177)
T ss_dssp CEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHH
T ss_pred cEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHh
Confidence 988642 23455666778889999 9999999999888764
No 150
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=71.64 E-value=27 Score=34.96 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=57.8
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHhC---CCcEEEEecCCChHH
Q 009017 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLST 102 (546)
Q Consensus 33 L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~------~dGlellr~Lr---~iPIIvLSs~~d~e~ 102 (546)
+.+.+++.|..+. .+.+.+++...... ..|.|+++-.-.+. ...++++++++ ++|||+-.+-.+.+.
T Consensus 110 ~~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~ 186 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRG 186 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHH
T ss_pred HHHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 3344555576655 57788888776655 57888885321110 14577888876 689998888778889
Q ss_pred HHHHHHcCCCEEEeC
Q 009017 103 MMKCIALGAVEFLRK 117 (546)
Q Consensus 103 i~~Al~aGAdDYL~K 117 (546)
+.+++..||+.+..=
T Consensus 187 v~~al~~GAdgV~vG 201 (328)
T 2gjl_A 187 LVAALALGADAINMG 201 (328)
T ss_dssp HHHHHHHTCSEEEES
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999988763
No 151
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=71.33 E-value=39 Score=35.41 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=63.0
Q ss_pred CEEEEEeC----CHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC-----------CCCCCHH
Q 009017 18 LRVLLLDQ----DSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT-----------SNTDGSF 80 (546)
Q Consensus 18 ~rILIVDD----D~~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~m-----------p~~~dGl 80 (546)
..++++|- .....+.++.+-+..+..|. .+.+.++|..++.. ..|.|++...- .+ ...+
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g-~p~~ 232 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVG-VPQI 232 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBC-CCHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccc-hhHH
Confidence 45777642 23344555554444466655 68898888887765 58988884210 01 1234
Q ss_pred HHHHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 81 KFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 81 ellr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++..+. ++|||.-.+-.+...+.+++.+||+....=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555442 689998888888999999999999988653
No 152
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=70.20 E-value=22 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=14.6
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.||+.+. +.+......++|++..+.
T Consensus 98 ~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 98 DIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp SSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 455555443 444555556677765553
No 153
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=68.46 E-value=26 Score=35.21 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
|+++++|.||.--..- ..+...|... +++++ .++...+..+.+.. .+.+ .. - .+--++++. .++-+
T Consensus 2 M~~~~~vgiiG~G~~g-~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~-----~~-~-~~~~~~l~~-~~~D~ 69 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWA-YVMADAYTKSEKLKLVTCYSRTEDKREKFGK---RYNC-----AG-D-ATMEALLAR-EDVEM 69 (354)
T ss_dssp CCCCEEEEEECCSHHH-HHHHHHHTTCSSEEEEEEECSSHHHHHHHHH---HHTC-----CC-C-SSHHHHHHC-SSCCE
T ss_pred CCCcceEEEEccCHHH-HHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCC-----CC-c-CCHHHHhcC-CCCCE
Confidence 5567899999987644 4455555555 78866 45543443333332 1211 11 1 222334431 24555
Q ss_pred EEEecC--CChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 92 IITSNI--HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 92 IvLSs~--~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
|+++.. .-.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (354)
T 3db2_A 70 VIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQV 112 (354)
T ss_dssp EEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHH
Confidence 555443 34667889999999999999954 5666654443
No 154
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=68.42 E-value=16 Score=36.76 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=67.9
Q ss_pred CEEEEEeCC---HHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC
Q 009017 18 LRVLLLDQD---SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (546)
Q Consensus 18 ~rILIVDDD---~~~~~~L~~~Le~~Gy--~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i 89 (546)
.+++|+.+. ......+.+++++.|. .|.... +.++..+++.. .|++|+-.. .+ .-|+.+++.+. .+
T Consensus 277 ~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G~ 350 (438)
T 3c48_A 277 LRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NE-SFGLVAMEAQASGT 350 (438)
T ss_dssp EEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHHHHHHHHTTC
T ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-cc-CCchHHHHHHHcCC
Confidence 567777661 1334556666666543 244333 44677777766 477776443 33 44677888876 89
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
|||+. .... ..+.+..|..+++..+.+.++|.++|..++.
T Consensus 351 PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 351 PVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 98764 3322 3345667888999999999999999988875
No 155
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.27 E-value=14 Score=27.94 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=39.8
Q ss_pred CCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHh
Q 009017 304 GLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 357 (546)
Q Consensus 304 ~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~ 357 (546)
..+..||+|=.+++++||++.|..+ =+.|-+.| +|=|-.+++.|-++|-+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 4456899999999999999999643 35566666 68899999999888743
No 156
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=67.43 E-value=29 Score=34.98 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHhC---CCcEEEEecCCChHHHHH
Q 009017 34 KFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK---DLPTIITSNIHCLSTMMK 105 (546)
Q Consensus 34 ~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~----~dGlellr~Lr---~iPIIvLSs~~d~e~i~~ 105 (546)
.+.++..|..|. .+.+.++|...... ..|.|+++-.-.+. ...++++..++ ++|||+-.+-.+.+.+.+
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~ 193 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAA 193 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHH
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHH
Confidence 344555676655 57888888766554 57888886422220 24577777775 799998888888999999
Q ss_pred HHHcCCCEEEeC
Q 009017 106 CIALGAVEFLRK 117 (546)
Q Consensus 106 Al~aGAdDYL~K 117 (546)
++.+||+.+..=
T Consensus 194 al~~GA~gV~vG 205 (326)
T 3bo9_A 194 AFALGAEAVQMG 205 (326)
T ss_dssp HHHHTCSEEEES
T ss_pred HHHhCCCEEEec
Confidence 999999998764
No 157
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=66.56 E-value=39 Score=34.91 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 009017 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (546)
Q Consensus 17 ~~rILIVD----DD~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----------~d 78 (546)
+..+++|| +.....+.++.+-+.. +..|. .+.+.++|..+... ..|.|.+.+. |+. ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 35577775 3344445555555554 55554 58899999887766 5799888432 110 12
Q ss_pred HHHHHHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 79 SFKFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 79 Glellr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++++..+. ++|||..-+-.+...+.+++.+||+....=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 344444432 699998888888899999999999988653
No 158
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=65.87 E-value=13 Score=33.93 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=65.9
Q ss_pred CEEEEEe------CCHHHHHHHHHHHhhCCCEEEE---EC------------CHH----HHHHHhhcCCCCeeEEEEecC
Q 009017 18 LRVLLLD------QDSSAAAELKFKLEAMDYIVST---FY------------NEN----EALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 18 ~rILIVD------DD~~~~~~L~~~Le~~Gy~V~~---as------------s~~----eALe~L~~~~~~pDLVIlDl~ 72 (546)
++|.+.. .+......+.+.|++.| .|.. .. +.. .-++.++. -|+||..+.
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l~ 77 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEVT 77 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeCC
Confidence 5677662 44456688999999988 5631 11 111 11233333 589999888
Q ss_pred CCCCCCHHHHHHHhC-CCcEEEEecCC---ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 73 TSNTDGSFKFLETAK-DLPTIITSNIH---CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 73 mp~~~dGlellr~Lr-~iPIIvLSs~~---d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
-++...++|+--... ..||+++.... +...+.+....| ..|..+.+..++|..+|...+..
T Consensus 78 ~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 78 QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHh
Confidence 665223456554443 88999877632 333444444433 45777888778888777766543
No 159
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=65.72 E-value=20 Score=35.07 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvL 94 (546)
.+++|+.+... +.+..++++.|. .|......++..+++.. .|++|+-.. .+ .-|..+++.+. .+|||+.
T Consensus 229 ~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e-~~~~~~~Ea~a~G~Pvi~~ 300 (374)
T 2iw1_A 229 TLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QE-AAGIVLLEAITAGLPVLTT 300 (374)
T ss_dssp EEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CC-SSCHHHHHHHHHTCCEEEE
T ss_pred eEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cC-CcccHHHHHHHCCCCEEEe
Confidence 46667765432 345555554432 34444444455555555 477776543 23 45778888876 8999875
Q ss_pred ecCCChHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRK-PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~K-P~~~eeL~~~I~~vlr 133 (546)
...... +.+..|..+++.. |.+.++|.++|..++.
T Consensus 301 ~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 301 AVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp TTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred cCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 433333 3345567889997 8999999999988875
No 160
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=65.53 E-value=23 Score=32.37 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
+|++|||..-...+...+...|.+.|++|..+....+.+..+. ....++.+|+. +--++.+.++.+-+|+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~Dl~-----d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN---EHLKVKKADVS-----SLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC---TTEEEECCCTT-----CHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc---CceEEEEecCC-----CHHHHHHHhcCCCEEEEe
Confidence 3579999999999999999999999999886654333222111 23556666653 233444555666666655
Q ss_pred c
Q 009017 96 N 96 (546)
Q Consensus 96 s 96 (546)
.
T Consensus 75 a 75 (227)
T 3dhn_A 75 F 75 (227)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=65.38 E-value=16 Score=31.27 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
+.+|+|+.--. +...+...|.+.|++|+.++.-.+.++.+.. ....++..|.
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--~~~~~~~gd~ 57 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLED--EGFDAVIADP 57 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEECCT
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--CCCcEEECCC
Confidence 35788887754 6667777777788888766655555555554 3344444443
No 162
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=65.24 E-value=39 Score=34.50 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=54.4
Q ss_pred HhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC----CC-----------CCHHHHHHHhC---CCcEEEEecC
Q 009017 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS----NT-----------DGSFKFLETAK---DLPTIITSNI 97 (546)
Q Consensus 37 Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp----~~-----------~dGlellr~Lr---~iPIIvLSs~ 97 (546)
+...|..|. .+.+.+++...... ..|.|+++-... +. ...+++++.++ ++|||+..+-
T Consensus 141 ~~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 141 LRRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred HHHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 344566654 67888887766554 589999853111 10 12278888876 7999988877
Q ss_pred CChHHHHHHHHcCCCEEEe
Q 009017 98 HCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.+.+.+++..||+.+..
T Consensus 218 ~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 218 MRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 7899999999999988775
No 163
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=64.76 E-value=35 Score=34.35 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC----CCCHHHHHHHhC---CCcEEEEecCCChHHHHHH
Q 009017 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK---DLPTIITSNIHCLSTMMKC 106 (546)
Q Consensus 35 ~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~----~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~A 106 (546)
+.+++.|+.|. .+.+.+++...... ..|.|+++-.-.+ ....+++++.++ ++|||+..+-.+.+.+.++
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~a 180 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG 180 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 34445577655 57777776655544 5898888632111 023577888776 7999988888889999999
Q ss_pred HHcCCCEEEe
Q 009017 107 IALGAVEFLR 116 (546)
Q Consensus 107 l~aGAdDYL~ 116 (546)
+..||+.+..
T Consensus 181 l~~GAdgV~v 190 (332)
T 2z6i_A 181 FMLGAEAVQV 190 (332)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 9999988765
No 164
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.50 E-value=85 Score=32.42 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCEEEEEeCC----HHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 009017 17 GLRVLLLDQD----SSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (546)
Q Consensus 17 ~~rILIVDDD----~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----------~d 78 (546)
+..++.||-. ....+.++.+-+.. +..|. .+.+.++|..+... ..|.|++.+. ++. ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 3557777622 22233333322222 55555 47888888887765 5799988543 220 12
Q ss_pred HHHHHHHhCCC--cEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 79 SFKFLETAKDL--PTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 79 Glellr~Lr~i--PIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++.+..+... |||.-.+-.+...+.+|+.+||+....=
T Consensus 188 ~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 188 MLTCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34555555433 8888888888999999999999887753
No 165
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=63.15 E-value=24 Score=34.65 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCc
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLP 90 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iP 90 (546)
++|++++|.||.--..-...+...|.. .+++++ .++...+..+.+.. .+.+- . - .+--++++ ++-
T Consensus 2 ~~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~~~~---~---~-~~~~~ll~---~~D 68 (308)
T 3uuw_A 2 NAMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS---DYRIM---P---F-DSIESLAK---KCD 68 (308)
T ss_dssp ---CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH---HHTCC---B---C-SCHHHHHT---TCS
T ss_pred CccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---HcCCC---C---c-CCHHHHHh---cCC
Confidence 356678999999876655545665655 478877 55544443443332 12211 0 1 23334444 555
Q ss_pred EEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 91 IIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
+|+++... -.+.+..|+++|..=|+-||+ +.++....++.
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIEL 112 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHH
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHH
Confidence 66555433 356778899999999999997 45666654443
No 166
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=62.86 E-value=8 Score=30.92 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=37.3
Q ss_pred CccchhhhhhHHHHHHHhcCCCCChHH---HHHHhCCCCccHHHHHHHHHHHHhh
Q 009017 307 NSCGNKANRKKMKAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYRMH 358 (546)
Q Consensus 307 ~~~~~~lh~~f~~av~~lg~~~a~p~~---i~~~m~v~~l~~~~v~shlqkyr~~ 358 (546)
..||.+=+++|.+|+.+++.+ ||.+ |-+.| |=|-.+|+.|-+++...
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 379999999999999999854 5665 55555 68999999998877543
No 167
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=62.65 E-value=18 Score=35.88 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=22.4
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHhhCCCEEEEECCH
Q 009017 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYNE 50 (546)
Q Consensus 17 ~~rILIVDD----D~~~~~~L~~~Le~~Gy~V~~ass~ 50 (546)
|+|||++-. +-.-...|...|.+.|++|+.+...
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~ 41 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCH
Confidence 458888743 2233345677788889998877654
No 168
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=62.49 E-value=36 Score=34.98 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=71.5
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~-~~~~~L~~~Le~~Gy~V~-~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
..+++|+.+.+ ...+.++++.++.+-.|. ... +.++..+++.. .|++|+-.. .+ .-|+.+++.+. .+|||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E-~~~~~~lEAma~G~PvI 393 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FE-PCGLTQLYALRYGCIPV 393 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHHTCEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cC-CCCHHHHHHHHCCCCEE
Confidence 46788887764 356677777766553343 222 44444466665 577777544 34 45677888876 89988
Q ss_pred EEecCCChHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALG---------AVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aG---------AdDYL~KP~~~eeL~~~I~~vl 132 (546)
+. . .....+.+..| ..+|+..|.+.++|.++|..++
T Consensus 394 ~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 394 VA-R---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EE-S---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred Ee-C---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 64 2 23455566677 7899999999999999998887
No 169
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.19 E-value=46 Score=34.23 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=61.9
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC-----------CCCCHH
Q 009017 18 LRVLLLD----QDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----------NTDGSF 80 (546)
Q Consensus 18 ~rILIVD----DD~~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp-----------~~~dGl 80 (546)
..+++|| +.....+.++.+-+..+..|. .+.+.++|..++.. ..|.|.+...-. + ...+
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g-~p~~ 193 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVG-VPQI 193 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBC-CCHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCC-CCcH
Confidence 4456654 233344555555455566655 67888888777665 579888842110 1 1234
Q ss_pred HHHHHhC------CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 81 KFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 81 ellr~Lr------~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+++..+. ++|||.--+-.+...+.+++.+||+....=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444442 689998888778899999999999988653
No 170
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=62.08 E-value=11 Score=36.80 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 009017 304 GLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 358 (546)
Q Consensus 304 ~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~ 358 (546)
+...+||.+=++.|++|+.+.|-+ =..|-++ |.|=|..+|++|.++||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 345599999999999999999965 4556665 6789999999999999854
No 171
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=62.03 E-value=53 Score=32.11 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred HHHHHhhCCCEE--EEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHH
Q 009017 33 LKFKLEAMDYIV--STFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 33 L~~~Le~~Gy~V--~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~ 104 (546)
+++.|....-.+ .... +..+.++.+.. ..+|.||+|++-.. .+.-.+...++ ...+++=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav-~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAA-YTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSC-CCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCC-CCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Confidence 455665433322 2222 34556666666 57999999998765 55544444443 46666655666778899
Q ss_pred HHHHcCCCEEEeCCC-CHHHHHHHHH
Q 009017 105 KCIALGAVEFLRKPL-SEDKLRNLWQ 129 (546)
Q Consensus 105 ~Al~aGAdDYL~KP~-~~eeL~~~I~ 129 (546)
.+++.|++..+.-=+ +.+++...++
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~ 108 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVR 108 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHH
Confidence 999999988765433 5677665544
No 172
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=62.03 E-value=17 Score=34.64 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHHHHHHhC---CCcEEEEecCCC------hHHHHHHHHcCCCEEEeCCCCHHHH
Q 009017 79 SFKFLETAK---DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKL 124 (546)
Q Consensus 79 Glellr~Lr---~iPIIvLSs~~d------~e~i~~Al~aGAdDYL~KP~~~eeL 124 (546)
++++++.++ ++||++++.... .+.+..++++||+.++.-....++.
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHA 122 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhH
Confidence 366777776 579988874332 5678889999999999876555443
No 173
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=61.54 E-value=22 Score=35.90 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKL-EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~L-e~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
|+++||.||.--..-...+..+. ...+++++ .++...+..+.+... ..+++-.. .+--++++. .++-+|
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~-------~~~~~ll~~-~~~D~V 91 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK-YAIEAKDY-------NDYHDLIND-KDVEVV 91 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH-HTCCCEEE-------SSHHHHHHC-TTCCEE
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH-hCCCCeee-------CCHHHHhcC-CCCCEE
Confidence 45689999998776655555555 23578876 454333333333220 11111111 122334432 134455
Q ss_pred EEecC--CChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 93 ITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 93 vLSs~--~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
+++.. .-.+.+..|+++|..=|+-||+ +.++..+.++.
T Consensus 92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~ 133 (357)
T 3ec7_A 92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEA 133 (357)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHH
Confidence 55443 3467788999999999999996 56666655443
No 174
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=61.47 E-value=28 Score=35.78 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=69.5
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEE
Q 009017 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~-~~~~~L~~~Le~~Gy~V~-~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPII 92 (546)
..+++|+.+.+ ...+.++.+.++.+-.|. ... +.++..+++.. .|++|+-.. .+ .-|+.+++.+. .+|||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E-~~g~~~lEAma~G~PvI 394 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FE-PCGLTQLYGLKYGTLPL 394 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHHTCEEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cC-CCcHHHHHHHHCCCCEE
Confidence 35677776543 356667776666553343 222 33443456655 477776543 33 45677888776 89988
Q ss_pred EEecCCChHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMMKCIALG---------AVEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aG---------AdDYL~KP~~~eeL~~~I~~vl 132 (546)
+.. .....+.+..| ..+|+..|-+.++|.++|..++
T Consensus 395 ~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 395 VRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred ECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 642 23455566677 8899999999999999998887
No 175
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=61.42 E-value=26 Score=34.92 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=57.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
.++++|.||.--..-...+..+.+..+++++ .++...+..+.+.. .+.+-..+ +--++++. .++-+|+
T Consensus 2 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~g~~~~~-------~~~~~l~~-~~~D~V~ 70 (344)
T 3euw_A 2 SLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE---ANGAEAVA-------SPDEVFAR-DDIDGIV 70 (344)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---TTTCEEES-------SHHHHTTC-SCCCEEE
T ss_pred CCceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCCceeC-------CHHHHhcC-CCCCEEE
Confidence 3468999999866555444444443478876 45544444444433 12221211 11122221 1455555
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
++... -.+.+..|+++|..-|+-||+. .++....+.
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~ 110 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKE 110 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHH
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 55433 3567889999999999999954 455554433
No 176
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=61.36 E-value=50 Score=31.27 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCCeeE-EEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 50 ENEALSAFSDKPENFHV-AIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDL-VIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+.++.+.. ..++. ++.+..-.+...| ++++++++ ++|||+..+-.+.+.+.++++.||+.++.=
T Consensus 153 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG 224 (253)
T 1thf_D 153 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 224 (253)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH
Confidence 4555555555 45664 4455542221122 78888886 689999888888899999999999998764
No 177
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=60.30 E-value=43 Score=28.57 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhh---cCCCCeeEEEEecCCCCCCCHHHHHHHhC---CC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFS---DKPENFHVAIVEVTTSNTDGSFKFLETAK---DL 89 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~---~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~i 89 (546)
..|+|.||.| ...... ++-.|+++..+.+.+++.+.++ ++ ..+.+|++.-.+.+ .--+.++.++ ..
T Consensus 2 ~~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~-~digIIlIte~~a~--~i~~~i~~~~~~~~~ 73 (109)
T 2d00_A 2 VPVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVER-GGYALVAVDEALLP--DPERAVERLMRGRDL 73 (109)
T ss_dssp CCCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHH-CCCSEEEEETTTCS--CHHHHHHHHTTCCCC
T ss_pred CccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhC-CCeEEEEEeHHHHH--hhHHHHHHHHhCCCC
Confidence 3568999998 443322 3346888888888877655443 32 47899999988765 3445666664 57
Q ss_pred cEEEEec
Q 009017 90 PTIITSN 96 (546)
Q Consensus 90 PIIvLSs 96 (546)
|+|+.-.
T Consensus 74 P~Il~IP 80 (109)
T 2d00_A 74 PVLLPIA 80 (109)
T ss_dssp CEEEEES
T ss_pred eEEEEEC
Confidence 8777544
No 178
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=59.63 E-value=20 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=13.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVS 45 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~ 45 (546)
+|||+..|......+.+++...||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 455555555555544444444455443
No 179
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=59.48 E-value=22 Score=35.04 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHH------------HHHHhhcCCCCeeEEEEe---c------
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENE------------ALSAFSDKPENFHVAIVE---V------ 71 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~e------------ALe~L~~~~~~pDLVIlD---l------ 71 (546)
.||.+|+|++++.+...... .+.|.+.|++|....-.++ ..+.+. ..|+||+- .
T Consensus 3 ~~~~~mki~v~~~~~~~~~~-~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~----~~d~ii~~~~~~~~~~~i 77 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEI-IRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ----QIDSIILPVSATTGEGVV 77 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHH-HHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG----GCSEEECCSSCEETTTEE
T ss_pred ccccCCEEEEECCCHHHHHH-HHHHHhCCCEEEEEeccccccccccceeccchHHHHh----cCCEEEeccccccCCccc
Confidence 45667899999988766554 4556778999875531111 112222 36888861 1
Q ss_pred -----CCCCCCCHHHHHHHhCCCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 72 -----TTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 72 -----~mp~~~dGlellr~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..+. .-.-++++.++...+|+ ++.+..+....+.+.|+.-+-.
T Consensus 78 ~s~~a~~~~-~~~~~~l~~~~~l~~i~-~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 78 STVFSNEEV-VLKQDHLDRTPAHCVIF-SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp CBSSCSSCE-ECCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHTTCCEEEG
T ss_pred ccccccCCc-cchHHHHhhcCCCCEEE-EecCCHHHHHHHHHCCCEEEee
Confidence 1110 00246677777777776 7776666577888888765443
No 180
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=59.42 E-value=39 Score=31.09 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=55.0
Q ss_pred EEEEeCCH--HHHHHHHHHHhhCCCEEEE----ECCHHHHHHHhhcCCCCeeEEEEecCCCC---CCCHHHHHHHhC---
Q 009017 20 VLLLDQDS--SAAAELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVAIVEVTTSN---TDGSFKFLETAK--- 87 (546)
Q Consensus 20 ILIVDDD~--~~~~~L~~~Le~~Gy~V~~----ass~~eALe~L~~~~~~pDLVIlDl~mp~---~~dGlellr~Lr--- 87 (546)
.+++-+.. .....+.+.+++.|..+.. ..+..+.++.+.+ ...|+|.++....+ ...+++.+++++
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHHHC
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHHHc
Confidence 34444433 3335566666667777653 2344344444444 34788777632110 012456666665
Q ss_pred -CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
++||++..+- +.+.+.+++++||+.++.=
T Consensus 158 ~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 158 RKARIAVAGGI-SSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp SSCEEEEESSC-CTTTHHHHHTTCCSEEEEC
T ss_pred CCCcEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 5777765555 4778889999999998763
No 181
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=59.25 E-value=17 Score=35.49 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCCEEEEEeCC--------------------HHHHHHHHHHHhhCCCEEEEECCHH-----------------HHHHHhh
Q 009017 16 KGLRVLLLDQD--------------------SSAAAELKFKLEAMDYIVSTFYNEN-----------------EALSAFS 58 (546)
Q Consensus 16 ~~~rILIVDDD--------------------~~~~~~L~~~Le~~Gy~V~~ass~~-----------------eALe~L~ 58 (546)
++||||+|... ......+...|.+.|++|..+.... ...+.++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR 81 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH
Confidence 35799999876 2345567778888899988765432 3445555
Q ss_pred cCCCCeeEEEEecCC
Q 009017 59 DKPENFHVAIVEVTT 73 (546)
Q Consensus 59 ~~~~~pDLVIlDl~m 73 (546)
. ..||+|++-...
T Consensus 82 ~--~~~Dvi~~~~~~ 94 (342)
T 2iuy_A 82 T--ADVDVVHDHSGG 94 (342)
T ss_dssp H--CCCSEEEECSSS
T ss_pred h--cCCCEEEECCch
Confidence 5 567777775543
No 182
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=58.18 E-value=32 Score=31.99 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C----CC---CCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHH
Q 009017 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T----SN---TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIA 108 (546)
Q Consensus 41 Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~-m----p~---~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~ 108 (546)
|..+. .+.+.+++...... ..|+|.+... . .+ ...+++++++++ ++|||+..+-.+.+.+.++++
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHH
Confidence 56543 66788887775554 4687765321 0 11 012356677775 789998888779999999999
Q ss_pred cCCCEEEeC
Q 009017 109 LGAVEFLRK 117 (546)
Q Consensus 109 aGAdDYL~K 117 (546)
+||+.++.=
T Consensus 196 ~Gad~v~vG 204 (223)
T 1y0e_A 196 LGVHCSVVG 204 (223)
T ss_dssp TTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999999874
No 183
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=58.14 E-value=23 Score=32.32 Aligned_cols=70 Identities=6% Similarity=0.064 Sum_probs=49.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
|+|||..-...+...+...|.+.|++|..+....+.+..+.. ....++..|+.-++ . +.+..+-+|+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~---~----~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT---E----ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC---H----HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc---H----hhcccCCEEEECC
Confidence 479999999999999999998889998855544444454444 46788888887555 2 4455666666554
No 184
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=57.80 E-value=52 Score=31.12 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC------C
Q 009017 51 NEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK------P 118 (546)
Q Consensus 51 ~eALe~L~~~~~~pD-LVIlDl~mp~~~dG--lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K------P 118 (546)
.+.++.+.. ..++ +++.+..-.+...| ++++++++ ++|||...+-.+.+.+.++++.||++++.= +
T Consensus 155 ~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 444444444 3355 55555543221223 78888876 799999988888899999999999998763 4
Q ss_pred CCHHHHHHH
Q 009017 119 LSEDKLRNL 127 (546)
Q Consensus 119 ~~~eeL~~~ 127 (546)
++..++...
T Consensus 233 ~~~~~~~~~ 241 (252)
T 1ka9_F 233 IPIPKLKRY 241 (252)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566555543
No 185
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=57.67 E-value=56 Score=32.65 Aligned_cols=104 Identities=10% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCc
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLP 90 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iP 90 (546)
.|++++||.||.--..-.......|... +++++ .++...+..+ . ..+.+-+. .+--+++.. .++-
T Consensus 3 ~M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~--~~~~~~~~-------~~~~~ll~~-~~vD 69 (352)
T 3kux_A 3 AMADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---A--DWPAIPVV-------SDPQMLFND-PSID 69 (352)
T ss_dssp TTTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---T--TCSSCCEE-------SCHHHHHHC-SSCC
T ss_pred cccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---h--hCCCCceE-------CCHHHHhcC-CCCC
Confidence 3566799999998765554344555544 78876 4443333222 2 11111111 122233332 2455
Q ss_pred EEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 91 IIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+|+++... -.+.+..|+++|..=|+-||+ +.++....++
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~ 112 (352)
T 3kux_A 70 LIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKE 112 (352)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHH
Confidence 55555433 367788999999999999994 5666665444
No 186
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=57.57 E-value=25 Score=32.75 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++|++|||..-...+...+...|.+.| ++|..+....+.+..+.. ....++.+|+. + .-++.+.+..+-+|+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~--~~~~~~~~Dl~--d---~~~~~~~~~~~D~vv 93 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP--TNSQIIMGDVL--N---HAALKQAMQGQDIVY 93 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC--TTEEEEECCTT--C---HHHHHHHHTTCSEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc--CCcEEEEecCC--C---HHHHHHHhcCCCEEE
Confidence 345689999989999999999999899 888755433322222222 34556666653 2 223444455555665
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
...
T Consensus 94 ~~a 96 (236)
T 3qvo_A 94 ANL 96 (236)
T ss_dssp EEC
T ss_pred EcC
Confidence 443
No 187
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=57.48 E-value=76 Score=31.11 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=56.2
Q ss_pred CEEEEE-eCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEE
Q 009017 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (546)
Q Consensus 18 ~rILIV-DDD~~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIv 93 (546)
.+++++ .+++..++.+++.+...+ .|.... ...+..+++.. .|++|+.- .|+ +++.+. .+|+|+
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~S------~g~-~lEA~a~G~PvI~ 298 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTDS------GGL-QEEGAALGVPVVV 298 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEESC------HHH-HHHHHHTTCCEEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEECC------cCH-HHHHHHcCCCEEe
Confidence 455554 555544555555543221 343331 23344455544 57777642 355 556665 899987
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.........+ ++.| .+++.. .+.++|.++|..++.
T Consensus 299 ~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 299 LRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp CSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred ccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 6443343333 4455 467774 499999999888774
No 188
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=57.28 E-value=1.5e+02 Score=30.26 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=61.4
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC-----------CCCCH
Q 009017 18 LRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----------NTDGS 79 (546)
Q Consensus 18 ~rILIVD----DD~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp-----------~~~dG 79 (546)
..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+... ..|.|++...-. + ..-
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g~G~~~~~r~~~g~~-~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIGPGSVCTTRKKTGVG-YPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTBCHHHHHCBC-CCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCcCccccCCCC-ccH
Confidence 4566665 2333444555444444 55543 67888998887766 579887753210 0 112
Q ss_pred HHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEe-CCC
Q 009017 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLR-KPL 119 (546)
Q Consensus 80 lellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~-KP~ 119 (546)
+.++..+ + ++|||.-.+-.+...+.+|+.+||+.... ++|
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 3333332 2 68999888888999999999999998744 444
No 189
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=57.24 E-value=14 Score=36.25 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=48.8
Q ss_pred CCEEE--EECCHHHHHHHhhcCCCCeeEEEE-ecCCCC--CCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCC
Q 009017 41 DYIVS--TFYNENEALSAFSDKPENFHVAIV-EVTTSN--TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAV 112 (546)
Q Consensus 41 Gy~V~--~ass~~eALe~L~~~~~~pDLVIl-Dl~mp~--~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAd 112 (546)
|+.+. ++.+.+++...... ..|+|+. -..... ...+.++++.++ ++|||+..+-.+.+.+.+++++||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 76655 45576666555443 3566633 100110 022466666665 7999999888889999999999999
Q ss_pred EEEeC
Q 009017 113 EFLRK 117 (546)
Q Consensus 113 DYL~K 117 (546)
.+++=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99875
No 190
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=57.10 E-value=33 Score=35.47 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=65.9
Q ss_pred HHHHHHHHhhCCCE--EEEE--CCHHHHHHHhhcCCCCe----eEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCCh
Q 009017 30 AAELKFKLEAMDYI--VSTF--YNENEALSAFSDKPENF----HVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCL 100 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~--V~~a--ss~~eALe~L~~~~~~p----DLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~ 100 (546)
...+.+.+++.|.. |... -+.++..+++.. . |++|+-.. .+ .-|+.+++.+. .+|||+.. .
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~E-g~~~~~lEAma~G~PvI~s~-~--- 390 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-YE-PFGLAPVEAMASGLPAVVTR-N--- 390 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-CB-CCCSHHHHHHHTTCCEEEES-S---
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-cC-CCCcHHHHHHHcCCCEEEec-C---
Confidence 66777777776643 4433 345777777776 5 88877543 33 45677888876 89988643 2
Q ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 101 STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
....+.+..|..+++..|.+.++|.++|..++.
T Consensus 391 ~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 391 GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 234556677788999999999999999988764
No 191
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=56.26 E-value=17 Score=35.89 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=55.5
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH------------HHHHHHhhcCCCCeeEEEEec---C------
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE------------NEALSAFSDKPENFHVAIVEV---T------ 72 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~------------~eALe~L~~~~~~pDLVIlDl---~------ 72 (546)
|+.+|+|+|++.+...... .+.|.+.||+|....-. ++..+.+. ..|+||+-. .
T Consensus 2 ~~~~m~i~v~~~~~~~~~~-~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~ii~~~~~~~~~~~i~ 76 (293)
T 3d4o_A 2 MLTGKHVVIIGGDARQLEI-IRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN----TVDAILLPISGTNEAGKVD 76 (293)
T ss_dssp CCTTCEEEEECBCHHHHHH-HHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG----GCSEEECCTTCCCTTCBCC
T ss_pred CccCcEEEEECCCHHHHHH-HHHHHhCCCEEEEeccccccccccccccccchHHHHh----cCCEEEeccccccCCceee
Confidence 4567899999988766654 45567789998765321 11122222 368888731 0
Q ss_pred -----CCCCCCHHHHHHHhCCCcEEEEecCCChHHHHHHHHcCCCE
Q 009017 73 -----TSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVE 113 (546)
Q Consensus 73 -----mp~~~dGlellr~Lr~iPIIvLSs~~d~e~i~~Al~aGAdD 113 (546)
-+. .=.-++++.++.+.+|+ ++.+..+....+.+.|+.-
T Consensus 77 ~~~~~~~~-~~~~~~l~~~~~l~~i~-~G~d~id~~~~~~~~gi~v 120 (293)
T 3d4o_A 77 TIFSNESI-VLTEEMIEKTPNHCVVY-SGISNTYLNQCMKKTNRTL 120 (293)
T ss_dssp BSSCSCCC-BCCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHHTCEE
T ss_pred cccccCCc-cchHHHHHhCCCCCEEE-ecCCCHHHHHHHHHcCCeE
Confidence 010 00246777777777776 6776655445677777643
No 192
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=56.14 E-value=12 Score=37.87 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=60.0
Q ss_pred EEEEeCCHHHHHHHHHHHh----hCC-C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 20 VLLLDQDSSAAAELKFKLE----AMD-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le----~~G-y-~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
|||-|++-...-.+...++ ... . ..+.+.+.+|+.+.+.. ..|+|.+|-.-++ +--+.++.++.-..|.
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~~--~l~~av~~~~~~v~le 255 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSIS--EIKKAVDIVNGKSVLE 255 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEEE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCceEEE
Confidence 7777766544433333332 222 2 24589999999999987 4899999963332 2233455555555677
Q ss_pred EecCCChHHHHHHHHcCCCEEE
Q 009017 94 TSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL 115 (546)
.|+.-+.+.+.+..+.|+|.+-
T Consensus 256 aSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 256 VSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EESSCCTTTHHHHHTTTCSEEE
T ss_pred EECCCCHHHHHHHHHcCCCEEE
Confidence 8888888888888889987654
No 193
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=55.91 E-value=22 Score=37.23 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPII 92 (546)
..|+|||.|+...+.++ ..|+.++..+ +-.+.|+.+.- ...|+||+-+.-.. ..+.++..++ ++.||
T Consensus 28 ~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~~--~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 28 VKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQ--TNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp CCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSHH--HHHHHHHHHHHHCTTCEEE
T ss_pred CCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCChH--HHHHHHHHHHHhCCCCeEE
Confidence 45677777766544332 3455544322 11234444433 45788887654222 1233333333 56677
Q ss_pred EEecCCChHHHHHHHHcCCCEEEeC
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+.+. +........++||+..+.-
T Consensus 100 ara~--~~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 100 ARAR--DVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp EEES--SHHHHHHHHHTTCSSCEET
T ss_pred EEEC--CHHHHHHHHHCCCCEEECc
Confidence 6665 5667777889999887653
No 194
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=55.32 E-value=37 Score=34.27 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
|++++|.||.--..-...+...|... +++++ .++...+..+.+.. .-...-+. .+--++++. .++-+|
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~--~~~~~~~~-------~~~~~ll~~-~~vD~V 72 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR--FISDIPVL-------DNVPAMLNQ-VPLDAV 72 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG--TSCSCCEE-------SSHHHHHHH-SCCSEE
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH--hcCCCccc-------CCHHHHhcC-CCCCEE
Confidence 34589999998876654344455544 78876 55544454455544 11111111 122344443 244555
Q ss_pred EEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 93 ITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 93 vLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
+++... -.+.+..|+++|..=|+-||+ +.++..+.++.
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 114 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDA 114 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 554432 356788999999999999996 45666655443
No 195
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=54.69 E-value=62 Score=29.96 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=45.2
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCC-------CCCHHHHHHHhC---C-CcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~-------~~dGlellr~Lr---~-iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
.+.+..++...... .+|.|++....+. ...+++.++.++ . +||++..+-. .+.+.+++++||+.+
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 45788886665544 5899987322210 023577777765 5 8988876655 677778889999988
Q ss_pred EeC
Q 009017 115 LRK 117 (546)
Q Consensus 115 L~K 117 (546)
..=
T Consensus 198 ~vg 200 (227)
T 2tps_A 198 SMI 200 (227)
T ss_dssp EES
T ss_pred EEh
Confidence 653
No 196
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=54.61 E-value=63 Score=31.69 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 82 FLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 82 llr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+++.+. .+|||+......... .++.| .+++..+ +.++|.++|..++.
T Consensus 294 ~lEA~a~G~PvI~~~~~~~~~e---~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 294 QEEAPSLGKPVLVMRDTTERPE---AVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GGTGGGGTCCEEEESSCCSCHH---HHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEccCCCCcch---hhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 445544 799987643233222 35668 8899987 99999999988875
No 197
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=54.24 E-value=97 Score=30.72 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHHHHhhCCC-EEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHH
Q 009017 33 LKFKLEAMDY-IVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 33 L~~~Le~~Gy-~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~ 104 (546)
+++.|+. |. .+. .-.+..+.++.+.. ..+|.|++|++-.. .+--++...++ ..++++=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHHHHH
Confidence 5566654 43 333 22334455566666 57999999997654 44333333332 46677777777888899
Q ss_pred HHHHcCCCEEEeCC-CCHHHHHHHHH
Q 009017 105 KCIALGAVEFLRKP-LSEDKLRNLWQ 129 (546)
Q Consensus 105 ~Al~aGAdDYL~KP-~~~eeL~~~I~ 129 (546)
.+++.|++..+.-= -+.+++...++
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 99999998765532 34677555433
No 198
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=54.14 E-value=20 Score=35.24 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=63.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC------CCCCCHHHHHHHhC-C
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT------SNTDGSFKFLETAK-D 88 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~m------p~~~dGlellr~Lr-~ 88 (546)
.+++|+.+.+. ...++.+.....-.|. -.-+.++..+++.. .|++|+-... .+ .-|+.+++.+. .
T Consensus 230 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e-~~~~~~~Ea~a~G 303 (394)
T 3okp_A 230 AQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVE-GLGIVYLEAQACG 303 (394)
T ss_dssp CEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCC-SSCHHHHHHHHTT
T ss_pred eEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCcccccccccc-ccCcHHHHHHHcC
Confidence 56666665432 2333333322111233 23344666666665 4777775443 13 45678888876 8
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+|||+ +.... ..+.+..| .+++..+-+.++|.++|..++.
T Consensus 304 ~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 304 VPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp CCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 89886 33322 23345667 8999999999999999988774
No 199
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=54.06 E-value=36 Score=29.20 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=67.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CC-cEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST-FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL-PTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~-ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~i-PIIv 93 (546)
..+++|+.+.+. ...+..++++.+..+.. +-+.++..+++.. .|++|+-.. .+ .-|+.+++.+. .+ |||.
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VE-SEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SC-CCCHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-cc-CccHHHHHHHhcCCCcEEe
Confidence 467888887553 46677777777765554 2235666677665 588887544 34 45788888886 75 8887
Q ss_pred EecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+....... .+..+. ++..+-+.++|..+|..++.
T Consensus 105 ~~~~~~~~~---~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 105 NSPLSATRQ---FALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp CCTTCGGGG---GCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred eCCCCchhh---hccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 332222221 222232 37788999999999988875
No 200
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=53.99 E-value=1e+02 Score=27.98 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=45.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHh-hCCCEEEEEC-CHHHHHHHh--hcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLE-AMDYIVSTFY-NENEALSAF--SDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le-~~Gy~V~~as-s~~eALe~L--~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
.+|||..-...+...+...|. +.|++|+.+. +.++.++.+ .. ....++.+|+. + --++.+.+..+-+|+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~--d---~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDH--ERVTVIEGSFQ--N---PGXLEQAVTNAEVVF 78 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTS--TTEEEEECCTT--C---HHHHHHHHTTCSEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCC--CceEEEECCCC--C---HHHHHHHHcCCCEEE
Confidence 359999988888888888887 7899988544 444144443 22 34566666653 2 223444455666666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
...
T Consensus 79 ~~a 81 (221)
T 3r6d_A 79 VGA 81 (221)
T ss_dssp ESC
T ss_pred EcC
Confidence 554
No 201
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=53.69 E-value=13 Score=37.09 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCEEEEEeCC-----HHHHHHHHHHHhhCC-CEEEEECCHH-----HHHHHhhcCCCCeeEEEEecCCCCCCCHH--H-H
Q 009017 17 GLRVLLLDQD-----SSAAAELKFKLEAMD-YIVSTFYNEN-----EALSAFSDKPENFHVAIVEVTTSNTDGSF--K-F 82 (546)
Q Consensus 17 ~~rILIVDDD-----~~~~~~L~~~Le~~G-y~V~~ass~~-----eALe~L~~~~~~pDLVIlDl~mp~~~dGl--e-l 82 (546)
.++||||... +.....|..+|++.| |+|.+..+.. +.+.. .- ..+|+||++..... .+.. + |
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~-~L--~~~D~vV~~~~~~~-l~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL-DF--SPYQLVVLDYNGDS-WPEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC-CC--TTCSEEEECCCSSC-CCHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh-hh--hcCCEEEEeCCCCc-CCHHHHHHH
Confidence 5799999762 566688999999888 9999876531 22211 11 35999998775433 3221 1 2
Q ss_pred HHHhC-CCcEEEEe
Q 009017 83 LETAK-DLPTIITS 95 (546)
Q Consensus 83 lr~Lr-~iPIIvLS 95 (546)
.+.++ ...+|++=
T Consensus 80 ~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQNGGGVVIYH 93 (281)
T ss_dssp HHHHHTTCEEEEEG
T ss_pred HHHHHcCCCEEEEe
Confidence 22333 46666663
No 202
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=53.49 E-value=39 Score=31.66 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~---V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
..+|..||-++...+..++.++..|+. |. ...+..+.+..+.. ..||+|++|.....
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~ 141 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD 141 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH
Confidence 468999999999999999999988764 55 45566665554434 57999999976443
No 203
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=53.47 E-value=1.3e+02 Score=29.26 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
.+...++.. .|++|+.. |.-+++.+. .+|||+....... .+.++.| .+++..+ +.++|.++|.
T Consensus 274 ~~~~~~~~~----ad~~v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~ 337 (375)
T 3beo_A 274 IDFHNVAAR----SYLMLTDS-------GGVQEEAPSLGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLAD 337 (375)
T ss_dssp HHHHHHHHT----CSEEEECC-------HHHHHHHHHHTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHH
T ss_pred HHHHHHHHh----CcEEEECC-------CChHHHHHhcCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHH
Confidence 344455544 46776632 333666665 8999866321222 3346778 8899876 9999999998
Q ss_pred HHHH
Q 009017 130 HVVH 133 (546)
Q Consensus 130 ~vlr 133 (546)
.++.
T Consensus 338 ~ll~ 341 (375)
T 3beo_A 338 ELLS 341 (375)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 204
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=52.53 E-value=26 Score=32.44 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHH
Q 009017 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIA 108 (546)
Q Consensus 35 ~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~ 108 (546)
+..+..|..+. .+.+..++...... ..|+|++ .+....|++.+++++ ++||++..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 44555666533 57888888776554 5798886 221022567776664 37888777665 777888899
Q ss_pred cCCCEEEeC
Q 009017 109 LGAVEFLRK 117 (546)
Q Consensus 109 aGAdDYL~K 117 (546)
+||+.+..=
T Consensus 168 ~Ga~gv~vG 176 (212)
T 2v82_A 168 AGCAGAGLG 176 (212)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999999754
No 205
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=52.50 E-value=69 Score=32.34 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=23.6
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
||.+.+|||+...... ..+...+++.|++++.++
T Consensus 4 m~~~~~ilI~g~g~~~-~~~~~a~~~~G~~~v~v~ 37 (403)
T 4dim_A 4 MYDNKRLLILGAGRGQ-LGLYKAAKELGIHTIAGT 37 (403)
T ss_dssp --CCCEEEEECCCGGG-HHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEECCcHhH-HHHHHHHHHCCCEEEEEc
Confidence 5567899999998753 445666778899877553
No 206
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=52.28 E-value=87 Score=33.66 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC----------CCCH
Q 009017 17 GLRVLLLDQ----DSSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN----------TDGS 79 (546)
Q Consensus 17 ~~rILIVDD----D~~~~~~L~~~Le~~G-y~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~----------~~dG 79 (546)
+..+++||. .....+.++.+-+..+ ..|+ .+.+.++|..+... ..|.|++++.-.. ....
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 345667763 2233344444444432 3433 57788887777665 4788887442110 0122
Q ss_pred HHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+.++..+ + ++|||.-.+-.+...+.+|+.+||+..+.=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4444433 2 599998888889999999999999998764
No 207
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=51.88 E-value=48 Score=31.35 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=48.1
Q ss_pred HHHHHHhhCCCEEE-EEC--CHHHHHHHhhcCCCCee-EEEEecCCCCCCC---------HHHHHHHhC---CCcEEEEe
Q 009017 32 ELKFKLEAMDYIVS-TFY--NENEALSAFSDKPENFH-VAIVEVTTSNTDG---------SFKFLETAK---DLPTIITS 95 (546)
Q Consensus 32 ~L~~~Le~~Gy~V~-~as--s~~eALe~L~~~~~~pD-LVIlDl~mp~~~d---------Glellr~Lr---~iPIIvLS 95 (546)
.+.+.+++.|..+. .++ +..+.++.+.. . .| +|.+ +..++ .. +++.+++++ ++||++-.
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~--~-~d~~i~~-~~~~G-~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~G 198 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDD--M-TTGFVYL-VSLYG-TTGAREEIPKTAYDLLRRAKRICRNKVAVGF 198 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHH--H-CSSEEEE-ECCC--------CCCHHHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHh--c-CCCeEEE-EECCc-cCCCCCCCChhHHHHHHHHHhhcCCCEEEEe
Confidence 34444555565543 222 44555655554 2 23 4433 22233 22 345666665 68988877
Q ss_pred cCCChHHHHHHHHcCCCEEEeC
Q 009017 96 NIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 96 s~~d~e~i~~Al~aGAdDYL~K 117 (546)
+-...+.+.+++++||+.++.=
T Consensus 199 GI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 199 GVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCHHHHHHHHHcCCCEEEEc
Confidence 7777688999999999999875
No 208
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=51.65 E-value=1.2e+02 Score=29.44 Aligned_cols=93 Identities=8% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHHHhhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----CCcEEEEecCCChHHHH
Q 009017 33 LKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 33 L~~~Le~~Gy---~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~ 104 (546)
+++.|.. |. .+...-...+.++.+.. ..+|.|++|++-.- .+--++...++ ..++++=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~-~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSC-CCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence 5555654 43 23333344555666666 57999999997654 44433333332 45666666677888899
Q ss_pred HHHHcCCCEEEeC-CCCHHHHHHHHH
Q 009017 105 KCIALGAVEFLRK-PLSEDKLRNLWQ 129 (546)
Q Consensus 105 ~Al~aGAdDYL~K-P~~~eeL~~~I~ 129 (546)
.+++.|++..+.- =-+.+++...++
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~ 110 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHH
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHH
Confidence 9999999876542 235677555433
No 209
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=51.45 E-value=25 Score=35.41 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHHHHHHHHh---hCC--CE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 20 VLLLDQDSSAAAELKFKLE---AMD--YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le---~~G--y~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
|||-|++-.....+...++ +.. .. .+.+.+.+|+.+.+.. ..|+|.+|-.-++ +--+.++.++.-..|.
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~~--~l~~av~~~~~~v~ie 246 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSGE--DIDIAVSIARGKVALE 246 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTTCEEE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCHH--HHHHHHHhhcCCceEE
Confidence 6776666444333333332 212 22 4489999999998887 4899999964332 2223445555445666
Q ss_pred EecCCChHHHHHHHHcCCCEEE
Q 009017 94 TSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 94 LSs~~d~e~i~~Al~aGAdDYL 115 (546)
.|+.-+.+.+.+..+.|+|.+-
T Consensus 247 aSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 247 VSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EESSCCTTTHHHHHTTTCSEEE
T ss_pred EECCCCHHHHHHHHHcCCCEEE
Confidence 8888888888888899987664
No 210
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=51.19 E-value=43 Score=32.63 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHhC----CCcEEEEecCCC------hHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 80 FKFLETAK----DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 80 lellr~Lr----~iPIIvLSs~~d------~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
+++++.+| ++|+++++-... ...+..+.++|+++++.-.+..+++...+.
T Consensus 82 ~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 82 LELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp HHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 35566665 579999854321 355677889999999998787776555443
No 211
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=50.97 E-value=25 Score=28.98 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=35.7
Q ss_pred ccchhhhhhHHHHHHHhc-CCCCChH----------------HHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 009017 308 SCGNKANRKKMKAVEQLG-VDQAIPS----------------RILELMKVEGLTRHNVASHLQKYRMHRRH 361 (546)
Q Consensus 308 ~~~~~lh~~f~~av~~lg-~~~a~p~----------------~i~~~m~v~~l~~~~v~shlqkyr~~~~~ 361 (546)
-|.++|-..|++|++..= .+....+ +|..-.| +-=|+.+|.||||--+..+.+
T Consensus 8 vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 8 VWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp CSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 799999999999999875 3333221 1222333 345788899999987765543
No 212
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=50.73 E-value=34 Score=34.60 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
.|||||+.- -.+...+...|.+ .++|..+.-..+.++.+.. ....+-+|+. |--++.+.+++.-+|+.+.
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~-----d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS-----NFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT-----CHHHHHHHHTTCSEEEECC
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC-----CHHHHHHHHhCCCEEEEec
Confidence 478999987 7778888888875 4888877655666666655 2445556652 3334555667665555443
Q ss_pred --CCChHHHHHHHHcCCCEEEeCCCCHH
Q 009017 97 --IHCLSTMMKCIALGAVEFLRKPLSED 122 (546)
Q Consensus 97 --~~d~e~i~~Al~aGAdDYL~KP~~~e 122 (546)
......+..|+++|. .|+.--+..+
T Consensus 86 p~~~~~~v~~~~~~~g~-~yvD~s~~~~ 112 (365)
T 3abi_A 86 PGFLGFKSIKAAIKSKV-DMVDVSFMPE 112 (365)
T ss_dssp CGGGHHHHHHHHHHHTC-EEEECCCCSS
T ss_pred CCcccchHHHHHHhcCc-ceEeeeccch
Confidence 234567788999997 4776544433
No 213
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=50.54 E-value=24 Score=35.14 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=45.1
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.|++|+-.. .+ .-|+.+++.+. .+|||+..... ..+.+..|-.+++..+-+.++|.++|..++.
T Consensus 285 adv~v~ps~-~e-~~~~~~~EAma~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KE-SFGLVLLEAMACGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CC-SCCHHHHHHHHTTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cC-CCchHHHHHHhcCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 477776543 33 45677888876 89988654322 2233455778999999999999999988775
No 214
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=50.43 E-value=79 Score=31.49 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred CEEEEEeCC----HHHHHHHHHHHhhCCC--EEEEEC-----CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQD----SSAAAELKFKLEAMDY--IVSTFY-----NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD----~~~~~~L~~~Le~~Gy--~V~~as-----s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+++|+.+. +.....+..+.+..+. .|.... +.++..+++.. .|++|+-.. .+ .-|+.+++.+
T Consensus 263 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E-~~~~~~lEAm 336 (416)
T 2x6q_A 263 VQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-RE-GFGLTVTEAM 336 (416)
T ss_dssp CEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SC-SSCHHHHHHH
T ss_pred eEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cC-CCccHHHHHH
Confidence 567777765 2334444444444332 233322 23455566655 477766433 23 4567788887
Q ss_pred C-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 87 K-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 87 r-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. .+|||+.. .....+.+..|..+|+.. +.++|.++|..++.
T Consensus 337 a~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 WKGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp HTTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred HcCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 6 89987642 234556677788899996 99999999888775
No 215
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=50.05 E-value=33 Score=34.56 Aligned_cols=103 Identities=18% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
|+++||.||.--..-...+...|... +++++ .++ +.+.+.+.... +++-..+ + --++++. .++-+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~~----~---~~~ll~~-~~~D~ 92 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----FGGEPVE----G---YPALLER-DDVDA 92 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----HCSEEEE----S---HHHHHTC-TTCSE
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----cCCCCcC----C---HHHHhcC-CCCCE
Confidence 44689999998766553344444444 78876 444 33444333333 2222211 1 1123221 14555
Q ss_pred EEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 92 IITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 92 IvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
|+++... -.+.+..|+++|..=|+-||+ +.++..+.++
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~ 134 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFA 134 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 5554433 356788999999999999997 4566665444
No 216
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=49.66 E-value=1.3e+02 Score=32.16 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=60.7
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CCH
Q 009017 18 LRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DGS 79 (546)
Q Consensus 18 ~rILIVD----DD~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----------~dG 79 (546)
..++++| ......+.++.+-+.. +..|. .+.+.++|..+... ..|.|++.+. ++. ...
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCCH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCccH
Confidence 4466665 3334445555554444 44444 46788888776665 5788887431 110 112
Q ss_pred HHHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
++++..+ + ++|||.-.+-.+...+.+++.+||+....=
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 3444333 2 699999888889999999999999988764
No 217
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=49.31 E-value=42 Score=28.85 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=49.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh--CCCcEEEEe
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITS 95 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L--r~iPIIvLS 95 (546)
.+|+|+.-.. +...+...|.+.|+.|+.++.-.+.++.+.. ....++..|... .++++.. .+.-+|+++
T Consensus 8 ~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~------~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRE--RGVRAVLGNAAN------EEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEESCTTS------HHHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--cCCCEEECCCCC------HHHHHhcCcccCCEEEEE
Confidence 5799998754 6677888888889999877776777777776 456666666432 3455554 356666665
Q ss_pred cCCCh
Q 009017 96 NIHCL 100 (546)
Q Consensus 96 s~~d~ 100 (546)
...+.
T Consensus 79 ~~~~~ 83 (140)
T 3fwz_A 79 IPNGY 83 (140)
T ss_dssp CSCHH
T ss_pred CCChH
Confidence 54443
No 218
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=49.24 E-value=1.2e+02 Score=31.03 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=36.4
Q ss_pred eeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 64 pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
-|+||.+- .|+. ++... .+|+|++-...+... .++.| ..++..+ +.++|..++..++.
T Consensus 302 ad~vv~~S------Gg~~-~EA~a~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 302 SYLVFTDS------GGVQ-EEAPGMGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp EEEEEECC------HHHH-HHGGGTTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred cCEEEECC------ccHH-HHHHHhCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 45666542 2433 44443 899997733333333 35677 5677765 89999999988774
No 219
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=49.12 E-value=32 Score=33.98 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=21.7
Q ss_pred CCCCCCEEEEEeCCH--------HHHHHHHHHHhhCCCEEEEE
Q 009017 13 DFPKGLRVLLLDQDS--------SAAAELKFKLEAMDYIVSTF 47 (546)
Q Consensus 13 ~m~~~~rILIVDDD~--------~~~~~L~~~Le~~Gy~V~~a 47 (546)
.+.++||||+|.... .....+...|.+.||+|..+
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344567999998641 34556777788889998743
No 220
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=48.84 E-value=79 Score=32.63 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC---------C--CCCCHHHHHHHhC------C
Q 009017 29 AAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT---------S--NTDGSFKFLETAK------D 88 (546)
Q Consensus 29 ~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~m---------p--~~~dGlellr~Lr------~ 88 (546)
..+.++.+-+.. +..|. .+.+.++|..+... ..|.|++...- . + ...++.+..++ +
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCC-CCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCC-cchHHHHHHHHHHHhhcC
Confidence 344443333344 56655 46777777666544 58988883210 0 1 12344443332 6
Q ss_pred CcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 89 iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+|||...+-.+...+.+++.+||+.+..
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 8999888888899999999999998876
No 221
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=48.60 E-value=16 Score=33.32 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCCCCEEEEEeCCH-----H-HHHHHHHHHhhCCCEEEE---E---------C---CH----HHHHHHhhcCCCCeeEEE
Q 009017 14 FPKGLRVLLLDQDS-----S-AAAELKFKLEAMDYIVST---F---------Y---NE----NEALSAFSDKPENFHVAI 68 (546)
Q Consensus 14 m~~~~rILIVDDD~-----~-~~~~L~~~Le~~Gy~V~~---a---------s---s~----~eALe~L~~~~~~pDLVI 68 (546)
+.++++|.|...-- . ..+.+...|++.| .|.. + . +. ..-++.+.. -|+||
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vv 82 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVV 82 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEE
Confidence 34467898884332 1 4577888898888 7631 0 0 11 122344554 58999
Q ss_pred EecCCCCCCCHHHHHHHh-CCCcEEEEecCCC---hHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 69 VEVTTSNTDGSFKFLETA-KDLPTIITSNIHC---LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 69 lDl~mp~~~dGlellr~L-r~iPIIvLSs~~d---~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
.++.-++...++|+--.. ...|||++....+ ...+..+...+ ..|-...++.++|...|...++.
T Consensus 83 a~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 83 AEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp EECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHh
Confidence 988633311234544333 3899999876542 11222222211 22444445888888888777653
No 222
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=48.21 E-value=67 Score=31.92 Aligned_cols=105 Identities=11% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
+++|.||.--..-...+..+.+. .+++++ .++...+..+.+... ..++.... .+--++++. .++-+|++
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~-~g~~~~~~-------~~~~~ll~~-~~~D~V~i 72 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ-YQLNATVY-------PNDDSLLAD-ENVDAVLV 72 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH-TTCCCEEE-------SSHHHHHHC-TTCCEEEE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCCeee-------CCHHHHhcC-CCCCEEEE
Confidence 47899998876555555544423 478866 455444433433320 22111121 122234332 13455555
Q ss_pred ecC--CChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 95 SNI--HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 95 Ss~--~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
+.. .-.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 73 ~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~ 112 (344)
T 3mz0_A 73 TSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEE 112 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHH
Confidence 443 34567889999999999999964 5666554443
No 223
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=48.17 E-value=58 Score=32.82 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-...+ ..|... +++++ .++...+..+.... +++-. - .+--+++.. .++-+|+
T Consensus 4 ~~~~vgiiG~G~~g~~~~-~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~------~-~~~~~ll~~-~~~D~V~ 70 (359)
T 3e18_A 4 KKYQLVIVGYGGMGSYHV-TLASAADNLEVHGVFDILAEKREAAAQ----KGLKI------Y-ESYEAVLAD-EKVDAVL 70 (359)
T ss_dssp CCEEEEEECCSHHHHHHH-HHHHTSTTEEEEEEECSSHHHHHHHHT----TTCCB------C-SCHHHHHHC-TTCCEEE
T ss_pred CcCcEEEECcCHHHHHHH-HHHHhCCCcEEEEEEcCCHHHHHHHHh----cCCce------e-CCHHHHhcC-CCCCEEE
Confidence 458999999876555444 455544 78876 44544444444433 22211 0 122334432 2455555
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 71 i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (359)
T 3e18_A 71 IATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111 (359)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHH
Confidence 54433 3567889999999999999964 5666655443
No 224
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=48.08 E-value=49 Score=31.88 Aligned_cols=51 Identities=4% Similarity=0.024 Sum_probs=34.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+++|||..-...+...|...|.+.|++|..+........ +. .+.++..|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~----~~~~~~~Dl~ 52 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN----DYEYRVSDYT 52 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------CCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC----ceEEEEcccc
Confidence 468999999999999999999888999875443222222 22 2456666654
No 225
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.01 E-value=33 Score=30.81 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh--CCCEEEEECC--HHHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA--MDYIVSTFYN--ENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~--~Gy~V~~ass--~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+.+|++||-|+.. .+..++.. .++.+..+.. ..++++.+.. .||+||+|.-
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDLA---DYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHTT---TSSEEEEECC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhcC---CCCEEEEECC
Confidence 5689999988643 34444443 3567766554 2234444443 5999999974
No 226
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=47.80 E-value=7.3 Score=36.10 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|+|||........+.+.|++.|+.+..+...+..++.+.. ..+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 9999977776677889999999987766543212333332 24787777
No 227
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=47.78 E-value=65 Score=31.79 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
+++|.||.--..-.. +...|.. .+++++ .++...+..+.+.. .+.+- . .+--++++. .++-+|++
T Consensus 3 ~~~vgiiG~G~~g~~-~~~~l~~~~~~~l~av~d~~~~~~~~~~~---~~~~~-~-------~~~~~~l~~-~~~D~V~i 69 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKV-HAKAVSGNADARLVAVADAFPAAAEAIAG---AYGCE-V-------RTIDAIEAA-ADIDAVVI 69 (331)
T ss_dssp CEEEEEECCSHHHHH-HHHHHHHCTTEEEEEEECSSHHHHHHHHH---HTTCE-E-------CCHHHHHHC-TTCCEEEE
T ss_pred ceEEEEECCCHHHHH-HHHHHhhCCCcEEEEEECCCHHHHHHHHH---HhCCC-c-------CCHHHHhcC-CCCCEEEE
Confidence 579999988665444 4444444 478876 45544444343333 12221 1 123344432 14455555
Q ss_pred ecC--CChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 95 SNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 95 Ss~--~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+.. .-.+.+..|+++|..=|+-||+ +.++....++
T Consensus 70 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~ 108 (331)
T 4hkt_A 70 CTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLK 108 (331)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred eCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHH
Confidence 443 3456788999999999999995 4566655444
No 228
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=47.73 E-value=30 Score=32.89 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=40.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-------s~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
|+|||..-...+...+...|.+.|++|..+. +.+...+.+.. ..+|+||--...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a~~ 66 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCAAY 66 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECCcc
Confidence 5899999999999999999988899988654 34444445554 358988865543
No 229
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=47.72 E-value=18 Score=36.28 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=42.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
.-++.+||-++.....|++.++..+-..+...++.+++..+......+|+|++|---
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 358999999999999999888764323346678888888775532469999999633
No 230
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=47.70 E-value=29 Score=33.95 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHhhcCCCCeeEEEEecCCCCC-CC--------------------HHHHHHHhC----CCcEEEEecCC------ChH
Q 009017 53 ALSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK----DLPTIITSNIH------CLS 101 (546)
Q Consensus 53 ALe~L~~~~~~pDLVIlDl~mp~~-~d--------------------Glellr~Lr----~iPIIvLSs~~------d~e 101 (546)
.++.+.+ ...|+|-+|+-..+. +| ++++++.+| ++||++|+-.. -..
T Consensus 36 ~~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~ 113 (268)
T 1qop_A 36 IIDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDA 113 (268)
T ss_dssp HHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHH
T ss_pred HHHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHH
Confidence 3344444 457888888744321 22 345566665 57998876322 246
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 102 TMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.+..+.++||+.++.-.+..+++...+
T Consensus 114 ~~~~~~~aGadgii~~d~~~e~~~~~~ 140 (268)
T 1qop_A 114 FYARCEQVGVDSVLVADVPVEESAPFR 140 (268)
T ss_dssp HHHHHHHHTCCEEEETTCCGGGCHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHH
Confidence 777899999999999877765554433
No 231
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=47.57 E-value=96 Score=26.13 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH---HHHHhCCCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFK---FLETAKDLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass-~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle---llr~Lr~iPII 92 (546)
+..|.++|.++...+.+. ..|+.+...+- -.+.++.+.- ...|+||+-..- + ..-+. .++.+....||
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~~d~vi~~~~~-~-~~n~~~~~~a~~~~~~~ii 100 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLDL--EGVSAVLITGSD-D-EFNLKILKALRSVSDVYAI 100 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSCC--TTCSEEEECCSC-H-HHHHHHHHHHHHHCCCCEE
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCCc--ccCCEEEEecCC-H-HHHHHHHHHHHHhCCceEE
Confidence 467999999987654443 35777654432 2344555433 468999886541 1 11122 23333445566
Q ss_pred EEecCCChHHHHHHHHcCCCEEEe
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+.+. +........++|++..+.
T Consensus 101 a~~~--~~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 101 VRVS--SPKKKEEFEEAGANLVVL 122 (141)
T ss_dssp EEES--CGGGHHHHHHTTCSEEEE
T ss_pred EEEc--ChhHHHHHHHcCCCEEEC
Confidence 5554 334445567889865554
No 232
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=47.32 E-value=59 Score=31.02 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCCCCeeEEEE-ecCCCCCCC--HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 50 ENEALSAFSDKPENFHVAIV-EVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVIl-Dl~mp~~~d--Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+..+.+.. ...+.|++ ++.-.+... .++++++++ ++|||+..+-.+.+.+.++++.||++++.=
T Consensus 158 ~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 4555555555 34665554 433211112 378888886 799999998888899999999999998765
No 233
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.28 E-value=61 Score=30.81 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=45.6
Q ss_pred CEEEEEeC---CHHH---HHHHHHHHhhCCCEEEEECC-----HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 009017 18 LRVLLLDQ---DSSA---AAELKFKLEAMDYIVSTFYN-----EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (546)
Q Consensus 18 ~rILIVDD---D~~~---~~~L~~~Le~~Gy~V~~ass-----~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlell 83 (546)
.+|.||-. ++.+ ...+.+.+++.||.+..+.. .+ ++++.+.. ..+|.||+-..... .....+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~ 79 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT--AFSKSL 79 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS--TTHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH--HHHHHH
Confidence 45555532 3333 34456666778999886652 22 45555555 56898887433222 124566
Q ss_pred HHhC--CCcEEEEecCC
Q 009017 84 ETAK--DLPTIITSNIH 98 (546)
Q Consensus 84 r~Lr--~iPIIvLSs~~ 98 (546)
+.++ .+|||++....
T Consensus 80 ~~~~~~giPvV~~~~~~ 96 (297)
T 3rot_A 80 QRANKLNIPVIAVDTRP 96 (297)
T ss_dssp HHHHHHTCCEEEESCCC
T ss_pred HHHHHCCCCEEEEcCCC
Confidence 6665 79999886543
No 234
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=47.25 E-value=1e+02 Score=28.93 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|.||+-..... ...+.++.++ .+|+|++...
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA--AGYDAIIFNPTDAD--GSIANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHCCCeEEEEecC
Confidence 345566777788999876543 22 34555555 57898887533222 1224556553 7999988653
No 235
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=47.17 E-value=27 Score=37.61 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred CCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 009017 303 SGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 359 (546)
Q Consensus 303 ~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~ 359 (546)
.+...+||.+=|..|++||.+-|-| =+.|-+.++ .=|..+|++|.++||...
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~Vg--TKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIG--NKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhC--CCCHHHHHHHHHHHHHHh
Confidence 3456799999999999999999965 456777755 459999999999998653
No 236
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=47.14 E-value=62 Score=29.06 Aligned_cols=69 Identities=4% Similarity=0.111 Sum_probs=45.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
|+|||..-...+...+...|.+.|++|..+....+.+..+.. ...++..|+.-++ . +.+..+-+|+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~D~~d~~---~----~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK---DINILQKDIFDLT---L----SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCS---SSEEEECCGGGCC---H----HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccC---CCeEEeccccChh---h----hhhcCCCEEEECC
Confidence 479999988889999999988889998855433333443332 3567777776444 2 4445555555443
No 237
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=47.08 E-value=75 Score=31.71 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-...+..+.+. .+++++ .++...+..+.+.. .+.+-.. .+--++++. .++-+|+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~---~~~~~~~-------~~~~~ll~~-~~~D~V~ 80 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE---RTGARGH-------ASLTDMLAQ-TDADIVI 80 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HHCCEEE-------SCHHHHHHH-CCCSEEE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH---HcCCcee-------CCHHHHhcC-CCCCEEE
Confidence 458999998876555555554444 478866 55544444444333 1332222 123344443 2455565
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..-|+-||+ +.++..+.++.
T Consensus 81 i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~ 121 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKA 121 (354)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHH
Confidence 55433 356788999999999999996 45666554443
No 238
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=46.76 E-value=47 Score=33.09 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=56.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
++||.||.--..-...+..+.+..+++++ .++...+..+.+... ....-+. .+--++++. .++-+|+++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~-~~~~~~~--------~~~~~ll~~-~~~D~V~i~ 71 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK-LGVEKAY--------KDPHELIED-PNVDAVLVC 71 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH-HTCSEEE--------SSHHHHHHC-TTCCEEEEC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH-hCCCcee--------CCHHHHhcC-CCCCEEEEc
Confidence 47899998866544444433333477776 444333333333220 1111111 122234332 145555554
Q ss_pred cCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 96 NIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 96 s~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
... -.+.+..|+++|..=|+-||+ +.++....++.
T Consensus 72 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~ 110 (344)
T 3ezy_A 72 SSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEE 110 (344)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 433 356778899999999999994 56666654443
No 239
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=46.28 E-value=16 Score=34.91 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=44.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
+++|||..- ..+...|...|.+.|++|+.+....+....+.. ..+.++..|+. + .+ +.++-+|+.++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~--d-~~-------~~~~d~vi~~a 71 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--SGAEPLLWPGE--E-PS-------LDGVTHLLIST 71 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--TTEEEEESSSS--C-CC-------CTTCCEEEECC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--CCCeEEEeccc--c-cc-------cCCCCEEEECC
Confidence 479999997 888899999998889998855443343444444 35677777664 2 22 44555666544
No 240
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=46.27 E-value=84 Score=29.14 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=43.1
Q ss_pred CHHHHHHHhhcCCCCeeEEEE-ecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIV-EVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIl-Dl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+.++.+.+ ...|.|++ ++...+. .-.++.++.++ ++|||+..+-.+.+.+.+++++||+.++.
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 34454555544 34676654 4443220 11356666665 79999888877778889999999999875
No 241
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=45.93 E-value=1.5e+02 Score=28.17 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH------HH--HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE------NE--ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD 88 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~------~e--ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~ 88 (546)
+++|||..-...+...+...|.+.|++|..+... +. .+..+.. ....++..|+. +--.+.+.++.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~-----d~~~l~~~~~~ 76 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ--LGAKLIEASLD-----DHQRLVDALKQ 76 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT--TTCEEECCCSS-----CHHHHHHHHTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh--CCeEEEeCCCC-----CHHHHHHHHhC
Confidence 4689999988888888888888889998765432 22 2223333 34666766663 22234455566
Q ss_pred CcEEEEe
Q 009017 89 LPTIITS 95 (546)
Q Consensus 89 iPIIvLS 95 (546)
+-+|+..
T Consensus 77 ~d~vi~~ 83 (313)
T 1qyd_A 77 VDVVISA 83 (313)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 6666543
No 242
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.83 E-value=37 Score=34.68 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=59.6
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 19 RVLLLDQDSSAAAELKFKLE----AMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le----~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
.|||-|.+-.....+...++ ..++. .+.+.+.+++.+.+.. ..|+|.+|-.-++ +--+.++.++.-..|
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~~~~--~l~~av~~l~~~v~i 278 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNFSLE--MMREAVKINAGRAAL 278 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEE
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeE
Confidence 37777776444433333332 23332 4589999999988876 4799999963222 112233444444566
Q ss_pred EEecCCChHHHHHHHHcCCCEEEe
Q 009017 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 93 vLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..|+.-+.+.+.+..+.|+|.|-+
T Consensus 279 eaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 279 ENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp EEESSCCHHHHHHHHTTTCSEEEC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEE
Confidence 788888999999999999976643
No 243
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=45.49 E-value=22 Score=35.16 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCC-CC--------------------HHHHHHHhC---CCcEEEEecC------CChH
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK---DLPTIITSNI------HCLS 101 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~-~d--------------------Glellr~Lr---~iPIIvLSs~------~d~e 101 (546)
+.++.+.+ . .|+|.+++-..+. .| .+++++.+| ++|||+|+-. .-..
T Consensus 34 ~~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~ 110 (271)
T 1ujp_A 34 QAVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPER 110 (271)
T ss_dssp HHHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHH
Confidence 34455566 6 8999888644321 11 245666676 7899998522 1234
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 102 TMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.+..|.++|++++|.-.+..+++...+
T Consensus 111 f~~~~~~aG~dGviv~Dl~~ee~~~~~ 137 (271)
T 1ujp_A 111 FFGLFKQAGATGVILPDLPPDEDPGLV 137 (271)
T ss_dssp HHHHHHHHTCCEEECTTCCGGGCHHHH
T ss_pred HHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 567788999999999877665555443
No 244
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=45.19 E-value=1.2e+02 Score=32.19 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC----------C---CCHHHHHHHhC---CCcE
Q 009017 31 AELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN----------T---DGSFKFLETAK---DLPT 91 (546)
Q Consensus 31 ~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~----------~---~dGlellr~Lr---~iPI 91 (546)
+.++.+-+.. ++.|. .+.+.++|..+... ..|.|++...-.. . ...+.+++.++ ++||
T Consensus 285 ~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipV 361 (514)
T 1jcn_A 285 AMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPI 361 (514)
T ss_dssp HHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCE
T ss_pred HHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCE
Confidence 4444444443 55554 46777777766655 4687777432110 0 11245555554 6999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEe
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
|...+-.+...+.+++.+||+....
T Consensus 362 ia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 362 IADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCeeeE
Confidence 9888888899999999999988755
No 245
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=45.12 E-value=49 Score=33.01 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=59.0
Q ss_pred EEEEeCCHHHHH----HHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC---Cc
Q 009017 20 VLLLDQDSSAAA----ELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD---LP 90 (546)
Q Consensus 20 ILIVDDD~~~~~----~L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~---iP 90 (546)
+||-|++-.... .++..-+..+ -..+.+.+.+++.+.+.. ..|+|++|-.-++ +-.+.++.++. -.
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~--~~~~~v~~l~~~~~~v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW--QTQTAVQRRDSRAPTV 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH--HHHHHHHHHHHHCTTC
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCCe
Confidence 677776644322 2333222233 234588899999999886 4799999974333 22334444442 34
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.|..|+--+.+.+.+..+.|++.|.+
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 56678878888899999999877653
No 246
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=44.85 E-value=47 Score=33.13 Aligned_cols=102 Identities=9% Similarity=0.055 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
++|+++||.||.--..-+......|.. .+++++.+.+... ..+++-.. .+--++++...++-+
T Consensus 21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~---------~~~g~~~~-------~~~~~ll~~~~~vD~ 84 (330)
T 4ew6_A 21 QSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG---------TVEGVNSY-------TTIEAMLDAEPSIDA 84 (330)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC---------CCTTSEEE-------SSHHHHHHHCTTCCE
T ss_pred ccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh---------hhcCCCcc-------CCHHHHHhCCCCCCE
Confidence 445678999999876655333444444 4778764433221 11222111 123345554234555
Q ss_pred EEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 92 IITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 92 IvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
|+++... -.+.+.+|+++|..=|+-||+ +.++..+.++.
T Consensus 85 V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~ 127 (330)
T 4ew6_A 85 VSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEAL 127 (330)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHH
Confidence 5555432 356788999999999999996 56666665443
No 247
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=44.33 E-value=79 Score=31.46 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EECCHHHHHHHhhcCCCCeeE-EEEecCCCCCCCHHHHHHHhCCC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHV-AIVEVTTSNTDGSFKFLETAKDL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~-~ass~~eALe~L~~~~~~pDL-VIlDl~mp~~~dGlellr~Lr~i 89 (546)
..++++|.||.--..........|... +++++ .++...+..+.+.+ .+.+ -+. .+--++++. .++
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~---~~~~~~~~-------~~~~~ll~~-~~v 83 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK---MVGNPAVF-------DSYEELLES-GLV 83 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH---HHSSCEEE-------SCHHHHHHS-SCC
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHH---HhCCCccc-------CCHHHHhcC-CCC
Confidence 345689999998744444444455543 67765 55543443333332 1221 111 122234332 245
Q ss_pred cEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 90 PTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 90 PIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
-+|+++... -.+.+..|+++|..=|+-||+ +.++..+.++.
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 128 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVEL 128 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 555555433 357888999999999999997 56666655443
No 248
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=44.13 E-value=1.6e+02 Score=29.09 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=49.7
Q ss_pred CccCcCCCCCCEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHH----HhhcCCCCeeEEEEecCCCCCCCHHH
Q 009017 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALS----AFSDKPENFHVAIVEVTTSNTDGSFK 81 (546)
Q Consensus 8 ~~~~~~m~~~~rILIVDDD~~~~~~L~~~Le~~-Gy-~V~~ass~~eALe----~L~~~~~~pDLVIlDl~mp~~~dGle 81 (546)
++....|+.+++|||..-...+...+...|.+. |+ +|+.+....+... .+.. ....++..|+. +.-.
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~v~~~~~Dl~-----d~~~ 84 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND--PRMRFFIGDVR-----DLER 84 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC--TTEEEEECCTT-----CHHH
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC--CCEEEEECCCC-----CHHH
Confidence 344556667789999999999998888888877 87 8775544333222 2222 35667777763 2223
Q ss_pred HHHHhCCCcEEEEec
Q 009017 82 FLETAKDLPTIITSN 96 (546)
Q Consensus 82 llr~Lr~iPIIvLSs 96 (546)
+.+.+..+-+|+-.+
T Consensus 85 l~~~~~~~D~Vih~A 99 (344)
T 2gn4_A 85 LNYALEGVDICIHAA 99 (344)
T ss_dssp HHHHTTTCSEEEECC
T ss_pred HHHHHhcCCEEEECC
Confidence 444455666666544
No 249
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=43.69 E-value=1.6e+02 Score=28.27 Aligned_cols=92 Identities=10% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH---hC--CCcEEEEecCCChHHHHH
Q 009017 33 LKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET---AK--DLPTIITSNIHCLSTMMK 105 (546)
Q Consensus 33 L~~~Le~~G--y~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~---Lr--~iPIIvLSs~~d~e~i~~ 105 (546)
+++.|.... +.+..+-+..+.++.+.. ..+|.|++|++-.. .+--++... +. ..++++=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p-~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAP-NDISTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSS-CCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence 555565432 233333345555666666 57999999986543 333222222 22 466777777778888999
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHH
Q 009017 106 CIALGAVEFLR-KPLSEDKLRNL 127 (546)
Q Consensus 106 Al~aGAdDYL~-KP~~~eeL~~~ 127 (546)
+++.|++.++. |=-+.+++...
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~ 109 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELA 109 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHH
T ss_pred HHhcCCceeeecCcCCHHHHHHH
Confidence 99999988654 33456777544
No 250
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=43.51 E-value=1.3e+02 Score=30.01 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=46.4
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecC-------------------------CCC-C--------CCHHHHHHHhC--
Q 009017 44 VSTFYNENEALSAFSDKPENFHVAIVEVT-------------------------TSN-T--------DGSFKFLETAK-- 87 (546)
Q Consensus 44 V~~ass~~eALe~L~~~~~~pDLVIlDl~-------------------------mp~-~--------~dGlellr~Lr-- 87 (546)
++.+.+.+|++..+.. ..|+|.+... |+. . ...++++++++
T Consensus 129 vv~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 3367788888777765 3677777632 111 0 01245566665
Q ss_pred -CCcEEE--EecCCChHHHHHHHHcCCCEEEeC
Q 009017 88 -DLPTII--TSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 88 -~iPIIv--LSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+|||+ ..+-.+.+.+.+++++||+.++.=
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVG 238 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVG 238 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEES
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEh
Confidence 578774 445558899999999999999863
No 251
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=43.50 E-value=2.4e+02 Score=27.86 Aligned_cols=85 Identities=12% Similarity=-0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CCHHHHHHH----hC-CCcEEEEecCCCh
Q 009017 29 AAAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNT--DGSFKFLET----AK-DLPTIITSNIHCL 100 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~--~dGlellr~----Lr-~iPIIvLSs~~d~ 100 (546)
....+..+-.+.|.++ +.+.+.+|+-..+.. ..++|=++-.--.. .| ++...+ +. ++.+|.-|+-.+.
T Consensus 141 ~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vd-l~~t~~L~~~ip~~~~~VsESGI~t~ 216 (258)
T 4a29_A 141 ELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEIN-KENQRKLISMIPSNVVKVAKLGISER 216 (258)
T ss_dssp HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBC-HHHHHHHHTTSCTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccC-HHHHHHHHhhCCCCCEEEEcCCCCCH
Confidence 3445556666789885 589999998777765 45766554321110 22 233333 33 5666667888899
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+++.+..++|++.||+-
T Consensus 217 ~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 217 NEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999999999985
No 252
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=43.38 E-value=1.2e+02 Score=29.59 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-...+...|.. .+++++ .++...+..+.+.. .+.+- . .+.++.+ ..++-+|+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~~-------~-~~~~~~l--~~~~D~V~ 70 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE---SWRIP-------Y-ADSLSSL--AASCDAVF 70 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH---HHTCC-------B-CSSHHHH--HTTCSEEE
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---HcCCC-------c-cCcHHHh--hcCCCEEE
Confidence 357999998865444324444443 477766 44432222222222 11111 1 1123333 23566666
Q ss_pred EecCCC--hHHHHHHHHcCCCEEEeCCCC--HHHHHHH
Q 009017 94 TSNIHC--LSTMMKCIALGAVEFLRKPLS--EDKLRNL 127 (546)
Q Consensus 94 LSs~~d--~e~i~~Al~aGAdDYL~KP~~--~eeL~~~ 127 (546)
++.... .+.+..|+++|..-|+-||+. .++....
T Consensus 71 i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l 108 (319)
T 1tlt_A 71 VHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERL 108 (319)
T ss_dssp ECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHH
Confidence 665444 467888999999889999964 5555443
No 253
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=43.24 E-value=61 Score=32.98 Aligned_cols=103 Identities=9% Similarity=0.176 Sum_probs=56.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
++||.||.--..........|.. .+++++ .++...+..+.+.. .+++-.. .+--++++. .++-+|++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~g~~~~-------~~~~ell~~-~~vD~V~i 70 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGK---EYGIPVF-------ATLAEMMQH-VQMDAVYI 70 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHH---HHTCCEE-------SSHHHHHHH-SCCSEEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHH---HcCCCeE-------CCHHHHHcC-CCCCEEEE
Confidence 47888988874444444444444 467766 44433333333322 1222111 122344443 24555555
Q ss_pred ecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 95 SNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 95 Ss~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
+... -.+.+..|+++|..=|+-||+. .++....++.
T Consensus 71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~ 110 (387)
T 3moi_A 71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEA 110 (387)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHH
Confidence 4433 3567889999999999999965 5666654443
No 254
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.81 E-value=1.5e+02 Score=24.98 Aligned_cols=115 Identities=12% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh---hcCCCCee-EEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF---SDKPENFH-VAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L---~~~~~~pD-LVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
.+-|||-..+......+..-.+..||.|.-+.+.++.-..+ .+. ..|. ++|+.-+-.-...-++++..+..-.++
T Consensus 2 kililintnndelikkikkevenqgyqvrdvndsdelkkemkklaee-knfekiliisndkqllkemlelisklgykvfl 80 (134)
T 2lci_A 2 KILILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEE-KNFEKILIISNDKQLLKEMLELISKLGYKVFL 80 (134)
T ss_dssp CCEEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHHC-CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHhh-cCcceEEEEcCcHHHHHHHHHHHHHhCceeEE
Confidence 35677778888888888888888999999999988765433 222 3454 344321100000113333333333344
Q ss_pred EEecCCChHHHH---HHHHcCCCEE-EeCCCCHHHHHHHHHHHHHHH
Q 009017 93 ITSNIHCLSTMM---KCIALGAVEF-LRKPLSEDKLRNLWQHVVHKA 135 (546)
Q Consensus 93 vLSs~~d~e~i~---~Al~aGAdDY-L~KP~~~eeL~~~I~~vlrr~ 135 (546)
++-. .+..... +-++. .+| +.|-.+.++-+..++..++++
T Consensus 81 llqd-qdeneleefkrkies--qgyevrkvtddeealkivrefmqka 124 (134)
T 2lci_A 81 LLQD-QDENELEEFKRKIES--QGYEVRKVTDDEEALKIVREFMQKA 124 (134)
T ss_dssp EEEC-SCHHHHHHHHHHHHT--TTCEEEEECCHHHHHHHHHHHHHHH
T ss_pred Eeec-CchhHHHHHHHHHHh--CCeeeeecCChHHHHHHHHHHHHhc
Confidence 4443 4443333 23333 334 445556677777777666554
No 255
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=42.66 E-value=78 Score=29.70 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhh-----cCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFS-----DKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~-----~~~~~pDLVIlDl~ 72 (546)
..+|..||-++...+..++.++..|+. |. ...+..+.+..+. . ..||+|++|..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~--~~fD~I~~d~~ 156 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE--GSYDFGFVDAD 156 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT--TCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC--CCcCEEEECCc
Confidence 468999999999999999999888763 44 6677877776653 3 57999999964
No 256
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=42.39 E-value=53 Score=32.81 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCEEEEEeCCH----HHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQDS----SAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDDD~----~~~~~L~~~Le~~Gy~V~~ass 49 (546)
+||||++-... .-...|...|.+.|++|..+..
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 46999886431 1224567778888999886654
No 257
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=42.38 E-value=56 Score=35.97 Aligned_cols=96 Identities=8% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC-
Q 009017 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (546)
Q Consensus 17 ~~rILIV----DDD~~~~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr- 87 (546)
..+||+. |-+..-...+..+|+..||+|+.. -..++.++.+.. ..+|+|.+...+...+.. -++++.|+
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 566677788888999999999743 467888888888 789999998876531111 23444554
Q ss_pred ---CCcEEEEecCCChHHHHHHHHc-----CCCEEEe
Q 009017 88 ---DLPTIITSNIHCLSTMMKCIAL-----GAVEFLR 116 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~i~~Al~a-----GAdDYL~ 116 (546)
+++|++--.....+... .+. ||+.|..
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQ 210 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECC
T ss_pred cCCCCeEEEEccccchhhhh--hhhhhcccCCeEEEC
Confidence 57776544444444321 123 8877764
No 258
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=41.98 E-value=63 Score=34.26 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCCCEEEEEeC----CHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCe-eEEEEecCCCCCCCHHHHHHHhC
Q 009017 15 PKGLRVLLLDQ----DSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENF-HVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 15 ~~~~rILIVDD----D~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~p-DLVIlDl~mp~~~dGlellr~Lr 87 (546)
|++++|.||.- -..-...+..+... .+++++ +++...+..+.+... ... ++.+. .+--++++. .
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~~~~-------~d~~ell~~-~ 107 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ-LQLKHATGF-------DSLESFAQY-K 107 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH-TTCTTCEEE-------SCHHHHHHC-T
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH-cCCCcceee-------CCHHHHhcC-C
Confidence 45689999988 43333334444333 478866 555434433333320 111 11111 122233332 2
Q ss_pred CCcEEEEecCC--ChHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHH
Q 009017 88 DLPTIITSNIH--CLSTMMKCIALG------AVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 88 ~iPIIvLSs~~--d~e~i~~Al~aG------AdDYL~KP~~--~eeL~~~I~ 129 (546)
++-+|+++... -.+.+..|+++| ..=|+-||+. .++..+.++
T Consensus 108 ~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~ 159 (479)
T 2nvw_A 108 DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYS 159 (479)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHH
Confidence 45566665533 356788899999 7889999975 555554433
No 259
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=41.60 E-value=37 Score=32.78 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 79 SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 79 Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++++++++ ++||++-.+-.+.+.+.+++++||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 445777776 799998888888999999999999999864
No 260
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=41.12 E-value=55 Score=31.24 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=46.2
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeCC
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP 118 (546)
+..+..+.+.+ ...| |.|.|....+. ..-+++++.++ .+|||+.....+.+.+.++++.||+..+.=-
T Consensus 31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 45555555554 3344 44566553320 11277888886 6999998877888889999999999988754
No 261
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=41.10 E-value=64 Score=31.41 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+++++++ ++||++=.+-.+.+.+.+++.+||+.++.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 56777776 688877666666899999999999999975
No 262
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=41.09 E-value=1.3e+02 Score=34.28 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=72.1
Q ss_pred CEEEEEeCCH----------HHHHHHHHHHhhCCC--EEEEEC---C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCH
Q 009017 18 LRVLLLDQDS----------SAAAELKFKLEAMDY--IVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGS 79 (546)
Q Consensus 18 ~rILIVDDD~----------~~~~~L~~~Le~~Gy--~V~~as---s---~~eALe~L~~~~~~pDLVIlDl~mp~~~dG 79 (546)
.+++||.+.+ .....+..+.++.|. .|.... + .++....+.. ..|++++-.. .+ .-|
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~E-gfg 678 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YE-AFG 678 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CB-SSC
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-cc-Ccc
Confidence 5678887766 255667777777664 244433 2 2556666653 2477776433 34 467
Q ss_pred HHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 80 FKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 80 lellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+.+++.+. .+|||+. .... ..+.+..|..+++..|.+.++|.++|..++.
T Consensus 679 lvllEAMA~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 679 LTVVEAMTCGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHHHTTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 88888886 8998864 3333 3445677889999999999999999977763
No 263
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=40.88 E-value=1.1e+02 Score=28.90 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
.+...+.+.+++.||.+..+.. ..+.++.+.. ..+|.||+-..... + +.++.+. .+|+|++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN--D--PRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT--C--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC--c--HHHHHHHhcCCCEEEECCc
Confidence 4556677778889999876542 2356777766 67898887543222 1 3455553 7999988653
No 264
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=40.61 E-value=65 Score=32.04 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=67.1
Q ss_pred CEEEEEeCCHH-----HHHHHHHHHhhCCCE--------EEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH
Q 009017 18 LRVLLLDQDSS-----AAAELKFKLEAMDYI--------VSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (546)
Q Consensus 18 ~rILIVDDD~~-----~~~~L~~~Le~~Gy~--------V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle 81 (546)
.+++|+.+.+. ....+.+++++.|.. ++.+ -+.++..+++.. .|++|+-.. .+ .-|+.
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E-~~~~~ 289 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GE-GFGLC 289 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cC-CCCcH
Confidence 46666654432 235555655555543 2322 235677777766 577777433 34 45788
Q ss_pred HHHHhC-CCcEEEEecCCChHHHHHHHHcCCC---------------EE--EeCCCCHHHHHHHHHHHHH
Q 009017 82 FLETAK-DLPTIITSNIHCLSTMMKCIALGAV---------------EF--LRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 82 llr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAd---------------DY--L~KP~~~eeL~~~I~~vlr 133 (546)
+++.+. .+|||... .....+.+..|.. ++ +..+.+.++|.++| .++.
T Consensus 290 ~lEAma~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAVLGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHTTTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHHcCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 888887 89988632 2345556666666 77 88999999999999 7764
No 265
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=40.50 E-value=69 Score=24.67 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=40.0
Q ss_pred cCCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHH
Q 009017 301 KASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 355 (546)
Q Consensus 301 ~~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqky 355 (546)
+.++.+-.||+|=-+..+++|++.|..+ =+.|.+.|+..|=|-.+++.+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSC--HHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCc--HHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4556677999999999999999999542 3677888865577887777654443
No 266
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=40.45 E-value=95 Score=32.22 Aligned_cols=113 Identities=9% Similarity=0.041 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhh----cCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFS----DKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 13 ~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~----~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
.+|++++|.||.--..-...+..+....+++++ .++...+..+.+. .. ..++.-+.+- .. .+--++++. .
T Consensus 16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~-g~~~~~~~~~--~~-~~~~~ll~~-~ 90 (444)
T 2ixa_A 16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKN-GKKPAKVFGN--GN-DDYKNMLKD-K 90 (444)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHT-TCCCCEEECS--ST-TTHHHHTTC-T
T ss_pred CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhc-CCCCCceecc--CC-CCHHHHhcC-C
Confidence 345578999998776555555444433478876 4543333333221 10 1112222221 11 122222221 1
Q ss_pred CCcEEEEecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 88 DLPTIITSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 88 ~iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
++-+|+++... -.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 91 ~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~ 137 (444)
T 2ixa_A 91 NIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKV 137 (444)
T ss_dssp TCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHH
Confidence 45566665433 3577889999999999999975 6666555443
No 267
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=40.33 E-value=1.3e+02 Score=29.29 Aligned_cols=92 Identities=11% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC-H----H--HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN-E----N--EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass-~----~--eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-- 87 (546)
+++|||..-...+...|...|.+.|++|..+.. . . +.+..+.. ....++..|+. + --++.+.++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~--~~v~~~~~Dl~--d---~~~l~~~~~~~ 82 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALED--KGAIIVYGLIN--E---QEAMEKILKEH 82 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHH--TTCEEEECCTT--C---HHHHHHHHHHT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHh--CCcEEEEeecC--C---HHHHHHHHhhC
Confidence 468999999999999999888888998875432 1 1 22333444 45677777763 2 233444455
Q ss_pred CCcEEEEecCC-----ChHHHHHHHHcC-CCEEE
Q 009017 88 DLPTIITSNIH-----CLSTMMKCIALG-AVEFL 115 (546)
Q Consensus 88 ~iPIIvLSs~~-----d~e~i~~Al~aG-AdDYL 115 (546)
.+-+|+..... ....+..|.+.| +.-|+
T Consensus 83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 83 EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp TCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence 55555554321 123334444566 55555
No 268
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=40.09 E-value=44 Score=32.57 Aligned_cols=82 Identities=12% Similarity=-0.082 Sum_probs=53.6
Q ss_pred HHHHHHHh---hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-----CCCCCHH-HHHHHhC----CCcEEEEec
Q 009017 31 AELKFKLE---AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-----SNTDGSF-KFLETAK----DLPTIITSN 96 (546)
Q Consensus 31 ~~L~~~Le---~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~m-----p~~~dGl-ellr~Lr----~iPIIvLSs 96 (546)
..+++++. ..|..+. .+.+.+|+...+.. ..|+|=+.... ++ .+.+ ++++.+. ++++|..++
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~d-l~~~~~L~~~i~~~~~~~~vIAegG 216 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHIN-LETAPRLGRLARKRGFGGVLVAESG 216 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBC-TTHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCC-HHHHHHHHHhCccccCCCeEEEEcC
Confidence 44555554 5688854 78888887766655 34666553321 12 2222 2344443 578888888
Q ss_pred CCChHHHHHHHHcCCCEEEeC
Q 009017 97 IHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 97 ~~d~e~i~~Al~aGAdDYL~K 117 (546)
-.+.+.+.++.+ ||+.+++=
T Consensus 217 I~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 217 YSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp CCSHHHHHTTTT-TCSEEEEC
T ss_pred CCCHHHHHHHHc-CCCEEEEe
Confidence 888999999999 99999864
No 269
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=40.06 E-value=1.1e+02 Score=28.93 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCEEEE-EC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 30 AAELKFKLEAMDYIVST-FY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~-as---s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
...+.+.+++.||.+.. +. +.+ +.++.+.. ..+|.||+-..... ...+.++.+. .+|+|++....
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA--KNPAGIAISAIDPV--ELTDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH--HCCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH--hCCCEEEEcCCCHH--HHHHHHHHHHHCCCcEEEECCCC
Confidence 35566667778999876 33 222 34555555 56898887433222 2245666664 79999886543
No 270
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=39.90 E-value=46 Score=32.83 Aligned_cols=100 Identities=7% Similarity=0.013 Sum_probs=62.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHh-----hCCCEEEEECCH--------HHHHHHh----hcCCCCeeEEEEecCCCCCCCH
Q 009017 17 GLRVLLLDQDSSAAAELKFKLE-----AMDYIVSTFYNE--------NEALSAF----SDKPENFHVAIVEVTTSNTDGS 79 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le-----~~Gy~V~~ass~--------~eALe~L----~~~~~~pDLVIlDl~mp~~~dG 79 (546)
+.+|-||---..-...+.++|. +.+..+.++.++ +++...+ .. ..||+||+--=.+. ..|
T Consensus 3 vvKiGiiKlGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~--~~pDfvI~isPN~a-~PG 79 (283)
T 1qv9_A 3 VAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAED--FEPDFIVYGGPNPA-APG 79 (283)
T ss_dssp CEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHH--HCCSEEEEECSCTT-SHH
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhh--cCCCEEEEECCCCC-CCC
Confidence 4566666544433344444443 235677777654 3444444 45 57899888655555 567
Q ss_pred HHHHHHh---CCCcEEEEecCCChHHHHHHHHcCCCEEEeCCCC
Q 009017 80 FKFLETA---KDLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (546)
Q Consensus 80 lellr~L---r~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~ 120 (546)
-.-.|.+ +++|.|+++...... ..++++..-.+||.-+.+
T Consensus 80 P~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 80 PSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp HHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred chHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Confidence 6666654 489999999876555 557787777888766543
No 271
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=39.90 E-value=34 Score=38.15 Aligned_cols=96 Identities=8% Similarity=-0.122 Sum_probs=61.5
Q ss_pred HHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC--CCcEEEEecCCChH--
Q 009017 30 AAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSNIHCLS-- 101 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr--~iPIIvLSs~~d~e-- 101 (546)
...+..+|+..||+|+.. .+ +++++.+.+ ..+|+|.+...+...+. .-++++.|+ .+..|++.+.....
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~~~V~vgG~P~~d~~ 603 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGD 603 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCCCCeEEEeCCCCccch
Confidence 356777889999998742 45 888888877 67899988765432011 123555565 44456677743221
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009017 102 TMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~KP~~~eeL~~~I~ 129 (546)
......+ |+++|+.--.+..+++..+.
T Consensus 604 ~~~~~~~-G~D~~~~~g~~~~~~l~~l~ 630 (637)
T 1req_B 604 DAAEAEK-LIDGRLFMGMDVVDTLSSTL 630 (637)
T ss_dssp GHHHHHH-HCCCEECTTCCHHHHHHHHH
T ss_pred hhHHHHh-ccceEecCCcCHHHHHHHHH
Confidence 1234445 99999998888877766544
No 272
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=39.64 E-value=31 Score=31.83 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=33.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
.+|+|||=-.-....+...|++.|+++....+.++. .. +|.||+
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 479999966555667888999999999888876543 22 477776
No 273
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.48 E-value=1.6e+02 Score=24.21 Aligned_cols=92 Identities=9% Similarity=0.081 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 19 RVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~--Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
-+|||.-|..+...+.+.-... |--+.++.+..+..+.+..- -+ + .-|++++..
T Consensus 4 vllvistdtniissvqerakhnypgryirtatssqdirdiiksm-------------kd--n---------gkplvvfvn 59 (112)
T 2lnd_A 4 VLLVISTDTNIISSVQERAKHNYPGRYIRTATSSQDIRDIIKSM-------------KD--N---------GKPLVVFVN 59 (112)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHHH-------------TT--C---------CSCEEEEEC
T ss_pred EEEEEecCchHHHHHHHHhhcCCCCceeeeccchhhHHHHHHHH-------------Hh--c---------CCeEEEEec
Confidence 4567777877776666655432 44477888877766655430 00 0 124443333
Q ss_pred CCCh----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 97 IHCL----STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 97 ~~d~----e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
-... +...+|.+.|+..-++|..++++|..+++..+..
T Consensus 60 gasqndvnefqneakkegvsydvlkstdpeeltqrvreflkt 101 (112)
T 2lnd_A 60 GASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKT 101 (112)
T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHh
Confidence 3322 2344677889988899999999999998887754
No 274
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=39.30 E-value=1.3e+02 Score=28.45 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC-------HHH--HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN-------ENE--ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass-------~~e--ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
+++|||..-...+...+...|.+.|+.|..... .+. .+..+.. ....++..|+. + --.+.+.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~--~~v~~v~~D~~--d---~~~l~~~~~ 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA--SGANIVHGSID--D---HASLVEAVK 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHT--TTCEEECCCTT--C---HHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHh--CCCEEEEeccC--C---HHHHHHHHc
Confidence 467999999888888888888888998875443 111 2233334 35677777763 2 223444455
Q ss_pred CCcEEEEecCC-----ChHHHHHHHHcC-CCEEE
Q 009017 88 DLPTIITSNIH-----CLSTMMKCIALG-AVEFL 115 (546)
Q Consensus 88 ~iPIIvLSs~~-----d~e~i~~Al~aG-AdDYL 115 (546)
.+-+|+..... ....+..|.++| +.-|+
T Consensus 77 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 77 NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence 56666554321 223334445566 65565
No 275
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=39.27 E-value=3.1e+02 Score=27.43 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=61.5
Q ss_pred EEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC--
Q 009017 19 RVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG-- 78 (546)
Q Consensus 19 rILIVD----DD~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-----------~d-- 78 (546)
.++.++ +.....+.++.+-+.. +.-|. .+.+.++|..+... ..|.|++... ++. ..
T Consensus 122 ~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~ 197 (336)
T 1ypf_A 122 EYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGW 197 (336)
T ss_dssp SEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchh
Confidence 444554 3344555565555554 34444 36788888777766 4788888432 110 01
Q ss_pred HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 79 SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 79 Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.++++.+++ ++|||.-.+-.+..++.+++.+||+....
T Consensus 198 ~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 198 QLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp HHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 255555554 79999988888999999999999998765
No 276
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=39.16 E-value=75 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=25.2
Q ss_pred CEEEEEe------CCHHHHHHHHHHHhhCCCEEEEE----CCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLD------QDSSAAAELKFKLEAMDYIVSTF----YNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVD------DD~~~~~~L~~~Le~~Gy~V~~a----ss~~eALe~L~~~~~~pDLVIl 69 (546)
.+|++|+ |.......+.+.|++.|+++... .+.++..+.+.+ .|.|++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l 85 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV 85 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE
Confidence 4666664 22234455666666666665555 255554454444 345554
No 277
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=39.10 E-value=41 Score=30.77 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=34.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~---~eALe~L~~~~~~pDLVIl 69 (546)
++|+|||.-..+...+.+.|++.|+++..+... ++..+.+... ..+++||.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 379999976667788899999999988766544 4444544431 13455554
No 278
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=39.00 E-value=72 Score=31.83 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=60.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 19 RVLLLDQDSSAAAELKFKL----EAMDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~L----e~~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
-+||.||+-.+...+...+ +..+. . .+.+.+.+++.+.+.. ..|+|.+|-.-+. .--+.++.++ ++|
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~--~~k~av~~v~~~ip 242 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLE--ALREAVRRVGGRVP 242 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHH--HHHHHHHHHTTSSC
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCe
Confidence 3788888776543332222 23333 2 3478899999988876 4799999974333 1223445554 677
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+++ ++--+.+.+.+..+.|++.+-+
T Consensus 243 i~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 243 LEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred EEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 665 5556788999999999877654
No 279
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=39.00 E-value=1.1e+02 Score=28.34 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=46.4
Q ss_pred ECCHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 47 FYNENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 47 ass~~eALe~L~~~~~~pD-LVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
..+..+.++.+.+ ...| +.+.|...... ...+++++.++ ++|+++...-.+.+.+.+++++||+.+..-
T Consensus 32 ~~~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 32 VGDPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp EECHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred cccHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3466666677766 4577 44555443220 12356677775 789998877788888999999998887753
No 280
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=38.96 E-value=58 Score=31.15 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhCCCcEEEEecCC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAKDLPTIITSNIH 98 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr~iPIIvLSs~~ 98 (546)
.+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+--.... .. -++.+.. .+|+|++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~l~~--~iPvV~i~~~~ 104 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE--GRVDGVLLQRREDF-DDDMLAAVLE--GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS--CSSSEEEECCCTTC-CHHHHHHHHT--TSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecCCCC-cHHHHHHHhC--CCCEEEECCcC
Confidence 34566777778889998755422 346666766 67888877543323 22 2333333 89999886543
No 281
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=38.90 E-value=79 Score=31.87 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=46.4
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecCCChHHHHHHHHcCCCEE
Q 009017 44 VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEF 114 (546)
Q Consensus 44 V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~~d~e~i~~Al~aGAdDY 114 (546)
.+.+.+.+++.+.+.. ..|+|.+|-.-++ +--+.++.+..-..|..|+.-+.+.+.+..+.|+|.|
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn~~~~--~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDNFTLD--MMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEESCCHH--HHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3479999999888876 4899999963222 1122344444445566788888888888899999665
No 282
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=38.56 E-value=75 Score=29.83 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
...+.+.+++.||.+..+.. .+ +.++.+.. ..+|.||+...... .-.++++.+. .+|+|++....
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~ 99 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDV--YIGSAIEEAKKAGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTT--TTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHcCCCEEEecCCC
Confidence 45566667788999875543 22 45556666 57888887543222 2235666664 79999886543
No 283
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=38.56 E-value=1.5e+02 Score=27.56 Aligned_cols=64 Identities=6% Similarity=-0.027 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh---CCCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KDLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L---r~iPIIvLSs~ 97 (546)
.+...+...+++.||.+..+.. . .+.++.+.. ..+|.||+...... . +.++.+ ..+|+|++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~---~-~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRFLS---V-DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSSSC---H-HHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC---h-HHHHHHHhcCCCCEEEEccc
Confidence 3456677778888999876653 2 234555555 56887777533222 2 333333 47899988653
No 284
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=38.40 E-value=84 Score=29.60 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=45.9
Q ss_pred CCHHHHHHHhhcCCCCee-EEEEecCCCCCCC---HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 48 YNENEALSAFSDKPENFH-VAIVEVTTSNTDG---SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 48 ss~~eALe~L~~~~~~pD-LVIlDl~mp~~~d---Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+..+..+.+.. ...| +.+.|..... .. .+++++.++ ++|||+...-.+.+.+.++++.||+.++.=
T Consensus 31 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 31 GDPVEAARAYDE--AGADELVFLDISATH-EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp TCHHHHHHHHHH--HTCSCEEEEECCSST-TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCCccc-cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 355565666554 3345 4556765433 22 245566665 699999988889999999999999888763
No 285
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=38.32 E-value=1.3e+02 Score=28.42 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=42.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhh-----cCCCCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFS-----DKPENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe~L~-----~~~~~pDLVIlDl~m 73 (546)
..+|..||-++...+..++.++..|+ +|. ...+..+.+..+. . ..||+|++|...
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~--~~fD~V~~d~~~ 166 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH--GSYDFIFVDADK 166 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT--TCBSEEEECSCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC--CCEEEEEEcCch
Confidence 46899999999999999999988876 344 5677777776553 3 579999999753
No 286
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=38.24 E-value=53 Score=32.87 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCEEEEEe----CCHHHHHHHHHHHhhCCCEEEEECCH-----------------------------------------
Q 009017 16 KGLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFYNE----------------------------------------- 50 (546)
Q Consensus 16 ~~~rILIVD----DD~~~~~~L~~~Le~~Gy~V~~ass~----------------------------------------- 50 (546)
.|+|||++- -+-.-...|.+.|.+.|++|..+...
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHLM 98 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHH
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcCCEEEeccccccccccchhhccccHHHHHHHH
Q ss_pred ---------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 51 ---------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 51 ---------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
.+..+.++. ..||+||+|..+.- +..++.+...+|+|.+.
T Consensus 99 ~~~~~~~~~~~l~~~l~~--~~PDlVi~d~~~~~---~~~~aA~~~giP~v~~~ 147 (415)
T 3rsc_A 99 YLRENVSVLRATAEALDG--DVPDLVLYDDFPFI---AGQLLAARWRRPAVRLS 147 (415)
T ss_dssp HHHHHHHHHHHHHHHHSS--SCCSEEEEESTTHH---HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCEEEECchhhh---HHHHHHHHhCCCEEEEE
No 287
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=38.11 E-value=21 Score=34.36 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=36.4
Q ss_pred CCEEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~--------~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+++|+|+.+... ....+...|++.||+|..+......+..+.. ..+|+|+.-++
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~--~~~d~v~~~~~ 63 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIALH 63 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT--TTEEEEEECCC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc--cCCCEEEEcCC
Confidence 368999886541 3456778888999999877654332333444 57899887653
No 288
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=38.09 E-value=81 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=36.9
Q ss_pred cCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHH
Q 009017 306 QNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 356 (546)
Q Consensus 306 ~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr 356 (546)
+-.||++=.+++++||++.|..+ =+.|-+.|+. |=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45799999999999999999542 3455566532 778889999888774
No 289
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=38.00 E-value=67 Score=30.43 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=62.2
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHhC------CCcEEEEecCC
Q 009017 31 AELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK------DLPTIITSNIH 98 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp----~~~dGlellr~Lr------~iPIIvLSs~~ 98 (546)
......|++.||.+. -+.++...+..+.. ..+|.|=+|-.+- .......+++.+. .+.| +..+-.
T Consensus 142 ~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v-iaeGVE 218 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVE 218 (259)
T ss_dssp HHHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-EECCCC
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-EEEeCC
Confidence 334456677899866 45677778888888 7899999996331 1011233444442 4444 466667
Q ss_pred ChHHHHHHHHcCCCEE----EeCCCCHHHHHHHHH
Q 009017 99 CLSTMMKCIALGAVEF----LRKPLSEDKLRNLWQ 129 (546)
Q Consensus 99 d~e~i~~Al~aGAdDY----L~KP~~~eeL~~~I~ 129 (546)
+.+....+.+.|++.+ +.||...+++...+.
T Consensus 219 t~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 219 NAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp SHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 7888888889997643 679999999887554
No 290
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=37.91 E-value=56 Score=32.38 Aligned_cols=73 Identities=22% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHhhCCCEEEEECC-------------------------------------------
Q 009017 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFYN------------------------------------------- 49 (546)
Q Consensus 17 ~~rILIVD----DD~~~~~~L~~~Le~~Gy~V~~ass------------------------------------------- 49 (546)
.||||++- .+-.-...|...|.+.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 50 ----------------------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 50 ----------------------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
..+..+.++. ..||+|++| .. .-...++.+...+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~---~~-~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVD---VC-ALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEE---TT-CHHHHHHHHHTTCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeC---cc-hhHHHHHHHHhCCCEEEEe
No 291
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=37.87 E-value=1.8e+02 Score=28.36 Aligned_cols=101 Identities=12% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeE-EEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHV-AIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDL-VIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
|++|.||.--..-...+..+.+..+++++ .++...+..+.+.. .+.+ ... .+--+++ -.++-+|++
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~---~~~~~~~~-------~~~~~~l--~~~~D~V~i 68 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFAS---RYQNIQLF-------DQLEVFF--KSSFDLVYI 68 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGG---GSSSCEEE-------SCHHHHH--TSSCSEEEE
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHH---HcCCCeEe-------CCHHHHh--CCCCCEEEE
Confidence 36889998765544444443333467765 55543443343333 1221 111 1222333 135566666
Q ss_pred ecCCC--hHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 95 SNIHC--LSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 95 Ss~~d--~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+.... .+.+..|+++|..=|+-||+ +.++....++
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 107 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQ 107 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHH
Confidence 55433 46788899999999999997 4555554433
No 292
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=37.73 E-value=1.1e+02 Score=30.93 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=40.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~ 75 (546)
.+|.+||=++.+.+..++.+... +-++. ...++.+.+..+.. ..||+||+|...+.
T Consensus 114 ~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 114 SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGA 171 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTS
T ss_pred cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCcc
Confidence 58999999999998888887542 22333 57777776655444 57999999986553
No 293
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=37.42 E-value=44 Score=29.62 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=44.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
++|||..-...+...+...|.+.|++|..+....+.+..+.. ....++..|+. + --++.+.++.+-+|+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~--~---~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--RPAHVVVGDVL--Q---AADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC--CCSEEEESCTT--S---HHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccC--CceEEEEecCC--C---HHHHHHHHcCCCEEEECc
Confidence 689999999999999988888889998855432222221112 23555666653 2 223444455666666544
No 294
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.39 E-value=67 Score=30.57 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass-----~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+.. ..+.++.+.. ..+|-||+--.... . +.++.+. .+|+|++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPE-D---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSS-C---HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCC-h---HHHHHHHhCCCCEEEECCC
Confidence 345566667788999775432 2456677776 57888887543323 2 4555554 7999988653
No 295
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=37.31 E-value=2e+02 Score=28.07 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=55.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
+++|.||.--..-...+...|.. .+++++.++...+..+.+... .....+.. +..+++ -.++-+|+++
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~-~g~~~~~~--------~~~~~l--~~~~D~V~i~ 70 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR-YRVSATCT--------DYRDVL--QYGVDAVMIH 70 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH-TTCCCCCS--------STTGGG--GGCCSEEEEC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH-cCCCcccc--------CHHHHh--hcCCCEEEEE
Confidence 47899998865444334444444 477876555444444433320 11111011 112222 1355666665
Q ss_pred cCCC--hHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 009017 96 NIHC--LSTMMKCIALGAVEFLRKPLS--EDKLRNLW 128 (546)
Q Consensus 96 s~~d--~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I 128 (546)
.... .+.+..|+++|..-|+-||+. .++....+
T Consensus 71 tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~ 107 (323)
T 1xea_A 71 AATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLY 107 (323)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHH
T ss_pred CCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHH
Confidence 5433 466778999999999999975 55555433
No 296
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=36.69 E-value=88 Score=29.52 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+++.+++ ..||+| . -||+ .- -+++++++ ++|||+=-.-.+.+.+.+|+++||+...+
T Consensus 118 ~~~~~i~~--~~PD~i--E-iLPG-i~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 118 KGVALIQK--VQPDCI--E-LLPG-II-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHH--HCCSEE--E-EECT-TC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHhh--cCCCEE--E-ECCc-hh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 46777777 678977 2 2576 33 36777776 89998766677899999999999988765
No 297
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=36.19 E-value=51 Score=31.94 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=63.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecC---------CCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVT---------TSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~---------mp~~~dGlellr~L 86 (546)
.+++|+.+.+ ....++++.+..+-.|. -.-+..+..+++.. .|++|+-.. ..+ .-|+.+++.+
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E-~~~~~~~EAm 262 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCE-PGATVVSEAA 262 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCC-CCCHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCccccccccccccc-CccHHHHHHH
Confidence 4567776543 22333333333222233 23345555666665 477776443 134 4577888888
Q ss_pred C-CCcEEEEecCCChHHHHHHHHc--CCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 87 K-DLPTIITSNIHCLSTMMKCIAL--GAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 87 r-~iPIIvLSs~~d~e~i~~Al~a--GAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
. .+|||... .. ...+.++. |..+|+..+ +.++|.++|..++.
T Consensus 263 a~G~PvI~s~-~~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 VSGTPVVGTG-NG---CLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp HTTCCEEECC-TT---THHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred hcCCCEEEcC-CC---ChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 6 88987543 22 24455666 778899999 99999998877654
No 298
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=36.06 E-value=52 Score=32.64 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=60.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCH-HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNE-NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~-~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
..|+||-||.--..-+..+...|... +++++ +++.- +.|-+...+ ....-+.. +--++++. .++-+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~g~~~~y~--------d~~ell~~-~~iDa 89 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR--FSVPHAFG--------SYEEMLAS-DVIDA 89 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH--HTCSEEES--------SHHHHHHC-SSCSE
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH--cCCCeeeC--------CHHHHhcC-CCCCE
Confidence 45789999998766655555566554 77876 45433 333333333 11111221 22233332 24556
Q ss_pred EEEecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 92 IITSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 92 IvLSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
|+++... -.+.+.+|+++|..=|+-||+. .++..+.++
T Consensus 90 V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 131 (350)
T 4had_A 90 VYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIA 131 (350)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHH
T ss_pred EEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHH
Confidence 6665543 3578899999999999999975 455554443
No 299
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=35.81 E-value=38 Score=35.36 Aligned_cols=116 Identities=12% Similarity=0.150 Sum_probs=56.0
Q ss_pred cCCCccCcCCC--CCCEEEEEeC----CHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCe-eEEEEecCCCC
Q 009017 5 ANDLSAWKDFP--KGLRVLLLDQ----DSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENF-HVAIVEVTTSN 75 (546)
Q Consensus 5 ~~~~~~~~~m~--~~~rILIVDD----D~~~~~~L~~~Le~-~Gy~V~-~ass~~eALe~L~~~~~~p-DLVIlDl~mp~ 75 (546)
+++.+.-..|| ++++|.||.- -..-...+..+.+. .+++++ .++...+..+.+.+. ... ++-..
T Consensus 6 ~~~~~~~~~~m~m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~~------ 78 (438)
T 3btv_A 6 YNKRSSVSTVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR-LKLSNATAF------ 78 (438)
T ss_dssp -------------CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTCTTCEEE------
T ss_pred cCcCCccccccccCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH-cCCCcceee------
Confidence 34444444443 3589999987 32222233333333 478865 555444434333321 111 11111
Q ss_pred CCCHHHHHHHhCCCcEEEEecCC--ChHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHH
Q 009017 76 TDGSFKFLETAKDLPTIITSNIH--CLSTMMKCIALG------AVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 76 ~~dGlellr~Lr~iPIIvLSs~~--d~e~i~~Al~aG------AdDYL~KP~~--~eeL~~~I~ 129 (546)
.+--++++. .++-+|+++... -.+.+..|+++| ..=|+-||+. .++..+.++
T Consensus 79 -~~~~~ll~~-~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~ 140 (438)
T 3btv_A 79 -PTLESFASS-STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYK 140 (438)
T ss_dssp -SSHHHHHHC-SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHH
T ss_pred -CCHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHH
Confidence 122233332 245666665533 356788899999 8899999975 566555443
No 300
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=35.78 E-value=3.7e+02 Score=28.52 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=60.7
Q ss_pred CEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----------CCHH
Q 009017 18 LRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----------DGSF 80 (546)
Q Consensus 18 ~rILIVD----DD~~~~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp~~----------~dGl 80 (546)
..++++| +.....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|++...-... ...+
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~ 320 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQI 320 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCHH
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccHH
Confidence 4466665 3334445555555554 33433 46788887776665 57888875321110 1123
Q ss_pred HHHHHh----C--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 81 KFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 81 ellr~L----r--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+++..+ + .+|||.-.+-.+...+.+|+.+||+..+.=
T Consensus 321 ~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 321 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 333333 2 699998888888999999999999988764
No 301
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=35.76 E-value=82 Score=30.10 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
.+...+...+++.||.+..+.. .+ +.++.+.. ..+|.||+....+. ...++++.++ .+|+|++...
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ--VLSNVVKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTT--SCHHHHHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCeEEEECCc
Confidence 4556777888889999876543 22 45556666 57898887654332 2235666664 7899988654
No 302
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=35.67 E-value=53 Score=31.88 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=45.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
+|+|||..-...+...|...|.+.|++|+.+....+..+.+.. ....++..|+. + --.+.+.+..+-+|+-.+
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--~~~~~~~~Dl~--d---~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--LEPECRVAEML--D---HAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--GCCEEEECCTT--C---HHHHHHHTTTCSEEEEC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--CCeEEEEecCC--C---HHHHHHHHcCCCEEEECC
Confidence 4599999999999999999998889998865432222222332 23556666653 2 223444455666666544
No 303
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=35.67 E-value=36 Score=31.49 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCe-eEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENF-HVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~p-DLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
.++++|||..-...+...+...|.+.|++|..+....+.++.+.. ... .++.+|+. .. +.+.+..+-+|+
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl~-~~------~~~~~~~~D~vi 89 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGASDIVVANLE-ED------FSHAFASIDAVV 89 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTCSEEEECCTT-SC------CGGGGTTCSEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCCceEEEcccH-HH------HHHHHcCCCEEE
Confidence 346799999999999999999998889998855544444444544 356 77888876 22 223344566666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
..+
T Consensus 90 ~~a 92 (236)
T 3e8x_A 90 FAA 92 (236)
T ss_dssp ECC
T ss_pred ECC
Confidence 544
No 304
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=35.61 E-value=1.1e+02 Score=28.94 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=43.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs 96 (546)
|+|||..-...+...+...|.+. |++|..+....+....+.. ....++..|+. |--.+.+.++.+-+|+..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~--~~v~~~~~D~~-----d~~~l~~~~~~~d~vi~~a 73 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWR--GKVSVRQLDYF-----NQESMVEAFKGMDTVVFIP 73 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGB--TTBEEEECCTT-----CHHHHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhh--CCCEEEEcCCC-----CHHHHHHHHhCCCEEEEeC
Confidence 36999998888888888888876 8888754432222223333 34666666653 2223444455555555543
No 305
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.59 E-value=1.2e+02 Score=28.51 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHC 99 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d 99 (546)
+...+.+.+++.||.+..+.. . .+.++.+.. ..+|.||+.-... ..++++.+. .+|+|++.....
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~~~~~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG----EHDYLRTELPKTFPIVAVNRELR 98 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS----CCHHHHHSSCTTSCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC----ChHHHHHhhccCCCEEEEecccC
Confidence 345566777788999876553 2 235566666 5789888743322 235667775 799998876443
No 306
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=35.47 E-value=1.4e+02 Score=28.89 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhh-CCCEEEEE-CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh-C-CCcEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEA-MDYIVSTF-YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K-DLPTII 93 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~-~Gy~V~~a-ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L-r-~iPIIv 93 (546)
+||.|+.-.-.+...+.+.+.. .+++++.+ ....+.-+.+.. .+| |++|..-|+ ...+.++.. + .+++|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~---~~D-vvIDfT~p~--a~~~~~~~a~~~g~~~Vi 74 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDG---NTE-VVIDFTHPD--VVMGNLEFLIDNGIHAVV 74 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHT---TCC-EEEECSCTT--THHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhcc---CCc-EEEEccChH--HHHHHHHHHHHcCCCEEE
Confidence 4788998766666667776664 48997744 322211122222 468 788888776 456666553 2 677777
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
-|.
T Consensus 75 gTT 77 (245)
T 1p9l_A 75 GTT 77 (245)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 307
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=35.46 E-value=87 Score=27.52 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=40.7
Q ss_pred CcCCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 11 ~~~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
++++ .+.+|.++..... ..+|+..|..+..+.+..++++.+.. ...|+++++.
T Consensus 107 ~~dL-~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~--g~~D~~~~~~ 159 (228)
T 2pyy_A 107 IDDL-PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQT--KKADAVVFDA 159 (228)
T ss_dssp GGGC-TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HHHc-CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 3443 3578888776652 34556678899999999999999999 7899999974
No 308
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=35.36 E-value=88 Score=31.27 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHH-HHHHhhcCCCCe--eEEEEecCCCCCCCHHHHHHHhCCC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENE-ALSAFSDKPENF--HVAIVEVTTSNTDGSFKFLETAKDL 89 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~e-ALe~L~~~~~~p--DLVIlDl~mp~~~dGlellr~Lr~i 89 (546)
|+++++|.||.--..-...+..+....+++++ .++...+ +...... ..+ +.... .+--++++. .++
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~--~~~~~~~~~~-------~~~~~ll~~-~~~ 72 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA--NNYPESTKIH-------GSYESLLED-PEI 72 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH--TTCCTTCEEE-------SSHHHHHHC-TTC
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH--hCCCCCCeee-------CCHHHHhcC-CCC
Confidence 45568999998765544444443333467765 4543333 3333333 111 11111 122233332 135
Q ss_pred cEEEEecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHH
Q 009017 90 PTIITSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNL 127 (546)
Q Consensus 90 PIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~ 127 (546)
-+|+++... -.+.+..|+++|..=|+-||+. .++....
T Consensus 73 D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l 114 (362)
T 1ydw_A 73 DALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKI 114 (362)
T ss_dssp CEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHH
T ss_pred CEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHH
Confidence 555555433 3577889999999999999964 4554443
No 309
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=35.36 E-value=69 Score=30.36 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCEEEEEC--C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVSTFY--N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~as--s---~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~ 97 (546)
...+.+.+++.||.+..+. + ..+.++.+.. ..+|-||+--.... . +.++.+. .+|+|++...
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~-~~~~~~~~~iPvV~i~~~ 97 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRFD---T-DELGALADRVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCCC---H-HHHHHHHTTSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCCC---H-HHHHHHHcCCCEEEEcCC
Confidence 3456666778899977443 2 4566777766 67998887543323 2 4555554 8999988654
No 310
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=35.26 E-value=1.4e+02 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.8
Q ss_pred CEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC
Q 009017 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 18 ~rILIVDDD~~----~~~~L~~~Le~~Gy~V~~as 48 (546)
||||++-.... ....|...|.+.|++|..+.
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEe
Confidence 78998865431 12356777878899987554
No 311
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=35.21 E-value=66 Score=32.06 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=21.0
Q ss_pred CCEEEEEeCCH----HHHHHHHHHHhhCCCEEEEEC
Q 009017 17 GLRVLLLDQDS----SAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 17 ~~rILIVDDD~----~~~~~L~~~Le~~Gy~V~~as 48 (546)
+||||++-... .-...|...|.+.|++|..+.
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~ 50 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAA 50 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEc
Confidence 47999885431 112357777888899987554
No 312
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=35.06 E-value=41 Score=33.30 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
|++++|||..-...+...|...|.+. ||+|+.+....+.+..+... ..+.++..|+.. +.-.+.+.+..+-+|+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~-~~v~~~~~Dl~~----d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH-ERMHFFEGDITI----NKEWVEYHVKKCDVIL 96 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGS-TTEEEEECCTTT----CHHHHHHHHHHCSEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccC-CCeEEEeCccCC----CHHHHHHHhccCCEEE
Confidence 34679999999999998888888776 89988554333222222221 356777777641 2222333344555555
Q ss_pred Ee
Q 009017 94 TS 95 (546)
Q Consensus 94 LS 95 (546)
-.
T Consensus 97 h~ 98 (372)
T 3slg_A 97 PL 98 (372)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 313
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=35.04 E-value=2.2e+02 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+++++.++ ++|||...+-.+.+.+.+++++||+....
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~v 269 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 46777775 68999887777899999999999987754
No 314
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.84 E-value=85 Score=29.72 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=45.4
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+..+.+.+ ..+| |.+.|+.-... ..-++++++++ .+|||+-.+-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 45555566655 4455 44566643210 22368888886 69999988888899999999999887764
No 315
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=34.73 E-value=63 Score=30.47 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=47.5
Q ss_pred HHHHhhCCCEEE-EE--CCHHHHHHHhhcCCC--CeeEEEEecCCCCCCC-------HHHHHHHhC----CCcEEEEecC
Q 009017 34 KFKLEAMDYIVS-TF--YNENEALSAFSDKPE--NFHVAIVEVTTSNTDG-------SFKFLETAK----DLPTIITSNI 97 (546)
Q Consensus 34 ~~~Le~~Gy~V~-~a--ss~~eALe~L~~~~~--~pDLVIlDl~mp~~~d-------Glellr~Lr----~iPIIvLSs~ 97 (546)
.+.++..|..+. .+ .+..+.++.+.. . ..|.|+++...|+ .. +++.+++++ ++||++.-+-
T Consensus 106 ~~~i~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg-~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI 182 (228)
T 1h1y_A 106 IQSIKAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPG-FGGQKFMPEMMEKVRALRKKYPSLDIEVDGGL 182 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCC-CCcccCCHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 344455566644 33 233344444433 2 4799999876664 32 344455443 6777665544
Q ss_pred CChHHHHHHHHcCCCEEEeC
Q 009017 98 HCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~K 117 (546)
+.+.+.+++++||+.++.=
T Consensus 183 -~~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 183 -GPSTIDVAASAGANCIVAG 201 (228)
T ss_dssp -STTTHHHHHHHTCCEEEES
T ss_pred -CHHHHHHHHHcCCCEEEEC
Confidence 4467778888899998764
No 316
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=34.73 E-value=1.4e+02 Score=30.79 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=39.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCC---C------EE-EEECCHHHHHHHh--hcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMD---Y------IV-STFYNENEALSAF--SDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~G---y------~V-~~ass~~eALe~L--~~~~~~pDLVIlDl~m 73 (546)
.+|.+||-|+...+..++.|...+ + ++ +...++.+.++.+ .. ..||+||+|..-
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~--~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG--REFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT--CCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC--CCceEEEECCCC
Confidence 579999999999999988875321 1 23 3677888887765 33 579999999865
No 317
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=34.43 E-value=1.2e+02 Score=29.74 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKL-EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~L-e~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-...+..+. ...+++++ .++...+..+.+... ...+-+.- +--++++. .++-+|+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~--------~~~~~l~~-~~~D~V~ 76 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYT--------NYKDMIDT-ENIDAIF 76 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEES--------CHHHHHTT-SCCSEEE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccC--------CHHHHhcC-CCCCEEE
Confidence 4579999987654444444444 23478865 455444444444331 12211211 22223221 1455666
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRN 126 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~ 126 (546)
++... -.+.+..|+++|..-|+-||+. .++..+
T Consensus 77 i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~ 113 (346)
T 3cea_A 77 IVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDE 113 (346)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHH
T ss_pred EeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHH
Confidence 55443 3467888999999888999965 555544
No 318
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=34.42 E-value=46 Score=33.16 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=50.7
Q ss_pred CCEEEEEeCC-----HHHHHHHHHHHhhCCCEEEEECCHHHH-----------------HHHhh---cCCCCeeEEEEec
Q 009017 17 GLRVLLLDQD-----SSAAAELKFKLEAMDYIVSTFYNENEA-----------------LSAFS---DKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD-----~~~~~~L~~~Le~~Gy~V~~ass~~eA-----------------Le~L~---~~~~~pDLVIlDl 71 (546)
|.+|+||-.. ......+...|++.|++|....+..+. ...+. .....+|+||+=
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~- 82 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL- 82 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE-
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEE-
Confidence 4578877431 234677888898999987754433221 11110 001346877762
Q ss_pred CCCCCCCH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 72 TTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 72 ~mp~~~dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+ .|| +..++.+. ++|++-+.. |-.+||.. +..+++..+++.++.
T Consensus 83 ---G-GDGT~l~a~~~~~~~~~pvlgi~~-------------G~~gfl~~-~~~~~~~~~~~~i~~ 130 (307)
T 1u0t_A 83 ---G-GDGTFLRAAELARNASIPVLGVNL-------------GRIGFLAE-AEAEAIDAVLEHVVA 130 (307)
T ss_dssp ---E-CHHHHHHHHHHHHHHTCCEEEEEC-------------SSCCSSCS-EEGGGHHHHHHHHHH
T ss_pred ---e-CCHHHHHHHHHhccCCCCEEEEeC-------------CCCccCcc-cCHHHHHHHHHHHHc
Confidence 3 577 45555554 788887642 22345442 345666666666654
No 319
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=34.41 E-value=1.4e+02 Score=30.70 Aligned_cols=54 Identities=9% Similarity=-0.015 Sum_probs=33.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC------------------CHHHHHHHhhcCCCCeeEEEEe
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY------------------NENEALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as------------------s~~eALe~L~~~~~~pDLVIlD 70 (546)
.++++|||+............+.++.|+.++.+. +.++.++.+++ ..+|+|+..
T Consensus 19 ~~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~d~vi~~ 90 (451)
T 2yrx_A 19 QSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQ--QAIDLTIVG 90 (451)
T ss_dssp CSSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHH--TTCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHH--cCCCEEEEC
Confidence 3457999999985433233333456688744321 34455666666 678998874
No 320
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.00 E-value=1.6e+02 Score=26.08 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCC--HHHHHHHhC--CCcE
Q 009017 19 RVLLLD--QDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDG--SFKFLETAK--DLPT 91 (546)
Q Consensus 19 rILIVD--DD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L~~~~~~pDLVIlDl~mp~~~d--Glellr~Lr--~iPI 91 (546)
+|+++. ........+...|...|..+.... +..+....+..- ..=|++|+ +...+ .. -+++++.++ .+++
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~d~~i~-iS~sG-~t~~~~~~~~~ak~~g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL-RPTDLMIG-VSVWR-YLRDTVAALAGAAERGVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC-CTTEEEEE-ECCSS-CCHHHHHHHHHHHHTTCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC-CCCCEEEE-EeCCC-CCHHHHHHHHHHHHCCCCE
Confidence 677764 345566777888888899988877 555554444331 22365555 45444 22 345555554 7999
Q ss_pred EEEecCCChHHHHHHHHcCCCEEEeCCC
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFLRKPL 119 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL~KP~ 119 (546)
|.+|+..+..... .++..|.-|.
T Consensus 118 i~IT~~~~s~l~~-----~ad~~l~~~~ 140 (187)
T 3sho_A 118 MALTDSSVSPPAR-----IADHVLVAAT 140 (187)
T ss_dssp EEEESCTTSHHHH-----HCSEEEECCC
T ss_pred EEEeCCCCCcchh-----hCcEEEEecC
Confidence 9999876544322 2566665543
No 321
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=33.96 E-value=35 Score=33.84 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=53.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
++++|.||.--..-...+...|...+++++ .++...+..+.+.+. .. .+ .. - .+--++++. .++-+|++
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~-~~-~~-----~~-~-~~~~~ll~~-~~~D~V~i 72 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL-FP-SV-----PF-A-ASAEQLITD-ASIDLIAC 72 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH-ST-TC-----CB-C-SCHHHHHTC-TTCCEEEE
T ss_pred CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh-cC-CC-----cc-c-CCHHHHhhC-CCCCEEEE
Confidence 468999998643322223334445678865 444322222222220 10 10 00 0 122233221 14556666
Q ss_pred ecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 95 SNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 95 Ss~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
+... -.+.+..|+++|..=|+-||+. .++....++
T Consensus 73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~ 111 (336)
T 2p2s_A 73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQR 111 (336)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 5433 3577889999999999999965 556555444
No 322
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=33.87 E-value=30 Score=31.80 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
+++|+|+|........+.+.|++.|+++..+.+
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 368999974322234567888888988887764
No 323
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=33.78 E-value=83 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=40.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EE-EEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY-IV-STFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy-~V-~~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
.+|.-||-++...+..+..++..+. .+ ....+..+.+..+.. ..||+|++|.-.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~ 123 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPY 123 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCC
Confidence 4799999999999988888877664 34 366677776655544 579999998543
No 324
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=33.74 E-value=92 Score=27.82 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=40.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
+.+|.++.... ....+...+...++.+..+.+..++++.+.. ...|+++.|.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA--GRLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc--CCCCEEEeCc
Confidence 46787776554 4455666665557899999999999999999 7899999974
No 325
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=33.66 E-value=2.2e+02 Score=29.20 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHhC-----CCcEEEEecCCCh
Q 009017 32 ELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK-----DLPTIITSNIHCL 100 (546)
Q Consensus 32 ~L~~~Le~~Gy~--V~~ass~~eALe~L~~~~~~pDLVIlDl~mp----~~~dGlellr~Lr-----~iPIIvLSs~~d~ 100 (546)
.++.+-+..+.. +-.+.+.++|...... ..|.|++.-+-. .....++++..++ ++|||+-.+-.+.
T Consensus 208 ~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g 284 (352)
T 3sgz_A 208 DLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTG 284 (352)
T ss_dssp HHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSH
T ss_pred HHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCH
Confidence 344443444443 3356788888777665 589888854311 1023456665553 6999999999999
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
.++.+++.+||+....=
T Consensus 285 ~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 285 TDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999998764
No 326
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=33.58 E-value=30 Score=31.49 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC-CCCCCCH--HHHHHHh--CCCcEEEE
Q 009017 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT-TSNTDGS--FKFLETA--KDLPTIIT 94 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~-mp~~~dG--lellr~L--r~iPIIvL 94 (546)
|+|||-.......+.+.|++.|+.+..+.... .++.+.. ..+|.||+-=. -+. ..+ .++++.. .+.||+-+
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~-~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLE-NTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTT-CCTTHHHHHHTGGGTCSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChh-hhhhHHHHHHHHhhCCCeEEEE
Confidence 99999887777889999999999887665433 2233333 34777666211 111 112 3445443 25676655
Q ss_pred e
Q 009017 95 S 95 (546)
Q Consensus 95 S 95 (546)
.
T Consensus 79 C 79 (189)
T 1wl8_A 79 C 79 (189)
T ss_dssp T
T ss_pred c
Confidence 4
No 327
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=33.57 E-value=1e+02 Score=30.32 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC---CCEEE-EECCH-HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM---DYIVS-TFYNE-NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~---Gy~V~-~ass~-~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPI 91 (546)
++||.||.--..-.. ....|... +++++ .++.. +.+.+.... ....-+. .+--++++. .++-+
T Consensus 2 ~~rigiiG~G~ig~~-~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~-~~vD~ 69 (334)
T 3ohs_X 2 ALRWGIVSVGLISSD-FTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK--HDIPKAY--------GSYEELAKD-PNVEV 69 (334)
T ss_dssp CEEEEEECCSHHHHH-HHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH--HTCSCEE--------SSHHHHHHC-TTCCE
T ss_pred ccEEEEECchHHHHH-HHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH--cCCCccc--------CCHHHHhcC-CCCCE
Confidence 478999987765554 44445443 35655 44433 333333333 1111011 122234332 14555
Q ss_pred EEEecC--CChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 92 IITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 92 IvLSs~--~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
|+++.. .-.+.+.+|+++|..=|+-||+ +.++..+.++.
T Consensus 70 V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~ 112 (334)
T 3ohs_X 70 AYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTE 112 (334)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHH
Confidence 555443 3456788999999999999997 56676665543
No 328
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=33.57 E-value=81 Score=29.04 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHhhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHhC--------CCcEEEE
Q 009017 33 LKFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAK--------DLPTIIT 94 (546)
Q Consensus 33 L~~~Le~~Gy~V~-~a--ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dG-------lellr~Lr--------~iPIIvL 94 (546)
+.+.+++.|..+. .+ .+..++++.+.. ..|.|+++...++ .+| ++.++.++ ++||++.
T Consensus 101 ~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~---~~d~vl~~~~~~g-~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~ 176 (220)
T 2fli_A 101 ALQKIKAAGMKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPG-FGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD 176 (220)
T ss_dssp HHHHHHHTTSEEEEEECTTSCGGGGGGGTT---TCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHHh---hCCEEEEEEECCC-CcccccCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 3444555566644 34 233444444433 3788888766554 333 23333333 4666554
Q ss_pred ecCCChHHHHHHHHcCCCEEEeC
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~K 117 (546)
+--+.+.+.+++++||+.++.=
T Consensus 177 -GGI~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 177 -GGVDNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp -SSCCTTTHHHHHHHTCCEEEES
T ss_pred -CcCCHHHHHHHHHcCCCEEEEC
Confidence 4444677777888999988653
No 329
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=33.56 E-value=1.9e+02 Score=29.61 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-E-CC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 13 DFPKGLRVLLLDQDS---SAAAELKFKLEAMDYIVST-F-YN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 13 ~m~~~~rILIVDDD~---~~~~~L~~~Le~~Gy~V~~-a-ss-~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|+++||.||.--. .-...+..+....+++++. + +. .+.+-+.... +.+- .... - .+--++++.-
T Consensus 33 ~~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----~g~~--~~~~-~-~~~~~ll~~~ 104 (417)
T 3v5n_A 33 TRQKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----LGLD--PSRV-Y-SDFKEMAIRE 104 (417)
T ss_dssp --CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----HTCC--GGGB-C-SCHHHHHHHH
T ss_pred ccCCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----cCCC--cccc-c-CCHHHHHhcc
Confidence 345678999999876 3333333333333577653 3 33 3333333333 1110 0000 1 2334566542
Q ss_pred ----CCCcEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 87 ----KDLPTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 87 ----r~iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
.++-+|+++... -.+.+..|+++|..=|+-||+ +.++..+.++
T Consensus 105 ~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 155 (417)
T 3v5n_A 105 AKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKK 155 (417)
T ss_dssp HHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHH
T ss_pred cccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHH
Confidence 245555555433 467888999999999999996 4566665444
No 330
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=33.55 E-value=2e+02 Score=26.91 Aligned_cols=74 Identities=8% Similarity=0.209 Sum_probs=51.2
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecC----CCCCCCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHc-----C-CCEE
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVT----TSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL-----G-AVEF 114 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~----mp~~~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~a-----G-AdDY 114 (546)
+..+....+.+ ..++ +++.++. +.+ . .++++++++ ++|||...+-.+.+.+.++++. | |+++
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g-~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv 220 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQE-H-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGV 220 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCC-C-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCc-C-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEE
Confidence 55665555655 4567 4555542 122 2 378888876 7999999888888999999998 9 9988
Q ss_pred Ee------CCCCHHHHHH
Q 009017 115 LR------KPLSEDKLRN 126 (546)
Q Consensus 115 L~------KP~~~eeL~~ 126 (546)
+. .+++..+++.
T Consensus 221 ~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 221 IVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp EECHHHHTTSSCHHHHHH
T ss_pred EeeHHHHcCCCCHHHHHH
Confidence 65 3666666554
No 331
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.44 E-value=1.3e+02 Score=28.02 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC--CCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr--~iPIIvLSs~ 97 (546)
.+...+.+.+++.||.+..+.. .+ +.++.+.. ..+|-||+.-...... ...++++.++ .+|+|++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC
Confidence 3456677778888999876542 22 35555656 5788888743321101 2346666665 7999988654
No 332
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.30 E-value=85 Score=29.43 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
+...+.+.+++.||.+..+... .+.++.+.. ..+|.||+--.... + +.++.+. .+|+|++....
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~~~~~~ 102 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSREN--D--RIIQYLHEQNFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCBTT--C--HHHHHHHHTTCCEEEESCCS
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC--h--HHHHHHHHCCCCEEEECCCC
Confidence 3455667777889998765432 234556666 57898887332212 1 4556553 79999886543
No 333
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=35 Score=25.89 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=36.5
Q ss_pred cCCCCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 009017 301 KASGLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 360 (546)
Q Consensus 301 ~~~~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~ 360 (546)
+.+.....||++=|+.|++|+.+.|-+ =..|-.+ |+|=|..+|..| |-+.++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~---w~~Ia~~--l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKN---FGLIASY--LERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTC---HHHHHHH--CTTSCHHHHHHH---HHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCC---HHHHHHH--cCCCCHHHHHHH---HHHhcC
Confidence 444556799999999999999999932 2455544 578888777644 544443
No 334
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=33.23 E-value=2.1e+02 Score=23.80 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCEEEEEeCCHHHH-----HHHHHHHhhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCC
Q 009017 17 GLRVLLLDQDSSAA-----AELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~-----~~L~~~Le~~Gy~-V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~i 89 (546)
+++||+|=+...-. ..+++.+.+.|+. + +.+.+..++-..+. .+|+||+-..+.. .- + .....
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~~----~~DlIi~t~~l~~-~~--~---~~~~~ 87 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLAS----NYDIVVASNHLIH-EL--D---GRTNG 87 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGG----GCSEEEEETTTGG-GT--T---TSCSS
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhccC----CCcEEEECCchHH-Hh--C---cCCCc
Confidence 46888887665332 2455677777876 4 46667777655543 4899999877654 21 1 11246
Q ss_pred cEEEEecCCChHHHHHH
Q 009017 90 PTIITSNIHCLSTMMKC 106 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~A 106 (546)
+++.+...-+.+.+.+.
T Consensus 88 ~vi~i~~~l~~~ei~~~ 104 (110)
T 3czc_A 88 KLIGLDNLMDDNEIKTK 104 (110)
T ss_dssp EEEEESSTTCHHHHHHH
T ss_pred eEEEeeccCCHHHHHHH
Confidence 77877776666555443
No 335
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=33.03 E-value=89 Score=26.10 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=44.9
Q ss_pred CEEEEEeCCH----HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh---CCC
Q 009017 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KDL 89 (546)
Q Consensus 18 ~rILIVDDD~----~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L---r~i 89 (546)
++||+|=... .....+++.+.+.|+.+. .+.+..++-..+ ..+|+||+-..+.. -++-++.. .++
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~---~~~~~~~~~~~~~~ 77 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRF---NKKRLEEITKPKGI 77 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSS---HHHHHHHHHHHHTC
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHH---HHHHHHHHhcccCC
Confidence 5788774321 677788888888887532 333444444433 35899999887755 23333332 278
Q ss_pred cEEEEec
Q 009017 90 PTIITSN 96 (546)
Q Consensus 90 PIIvLSs 96 (546)
||+++..
T Consensus 78 pv~~I~~ 84 (109)
T 2l2q_A 78 PIEIINT 84 (109)
T ss_dssp CEEECCH
T ss_pred CEEEECh
Confidence 9988875
No 336
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=33.03 E-value=1e+02 Score=31.79 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=53.2
Q ss_pred HHHHHHHHhhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEecCCCCC--------------------CCHHHHHH
Q 009017 30 AAELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVEVTTSNT--------------------DGSFKFLE 84 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~--~a---ss~~eALe~L~~~~~~pDLVIlDl~mp~~--------------------~dGlellr 84 (546)
.+.|+.+-+..+.-|. .+ .+.++|..+... .+|.|+++-. .+. ....+.+.
T Consensus 195 ~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~ 270 (365)
T 3sr7_A 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLL 270 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHHH
Confidence 3455555555554444 33 567777666655 5788877543 110 11123333
Q ss_pred HhC----CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 85 TAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 85 ~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++ ++|||+-.+-.+..++.+++.+||+.+..=
T Consensus 271 ~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 271 NAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 333 688888888889999999999999998764
No 337
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.98 E-value=1e+02 Score=26.12 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF 57 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L 57 (546)
.-|+|.|.|....+.+..-.++.||+|.++.+.++.-..+
T Consensus 78 vliiiydqdqnrleefsrevrrrgfevrtvtspddfkksl 117 (134)
T 2l69_A 78 VLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSL 117 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHH
T ss_pred EEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHH
Confidence 4456667777777777777777788888887777654443
No 338
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=32.96 E-value=1.4e+02 Score=28.39 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
...+.+.+++.||.+..+... .+.++.+.. ..+|-||+--.... + +.++.++ .+|+|++...
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~i~~~ 115 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD--D--PIEHLLNEFKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT--C--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC--c--HHHHHHHHcCCCEEEECCC
Confidence 345666677789998865532 235566666 57888777432222 1 4555554 7999988654
No 339
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=32.84 E-value=2.4e+02 Score=27.27 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC----HHHHHHHhhcCC-----CCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN----ENEALSAFSDKP-----ENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass----~~eALe~L~~~~-----~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
++++|||..-...+...|...|.+.|++|..+.. ..+.+..+.... ..+.++..|+. + --.+.+.+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d---~~~~~~~~ 98 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR--D---LTTCEQVM 98 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT--C---HHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC--C---HHHHHHHh
Confidence 4579999999999999999999888999886543 233344333200 13566666653 2 22344445
Q ss_pred CCCcEEEEec
Q 009017 87 KDLPTIITSN 96 (546)
Q Consensus 87 r~iPIIvLSs 96 (546)
..+-+|+-.+
T Consensus 99 ~~~d~Vih~A 108 (351)
T 3ruf_A 99 KGVDHVLHQA 108 (351)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEECC
Confidence 5666666554
No 340
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=32.53 E-value=56 Score=32.36 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH---Hh----CCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE---TA----KDL 89 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr---~L----r~i 89 (546)
|+||.||.--..+.......|...+.+++.+.+.......+.+ ..+.+-+. .+--++++ .+ .++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~--~~~~~~~~-------~~~~~ll~~~~~l~~~~~~v 73 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDS--FFPEAEFF-------TEPEAFEAYLEDLRDRGEGV 73 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGG--TCTTCEEE-------SCHHHHHHHHHHHHHTTCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHh--hCCCCcee-------CCHHHHHHHhhhhcccCCCC
Confidence 5799999873222233444444557776644432222122222 11122111 11223332 22 256
Q ss_pred cEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 009017 90 PTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHV 131 (546)
Q Consensus 90 PIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~v 131 (546)
-+|+++... -.+.+..|+++|..=|+-||+ +.++..+.++.+
T Consensus 74 D~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 119 (312)
T 3o9z_A 74 DYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELE 119 (312)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHH
T ss_pred cEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 666665433 457788999999999999996 456766655543
No 341
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=32.51 E-value=1.5e+02 Score=27.61 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+-.. .. .+.++.+. .+|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~----~~-~~~~~~l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSF----SN-PQTVQEILHQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESS----CC-HHHHHHHHTTSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC----Cc-HHHHHHHHHCCCCEEEEecc
Confidence 3445666677889998755432 245666666 67888887532 22 56666665 7999988654
No 342
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=32.40 E-value=74 Score=28.93 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=43.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy---~V~-~ass~~eALe~L~~~~~~-pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.-||-++...+..+..++..|+ .+. ...+..+.+..+.. .. ||+|++|.-... .+..++++.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I~~~~~~~~-~~~~~~l~~~ 147 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN--QPHFDVVFLDPPFHF-NLAEQAISLL 147 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS--SCCEEEEEECCCSSS-CHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc--CCCCCEEEECCCCCC-ccHHHHHHHH
Confidence 4799999999999999998888775 354 44455544332223 57 999999865333 2333455544
No 343
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=32.38 E-value=1.6e+02 Score=27.52 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+.. . .+.++.+.. ..+|.||+...... ..-++.++ ..+|+|++...
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVITMDALSE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEECCCGGG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEeCCCCC-hHHHHHHh--cCCCEEEEccc
Confidence 345566677788999775542 2 234555555 57898887432111 11233333 68999988653
No 344
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=32.17 E-value=1.1e+02 Score=30.22 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=56.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
++++|.||.--..-...+..+.+..+++++ .++...+..+.+.. .+.+. .. - .+--+++.. .++-+|++
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~---~~~~~----~~-~-~~~~~ll~~-~~~D~V~i 73 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK---ELAIP----VA-Y-GSYEELCKD-ETIDIIYI 73 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH---HTTCC----CC-B-SSHHHHHHC-TTCSEEEE
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH---HcCCC----ce-e-CCHHHHhcC-CCCCEEEE
Confidence 457999998865555444444443578876 34433333333322 11110 00 1 122334432 14445555
Q ss_pred ecC--CChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 95 SNI--HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 95 Ss~--~d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
+.. .-.+.+..|+++|..=|+-||+. .++....++
T Consensus 74 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~ 112 (330)
T 3e9m_A 74 PTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFA 112 (330)
T ss_dssp CCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 443 34567889999999999999964 566555443
No 345
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=32.10 E-value=1.4e+02 Score=27.74 Aligned_cols=64 Identities=9% Similarity=0.176 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+.+ .+ +.++.+.. ..+|-||+...... ...+.++.++ .+|+|++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 19 LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD--AVGNAVKMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCcEEEecC
Confidence 334556667778999876532 22 34555555 57998887432211 1124555554 799998864
No 346
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=32.03 E-value=1.4e+02 Score=27.98 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=44.1
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCC--CHHHHHHHhC---CCcEEEEecCCChHHHHHHHHc---CCCEEEeC
Q 009017 49 NENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL---GAVEFLRK 117 (546)
Q Consensus 49 s~~eALe~L~~~~~~pD-LVIlDl~mp~~~--dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~a---GAdDYL~K 117 (546)
+..+.++.+.. ..+| +++.+..-.+.. -.++++++++ ++|||+..+-.+.+.+.+++++ ||+.++.=
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG 222 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVG 222 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeee
Confidence 45565555555 4567 455665422101 1367777775 6899998888888999999999 99998753
No 347
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=32.01 E-value=1.7e+02 Score=27.25 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEE---EEecCCCCC----CCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcC
Q 009017 41 DYIVS-TFYNENEALSAFSDKPENFHVA---IVEVTTSNT----DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALG 110 (546)
Q Consensus 41 Gy~V~-~ass~~eALe~L~~~~~~pDLV---IlDl~mp~~----~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aG 110 (546)
+..+. .+.+.+++...+.. ..|+| +..+. ++. ...+++++.++ ++||++..+-.+.+.+.+++++|
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~~ipvia~GGI~s~~~~~~~~~~G 208 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLG 208 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTC
T ss_pred CCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC
Confidence 55544 56788887776655 47877 33321 110 12367777765 79999888888899999999999
Q ss_pred CCEEEeC
Q 009017 111 AVEFLRK 117 (546)
Q Consensus 111 AdDYL~K 117 (546)
|+.++.=
T Consensus 209 ad~v~vG 215 (234)
T 1yxy_A 209 VAGIVVG 215 (234)
T ss_dssp CSEEEEC
T ss_pred CCEEEEc
Confidence 9998764
No 348
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=31.95 E-value=91 Score=29.84 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
+++|||..-...+...|...|.+.|++|+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 46899999999999999999988899988654
No 349
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=31.94 E-value=1.1e+02 Score=28.67 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|.||+...... ..-.+.++....+|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHh--CCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccC
Confidence 345556667778999775542 22 34555555 57888777543222 112334433347999988654
No 350
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=31.84 E-value=1.7e+02 Score=27.95 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=53.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
+.+|||..-...+...+...|.+.|++|..+. +. .+.+..+.. ....++..|+. |--.+.+.++.+-+|
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~--~~v~~v~~Dl~-----d~~~l~~a~~~~d~v 83 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS--LGAIIVKGELD-----EHEKLVELMKKVDVV 83 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH--TTCEEEECCTT-----CHHHHHHHHTTCSEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc--CCCEEEEecCC-----CHHHHHHHHcCCCEE
Confidence 34799999888888888888888899887443 22 223333444 34677777764 223444556666666
Q ss_pred EEecC----CC-hHHHHHHHHcC-CCEEE
Q 009017 93 ITSNI----HC-LSTMMKCIALG-AVEFL 115 (546)
Q Consensus 93 vLSs~----~d-~e~i~~Al~aG-AdDYL 115 (546)
+.... .. ...+..|.+.| +.-|+
T Consensus 84 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 84 ISALAFPQILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp EECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred EECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence 65432 11 22333344556 55555
No 351
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=31.79 E-value=2.1e+02 Score=23.41 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=53.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH--hCCCcEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET--AKDLPTIIT 94 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~--Lr~iPIIvL 94 (546)
+.+|+|+.- ..+...+...|...|++|+.++...+.++.+.. ....++..|.. + .+.++. +...-+|++
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--~~~~~~~~d~~-----~-~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--YATHAVIANAT-----E-ENELLSLGIRNFEYVIV 76 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--TCSEEEECCTT-----C-HHHHHTTTGGGCSEEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--hCCEEEEeCCC-----C-HHHHHhcCCCCCCEEEE
Confidence 346999987 667777888888888887766554555555544 23344444431 2 334443 335556666
Q ss_pred ecCCC-h---HHHHHHHHcCCCEEEeCCCCH
Q 009017 95 SNIHC-L---STMMKCIALGAVEFLRKPLSE 121 (546)
Q Consensus 95 Ss~~d-~---e~i~~Al~aGAdDYL~KP~~~ 121 (546)
+...+ . .....+.+.|...++..--+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 55443 1 122334456665444444443
No 352
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=31.78 E-value=2e+02 Score=27.37 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=27.7
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I 128 (546)
.++|.+-|- .+.+.+.++++.|++++++- .++.+...+
T Consensus 210 G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~l 247 (252)
T 3qvq_A 210 GYKVLAFTI-NDESLALKLYNQGLDAVFSD--YPQKIQSAI 247 (252)
T ss_dssp TCEEEEECC-CCHHHHHHHHHTTCCEEEES--SHHHHHHHH
T ss_pred CCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHH
Confidence 577877765 57788889999999999874 455555443
No 353
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=31.64 E-value=2e+02 Score=27.31 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=43.7
Q ss_pred CeeEEEEecCCCCCCCH-------HHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEeC-----CCCHHHHHH
Q 009017 63 NFHVAIVEVTTSNTDGS-------FKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRN 126 (546)
Q Consensus 63 ~pDLVIlDl~mp~~~dG-------lellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K-----P~~~eeL~~ 126 (546)
..|+|++....|+ .+| ++-++++| +++ |.+.+--+.+.+..+.++||+.++.= --++.+-..
T Consensus 134 ~~D~Vl~msv~pG-f~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~ 211 (228)
T 3ovp_A 134 QIDMALVMTVEPG-FGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVIN 211 (228)
T ss_dssp GCSEEEEESSCTT-TCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHH
T ss_pred cCCeEEEeeecCC-CCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHH
Confidence 3688887666666 555 34455554 344 44556567788999999999998763 234555444
Q ss_pred HHHHHHHH
Q 009017 127 LWQHVVHK 134 (546)
Q Consensus 127 ~I~~vlrr 134 (546)
.++..+..
T Consensus 212 ~l~~~~~~ 219 (228)
T 3ovp_A 212 LLRNVCSE 219 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 354
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=31.58 E-value=1.8e+02 Score=26.31 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~--Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|||..-...+...+...|.+. |++|.......+.++.+. ....++.+|+. +--++.+.+..+-+|+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~D~~-----d~~~~~~~~~~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---GEADVFIGDIT-----DADSINPAFQGIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---CCTTEEECCTT-----SHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC---CCeeEEEecCC-----CHHHHHHHHcCCCEEE
Confidence 3578999999999998888888887 899885544333344442 24567777764 2223334455666666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
..+
T Consensus 75 ~~a 77 (253)
T 1xq6_A 75 ILT 77 (253)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
No 355
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=31.46 E-value=90 Score=29.22 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=42.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
-+|.+||-++...+..++.....+..+. ...+.++.+..+.. ..||.|+.|...
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeeee
Confidence 3688999999999999988888877765 56677776666666 679999999754
No 356
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=31.42 E-value=1.7e+02 Score=27.48 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=43.6
Q ss_pred CHHHHHHHhhcCCCCeeEE-EEecCCCCC--CCHHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 49 NENEALSAFSDKPENFHVA-IVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLV-IlDl~mp~~--~dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
+..+..+.+.+ ...|.| +.|...... ...+++++.++ ++|+++-..-.+.+.+..++++||+..+.-
T Consensus 31 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSE--IGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHH--cCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55555566655 445544 444432210 01245666665 689998888888899999999999988763
No 357
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.39 E-value=64 Score=30.05 Aligned_cols=66 Identities=9% Similarity=0.045 Sum_probs=45.8
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHHcCCCE
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIALGAVE 113 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-------~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~aGAdD 113 (546)
.+.+.+|+.... . ..|.|+++--.+.. .-|++.++.+. .+|||.+-+-. .+.+.+++++||++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 678888876664 4 37999887654320 12567766653 68999887654 67788899999998
Q ss_pred EEe
Q 009017 114 FLR 116 (546)
Q Consensus 114 YL~ 116 (546)
+-.
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 855
No 358
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.32 E-value=1.5e+02 Score=26.71 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCC--CCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKP--ENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~~--~~pDLVIlDl~m 73 (546)
..+|..||-++...+..+..++..|.. |. ...+..+.+..+.... ..||+|++|...
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~ 150 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK 150 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH
Confidence 468999999999999999999887653 43 5677777776654210 269999998753
No 359
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.13 E-value=88 Score=32.57 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=64.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEe
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLS 95 (546)
.+|+|+.-.. +...+.+.|...|+.|+.++.-.+.++.++. ..+.+|.-|.. -.++++.+. +..+|+++
T Consensus 5 ~~viIiG~Gr-~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--~g~~vi~GDat------~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 5 MRVIIAGFGR-FGQITGRLLLSSGVKMVVLDHDPDHIETLRK--FGMKVFYGDAT------RMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--TTCCCEESCTT------CHHHHHHTTTTTCSEEEEC
T ss_pred CeEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--CCCeEEEcCCC------CHHHHHhcCCCccCEEEEC
Confidence 5799998754 6778888898899999888877777787776 45677776643 245666653 66667666
Q ss_pred cCCChHH---HHHHHHcCCC-EEEeCCCCHHHH
Q 009017 96 NIHCLST---MMKCIALGAV-EFLRKPLSEDKL 124 (546)
Q Consensus 96 s~~d~e~---i~~Al~aGAd-DYL~KP~~~eeL 124 (546)
..++... +..+.+.+.. ..+.+-.+.+..
T Consensus 76 ~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~ 108 (413)
T 3l9w_A 76 IDDPQTNLQLTEMVKEHFPHLQIIARARDVDHY 108 (413)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence 5544332 3334456655 556665555433
No 360
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=31.10 E-value=2e+02 Score=29.25 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC----CCCCCHHHHHHHhC-----CCcEEEEecCCC
Q 009017 31 AELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETAK-----DLPTIITSNIHC 99 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~m----p~~~dGlellr~Lr-----~iPIIvLSs~~d 99 (546)
+.+..+-+..+..|. .+.+.+++..+... ..|.|.+..+- .....-++++..++ ++|||...+-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 345555455555544 45677777666655 58888885421 11013345555443 699999998889
Q ss_pred hHHHHHHHHcCCCEEEeC
Q 009017 100 LSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 100 ~e~i~~Al~aGAdDYL~K 117 (546)
..++.+++.+||+.+..=
T Consensus 292 ~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEeec
Confidence 999999999999998764
No 361
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=30.55 E-value=3.4e+02 Score=25.32 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+.. .+ +.++.+.. ..+|.||+-..... ..++++.++ .+|+|++...
T Consensus 38 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~---~~~~~~~~~~~~iPvV~~~~~ 109 (293)
T 2iks_A 38 IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ--RQVDAIIVSTSLPP---EHPFYQRWANDPFPIVALDRA 109 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSCT---TCHHHHTTTTSSSCEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCCC---cHHHHHHHHhCCCCEEEECCc
Confidence 345566667788999875542 22 34555655 56898887543222 123556665 6999988654
No 362
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=30.53 E-value=17 Score=22.46 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=5.2
Q ss_pred CCCCCCc
Q 009017 514 LGLKPPS 520 (546)
Q Consensus 514 ~glk~p~ 520 (546)
|||||++
T Consensus 14 lGLkplp 20 (21)
T 3plv_C 14 LGLKLIP 20 (26)
T ss_dssp TTCCCCC
T ss_pred cCCCCCC
Confidence 7888865
No 363
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.51 E-value=2.1e+02 Score=27.22 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCCEEEEEC----CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFY----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~as----s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+. +.+ +.++.+.. ..+|.||+...... ...+.++.++ .+|+|++...
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 91 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPT--AVIPTIKKALEMGIPVVTLDTD 91 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCeEEEeCCC
Confidence 34556666777899987653 232 24455555 56898887543222 1234556553 7999988654
No 364
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.46 E-value=1.1e+02 Score=30.00 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEe
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLS 95 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|-||+--.. .+ .+.++.+. .+|+|++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~---~~-~~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYDG---HT-EQTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECSC---CC-HHHHHHHHHCCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCC---CC-HHHHHHHHhCCCCEEEEC
Confidence 445666777788999876543 22 45555666 568877774221 12 24556554 79999884
No 365
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=30.43 E-value=2.5e+02 Score=26.76 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---CCcEEEEecCCC--hHH----HHHHHHcCCCEEEe
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHC--LST----MMKCIALGAVEFLR 116 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr---~iPIIvLSs~~d--~e~----i~~Al~aGAdDYL~ 116 (546)
++.+...+ ...|+|.+.. + -+++.++++. .+|||+..+-.. .+. +.+++++||+++..
T Consensus 170 ~~a~~a~~--~Gad~i~~~~--~---~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 170 HAARLGAE--LGADIVKTSY--T---GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHHHHHHH--TTCSEEEECC--C---SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHH--cCCCEEEECC--C---CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 34344455 4689888874 2 2577777765 799999877663 444 66777899998865
No 366
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=30.43 E-value=73 Score=30.93 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHhC-CCcEEEEecCC--ChH--HHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009017 79 SFKFLETAK-DLPTIITSNIH--CLS--TMMKCIALGAVEFLRKPLS--EDKLRNLWQHV 131 (546)
Q Consensus 79 Glellr~Lr-~iPIIvLSs~~--d~e--~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~v 131 (546)
|..+++.+. .+|+|+..... +.+ ......+.|. +++..+-+ .++|.++|..+
T Consensus 264 ~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 677788776 89998764321 211 1334556777 99998865 89998887654
No 367
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=29.96 E-value=48 Score=32.21 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCC
Q 009017 52 EALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL 119 (546)
Q Consensus 52 eALe~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~ 119 (546)
++++.+.+ ...|+|.+.....-. .+-+++++++| ++|+|+++...+ .+..|++++|.--+
T Consensus 24 ~~~~~l~~--~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n------~i~~gvDg~iipdL 86 (234)
T 2f6u_A 24 EIIKAVAD--SGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPS------NVVYDVDYLFVPTV 86 (234)
T ss_dssp HHHHHHHT--TTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCC------CCCCCSSEEEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCcc------hhhcCCCEEEEccc
Confidence 44555555 467888888743210 12467788887 799999998732 22789999998643
No 368
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=29.93 E-value=1.7e+02 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCCCeeEEE-EecCCCCCCC--HHHHHHHhC---CCcEEEEecCCChHHHHHHHH-cCCCEEEeC-----
Q 009017 50 ENEALSAFSDKPENFHVAI-VEVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIA-LGAVEFLRK----- 117 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDLVI-lDl~mp~~~d--Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~-aGAdDYL~K----- 117 (546)
..+..+.+.+ ...+.|| .|+.-.+... .+++++.++ .+|||.-.+-.+.+.+.++++ .|+++.+.=
T Consensus 454 ~~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEA--LGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHH--TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 3445555555 3455544 4554323112 267888886 799998777888999999998 899998764
Q ss_pred -CCCHHHHHHH
Q 009017 118 -PLSEDKLRNL 127 (546)
Q Consensus 118 -P~~~eeL~~~ 127 (546)
++...++.+.
T Consensus 532 ~~~~~~e~~~~ 542 (555)
T 1jvn_A 532 GEFTVNDVKEY 542 (555)
T ss_dssp TSCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 6676666654
No 369
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=29.91 E-value=2.2e+02 Score=27.13 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=54.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CH------H--HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NE------N--EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~------~--eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
+++|||..-...+...+...|.+.|++|..+. +. . +.+..+.. ....++..|+. +--.+.+.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~--~~v~~v~~D~~-----d~~~l~~a~~ 76 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS--MGVTIIEGEME-----EHEKMVSVLK 76 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH--TTCEEEECCTT-----CHHHHHHHHT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc--CCcEEEEecCC-----CHHHHHHHHc
Confidence 45799999888888888888888899877443 32 1 22333334 35677777764 2223445566
Q ss_pred CCcEEEEecC-----CChHHHHHHHHcC-CCEEE
Q 009017 88 DLPTIITSNI-----HCLSTMMKCIALG-AVEFL 115 (546)
Q Consensus 88 ~iPIIvLSs~-----~d~e~i~~Al~aG-AdDYL 115 (546)
.+-+|+.... .....+..|.+.| +.-|+
T Consensus 77 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 77 QVDIVISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred CCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 6666665432 1223344445566 66665
No 370
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=29.80 E-value=2.4e+02 Score=24.33 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=44.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC--EE-EEECCHHHHHHHhh--cCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY--IV-STFYNENEALSAFS--DKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy--~V-~~ass~~eALe~L~--~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|..||-++...+..+..+...++ .+ ....+..+.+..+. . ..||+|++|.-... .+..++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~fD~i~~~~~~~~-~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEK--LQFDLVLLDPPYAK-QEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTT--CCEEEEEECCCGGG-CCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcC--CCCCEEEECCCCCc-hhHHHHHHHH
Confidence 5899999999999988888877664 24 35667776555442 3 57999999854222 3344455544
No 371
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=29.73 E-value=2.5e+02 Score=28.07 Aligned_cols=76 Identities=8% Similarity=0.158 Sum_probs=49.0
Q ss_pred hCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCH----------HHHHHHh-------C-CCcEEEEe-cC
Q 009017 39 AMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGS----------FKFLETA-------K-DLPTIITS-NI 97 (546)
Q Consensus 39 ~~Gy~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~-~dG----------lellr~L-------r-~iPIIvLS-s~ 97 (546)
+.|+. +.++.+.++|..+... .+|+|++..-+... .-| .+.++.+ + ++.|+.-. .-
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 45655 5589999999888765 68999998764320 111 2233332 1 34333333 33
Q ss_pred CChHHHHHHHHc--CCCEEEeC
Q 009017 98 HCLSTMMKCIAL--GAVEFLRK 117 (546)
Q Consensus 98 ~d~e~i~~Al~a--GAdDYL~K 117 (546)
...+++..+++. |+++|+.-
T Consensus 238 stpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEES
T ss_pred CCHHHHHHHHhcCCCccEEEee
Confidence 678899999999 99999985
No 372
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=29.71 E-value=2e+02 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=29.1
Q ss_pred HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.++++.++ ..+++++|+.........+-..|...|+..
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 36788886 589999999877666666667898888865
No 373
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=29.69 E-value=2.5e+02 Score=28.50 Aligned_cols=83 Identities=8% Similarity=0.078 Sum_probs=52.8
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-----C---CcEEEEecCCChHHHHHHHHcCCCEEE
Q 009017 44 VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----D---LPTIITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 44 V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-----~---iPIIvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
+...-...+.++.+.. ..+|.|++|++-.- .+--.+.+.++ . .+++|=+...+...+..+++.|++.++
T Consensus 46 ~~l~i~~p~~~e~a~~--~GaD~vilDlEha~-~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIm 122 (339)
T 1izc_A 46 VAHGIPSTFVTKVLAA--TKPDFVWIDVEHGM-FNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIV 122 (339)
T ss_dssp EEECSCCHHHHHHHHH--TCCSEEEEETTTSC-CCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHh--CCCCEEEEECCCCC-CcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEE
Confidence 3333334455565555 56999999997654 34333333332 3 667777777788899999999998755
Q ss_pred eC-CCCHHHHHHHHH
Q 009017 116 RK-PLSEDKLRNLWQ 129 (546)
Q Consensus 116 ~K-P~~~eeL~~~I~ 129 (546)
.- =-+.+++...+.
T Consensus 123 lP~V~saee~~~~~~ 137 (339)
T 1izc_A 123 IPHVETVEEVREFVK 137 (339)
T ss_dssp ETTCCCHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 52 235677766544
No 374
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=29.64 E-value=1.6e+02 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=16.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHH
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENE 52 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~e 52 (546)
+|+|+.- ..+...+...|.+.|+.|+.++.-.+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~ 34 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE 34 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4555554 44455555555555665554443333
No 375
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=29.59 E-value=1.6e+02 Score=29.50 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=55.8
Q ss_pred EEEEeCCHHH----HHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHhC-CCcE
Q 009017 20 VLLLDQDSSA----AAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK-DLPT 91 (546)
Q Consensus 20 ILIVDDD~~~----~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~Lr-~iPI 91 (546)
|+|.|.+-.. .+.++.+-+..+. ..+.+.+.+++.+.+.. ..|+|.+|-.-+ +.+. +++.+. +++|
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~~~~---e~l~~~v~~~~~~~~I 255 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDNFNT---DQMREAVKRVNGQARL 255 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESSCCH---HHHHHHHHTTCTTCCE
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECCCCH---HHHHHHHHHhCCCCeE
Confidence 6666666554 3444444444444 34588899988888765 589999985211 1222 223333 4554
Q ss_pred EEEecCCChHHHHHHHHcCCCEEE
Q 009017 92 IITSNIHCLSTMMKCIALGAVEFL 115 (546)
Q Consensus 92 IvLSs~~d~e~i~~Al~aGAdDYL 115 (546)
..++.-+.+.+.+..+.|++.+-
T Consensus 256 -~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 256 -EVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp -EECCCSCHHHHHHHHHTTCSEEE
T ss_pred -EEECCCCHHHHHHHHHcCCCEEE
Confidence 45666689999999999996554
No 376
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=29.56 E-value=3.7e+02 Score=26.76 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=52.8
Q ss_pred HHHHHHHhhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEecC--------------------CCCCCCHHHHHHH
Q 009017 31 AELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVEVT--------------------TSNTDGSFKFLET 85 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~--~a---ss~~eALe~L~~~~~~pDLVIlDl~--------------------mp~~~dGlellr~ 85 (546)
+.++.+-+..+.-|. .+ .+.++|..+... ..|.|++..+ +.......+.++.
T Consensus 168 ~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~ 244 (349)
T 1p0k_A 168 KRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAE 244 (349)
T ss_dssp HHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHH
Confidence 444444444444433 23 466666555544 5787777521 1111344555555
Q ss_pred hC----CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 86 AK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 86 Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
++ ++|||...+-.+.+++.+++.+||+.+..=
T Consensus 245 v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 245 IRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 53 689999999899999999999999998764
No 377
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=29.53 E-value=1.3e+02 Score=27.92 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe-~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr 87 (546)
..+|..||-++...+..+..++..|+ +|. ...+..+.+. .+ . ..||+|++|..... -..+++.+.
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~--~~fD~V~~~~~~~~---~~~~l~~~~ 163 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D--KVYDMIFIDAAKAQ---SKKFFEIYT 163 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T--SCEEEEEEETTSSS---HHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c--CCccEEEEcCcHHH---HHHHHHHHH
Confidence 46899999999999999999988775 243 5666666555 44 3 57999999976433 344555543
No 378
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=29.48 E-value=92 Score=31.23 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-.......|... +++++ .++...+.+. .. . ..+-+.+ + --++++. .++-+|+
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~--~-~~~~~~~----~---~~~ll~~-~~vD~V~ 70 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RD--F-PDAEVVH----E---LEEITND-PAIELVI 70 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HH--C-TTSEEES----S---THHHHTC-TTCCEEE
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hh--C-CCCceEC----C---HHHHhcC-CCCCEEE
Confidence 4589999998765554355556554 78876 4443222211 11 1 1111111 1 1223321 1455555
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..=|+-||+ +.++..+.+..
T Consensus 71 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 111 (358)
T 3gdo_A 71 VTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRA 111 (358)
T ss_dssp ECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHH
Confidence 54433 367788999999999999995 46666654443
No 379
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.43 E-value=1.2e+02 Score=29.60 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEe
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLS 95 (546)
.+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--.. .+ -+.++.+. .+|+|++.
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdGiIi~~~~---~~-~~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS--WRPSGVIIAGLE---HS-EAARAMLDAAGIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSC---CC-HHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEECCC---CC-HHHHHHHHhCCCCEEEEe
Confidence 4456677777888999875543 2 234555666 578877774321 22 25555554 79999884
No 380
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=29.31 E-value=67 Score=30.16 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+.. . .+.++.+.. ..+|.||+....+. ...+.++.+. .+|+|++...
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLD--VLNPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHH--HHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCcEEEecCC
Confidence 345677777888999876542 2 345555555 56898887532111 1234556664 7999988653
No 381
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=29.19 E-value=2.3e+02 Score=28.96 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecC----CCCCCCHHHHHHHhC-----CCcEEEEecCCC
Q 009017 31 AELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVT----TSNTDGSFKFLETAK-----DLPTIITSNIHC 99 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~----mp~~~dGlellr~Lr-----~iPIIvLSs~~d 99 (546)
+.++.+-+..+..|+ .+.+.++|..+... ..|.|++.-+ +.....-++++..++ ++|||+-.+-.+
T Consensus 219 ~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~ 295 (368)
T 2nli_A 219 RDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRR 295 (368)
T ss_dssp HHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCS
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 344444444444433 56788888776655 5788888542 111023456665554 599999888899
Q ss_pred hHHHHHHHHcCCCEEEeC
Q 009017 100 LSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 100 ~e~i~~Al~aGAdDYL~K 117 (546)
..++.+++.+||+.+..=
T Consensus 296 g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 296 GEHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999998764
No 382
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=29.08 E-value=53 Score=31.99 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=37.1
Q ss_pred HHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCC
Q 009017 54 LSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (546)
Q Consensus 54 Le~L~~~~~~pDLVIlDl~mp~~-~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~ 120 (546)
++.+.+ ...|+|.+.....-. .+.+++++++| ++|||+++...+ .+..|++.||.--+.
T Consensus 26 ~~~l~~--~GaD~ielG~S~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~n------~i~~G~dg~iiPdLp 87 (240)
T 1viz_A 26 LEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIE------AIVPGFDLYFIPSVL 87 (240)
T ss_dssp HHHHHT--SCCSEEEECC----CHHHHHHHHHHHTTSSSCEEEECSCGG------GCCSCCSEEEEEEET
T ss_pred HHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhhCcCCCEEEecCccc------cccCCCCEEEEcccC
Confidence 444444 356777776632110 12577888887 799999988632 237899999987443
No 383
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=29.01 E-value=26 Score=33.24 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=25.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
..+|+|||-.......+.+.|++.|+.+..+.
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~ 55 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFP 55 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEE
Confidence 46899999877777778888999998877554
No 384
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=28.95 E-value=24 Score=35.25 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=56.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH--HHHHHhCC-CcEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF--KFLETAKD-LPTIIT 94 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl--ellr~Lr~-iPIIvL 94 (546)
|+|.||-......+.+.+.|++.|++|.......+. +. .+|+||+= + .||. ..++.+.. +||+-+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~---~~----~~DlvIvl----G-GDGT~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE---LE----NFDFIVSV----G-GDGTILRILQKLKRCPPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG---GG----GSSEEEEE----E-CHHHHHHHHTTCSSCCCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc---cC----CCCEEEEE----C-CCHHHHHHHHHhCCCCcEEEE
Confidence 578888542222778899999999998876543221 11 46888761 3 5662 33334434 888877
Q ss_pred ecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 95 Ss~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.. |-.+||. +++.+++..+|.+++.
T Consensus 98 N~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 98 NT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 64 4556666 4666777777777665
No 385
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=28.90 E-value=1.5e+02 Score=26.90 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=42.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy-~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.-||-++...+..+..++..|+ .+. ...+..+.+.. .. ..||+|++|.-... ....++++.+
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~--~~fD~V~~~~p~~~-~~~~~~l~~l 144 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KG--TPHNIVFVDPPFRR-GLLEETINLL 144 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CC--CCEEEEEECCSSST-TTHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-cC--CCCCEEEECCCCCC-CcHHHHHHHH
Confidence 3799999999999999999888775 344 44455543322 22 47999999865322 2333444443
No 386
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=28.66 E-value=1.9e+02 Score=27.71 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=37.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-----CHHHHHHHhhcCCCCeeEEEEecC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-----NENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-----s~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
++|||..-...+...|...|.+.|++|+.+. ...+.+..+... ....++..|+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~Dl~ 60 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIR 60 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT-CCCEEEECCTT
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccC-CceEEEEcCCC
Confidence 5899999999999999998888899988652 233344445431 23566666654
No 387
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=28.61 E-value=1.2e+02 Score=21.76 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=36.0
Q ss_pred cCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHH
Q 009017 306 QNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 355 (546)
Q Consensus 306 ~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqky 355 (546)
+..||+|=..+++++|++.|..+ =+.|-+.| +|=|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 45899999999999999999632 35566654 688888888887666
No 388
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=28.54 E-value=1.7e+02 Score=29.71 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 88 ~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
.+|+|++-...... +.++.|+ .++..+ +.++|.+++..++.
T Consensus 326 G~PvV~~~~~~~~~---e~v~~G~-~~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 326 GKPVLVMRETTERP---EAVAAGT-VKLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp TCCEEECCSSCSCH---HHHHHTS-EEECTT-CHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCcch---HHHHcCc-eEEcCC-CHHHHHHHHHHHHc
Confidence 79998753433332 3466785 466654 88999998888774
No 389
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=28.50 E-value=4.5e+02 Score=27.52 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=50.3
Q ss_pred HHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC-----------CCCCHHHHHHHh----C--CC
Q 009017 30 AAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----------NTDGSFKFLETA----K--DL 89 (546)
Q Consensus 30 ~~~L~~~Le~~-Gy~V~--~ass~~eALe~L~~~~~~pDLVIlDl~mp-----------~~~dGlellr~L----r--~i 89 (546)
.+.++.+-+.. ++.|. ...+.++|..+... ..|.|.+...-. + ...++++..+ + ++
T Consensus 266 ~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 266 IETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp HHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhcCC
Confidence 33444433333 34432 46677777555543 578888744211 1 1223333332 2 68
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
|||.-.+-.+...+.+++.+||+....
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999888888999999999999988764
No 390
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=28.21 E-value=1.2e+02 Score=30.46 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=37.4
Q ss_pred CEEEEEeCCHH----HHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVDDD~~----~~~~L~~~Le~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.||-++.. ..+.+++.+++.|.+|+. + .+....+..+.. ..+|+|++....++ +...+++.+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~~--~~~~~~~~~ 240 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYPQ--DQALFMNQF 240 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCHH--HHHHHHHHH
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccCc--hHHHHHHHH
Confidence 45655544443 334455555666777652 1 355566777766 56888887532221 345667776
Q ss_pred C
Q 009017 87 K 87 (546)
Q Consensus 87 r 87 (546)
+
T Consensus 241 ~ 241 (419)
T 3h5l_A 241 M 241 (419)
T ss_dssp T
T ss_pred H
Confidence 6
No 391
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=28.19 E-value=2.4e+02 Score=26.17 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHh----CCCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETA----KDLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~L----r~iPI 91 (546)
+.+|||..-..-+...+...|.+.|++|+.+....+.++.+.........+-+|+. + .+.+ ++++.+ ..+-+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~--~-~~~v~~~~~~~~~~~g~id~ 78 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVA--D-PLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTT--S-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeEEeeCC--C-HHHHHHHHHHHHHHcCCCCE
Confidence 35789999999999999999999999988554444444444331123445555554 3 2232 344444 25666
Q ss_pred EEEec
Q 009017 92 IITSN 96 (546)
Q Consensus 92 IvLSs 96 (546)
++-.+
T Consensus 79 lv~nA 83 (247)
T 3dii_A 79 LVNNA 83 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66544
No 392
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=28.06 E-value=64 Score=32.01 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH---HHh-----CC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL---ETA-----KD 88 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlell---r~L-----r~ 88 (546)
|+||.||.--..+.......|...+.+++.+.+.......+.. ..++.-+.+ +--+++ +.| .+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~--~~~~~~~~~-------~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDS--ISPQSEFFT-------EFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGG--TCTTCEEES-------SHHHHHHHHHHHTTSTTTS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHh--hCCCCcEEC-------CHHHHHHhhhhhhhccCCC
Confidence 5799999873222333444444557777644433222222222 112222221 122333 222 24
Q ss_pred CcEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 89 LPTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 89 iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
+-+|+++... -.+.+..|+++|..=|+-||+ +.++..+.++.
T Consensus 74 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 119 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVI 119 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 6666665443 467788999999999999995 56776665543
No 393
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.00 E-value=1.1e+02 Score=22.63 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=36.0
Q ss_pred CCcCccchhhhhhHHHHHHHhcCCCCChHHHHHHhCCCCccHHHHHHHHHHH
Q 009017 304 GLQNSCGNKANRKKMKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 355 (546)
Q Consensus 304 ~~~~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m~v~~l~~~~v~shlqky 355 (546)
..+-.||+|=.++++++|++.|..+ =+.|-+.| +|=|-.+++.+-++|
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4456899999999999999999532 24555654 688888888776655
No 394
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=27.80 E-value=1.8e+02 Score=28.17 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=48.4
Q ss_pred CEEEEE-e-CCHH---HHHHHHHHHhhCCCEEEE--E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLL-D-QDSS---AAAELKFKLEAMDYIVST--F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIV-D-DD~~---~~~~L~~~Le~~Gy~V~~--a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.|| + ++.. ..+.+++.|++.|..+.. + .+....+..+.. ..+|+|++... + .+...+++.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~~--~-~~a~~~~~~~ 224 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS--FNPDAIYITGY--Y-PEIALISRQA 224 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH--TCCSEEEECSC--H-HHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh--cCCCEEEEccc--h-hHHHHHHHHH
Confidence 477777 4 4433 235567777888887652 2 345567777776 57999999532 2 3455667766
Q ss_pred C----CCcEEEEecCCChHHH
Q 009017 87 K----DLPTIITSNIHCLSTM 103 (546)
Q Consensus 87 r----~iPIIvLSs~~d~e~i 103 (546)
+ .+|+|......+.+..
T Consensus 225 ~~~g~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 225 RQLGFTGYILAGDGADAPELI 245 (366)
T ss_dssp HHTTCCSEEEECGGGCSTHHH
T ss_pred HHcCCCceEEeeCCcCCHHHH
Confidence 5 5666544444444333
No 395
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=27.79 E-value=95 Score=31.25 Aligned_cols=101 Identities=10% Similarity=0.130 Sum_probs=56.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-.......|... +++++ .++...+... .. .+.+-+. .+--++++. .++-+|+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~---~~~~~~~-------~~~~~ll~~-~~~D~V~ 72 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RD---LPDVTVI-------ASPEAAVQH-PDVDLVV 72 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--HH---CTTSEEE-------SCHHHHHTC-TTCSEEE
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hh---CCCCcEE-------CCHHHHhcC-CCCCEEE
Confidence 3589999998765554355555554 78876 4443333222 11 1111111 122223321 1455555
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
++... -.+.+..|+++|..=|+-||+ +.++....++
T Consensus 73 i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 112 (364)
T 3e82_A 73 IASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIA 112 (364)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHH
Confidence 54433 367788999999999999997 4566655444
No 396
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=27.70 E-value=1.4e+02 Score=30.07 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=18.0
Q ss_pred cCCCCCCEEEEEeCCHHHHH-HHHHHHhhCCCEEE
Q 009017 12 KDFPKGLRVLLLDQDSSAAA-ELKFKLEAMDYIVS 45 (546)
Q Consensus 12 ~~m~~~~rILIVDDD~~~~~-~L~~~Le~~Gy~V~ 45 (546)
..+|+.+||+++.. +.+.. .|..++ +.+++|+
T Consensus 17 ~~~~~~mrIvf~G~-~~fa~~~L~~L~-~~~~~i~ 49 (329)
T 2bw0_A 17 NLYFQSMKIAVIGQ-SLFGQEVYCHLR-KEGHEVV 49 (329)
T ss_dssp ----CCCEEEEECC-HHHHHHHHHHHH-HTTCEEE
T ss_pred cccCCCCEEEEEcC-cHHHHHHHHHHH-HCCCeEE
Confidence 34556689999964 55554 455544 4578765
No 397
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.69 E-value=1.3e+02 Score=28.33 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|-||+-..... .-.+.++.++ .+|+|++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQ--QKVDVLLINPVDSD--AVVTAIKEANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCCchh--hhHHHHHHHHHCCCeEEEecC
Confidence 344556667778999876542 22 34555555 57898887432211 1124556554 799998854
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=27.68 E-value=71 Score=33.57 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=22.4
Q ss_pred ChHHHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 009017 330 IPSRILELMKVEGLTRHNVASHLQKYRMHRRH 361 (546)
Q Consensus 330 ~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~~ 361 (546)
-++++.++-.=.|.+...|..=|..|....+.
T Consensus 395 ~~sr~~ria~gsg~~~~~v~~l~~~~~~~~~~ 426 (433)
T 2xxa_A 395 KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRM 426 (433)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 34566666666788888888888877766543
No 399
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=27.67 E-value=1.5e+02 Score=28.70 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-----CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-----YIV-STFYNENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-----y~V-~~ass~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
..+|..||-++...+..++.+...+ -++ +...++.+.+... . ..||+||+|...+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fD~Ii~d~~~~ 162 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T--NTYDVIIVDSSDP 162 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C--SCEEEEEEECCCT
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-C--CCceEEEEcCCCC
Confidence 3589999999999988888876431 123 3566777665543 3 5799999997654
No 400
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=27.61 E-value=1.2e+02 Score=30.40 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=49.4
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC--CCCCCHHHHHHHhC---CCcEEEEecCCCh-------------H
Q 009017 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT--SNTDGSFKFLETAK---DLPTIITSNIHCL-------------S 101 (546)
Q Consensus 41 Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~m--p~~~dGlellr~Lr---~iPIIvLSs~~d~-------------e 101 (546)
.+.+. ++.+.++++...+.. .|-|=++-.+ ++...+..+++.++ ++||.+|.-.... +
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gG---AdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~ 115 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGG---ADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKA 115 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHT---CSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhC---CCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHH
Confidence 35544 688899988888762 3434333333 22123567777765 6898888654443 5
Q ss_pred HHHHHHHcCCCEEEeCC
Q 009017 102 TMMKCIALGAVEFLRKP 118 (546)
Q Consensus 102 ~i~~Al~aGAdDYL~KP 118 (546)
++..+.++||++++.=-
T Consensus 116 dI~~~~~~GAdGvVfG~ 132 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGA 132 (287)
T ss_dssp HHHHHHHTTCSEEEECC
T ss_pred HHHHHHHcCCCEEEEee
Confidence 77888999999998873
No 401
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.59 E-value=2.1e+02 Score=26.91 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+--.... + ++++.+. .+|+|++...
T Consensus 30 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~--~--~~~~~l~~~~iPvV~i~~~ 100 (295)
T 3hcw_A 30 VLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ--RMVDAFILLYSKEN--D--PIKQMLIDESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT--TCCSEEEESCCCTT--C--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh--CCcCEEEEcCcccC--h--HHHHHHHhCCCCEEEECCC
Confidence 3455666677889998765532 235566666 67888887432212 1 4555554 7999988654
No 402
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=27.53 E-value=57 Score=30.88 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=62.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC----EEE-EECCHHHH--------------HHH-------hhcCCCCeeEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY----IVS-TFYNENEA--------------LSA-------FSDKPENFHVAIVE 70 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy----~V~-~ass~~eA--------------Le~-------L~~~~~~pDLVIlD 70 (546)
.-+|.-||.|+...+..+..|++.|+ +|. ...+..++ +.. +.. ...||+||+|
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~-~~~fDlIfID 129 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEG-FRHPDVVLVD 129 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTT-CCCCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcccc-CCCCCEEEEe
Confidence 35899999999999999999999886 443 33342221 111 111 1479999999
Q ss_pred cCCCCCCCHHHHHHHhCCCcEEEEec---CCChHHHHHHHHc----C-CCEEEeCC--CCHHHHHHHHHH
Q 009017 71 VTTSNTDGSFKFLETAKDLPTIITSN---IHCLSTMMKCIAL----G-AVEFLRKP--LSEDKLRNLWQH 130 (546)
Q Consensus 71 l~mp~~~dGlellr~Lr~iPIIvLSs---~~d~e~i~~Al~a----G-AdDYL~KP--~~~eeL~~~I~~ 130 (546)
-.-.. .--...++.++.--+|++-. ......+.+.++. | ..-|-.+| ++.+.|...+..
T Consensus 130 g~k~~-~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~ 198 (202)
T 3cvo_A 130 GRFRV-GCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRT 198 (202)
T ss_dssp SSSHH-HHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHH
T ss_pred CCCch-hHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHH
Confidence 64211 00112345566544555533 2333444455542 2 34455555 556666655543
No 403
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=27.37 E-value=51 Score=32.62 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHHhC----CCcEEEEec------CCChHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 79 SFKFLETAK----DLPTIITSN------IHCLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 79 Glellr~Lr----~iPIIvLSs------~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
.+++++++| ++|||+|+= +.-...+.+|.++|++++|.--+..++...
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~ 141 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQP 141 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 356777775 589999873 233557888999999999997777766443
No 404
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=27.31 E-value=1.1e+02 Score=29.52 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=48.2
Q ss_pred CEEEEE-eCCHHH---HHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLL-DQDSSA---AAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIV-DDD~~~---~~~L~~~Le~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.+| +++... .+.+++.|++.|..+.. + .+...++..+.. ..+|+||+.... .....+++.+
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~d~i~~~~~~---~~a~~~~~~~ 214 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED--EAPQAIYLAMAY---EDAAPFLRAL 214 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HCCSEEEEESCH---HHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh--cCCCEEEEccCc---hHHHHHHHHH
Confidence 356655 444432 34566677788887652 2 355667777766 568999986432 1345666666
Q ss_pred C----CCcEEEEecCCChHHH
Q 009017 87 K----DLPTIITSNIHCLSTM 103 (546)
Q Consensus 87 r----~iPIIvLSs~~d~e~i 103 (546)
+ .+|+|......+.+..
T Consensus 215 ~~~g~~~p~~~~~~~~~~~~~ 235 (358)
T 3hut_A 215 RARGSALPVYGSSALYSPKFI 235 (358)
T ss_dssp HHTTCCCCEEECGGGCSHHHH
T ss_pred HHcCCCCcEEecCcccCHHHH
Confidence 5 6777655544454443
No 405
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=27.28 E-value=1.1e+02 Score=29.90 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvL 94 (546)
++++|.||.--..-...+..+.+..+++++ .++...+..+.+.. . .. .. .+--++++. .++-+|++
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~--~-~~--~~-------~~~~~~l~~-~~~D~V~i 75 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP--G-CV--IE-------SDWRSVVSA-PEVEAVII 75 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT--T-CE--EE-------SSTHHHHTC-TTCCEEEE
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh--h-Cc--cc-------CCHHHHhhC-CCCCEEEE
Confidence 357999998754433333333333467765 44444444444443 2 11 11 111233321 14555555
Q ss_pred ecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 95 SNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 95 Ss~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+... -.+.+..|+++|..-|+-||+ +.++....++
T Consensus 76 ~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~ 114 (315)
T 3c1a_A 76 ATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAA 114 (315)
T ss_dssp ESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHH
Confidence 4433 356788899999988999997 4555555433
No 406
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=27.19 E-value=49 Score=32.74 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEE-EEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVA-IVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLV-IlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++++|.||.--..-...+..+....+++++ .++...+..+.+.. .+.+. .. .+--+++.. .++-+|+
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~---~~~~~~~~-------~~~~~ll~~-~~~D~V~ 72 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN---KYHLPKAY-------DKLEDMLAD-ESIDVIY 72 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC------CCCCSCEE-------SCHHHHHTC-TTCCEEE
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH---HcCCCccc-------CCHHHHhcC-CCCCEEE
Confidence 458999998876554444444444467766 33322221111111 12210 00 122233321 1455565
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 73 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~ 113 (329)
T 3evn_A 73 VATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFAL 113 (329)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHH
Confidence 54433 3567889999999999999974 5666554443
No 407
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=27.19 E-value=88 Score=30.10 Aligned_cols=82 Identities=16% Similarity=0.045 Sum_probs=48.8
Q ss_pred CEEEEEe-CCHH---HHHHHHHHHhhCCCEEE---EE----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 18 LRVLLLD-QDSS---AAAELKFKLEAMDYIVS---TF----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 18 ~rILIVD-DD~~---~~~~L~~~Le~~Gy~V~---~a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
.+|.+|. ++.. ..+.+++.|++.|..++ .+ .+....+..+.. ..+|+|++... + .....+++.+
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~dav~~~~~--~-~~a~~~~~~~ 210 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA--ANPDAILVGAS--G-TAAALPQTTL 210 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH--HCCSEEEEECC--H-HHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh--cCCCEEEEecC--c-chHHHHHHHH
Confidence 3566554 4432 34556777788888754 22 244566666666 56899988542 2 3355666666
Q ss_pred C----CCcEEEEecCCChHHHH
Q 009017 87 K----DLPTIITSNIHCLSTMM 104 (546)
Q Consensus 87 r----~iPIIvLSs~~d~e~i~ 104 (546)
+ .+|+|.+.+..+.+...
T Consensus 211 ~~~g~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 211 RERGYNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp HHTTCCSEEEECGGGCSHHHHH
T ss_pred HHcCCCccEEeccCcCcHHHHH
Confidence 5 57776666666654443
No 408
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=27.18 E-value=3e+02 Score=24.07 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=30.8
Q ss_pred HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCH
Q 009017 80 FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSE 121 (546)
Q Consensus 80 lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~ 121 (546)
.++++.++ .++++++|+.........+-..|..+|+....+.
T Consensus 41 ~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k 84 (180)
T 1k1e_A 41 GLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEK 84 (180)
T ss_dssp HHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCH
T ss_pred HHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCc
Confidence 36677776 6899999998776666666678998888654443
No 409
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.16 E-value=93 Score=28.72 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCEEEEECCH---H---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE---N---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~---~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
+...+.+.+++.||.+..+... + +.++.+.. ..+|-||+--..+. ..+.++.++ .+|+|++....
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~~~~~~~iPvV~~~~~~ 92 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPP---EDDSYRELQDKGLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCS---SCCHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccc---cHHHHHHHHHcCCCEEEEccCC
Confidence 3455666777889998755432 2 34556666 57888887543322 123444443 79999886543
No 410
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=27.05 E-value=1.5e+02 Score=26.98 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=41.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe~L~~~~--~~pDLVIlDl~ 72 (546)
..+|..||-++...+..++.++..|. .+. ...+..+.+..+.... ..||+|++|..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 46899999999999999999887765 343 5667777666553210 26999999865
No 411
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.91 E-value=2.2e+02 Score=25.10 Aligned_cols=90 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHh-hcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~~eALe~L-~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iP 90 (546)
+..|.++|.++...+. +...|+.+...+ +..+.+..+ .- ...|+||+-+.-.. .-..++..++ ...
T Consensus 63 g~~V~vid~~~~~~~~----~~~~g~~~~~gd~~~~~~l~~~~~~--~~ad~vi~~~~~~~--~~~~~~~~~~~~~~~~~ 134 (183)
T 3c85_A 63 GKISLGIEIREEAAQQ----HRSEGRNVISGDATDPDFWERILDT--GHVKLVLLAMPHHQ--GNQTALEQLQRRNYKGQ 134 (183)
T ss_dssp CSCEEEEESCHHHHHH----HHHTTCCEEECCTTCHHHHHTBCSC--CCCCEEEECCSSHH--HHHHHHHHHHHTTCCSE
T ss_pred CCeEEEEECCHHHHHH----HHHCCCCEEEcCCCCHHHHHhccCC--CCCCEEEEeCCChH--HHHHHHHHHHHHCCCCE
Q ss_pred EEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 91 IIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
||+.+. +........+.|++..+.
T Consensus 135 ii~~~~--~~~~~~~l~~~G~~~vi~ 158 (183)
T 3c85_A 135 IAAIAE--YPDQLEGLLESGVDAAFN 158 (183)
T ss_dssp EEEEES--SHHHHHHHHHHTCSEEEE
T ss_pred EEEEEC--CHHHHHHHHHcCCCEEEc
No 412
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.87 E-value=2.4e+02 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~as---s~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+. +. .+.++.+.. ..+|.||+--.. .+ -+.++.++ .+|+|++...
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~---~~-~~~~~~l~~~~iPvV~~~~~ 91 (275)
T 3d8u_A 21 FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLE--SRPAGVVLFGSE---HS-QRTHQLLEASNTPVLEIAEL 91 (275)
T ss_dssp HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHT--SCCCCEEEESSC---CC-HHHHHHHHHHTCCEEEESSS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHh--cCCCEEEEeCCC---CC-HHHHHHHHhCCCCEEEEeec
Confidence 44556677778899976443 22 234556666 568866664321 12 24555554 7999988653
No 413
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=26.85 E-value=1.5e+02 Score=27.86 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp 74 (546)
..+|..||-++...+..+..++..|+. |. ...+..+.+..+... ..||+|++|....
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~-~~fD~V~~d~~~~ 147 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGEC-PAFDLIFIDADKP 147 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSC-CCCSEEEECSCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCC-CCeEEEEECCchH
Confidence 468999999999999999999887753 44 567777766655321 3799999997543
No 414
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=26.78 E-value=68 Score=26.75 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=39.4
Q ss_pred CccchhhhhhHHHHHHHhcCCCCChHHHHHHh-CCCCccHHHHHHHHHHHHhhh
Q 009017 307 NSCGNKANRKKMKAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYRMHR 359 (546)
Q Consensus 307 ~~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m-~v~~l~~~~v~shlqkyr~~~ 359 (546)
..||.+=.+.|++|+.++|.+ +|.+--.+- -|+|=|-.+|+.|-+++.-..
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKD--TPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 379999999999999999965 565433332 347999999999998876443
No 415
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=26.76 E-value=46 Score=32.85 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHhC----CCcEEEEecCC------ChHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 80 FKFLETAK----DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 80 lellr~Lr----~iPIIvLSs~~------d~e~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
+++++.+| ++||++|+-.+ -...+.++.++|++++|.-.+..++...
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~ 139 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAP 139 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHH
Confidence 56666665 58999987432 2557888999999999998777776444
No 416
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.71 E-value=2e+02 Score=27.04 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+.+.+++.||.+..+.. . .+.++.+.. ..+|-||+--. . .+ -+.++.+. .+|+|++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~-~~~~~~l~~~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG--N-IT-DEHVAEFKRSPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--C-CC-HHHHHHHHHSSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC--C-CC-HHHHHHHHhcCCCEEEEccc
Confidence 345566677788999775532 2 235566666 57898877432 1 12 23455553 7999988653
No 417
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.68 E-value=1.2e+02 Score=29.35 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|-||+--.... ..-++.++....+|+|++...
T Consensus 76 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 147 (340)
T 1qpz_A 76 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 147 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecc
Confidence 345566677788999876542 22 23555655 57888887432111 112333333347999988653
No 418
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=26.63 E-value=73 Score=30.31 Aligned_cols=68 Identities=10% Similarity=-0.067 Sum_probs=42.1
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecC---C-CCCCCHHHHHHHhC---CCcEE--EEecCCChHHHHHHHHcCCCEEEeCCC
Q 009017 49 NENEALSAFSDKPENFHVAIVEVT---T-SNTDGSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLRKPL 119 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~---m-p~~~dGlellr~Lr---~iPII--vLSs~~d~e~i~~Al~aGAdDYL~KP~ 119 (546)
+..+.++.+.+ ...|+|=+|+. . |....|.++++.|| +.++. +++.. ....+..+.++||+.+..-..
T Consensus 18 ~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 44555666655 34555555542 1 12124678898887 45666 67743 344678899999999877655
No 419
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=26.59 E-value=34 Score=33.13 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhC-CCccCCCC--------------CCCCchhHHHHHHHHcCCCCC
Q 009017 494 EEVIDKVVKEAISK-PWLPLPLG--------------LKPPSADSVLAELSRQGISTI 536 (546)
Q Consensus 494 ~e~~d~~~~~~~~~-p~~p~p~g--------------lk~p~~~~v~~el~~~g~~~~ 536 (546)
.+.|++....+=.+ |+.|.=++ +..|+++.++.+|.++|+..|
T Consensus 25 ~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~i 82 (269)
T 2xvy_A 25 RPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHV 82 (269)
T ss_dssp THHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEE
Confidence 34555544433322 66676666 899999999999999999864
No 420
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.58 E-value=94 Score=29.36 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HH---HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVSTFYNE------NE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass~------~e---ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
+...+...+++.||.+..+... .+ .++.+.. ..+|.||+--.. .+ -+.++.++ .+|+|++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~---~~-~~~~~~l~~~~iPvV~~~~~ 99 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHD---LH-DEDLDELHRMHPKMVFLNRA 99 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSS---SC-HHHHHHHHHHCSSEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCC---CC-HHHHHHHhhcCCCEEEEccc
Confidence 4455666777889998765431 23 5666666 578988875322 22 24455554 7999988653
No 421
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=26.57 E-value=73 Score=30.59 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=38.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC--------CHHHHHHHhhcCCCCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY--------NENEALSAFSDKPENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as--------s~~eALe~L~~~~~~pDLVIlDl~m 73 (546)
+++|||..-...+...|...|.+.|++|+.+. +.++..+.+.. ..+|+||--...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~--~~~d~vih~a~~ 65 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFAS--ERIDQVYLAAAK 65 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHH--HCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHh--cCCCEEEEcCee
Confidence 46899999999999999999988899877543 23333334442 246777765543
No 422
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=26.46 E-value=1.3e+02 Score=30.74 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
+++|||+.... ....+...+++.||+|+.+..
T Consensus 19 ~~~ili~g~g~-~g~~~~~a~~~~G~~v~~v~~ 50 (433)
T 2dwc_A 19 AQKILLLGSGE-LGKEIAIEAQRLGVEVVAVDR 50 (433)
T ss_dssp CCEEEEESCSH-HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence 46899998875 444556667789999876543
No 423
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=26.42 E-value=1.3e+02 Score=29.92 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=23.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
+++|||+.... ....+...+++.||+|..+..
T Consensus 11 ~~~ili~g~g~-~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 11 ATRVMLLGSGE-LGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp CCEEEEESCSH-HHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEC
Confidence 46999998865 445666777889999876554
No 424
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=26.39 E-value=80 Score=33.78 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.++.+.+ ..+|+|.+|...+. .. -+++++.++ +++||+ ..-.+.+.+..+.++||+.++.
T Consensus 233 ~~~a~~l~~--aG~d~I~id~a~g~-~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE--AGVDVLLIDSSHGH-SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTT-SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--ccCceEEecccccc-chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444444 46899999988765 32 356777775 567765 3345678889999999998875
No 425
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=26.21 E-value=77 Score=31.41 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECC-----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass-----~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iP 90 (546)
++||.||.--......+. .| ..+++++ .++. .+.+.+.+.+ ..++.-.. .+--+++.. .++-
T Consensus 2 ~~rvgiiG~G~~~~~~~~-~l-~~~~~lvav~d~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~ll~~-~~vD 69 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALE-GL-DEECSITGIAPGVPEEDLSKLEKAISE--MNIKPKKY-------NNWWEMLEK-EKPD 69 (337)
T ss_dssp CEEEEEECSSSCHHHHHT-TC-CTTEEEEEEECSSTTCCCHHHHHHHHT--TTCCCEEC-------SSHHHHHHH-HCCS
T ss_pred ceEEEEEccchhHHHHHH-hc-CCCcEEEEEecCCchhhHHHHHHHHHH--cCCCCccc-------CCHHHHhcC-CCCC
Confidence 478888885433332232 23 4567766 3431 1233333333 12211111 122334442 1445
Q ss_pred EEEEecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 91 IIvLSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
+|+++... -.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 70 ~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 113 (337)
T 3ip3_A 70 ILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSV 113 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred EEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 55554432 3467889999999999999975 4566655443
No 426
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.21 E-value=1e+02 Score=29.30 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhccc
Q 009017 346 HNVASHLQKYRMHRRHI 362 (546)
Q Consensus 346 ~~v~shlqkyr~~~~~~ 362 (546)
..+..+|++||.+++..
T Consensus 199 ~~~~~~~~~~~~~L~~~ 215 (218)
T 3rpe_A 199 PDIEGDIARYRQHLAEN 215 (218)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35788999999887654
No 427
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=26.12 E-value=1.2e+02 Score=28.26 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCCeeE-EEEecCCCCCC--CHHHHHHHhC---CCcEEEEecCCChHHHHHHHHc---CCCEEEeC
Q 009017 50 ENEALSAFSDKPENFHV-AIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL---GAVEFLRK 117 (546)
Q Consensus 50 ~~eALe~L~~~~~~pDL-VIlDl~mp~~~--dGlellr~Lr---~iPIIvLSs~~d~e~i~~Al~a---GAdDYL~K 117 (546)
..+.++.+.. ..++. ++.+..-.+.. -.++++++++ ++|||+..+-.+.+.+.++++. ||+.++.=
T Consensus 151 ~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 151 LWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp HHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred HHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 4555555555 45674 45665543211 2467777775 6899998888888999999998 99988753
No 428
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=26.12 E-value=1.5e+02 Score=29.12 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 80 lellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
.+++++++ ++||++=.+-.+.+.+.++ .|||..++=
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 46777776 6898877777778888875 999999975
No 429
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=25.84 E-value=1.7e+02 Score=30.21 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=48.8
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHhC-----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 46 TFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 46 ~ass~~eALe~L~~~~~~pDLVIlDl~mp----~~~dGlellr~Lr-----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.+.++|..+... .+|.|++.-.-. ....-++++..++ ++|||+-.+-.+..++.+++.+||+....
T Consensus 259 gv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 259 GILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFV 335 (392)
T ss_dssp EECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred ecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEE
Confidence 46788887776655 589888854311 1022355555543 59999888888999999999999998865
Q ss_pred C
Q 009017 117 K 117 (546)
Q Consensus 117 K 117 (546)
=
T Consensus 336 G 336 (392)
T 2nzl_A 336 G 336 (392)
T ss_dssp C
T ss_pred C
Confidence 3
No 430
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=25.80 E-value=1.5e+02 Score=26.64 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
+.+|.+.. .......+...+...|+ ++..+.+..+++..+.. ...|+++.|.
T Consensus 148 g~~i~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 201 (259)
T 2v25_A 148 GANIGVAQ-AATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA--KRVDAFSVDK 201 (259)
T ss_dssp TCEEEEET-TCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCEEEEec-CCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc--CCCcEEEecH
Confidence 46777764 44456677777877765 67789999999999999 7899999875
No 431
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.76 E-value=1.5e+02 Score=27.74 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCEEEEE-CCHH------HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTF-YNEN------EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~a-ss~~------eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+...+++.||.+..+ .+.. +.++.+.. ..+|.||+-..... . +.++.++ .+|+|++..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~---~~~~~l~~~~iPvV~~~~ 96 (290)
T 3clk_A 26 ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE--RPVMGILLLSIALT-D---DNLQLLQSSDVPYCFLSM 96 (290)
T ss_dssp HHHHHHHHHHTTTCEEEEEC----------CHHHHHHS--SCCSEEEEESCC--------CHHHHHCC--CEEEESC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEecccCC-H---HHHHHHHhCCCCEEEEcC
Confidence 4455667777889998766 4321 24566666 56887776432222 1 3344443 689988854
No 432
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=25.71 E-value=50 Score=30.09 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=27.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
++|+|+|-.......+ +.|++.|+++..+...++ +. .+|.||+
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~~~----l~----~~d~iil 44 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRPEQ----LN----EVDGLIL 44 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSGGG----GG----GCSEEEE
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCChHH----Hh----hCCEEEE
Confidence 6899997533333333 778888988887776331 22 3677766
No 433
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=25.70 E-value=50 Score=32.22 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCeeEEEEecCCCCC-CCHHHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeC
Q 009017 62 ENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (546)
Q Consensus 62 ~~pDLVIlDl~mp~~-~dGlellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~K 117 (546)
...|+|++.....-. .+-++++++|| ++|+|++.... ..+..|||.||.-
T Consensus 35 ~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 35 SQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp SSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred cCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 457999998764220 23567788887 79999998854 2345699999875
No 434
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=25.63 E-value=37 Score=31.23 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=30.0
Q ss_pred CCEEEEEeCCHHHH-HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 009017 17 GLRVLLLDQDSSAA-AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (546)
Q Consensus 17 ~~rILIVDDD~~~~-~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIl 69 (546)
|++|+|++.+.... ..+.+.|+..|+++..+...+ .- ..+|.||+
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~------~~--~~~d~lil 47 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD------KL--DDYELIIL 47 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC------CC--SSCSEEEE
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC------Cc--ccCCEEEE
Confidence 46899998765542 456788888899988776431 11 34677766
No 435
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=25.63 E-value=1e+02 Score=31.95 Aligned_cols=107 Identities=7% Similarity=0.025 Sum_probs=57.0
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCe---eEEEEecCCCCCCCHHHHHHHhCC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENF---HVAIVEVTTSNTDGSFKFLETAKD 88 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~-~ass~~eALe~L~~~~~~p---DLVIlDl~mp~~~dGlellr~Lr~ 88 (546)
.+++++|.||.--..-...+...|... +++++ .++...+..+.+.+. ... ++.+. .+--++++. .+
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~~~~-------~~~~~ll~~-~~ 150 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE-YGVDPRKIYDY-------SNFDKIAKD-PK 150 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH-TTCCGGGEECS-------SSGGGGGGC-TT
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCccccccc-------CCHHHHhcC-CC
Confidence 455689999998655542444455443 67765 454333333333220 111 11111 111112111 14
Q ss_pred CcEEEEecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHH
Q 009017 89 LPTIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQ 129 (546)
Q Consensus 89 iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~ 129 (546)
+-+|+++... -.+.+..|+++|..=|+-||+ +.++....++
T Consensus 151 vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 195 (433)
T 1h6d_A 151 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMID 195 (433)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHH
T ss_pred CCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHH
Confidence 5566655433 357788899999999999997 4555554444
No 436
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=25.60 E-value=1e+02 Score=31.94 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=48.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHH----HhCC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLE----TAKD 88 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~---V~-~ass~~eALe-~L~~~~~~pDLVIlDl~mp~~~dGlellr----~Lr~ 88 (546)
-+|..||-++...+.+++-++..|.. +. ...+..+.+. .+ . ..||+|++|. ++ . ..++++ .++.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~--~~fD~V~lDP--~g-~-~~~~l~~a~~~Lk~ 150 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-G--FGFDYVDLDP--FG-T-PVPFIESVALSMKR 150 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-S--SCEEEEEECC--SS-C-CHHHHHHHHHHEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-C--CCCcEEEECC--Cc-C-HHHHHHHHHHHhCC
Confidence 47999999999999999999988763 44 4556666554 33 2 4699999997 33 2 123333 3443
Q ss_pred CcEEEEec
Q 009017 89 LPTIITSN 96 (546)
Q Consensus 89 iPIIvLSs 96 (546)
--+|++|.
T Consensus 151 gGll~~t~ 158 (392)
T 3axs_A 151 GGILSLTA 158 (392)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEe
Confidence 33666666
No 437
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=25.53 E-value=2.7e+02 Score=26.24 Aligned_cols=73 Identities=7% Similarity=-0.010 Sum_probs=45.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCC-CEEEEE-CCHHHH-HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTF-YNENEA-LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~G-y~V~~a-ss~~eA-Le~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
+++|||..-...+...+...|.+.| ++|..+ .+.... ...+.. ....++..|+. +--.+.+.+..+-+|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~--~~~~~~~~D~~-----d~~~l~~~~~~~d~vi 77 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRL--QGAEVVQGDQD-----DQVIMELALNGAYATF 77 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHH--TTCEEEECCTT-----CHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHH--CCCEEEEecCC-----CHHHHHHHHhcCCEEE
Confidence 4689999998888888888887777 998744 332221 233333 34677777764 2223444556666666
Q ss_pred Eec
Q 009017 94 TSN 96 (546)
Q Consensus 94 LSs 96 (546)
...
T Consensus 78 ~~a 80 (299)
T 2wm3_A 78 IVT 80 (299)
T ss_dssp ECC
T ss_pred EeC
Confidence 544
No 438
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.51 E-value=60 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=37.0
Q ss_pred ccchhhhhhHHHHHHHhcCCCCChHHHHHHh-CCCCccHHHHHHHHHHH
Q 009017 308 SCGNKANRKKMKAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKY 355 (546)
Q Consensus 308 ~~~~~lh~~f~~av~~lg~~~a~p~~i~~~m-~v~~l~~~~v~shlqky 355 (546)
.||.+=.++|.+|+..++.+ +|.+--.+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~--tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKH--KPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSS--SSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCC--CccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 69999999999999988754 788765543 47899999999876654
No 439
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=25.42 E-value=1.5e+02 Score=27.87 Aligned_cols=66 Identities=6% Similarity=0.138 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCC-EEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHhC--CCcEEEEecCC
Q 009017 29 AAAELKFKLEAMDY-IVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy-~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dG-lellr~Lr--~iPIIvLSs~~ 98 (546)
+...+.+.+++.|| .+..+.. .. +.++.+.. ..+|.||+-.. . .+. .+.++.++ .+|+|++....
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~--~-~~~~~~~~~~~~~~~iPvV~~~~~~ 94 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA--KGVKALAINLV--D-PAAAGTVIEKARGQNVPVVFFNKEP 94 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--S-GGGHHHHHHHHHTTTCCEEEESSCC
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCC--C-cchhHHHHHHHHHCCCcEEEecCCC
Confidence 44556677778898 8775542 22 34555555 57898887432 1 122 34566664 79999886543
Q ss_pred C
Q 009017 99 C 99 (546)
Q Consensus 99 d 99 (546)
.
T Consensus 95 ~ 95 (309)
T 2fvy_A 95 S 95 (309)
T ss_dssp C
T ss_pred C
Confidence 3
No 440
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=25.42 E-value=1.3e+02 Score=27.67 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=38.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEe
Q 009017 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVE 70 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlD 70 (546)
+|..||-++...+..++.....+..+. ...+..+.+.-+.. ..||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCC--CceEEEEEC
Confidence 789999999999988888877777765 56666665433444 579999995
No 441
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=25.35 E-value=1.4e+02 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=25.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD 59 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~ 59 (546)
|+|+|+.--. +...|.+.|...|++|+..+.-.+.++.+..
T Consensus 4 M~iiI~G~G~-vG~~la~~L~~~~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 4 MKIIILGAGQ-VGGTLAENLVGENNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp EEEEEECCSH-HHHHHHHHTCSTTEEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 5677776653 4455666666667777766665666665554
No 442
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=25.31 E-value=3.8e+02 Score=27.66 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy-~V~~as---s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
+++||+.++-. ....+.|++.|| +|.... +.++.++.+.. +|++++-.... . .-++++....+.+|
T Consensus 4 ~~kil~~~~~~---~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~----~d~l~~~~~~~--~-~~~~l~~~~~Lk~I 73 (404)
T 1sc6_A 4 KIKFLLVEGVH---QKALESLRAAGYTNIEFHKGALDDEQLKESIRD----AHFIGLRSRTH--L-TEDVINAAEKLVAI 73 (404)
T ss_dssp SCCEEECSCCC---HHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTS----CSEEEECSSCC--B-CHHHHHHCSSCCEE
T ss_pred ceEEEEeCCCC---HHHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcC----CeEEEEcCCCC--C-CHHHHhhCCCCcEE
Confidence 35788876532 223456677788 676543 55666666554 78887743221 1 24677777788888
Q ss_pred EEecCC-ChHHHHHHHHcCCCEEEeCCCCHH
Q 009017 93 ITSNIH-CLSTMMKCIALGAVEFLRKPLSED 122 (546)
Q Consensus 93 vLSs~~-d~e~i~~Al~aGAdDYL~KP~~~e 122 (546)
...+-. |.-.+..|.+.|+.=+=..-....
T Consensus 74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~ 104 (404)
T 1sc6_A 74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTR 104 (404)
T ss_dssp EECSSCCTTBCHHHHHHTTCCEECCTTTTHH
T ss_pred EECCcccCccCHHHHHhCCCEEEecCcccHH
Confidence 775533 222355677888754433333433
No 443
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=25.24 E-value=35 Score=32.25 Aligned_cols=103 Identities=16% Similarity=0.066 Sum_probs=65.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE--------CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTF--------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a--------ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr~Lr 87 (546)
+.+||++-.+. .+..|.+.|++.|+.|..+ ....+..+.+.. ..+|+|++=- ..+.+ +++.+.
T Consensus 110 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~--~~~d~v~ftS-----~s~v~~~~~~~~ 181 (229)
T 3p9z_A 110 KKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKP--KEKSILIFTA-----ISHAKAFLHYFE 181 (229)
T ss_dssp TCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSC--CTTCEEEECS-----HHHHHHHHHHSC
T ss_pred CCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhc--CCCeEEEEEC-----HHHHHHHHHHhC
Confidence 45888886654 3567888899888765421 222345566666 6789888721 23444 344443
Q ss_pred ---CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009017 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (546)
Q Consensus 88 ---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~v 131 (546)
.+.++.+. ......+.+.|..-++.+-.+.+.|++.+..+
T Consensus 182 ~~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 182 FLENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CCTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred cccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 45555443 44555566778876777778899999887654
No 444
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=25.17 E-value=2.6e+02 Score=26.97 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=64.5
Q ss_pred CC-EEEEEeCCHHHHHHHHHHHhhCCCEEEEEC------CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHH-
Q 009017 17 GL-RVLLLDQDSSAAAELKFKLEAMDYIVSTFY------NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLE- 84 (546)
Q Consensus 17 ~~-rILIVDDD~~~~~~L~~~Le~~Gy~V~~as------s~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGle-llr- 84 (546)
+. +||+.-.+. .+..|.+.|+..|+.|..+. .. .++++.+.. ..+|+|++=- ..+.+ |++
T Consensus 155 g~~~vLi~r~~~-~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~--~~~d~v~FtS-----~~~v~~~~~~ 226 (286)
T 3d8t_A 155 GRGVAALQLYGK-PLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLR--GEVDALAFVA-----AIQVEFLFEG 226 (286)
T ss_dssp CCSEEEEECSSS-CCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHT--TCCSEEEESS-----HHHHHHHHHH
T ss_pred CCceEEEEccCc-ccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHc--CCCCEEEEEC-----HHHHHHHHHH
Confidence 45 899886553 35678899999997765322 22 334455665 5789888732 22332 222
Q ss_pred ---------HhC-CCcEEEEecCCChHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHHHH
Q 009017 85 ---------TAK-DLPTIITSNIHCLSTMMKCIALGA-VEFLRKPLSEDKLRNLWQHVV 132 (546)
Q Consensus 85 ---------~Lr-~iPIIvLSs~~d~e~i~~Al~aGA-dDYL~KP~~~eeL~~~I~~vl 132 (546)
.++ .++++.+.. .....+.+.|. .+++.+..+.+.|++.|...+
T Consensus 227 ~~~~~~~~~~l~~~~~i~aIG~----~TA~al~~~G~~~~~~a~~~~~~~L~~~l~~~~ 281 (286)
T 3d8t_A 227 AKDPKALREALNTRVKALAVGR----VTADALREWGVKPFYVDETERLGSLLQGFKRAL 281 (286)
T ss_dssp CSCHHHHHHHHTTTSEEEEESH----HHHHHHHHTTCCCSEEECSSCHHHHHHHHHHHH
T ss_pred HHhccchhhHhhcCCEEEEECH----HHHHHHHHcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 234 566766653 44555667887 456677779999988876654
No 445
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=25.13 E-value=1.3e+02 Score=30.32 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC
Q 009017 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFY 48 (546)
Q Consensus 14 m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~-~as 48 (546)
||+.+||+++.........|+.+++ .|++|+ +++
T Consensus 4 m~~~mrivf~Gt~~fa~~~L~~L~~-~~~~v~~Vvt 38 (318)
T 3q0i_A 4 MSQSLRIVFAGTPDFAARHLAALLS-SEHEIIAVYT 38 (318)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHT-SSSEEEEEEC
T ss_pred cccCCEEEEEecCHHHHHHHHHHHH-CCCcEEEEEc
Confidence 4556899999998777777777775 478865 444
No 446
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=24.99 E-value=1.1e+02 Score=32.76 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=43.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 49 s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
+..+.++.+.+ ..+|+|.+|...+....-+++++.++ ++|||+ ..-.+.+.+..+.++||+.+..
T Consensus 229 ~~~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 33445555555 46899999987665112346777775 456665 3345678889999999998876
No 447
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.91 E-value=1.3e+02 Score=28.85 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCC
Q 009017 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~ 98 (546)
+...+...+++.||.+..+.+ .+ +.++.+.. ..+|.||+....+. ...+.++.+. .+|||++....
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 21 DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT--KGVKVLVIASIDGT--TLSDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HTCSEEEECCSSGG--GGHHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH--cCCCEEEEEcCCch--hHHHHHHHHHHCCCCEEEECCCC
Confidence 345566777788999775542 22 34555555 46898888543222 2234566664 79999886543
No 448
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=24.90 E-value=1.7e+02 Score=30.49 Aligned_cols=107 Identities=12% Similarity=0.005 Sum_probs=65.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE---EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC-CCc
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~---V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr-~iP 90 (546)
..+++|+..+......+...+++.|.. |.... +.++..+++.. .|++|+=... + -|+.+++.+. .+|
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-~--~g~~~lEAma~G~P 478 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRH----ADLFLDTHPY-N--AHTTASDALWTGCP 478 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGG----CSEEECCSSS-C--CSHHHHHHHHTTCC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhc----CCEEeeCCCC-C--CcHHHHHHHhCCCC
Confidence 357788873444567788888777653 55443 44567777766 5776654333 3 4678888876 899
Q ss_pred EEEEecCC---ChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 91 TIITSNIH---CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 91 IIvLSs~~---d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
||.+.+.. +.. .......|..+++.. +.++|.+++..++.
T Consensus 479 vv~~~g~~~~s~~~-~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 479 VLTTPGETFAARVA-GSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp EEBCCCSSGGGSHH-HHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred EEeccCCCchHHHH-HHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 98743321 111 111233476666654 88889888877764
No 449
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.89 E-value=3.2e+02 Score=26.21 Aligned_cols=65 Identities=6% Similarity=-0.073 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
.+...+...+++.||.+..+.+ .+ +.++.+.. ..+|-||+--. . .+.-.+.+.+. .+|+|++...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~~~~~~~~~~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPR--F-LSVDEIDDIIDAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH--TTCSEEEECCS--S-SCHHHHHHHHHHCSSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--C-CChHHHHHHHHcCCCCEEEEcCC
Confidence 4456667777888999876542 22 25566666 57898887432 2 23334555444 6899888653
No 450
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=24.83 E-value=3.7e+02 Score=28.45 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=57.1
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CC---HHHHHHHhC-CCcEEEEecCCChHH
Q 009017 30 AAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG---SFKFLETAK-DLPTIITSNIHCLST 102 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~--~d---Glellr~Lr-~iPIIvLSs~~d~e~ 102 (546)
...+.....+.|..+. .+++.+|+...+.. .+|+|=+...--.. .| -.+++..+. ++++|.-++-.+.+.
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~ed 222 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQ 222 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHH
Confidence 3444455556798865 89999998887776 46877775432110 11 123444444 677887888889999
Q ss_pred HHHHHHcCCCEEEeC
Q 009017 103 MMKCIALGAVEFLRK 117 (546)
Q Consensus 103 i~~Al~aGAdDYL~K 117 (546)
+.++.++ |+.||+=
T Consensus 223 v~~~~~~-a~avLVG 236 (452)
T 1pii_A 223 VRELSHF-ANGFLIG 236 (452)
T ss_dssp HHHHTTT-CSEEEEC
T ss_pred HHHHHHh-CCEEEEc
Confidence 9999999 9999764
No 451
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=24.63 E-value=4.5e+02 Score=26.34 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=55.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEE
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as--s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPII 92 (546)
+++.+|||.++... ...+.|++.++++.... +.++..+.+.. .|++|+-...+ .+ -++++.+..+.+|
T Consensus 24 ~~~~~vli~~~~~~---~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~----~d~li~~~~~~--~~-~~~l~~~~~Lk~I 93 (335)
T 2g76_A 24 ANLRKVLISDSLDP---CCRKILQDGGLQVVEKQNLSKEELIAELQD----CEGLIVRSATK--VT-ADVINAAEKLQVV 93 (335)
T ss_dssp --CCEEEECSCCCH---HHHHHHHHHTCEEEECCSCCHHHHHHHGGG----CSEEEECSSSC--BC-HHHHHHCSSCCEE
T ss_pred ccceEEEEcCCCCH---HHHHHHHhCCCEEEECCCCCHHHHHHHhcC----ceEEEEcCCCC--CC-HHHHhhCCCCcEE
Confidence 34567888766432 23455565577776543 45566666654 68888743221 12 3677777888888
Q ss_pred EEecCCCh-HHHHHHHHcCCCEEEeCCCCHHH
Q 009017 93 ITSNIHCL-STMMKCIALGAVEFLRKPLSEDK 123 (546)
Q Consensus 93 vLSs~~d~-e~i~~Al~aGAdDYL~KP~~~ee 123 (546)
...+-.-. -....|.+.|+.=.-........
T Consensus 94 ~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~ 125 (335)
T 2g76_A 94 GRAGTGVDNVDLEAATRKGILVMNTPNGNSLS 125 (335)
T ss_dssp EESSSSCTTBCHHHHHHHTCEEECCSSTTHHH
T ss_pred EECCCCcchhChHHHHhCCeEEEECCCccchH
Confidence 87654322 23445667776433333344433
No 452
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.57 E-value=1.8e+02 Score=26.24 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=26.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
|+|||..-...+...+...|.+.|++|..+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 31 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA 31 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3799999999999999999988899988554
No 453
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=24.50 E-value=1.7e+02 Score=26.56 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhCCCEEEE-EC---CHHHHHHHhhcCCCCeeEE-EEecCC---CCCCCHH-HHHHHhC--CCcEEEEecC
Q 009017 29 AAAELKFKLEAMDYIVST-FY---NENEALSAFSDKPENFHVA-IVEVTT---SNTDGSF-KFLETAK--DLPTIITSNI 97 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~-as---s~~eALe~L~~~~~~pDLV-IlDl~m---p~~~dGl-ellr~Lr--~iPIIvLSs~ 97 (546)
....+.+.+.+.|..+.. +. +..+.++.+.. ...|+| +.=... .+ .+.. +.+++++ ++|+++.-+-
T Consensus 91 ~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g-~~~~~~~i~~~~~~~~pi~v~GGI 167 (207)
T 3ajx_A 91 TIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLDEQAKP-GFDLNGLLAAGEKARVPFSVAGGV 167 (207)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHHHHTST-TCCTHHHHHHHHHHTSCEEEESSC
T ss_pred HHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEecccccccC-CCchHHHHHHhhCCCCCEEEECCc
Confidence 344455556555666532 32 55554444444 347877 431111 12 1111 6666665 6887766554
Q ss_pred CChHHHHHHHHcCCCEEEe
Q 009017 98 HCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 98 ~d~e~i~~Al~aGAdDYL~ 116 (546)
..+.+.+++++||+.++.
T Consensus 168 -~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 168 -KVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp -CGGGHHHHHHTTCSEEEE
T ss_pred -CHHHHHHHHHcCCCEEEE
Confidence 467888899999998864
No 454
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=24.44 E-value=1.1e+02 Score=31.71 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred CEEEEEeC--CH---HHHHHHHHHHhhCCCEEEEECCHHHHHHHh-------------------hcCCCCeeEEEEecCC
Q 009017 18 LRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALSAF-------------------SDKPENFHVAIVEVTT 73 (546)
Q Consensus 18 ~rILIVDD--D~---~~~~~L~~~Le~~Gy~V~~ass~~eALe~L-------------------~~~~~~pDLVIlDl~m 73 (546)
.+|+||-- ++ .....|.+.|.+.|+.|..-....+.+... ......+|+||+ +
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---l 115 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---L 115 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---E
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---E
Confidence 47888852 23 334667777778899987655444432211 011135788777 2
Q ss_pred CCCCCH--HHHHHHhC--CCcEEEEecCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 009017 74 SNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (546)
Q Consensus 74 p~~~dG--lellr~Lr--~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlrr 134 (546)
+ .|| +..++.+. .+|||-+.. |-.+||. +++.+++...|.++++.
T Consensus 116 -G-GDGT~L~aa~~~~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 116 -G-GDGTLLYASSLFQGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp -S-STTHHHHHHHHCSSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred -c-ChHHHHHHHHHhccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcC
Confidence 3 577 45555554 689887653 5566777 67778888888877764
No 455
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.41 E-value=1.4e+02 Score=28.20 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC--CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAMDYIVSTFY--NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~~as--s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++.||.+..+. +.+ +.++.+.. ..+|.||+.-.... .....++.++ .+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA--SGAKGFVICTPDPK--LGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH--TTCCEEEEECSCGG--GHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCch--hhHHHHHHHHHCCCcEEEeCC
Confidence 33455666677799977554 333 24555555 46898887643221 1234455554 799998874
No 456
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=24.29 E-value=3.5e+02 Score=27.12 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=49.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhhcCC------------CCeeEEEEecCCCCCCCHHHHH
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDKP------------ENFHVAIVEVTTSNTDGSFKFL 83 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~-V~-~ass~~eALe~L~~~~------------~~pDLVIlDl~mp~~~dGlell 83 (546)
.+|+-||-++...+..+..++..|.. +. ...+..+.+..+.... ..||+||+|---.+ . .-+++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-~-~~~~~ 313 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-L-DSETE 313 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-C-CHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc-c-HHHHH
Confidence 47999999999999988888877763 43 4556677665543210 16999999842222 1 23567
Q ss_pred HHhCCCcEEEEec
Q 009017 84 ETAKDLPTIITSN 96 (546)
Q Consensus 84 r~Lr~iPIIvLSs 96 (546)
+.|+....|++.+
T Consensus 314 ~~l~~~g~ivyvs 326 (369)
T 3bt7_A 314 KMVQAYPRILYIS 326 (369)
T ss_dssp HHHTTSSEEEEEE
T ss_pred HHHhCCCEEEEEE
Confidence 7776444444443
No 457
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=24.23 E-value=1.9e+02 Score=24.92 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=42.1
Q ss_pred CeeEEEEecCCCCCCCHHHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHH
Q 009017 63 NFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKP--LSEDKLRNLWQHVVH 133 (546)
Q Consensus 63 ~pDLVIlDl~mp~~~dGlellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP--~~~eeL~~~I~~vlr 133 (546)
..|++|+- ..+..+++.+. .+|+|++-...+.....+.+...-.+++..+ ++.++|.++|..++.
T Consensus 86 ~ad~~I~~------~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 86 KTRAFITH------GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp TEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CcCEEEEc------CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHc
Confidence 35667651 23455666665 8999988765555444555555445666665 478899988887764
No 458
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=24.18 E-value=1.7e+02 Score=28.36 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCC--CEEEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTF 47 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~G--y~V~~a 47 (546)
.+++|||..-...+...|...|.+.| +.|+..
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEE
Confidence 45789999999999999888888777 666543
No 459
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=24.16 E-value=54 Score=27.86 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 009017 495 EVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTI 536 (546)
Q Consensus 495 e~~d~~~~~~~~~p~~p~p~glk~p~~~~v~~el~~~g~~~~ 536 (546)
+.+.+.+++.. .+-..-=+.+-.|+++.++.+|.++|+.+|
T Consensus 25 ~~l~~~l~~~~-~~V~~a~le~~~P~l~~~l~~l~~~G~~~v 65 (126)
T 3lyh_A 25 EKLAEPTVESI-ENAAIAYMELAEPSLDTIVNRAKGQGVEQF 65 (126)
T ss_dssp HHHHHHHHHHS-TTCEEEESSSSSSBHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 34445566555 333333367789999999999999998764
No 460
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=24.14 E-value=2.2e+02 Score=26.31 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=41.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEecC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe~L~~~~--~~pDLVIlDl~ 72 (546)
..+|..||-++...+..+..++..|+ .|. ...+..+.+..+.... ..||+|++|..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 35899999999999998888877665 243 5677777766654211 36999999975
No 461
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=24.09 E-value=1.1e+02 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEecCCCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVTTSN 75 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~--~~~pDLVIlDl~mp~ 75 (546)
..+|.-||-++...+..++.++..|.. |. ...+..+.+..+... ...||+|++|.....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~ 146 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR 146 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc
Confidence 468999999999999999988877653 43 666777766555410 036999999975433
No 462
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.02 E-value=3.3e+02 Score=26.03 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=28.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
+++++|||..-...+...+...|.+.|++|+.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~ 36 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIAD 36 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 3457899999999999999999988999988654
No 463
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=23.75 E-value=1.1e+02 Score=30.75 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHhC---CCcEEEE--ecCCChHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 009017 80 FKFLETAK---DLPTIIT--SNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (546)
Q Consensus 80 lellr~Lr---~iPIIvL--Ss~~d~e~i~~Al~aGAdDYL~K-----P~~~eeL~~~I~~vlr 133 (546)
++++++++ ++|||++ .+-.+.+.+.++++.|++++++= --++.....++..++.
T Consensus 187 ~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~ 250 (291)
T 3o07_A 187 VSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATT 250 (291)
T ss_dssp HHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 66777665 6899887 33447899999999999999764 3446666655554443
No 464
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=23.68 E-value=2.2e+02 Score=25.66 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC-CCeeEEEEecCC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP-ENFHVAIVEVTT 73 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~-~ass~~eALe~L~~~~-~~pDLVIlDl~m 73 (546)
..+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+|++|...
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~ 143 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADK 143 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCc
Confidence 45899999999999999999987775 243 6677777766654311 359999999753
No 465
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=23.67 E-value=3.2e+02 Score=26.48 Aligned_cols=85 Identities=11% Similarity=-0.040 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-CCC-CCHHHHHHH----hC-CCcEEEEecCCCh
Q 009017 29 AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-SNT-DGSFKFLET----AK-DLPTIITSNIHCL 100 (546)
Q Consensus 29 ~~~~L~~~Le~~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~m-p~~-~dGlellr~----Lr-~iPIIvLSs~~d~ 100 (546)
....+.....+.|..+. .+.+.+|+...+.- ..+|+|-+...- -.. .| ++.... +. +.++|.-++-.+.
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l--~g~~iIGinnr~l~t~~~d-~~~~~~l~~~ip~~~~vIaEsGI~t~ 214 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSV--IRPKIIGINTRDLDTFEIK-KNVLWELLPLVPDDTVVVAESGIKDP 214 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT--CCCSEEEEECBCTTTCCBC-TTHHHHHGGGSCTTSEEEEESCCCCG
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCCEEEEeCcccccCCCC-HHHHHHHHHhCCCCCEEEEeCCCCCH
Confidence 33444455556798855 88899997766653 157888665422 110 11 233333 32 4566666777788
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009017 101 STMMKCIALGAVEFLRK 117 (546)
Q Consensus 101 e~i~~Al~aGAdDYL~K 117 (546)
+.+.++.++ |+.||+-
T Consensus 215 edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 215 RELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHh-CCEEEEc
Confidence 999999999 9999874
No 466
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=23.60 E-value=98 Score=34.42 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=46.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec--CCCCCCCH-------HHHHHHhC
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV--TTSNTDGS-------FKFLETAK 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl--~mp~~~dG-------lellr~Lr 87 (546)
+++|+|||....+...|...|++.|+.+.+...... ... ..+|.||+-= ..+. ..+ .++++.+.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~--~~~DgIIlsGGPg~p~-d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL--ARYDVVVMGPGPGDPS-DAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG--GGCSEEEECCCSSCTT-CTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc--cCCCEEEECCCCCChh-hhhhhhHHHHHHHHHHHH
Confidence 568999999988899999999999998775533221 122 3578888831 1222 222 23444432
Q ss_pred --CCcEEEEe
Q 009017 88 --DLPTIITS 95 (546)
Q Consensus 88 --~iPIIvLS 95 (546)
++||+-|.
T Consensus 519 ~~~iPiLGIC 528 (645)
T 3r75_A 519 DEGKPFMAVC 528 (645)
T ss_dssp HHTCCEEEET
T ss_pred HCCCCEEEEC
Confidence 78988764
No 467
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.55 E-value=1.5e+02 Score=27.53 Aligned_cols=63 Identities=6% Similarity=0.071 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCEEEEEC-----CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 31 AELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 31 ~~L~~~Le~~Gy~V~~as-----s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
..+...+++.||.+..+. +.+ +.++.+.. ..+|.||+-..... .-.+.++.+. .+|+|++...
T Consensus 27 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 27 EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK--RKPDVILLAAADYE--KTYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--TCCSEEEECCSCTT--TTHHHHTTTGGGTCEEEEESSC
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH--hCCCEEEEeCCChH--HhHHHHHHHHHCCCcEEEECCC
Confidence 445666677799987653 222 34555655 56898887543222 1125566664 7999888553
No 468
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=23.54 E-value=1.7e+02 Score=25.34 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=34.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy~--V~-~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
.+|..||-++...+..+..+...|.. +. ...+..+.+.... ..+|+|++|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~fD~i~~~~ 108 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLDP 108 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc---CCCCEEEECC
Confidence 47888888888888888888776643 43 4556655444433 3588888874
No 469
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=23.52 E-value=1.9e+02 Score=24.46 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHH
Q 009017 117 KPLSEDKLRNLWQHVV 132 (546)
Q Consensus 117 KP~~~eeL~~~I~~vl 132 (546)
.|++.+++.+.++.++
T Consensus 101 ~~~~~~ei~~~i~~~~ 116 (118)
T 3ju3_A 101 RHMTEDEILKSAKEIL 116 (118)
T ss_dssp BCCCHHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHh
Confidence 4899999999988765
No 470
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=23.47 E-value=79 Score=30.70 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCCEEEEEeCCHHH--------------HHHHHHHHhhCCCEEEEEC--CHHHHH--HHhhcCCCCeeEEEE
Q 009017 15 PKGLRVLLLDQDSSA--------------AAELKFKLEAMDYIVSTFY--NENEAL--SAFSDKPENFHVAIV 69 (546)
Q Consensus 15 ~~~~rILIVDDD~~~--------------~~~L~~~Le~~Gy~V~~as--s~~eAL--e~L~~~~~~pDLVIl 69 (546)
...+||||..+..-- ...|.++|+..||+|.+.+ +....+ +.|. .+|+||.
T Consensus 5 ~~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~----~~DvvV~ 73 (252)
T 1t0b_A 5 TTPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD----RCDVLVW 73 (252)
T ss_dssp -CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH----TCSEEEE
T ss_pred CCCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh----cCCEEEE
Confidence 335799999865421 1245888888999988755 543332 2344 3898886
No 471
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.42 E-value=1.1e+02 Score=30.30 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=32.6
Q ss_pred HHHHHHhC-CCcEEEEecCCChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009017 80 FKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVH 133 (546)
Q Consensus 80 lellr~Lr-~iPIIvLSs~~d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~vlr 133 (546)
..+++.+. .+|+|++-...+.....+.+..+-.+++..+- +.++|..+|.+++.
T Consensus 311 ~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~ 367 (398)
T 4fzr_A 311 GTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRD 367 (398)
T ss_dssp HHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHh
Confidence 45666665 79999875545555555555555567776654 67788888877764
No 472
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.38 E-value=3.6e+02 Score=25.92 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass---~---~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
.+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--.... . ++++.+. .+|+|++..
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ--HRPDGVLITGLSHA-E---PFERILSQHALPVVYMMD 149 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSCCC-T---THHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc--CCCCEEEEeCCCCC-H---HHHHHHhcCCCCEEEEee
Confidence 4566778888889999876543 2 245556666 57887766432222 2 3444443 799998854
No 473
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=23.36 E-value=67 Score=32.10 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=55.4
Q ss_pred EEEEeCCHHHHHHHHHHHh----hCCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCC---C
Q 009017 20 VLLLDQDSSAAAELKFKLE----AMDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD---L 89 (546)
Q Consensus 20 ILIVDDD~~~~~~L~~~Le----~~Gy--~-V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~---i 89 (546)
|||-|++-.+.-.+...++ ..++ . .+.+.+.+++.+.+.. ..|+|.+|-.-++ +-.++++.++. -
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a---GaD~I~LDn~~~e--~l~~av~~l~~~~~~ 240 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA---GADIVMLDNLSPE--EVKDISRRIKDINPN 240 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHHHHCTT
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCC
Confidence 6776666554322333332 2333 2 3478899999998886 4799999973322 12234444432 2
Q ss_pred cEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 90 PIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
..|..++--+.+.+.+..+.|++.+.+
T Consensus 241 v~ieASGGIt~eni~~~a~tGVD~Isv 267 (285)
T 1o4u_A 241 VIVEVSGGITEENVSLYDFETVDVISS 267 (285)
T ss_dssp SEEEEEECCCTTTGGGGCCTTCCEEEE
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 345566666777788888888876653
No 474
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=23.35 E-value=3.8e+02 Score=27.03 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCCCEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-E-C-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh--
Q 009017 15 PKGLRVLLLDQDS---SAAAELKFKLEAMDYIVST-F-Y-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-- 86 (546)
Q Consensus 15 ~~~~rILIVDDD~---~~~~~L~~~Le~~Gy~V~~-a-s-s~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L-- 86 (546)
|+++||.||.--. .-...+..+....+++++. + + +.+.+.+.... .... +... - .+--++++.-
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~--~g~~----~~~~-~-~~~~~ll~~~~~ 81 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ--LGVD----SERC-Y-ADYLSMFEQEAR 81 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH--TTCC----GGGB-C-SSHHHHHHHHTT
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH--hCCC----ccee-e-CCHHHHHhcccc
Confidence 5578999999775 3333333333334577664 3 3 33444443333 1110 0000 1 2334566542
Q ss_pred --CCCcEEEEecCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 009017 87 --KDLPTIITSNIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (546)
Q Consensus 87 --r~iPIIvLSs~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~ 129 (546)
.++-+|+++... -.+.+..|+++|..=|+-||+. .++..+.++
T Consensus 82 ~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 130 (398)
T 3dty_A 82 RADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRE 130 (398)
T ss_dssp CTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHH
T ss_pred cCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHH
Confidence 135555554433 4678889999999999999974 566665444
No 475
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=23.35 E-value=54 Score=32.24 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHhC-CCcEEEEe------cCCChHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009017 80 FKFLETAK-DLPTIITS------NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (546)
Q Consensus 80 lellr~Lr-~iPIIvLS------s~~d~e~i~~Al~aGAdDYL~KP~~~eeL~~~I~~vlr 133 (546)
+++++++| .+|+|+|+ .+.-.....+|.++|++++|.--+..+|.......+-+
T Consensus 79 ~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~ 139 (252)
T 3tha_A 79 FELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECER 139 (252)
T ss_dssp HHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
No 476
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=23.26 E-value=1.1e+02 Score=29.27 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHHHHHhC---CCcEEEEecCCChH---HHHHHHHcCCCEEEeCCCCHHHHHH
Q 009017 79 SFKFLETAK---DLPTIITSNIHCLS---TMMKCIALGAVEFLRKPLSEDKLRN 126 (546)
Q Consensus 79 Glellr~Lr---~iPIIvLSs~~d~e---~i~~Al~aGAdDYL~KP~~~eeL~~ 126 (546)
++++++.++ ++|+++++- .+.. .+..+.++||+.++.-....+++..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~ 134 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHS 134 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHHH
T ss_pred HHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHHH
Confidence 456777776 689988752 2211 1234889999999986555444433
No 477
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=23.24 E-value=2.9e+02 Score=26.25 Aligned_cols=82 Identities=10% Similarity=0.121 Sum_probs=45.7
Q ss_pred cCCCCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCHHH---HHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHh
Q 009017 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-YNENE---ALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETA 86 (546)
Q Consensus 12 ~~m~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a-ss~~e---ALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~L 86 (546)
..|+++.+|||..-..-+...+...|.+.|++|+.+ .+.+. +.+.+.........+.+|+ .+ .+.+ ++++.+
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv--~d-~~~v~~~~~~~ 95 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDV--TS-TDEVHAAVAAA 95 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCT--TC-HHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCC--CC-HHHHHHHHHHH
Confidence 456666789999999999999999999999998754 44332 3333443112344444554 34 3333 344444
Q ss_pred C----CCcEEEEec
Q 009017 87 K----DLPTIITSN 96 (546)
Q Consensus 87 r----~iPIIvLSs 96 (546)
. .+-+++-.+
T Consensus 96 ~~~~g~id~lv~nA 109 (279)
T 3sju_A 96 VERFGPIGILVNSA 109 (279)
T ss_dssp HHHHCSCCEEEECC
T ss_pred HHHcCCCcEEEECC
Confidence 2 566666543
No 478
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=23.23 E-value=2.7e+02 Score=26.55 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=39.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhh--cCCCCeeEEEEecC
Q 009017 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFS--DKPENFHVAIVEVT 72 (546)
Q Consensus 18 ~rILIVDDD~~~~~~L~~~Le~~Gy-~V~-~ass~~eALe~L~--~~~~~pDLVIlDl~ 72 (546)
.+|.-+|-++...+.++..++..|+ .+. ...+..+....+. . ..||+||+|.-
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~--~~fD~Vl~d~P 165 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE--IFFDKILLDAP 165 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT--CCEEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcc--ccCCEEEEcCC
Confidence 6899999999999999999988876 343 5567666544331 3 57999999964
No 479
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=23.22 E-value=1.9e+02 Score=25.34 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=37.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl 71 (546)
+.+|.++...... ..|...+..+..+.+..++++.+.. ...|+++.+.
T Consensus 116 g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 163 (233)
T 1ii5_A 116 NKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLLQK--KQVEAVMFDR 163 (233)
T ss_dssp TCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHHHc--CCccEEEeCH
Confidence 5688888766542 2344447899999999999999999 7899999985
No 480
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=23.20 E-value=1e+02 Score=29.96 Aligned_cols=77 Identities=8% Similarity=0.099 Sum_probs=46.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHH---HHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHhC----
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENE---ALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK---- 87 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as-s~~e---ALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~Lr---- 87 (546)
+.+|||..-..-+...+...|.+.|++|+.+. +.+. +.+.+........++.+|+. + .+.+ ++++.+.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~--d-~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVR--H-LDEMVRLADEAFRLLG 107 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT--C-HHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCC--C-HHHHHHHHHHHHHhCC
Confidence 45799999999999999999999999987544 4333 22333331123445555553 4 3333 3444442
Q ss_pred CCcEEEEec
Q 009017 88 DLPTIITSN 96 (546)
Q Consensus 88 ~iPIIvLSs 96 (546)
.+-+|+-.+
T Consensus 108 ~id~lvnnA 116 (301)
T 3tjr_A 108 GVDVVFSNA 116 (301)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEECC
Confidence 566666554
No 481
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=23.19 E-value=1.9e+02 Score=29.69 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecCCChHHHHH
Q 009017 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (546)
Q Consensus 28 ~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~~d~e~i~~ 105 (546)
.....|.+.-++.|..+++-.--.++++++.+ ..+|++=+ .-.+ +.-+.|++.+. ..|||+=|+-...+.+..
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~--~~v~~~KI--~S~~-~~N~pLL~~va~~gKPviLstGmstl~Ei~~ 152 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEA--HGIEIIKI--ASCS-FTDWPLLERIARSDKPVVASTAGARREDIDK 152 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--TTCCEEEE--CSSS-TTCHHHHHHHHTSCSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHH--cCCCEEEE--Cccc-ccCHHHHHHHHhhCCcEEEECCCCCHHHHHH
Confidence 34456777777889887744444566788876 44565544 3345 67799999986 799999998777666655
Q ss_pred HH
Q 009017 106 CI 107 (546)
Q Consensus 106 Al 107 (546)
|+
T Consensus 153 Av 154 (350)
T 3g8r_A 153 VV 154 (350)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 482
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=23.09 E-value=2.1e+02 Score=22.61 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=44.5
Q ss_pred ccCCCCcCccchhhhhhHHHHHHHhc--CCCCChHHHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 009017 300 SKASGLQNSCGNKANRKKMKAVEQLG--VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 361 (546)
Q Consensus 300 ~~~~~~~~~~~~~lh~~f~~av~~lg--~~~a~p~~i~~~m~v~~l~~~~v~shlqkyr~~~~~ 361 (546)
.+.|+.|+.+|.+--.......+++| ...-+.....+|..-=||+...|+.=.|.-|...+.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 46677888898864444444556666 555666777788877899999999999887765543
No 483
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.05 E-value=2.1e+02 Score=26.83 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEecC
Q 009017 30 AAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (546)
Q Consensus 30 ~~~L~~~Le~~Gy~V~~ass------~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs~ 97 (546)
...+.+.+++.||.+..+.. ..+.++.+.. ..+|-||+--.... + +.++.++ .+|+|++...
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~i~~~ 98 (288)
T 3gv0_A 29 VFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILET--GSADGVIISKIEPN--D--PRVRFMTERNMPFVTHGRS 98 (288)
T ss_dssp HHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHH--TCCSEEEEESCCTT--C--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHc--CCccEEEEecCCCC--c--HHHHHHhhCCCCEEEECCc
Confidence 34456667778999876542 2345555655 56887766422212 1 4455554 7999988654
No 484
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=23.04 E-value=53 Score=32.20 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCEEEEEeC----CH----HHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 009017 17 GLRVLLLDQ----DS----SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (546)
Q Consensus 17 ~~rILIVDD----D~----~~~~~L~~~Le~~Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~ 72 (546)
+++|+|+-. +. .....+.+.|++.||+|+.+......+..+.. ..+|+|+.-++
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~--~~~D~v~~~~h 74 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD--EGFVRAFNALH 74 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH--TTCCEEEECCC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh--cCCCEEEEcCC
Confidence 578988864 22 24577888889999999988754433444555 57899988654
No 485
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.98 E-value=2.4e+02 Score=27.19 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred EEEEEeCCHHHHHHHHHHH-hhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC---
Q 009017 19 RVLLLDQDSSAAAELKFKL-EAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (546)
Q Consensus 19 rILIVDDD~~~~~~L~~~L-e~~Gy~V~~---a----ss~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--- 87 (546)
.+++.+++......+.+.+ +..|.+++. + .+....+..+.. ..+|+|++-..- .+...++++++
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~---~~~~~~~~~~~~~g 220 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKG--KDFDAIVVPGYY---NEAGKIVNQARGMG 220 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHT--SCCSEEECCSCH---HHHHHHHHHHHHTT
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecCc---HHHHHHHHHHHHcC
Confidence 4555666544444454444 456777552 2 355677788887 689999875432 34566777765
Q ss_pred -CCcEEEEecCCChHHHHHHH
Q 009017 88 -DLPTIITSNIHCLSTMMKCI 107 (546)
Q Consensus 88 -~iPIIvLSs~~d~e~i~~Al 107 (546)
..+++........+....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 221 IDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp CCSCEEECGGGCSHHHHHHHC
T ss_pred CCCcEEEecccccchhhhhhh
Confidence 56776666556665555443
No 486
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=22.98 E-value=4.5e+02 Score=24.32 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=56.7
Q ss_pred CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCE
Q 009017 40 MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVE 113 (546)
Q Consensus 40 ~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~-dGlellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdD 113 (546)
.|..+. -+.+..|+.+.... ..|.|-+ .|... .|++.++.++ ++|++.+-+- +.+.+.+.+++|++.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~ 175 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGI-KEEHLPHYAALPNLL 175 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSC-CGGGHHHHHTCSSBS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHhCCCcE
Confidence 444433 57889998887765 4788777 34313 3888888775 6888866554 467888999999877
Q ss_pred EEeCC----CCHHHHHHHHHHHH
Q 009017 114 FLRKP----LSEDKLRNLWQHVV 132 (546)
Q Consensus 114 YL~KP----~~~eeL~~~I~~vl 132 (546)
+..=. -+.+++..+.+.++
T Consensus 176 vavgSai~~~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 176 AVGGSWLLQGNLEAVRAKVRAAK 198 (207)
T ss_dssp CEEESGGGSSCHHHHHHHHHHHH
T ss_pred EEEehhhhCCCHHHHHHHHHHHH
Confidence 64321 45555666555544
No 487
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=22.95 E-value=1e+02 Score=32.21 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC---CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr---~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.++.+.+ ..+|+|++|..... .. -.++++.++ .++||+ ..-.+.+.+..+.++||+.++.
T Consensus 146 ~e~~~~lve--aGvdvIvldta~G~-~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE--AGVDVIVLDSAHGH-SLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH--HTCSEEEECCSCCS-BHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 455555555 46899999976543 22 257777776 466664 2234678889999999999887
No 488
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.94 E-value=3.4e+02 Score=25.77 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=32.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE-CCHHHHHHHhhc--CCCCeeEEEE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF-YNENEALSAFSD--KPENFHVAIV 69 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy--~V~~a-ss~~eALe~L~~--~~~~pDLVIl 69 (546)
|.+|+++-....+....+..+.+.+. .+..+ .+.++++...+. ....+|+||.
T Consensus 12 m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 12 DKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp -CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred CCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEe
Confidence 45677777888888888888876553 44443 456666665432 1024777765
No 489
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=22.91 E-value=70 Score=31.97 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=56.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEEEe
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIvLS 95 (546)
++||.||.--..-.......|... +++++.+.+...+-++.... ..+++-+.+ + --+++.. .++-+|+++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~-~~~~~~~~~----~---~~~ll~~-~~~D~V~i~ 72 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPF-KEKGVNFTA----D---LNELLTD-PEIELITIC 72 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHH-HTTTCEEES----C---THHHHSC-TTCCEEEEC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhh-CCCCCeEEC----C---HHHHhcC-CCCCEEEEe
Confidence 578999988766554455555544 77876333322111111110 001222221 1 1122221 135555554
Q ss_pred cCC--ChHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 009017 96 NIH--CLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQH 130 (546)
Q Consensus 96 s~~--d~e~i~~Al~aGAdDYL~KP~~--~eeL~~~I~~ 130 (546)
... -.+.+.+|+++|..=|+-||+. .++....++.
T Consensus 73 tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~ 111 (349)
T 3i23_A 73 TPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFAL 111 (349)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHH
Confidence 433 3567889999999999999965 6666654443
No 490
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=22.91 E-value=1.7e+02 Score=28.28 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=7.6
Q ss_pred CCCCCEEEEEeC
Q 009017 14 FPKGLRVLLLDQ 25 (546)
Q Consensus 14 m~~~~rILIVDD 25 (546)
|+++||||+|.+
T Consensus 1 M~~~mkIl~v~~ 12 (394)
T 3okp_A 1 MSASRKTLVVTN 12 (394)
T ss_dssp ---CCCEEEEES
T ss_pred CCCCceEEEEeC
Confidence 566789999876
No 491
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=22.87 E-value=1.6e+02 Score=30.27 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHhC----CCcEEEEecCCChHHHHHHHHcCCCEEEe
Q 009017 51 NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (546)
Q Consensus 51 ~eALe~L~~~~~~pDLVIlDl~mp~~~d-Glellr~Lr----~iPIIvLSs~~d~e~i~~Al~aGAdDYL~ 116 (546)
.+.++.+.+ ..+|+|.+|..... .. -++.++.|+ +++||+ -.-.+.+.+..+.++|||...+
T Consensus 102 ~e~~~~a~~--aGvdvI~id~a~G~-~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRD--AGADFFCVDVAHAH-AKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCCS-SHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCC-cHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 345555555 46899999976543 22 245677776 466665 1234678889999999998886
No 492
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=22.80 E-value=2.7e+02 Score=25.92 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhC-CCEEEEEC------CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcEEEEec
Q 009017 29 AAAELKFKLEAM-DYIVSTFY------NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (546)
Q Consensus 29 ~~~~L~~~Le~~-Gy~V~~as------s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPIIvLSs 96 (546)
+...+.+.+++. ||.+..+. +.+ +.++.+.. ..+|.||+.-.... ...++++.+. .+|+|++..
T Consensus 27 ~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 27 VQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE--EQPDGVMFAPTVPQ--YTKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT--TCCSEEEECCSSGG--GTHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEECCCChH--HHHHHHHHHHHCCCeEEEEeC
Confidence 345566667777 88866431 343 34566666 57898887543221 1235566664 799998875
Q ss_pred CC
Q 009017 97 IH 98 (546)
Q Consensus 97 ~~ 98 (546)
..
T Consensus 103 ~~ 104 (304)
T 3gbv_A 103 QI 104 (304)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 493
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=22.77 E-value=53 Score=32.76 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=55.3
Q ss_pred CCEEEEEeCCHHHHHHHHH-HHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 17 GLRVLLLDQDSSAAAELKF-KLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~-~Le~-~Gy~V~-~ass~~eALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
++||.||.--..-...... .|.. .+++++ .++...+..+.... .+.+-+.+ + --+++.. .++-+|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~---~~~~~~~~----~---~~~ll~~-~~~D~V~ 70 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI---YSHIHFTS----D---LDEVLND-PDVKLVV 70 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG---GTTCEEES----C---THHHHTC-TTEEEEE
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh---cCCCceEC----C---HHHHhcC-CCCCEEE
Confidence 4789999887655543444 4443 477776 44322221122222 11222221 1 1122221 1344555
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..=|+-||+ +.++..+.+..
T Consensus 71 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~ 111 (345)
T 3f4l_A 71 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFAL 111 (345)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred EcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHH
Confidence 54433 357788999999999999998 56666655443
No 494
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=22.75 E-value=2e+02 Score=27.09 Aligned_cols=79 Identities=8% Similarity=0.160 Sum_probs=46.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-C-CHHH---HHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHhC-
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-Y-NENE---ALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a-s-s~~e---ALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~Lr- 87 (546)
+++.+|||..-..-+...+...|.+.|++|+.. . +.+. +.+.+.. ...++.++..++.+ .+.+ ++++.+.
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 78 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK--LGVKVLVVKANVGQ-PAKIKEMFQQIDE 78 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 345678888888899999999999999998764 4 3332 2233333 23344444444444 3333 3444442
Q ss_pred ---CCcEEEEec
Q 009017 88 ---DLPTIITSN 96 (546)
Q Consensus 88 ---~iPIIvLSs 96 (546)
.+-+++-.+
T Consensus 79 ~~g~id~lv~nA 90 (258)
T 3oid_A 79 TFGRLDVFVNNA 90 (258)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 566666544
No 495
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=22.71 E-value=2.5e+02 Score=26.03 Aligned_cols=79 Identities=6% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-C-CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHhC-
Q 009017 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-Y-NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK- 87 (546)
Q Consensus 15 ~~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a-s-s~~---eALe~L~~~~~~pDLVIlDl~mp~~~dGl-ellr~Lr- 87 (546)
.++.+|||..-..-+...+...|.+.|++|+.+ . +.+ ++.+.+.. ...++.++..++.+ .+.+ ++++.+.
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA--KGVDSFAIQANVAD-ADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 345678888888899999999999999998754 3 322 23333443 23344444444444 3333 3444442
Q ss_pred ---CCcEEEEec
Q 009017 88 ---DLPTIITSN 96 (546)
Q Consensus 88 ---~iPIIvLSs 96 (546)
.+-+++-.+
T Consensus 79 ~~g~id~lv~nA 90 (246)
T 3osu_A 79 QFGSLDVLVNNA 90 (246)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 566666543
No 496
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=22.68 E-value=1.4e+02 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=23.0
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHhhCCCEEEEECC
Q 009017 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYN 49 (546)
Q Consensus 17 ~~rILIVDD----D~~~~~~L~~~Le~~Gy~V~~ass 49 (546)
.||||++-- +-.-.-.|.+.|.+.|++|+.++.
T Consensus 22 ~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 22 SMRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 479999853 222234578888889999986653
No 497
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=22.64 E-value=90 Score=31.31 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=56.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCe-eEEEEecCCCCCCCHHHHHHHhCCCcEEE
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENF-HVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~-Gy~V~~ass~~eALe~L~~~~~~p-DLVIlDl~mp~~~dGlellr~Lr~iPIIv 93 (546)
+++||.||.--..-.......|... +++++.+.+.... .+.. .+ .+-+.+ +--+++.. .++-+|+
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~---~~~~~~~~~-------~~~~ll~~-~~vD~V~ 70 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKE---RYPQASIVR-------SFKELTED-PEIDLIV 70 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGT---TCTTSEEES-------CSHHHHTC-TTCCEEE
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHH---hCCCCceEC-------CHHHHhcC-CCCCEEE
Confidence 4689999988765444344445444 7887643332211 1222 12 211111 11223321 1355666
Q ss_pred EecCC--ChHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 009017 94 TSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (546)
Q Consensus 94 LSs~~--d~e~i~~Al~aGAdDYL~KP~--~~eeL~~~I~~ 130 (546)
++... -.+.+..|+++|..=|+-||+ +.++..+.++.
T Consensus 71 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (362)
T 3fhl_A 71 VNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIAL 111 (362)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHH
Confidence 55443 357788999999999999997 56776665543
No 498
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=22.58 E-value=2.5e+02 Score=28.84 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 009017 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (546)
Q Consensus 16 ~~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~as 48 (546)
.+.+|+|+..-..- ..+...+++.||+|+.++
T Consensus 34 ~~~~IlIlG~G~lg-~~~~~aa~~lG~~v~v~d 65 (419)
T 4e4t_A 34 PGAWLGMVGGGQLG-RMFCFAAQSMGYRVAVLD 65 (419)
T ss_dssp TTCEEEEECCSHHH-HHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHCCCEEEEEC
Confidence 35689999887654 456667788999987665
No 499
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=22.51 E-value=62 Score=27.93 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh---hcCCCCeeEEEEecCCCCCCCHHHHHHHhC--CCcE
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF---SDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPT 91 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~ass~~eALe~L---~~~~~~pDLVIlDl~mp~~~dGlellr~Lr--~iPI 91 (546)
.++|.||.| .... .-++-.|+++..+.+.+++.+.+ .+ ..+.+|++.-.+.+ .-. +.++.++ ..|+
T Consensus 2 ~mKiaVIGD-~Dtv----~GFrLaGie~~~v~~~ee~~~~~~~l~~--~digIIlIte~ia~-~i~-~~i~~~~~~~~P~ 72 (115)
T 3aon_B 2 TYKIGVVGD-KDSV----SPFRLFGFDVQHGTTKTEIRKTIDEMAK--NEYGVIYITEQCAN-LVP-ETIERYKGQLTPA 72 (115)
T ss_dssp EEEEEEESC-HHHH----GGGGGGTCEEECCCSHHHHHHHHHHHHH--TTEEEEEEEHHHHT-TCH-HHHHHHHTSSSCE
T ss_pred ceEEEEEEC-HHHH----HHHHHcCCeEEEeCCHHHHHHHHHHHHh--cCceEEEEeHHHHH-HhH-HHHHHHhCCCCCE
Confidence 368999998 4433 22344588888887777665544 44 37899999876654 222 3445454 4787
Q ss_pred EEEec
Q 009017 92 IITSN 96 (546)
Q Consensus 92 IvLSs 96 (546)
|+.-.
T Consensus 73 IveIP 77 (115)
T 3aon_B 73 IILIP 77 (115)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77644
No 500
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=22.47 E-value=3.4e+02 Score=25.48 Aligned_cols=73 Identities=5% Similarity=0.123 Sum_probs=44.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CCH-------HH--HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHh
Q 009017 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-YNE-------NE--ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (546)
Q Consensus 17 ~~rILIVDDD~~~~~~L~~~Le~~Gy~V~~a-ss~-------~e--ALe~L~~~~~~pDLVIlDl~mp~~~dGlellr~L 86 (546)
|++|||..-...+...+...|.+.|++|..+ .+. +. .+..+.. ....++..|+. +--.+.+.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~--~~v~~v~~D~~-----d~~~l~~~~ 74 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQS--LGVILLEGDIN-----DHETLVKAI 74 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHH--TTCEEEECCTT-----CHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHh--CCCEEEEeCCC-----CHHHHHHHH
Confidence 3579999988888888888777778887643 332 22 2223333 34667777764 222344555
Q ss_pred CCCcEEEEec
Q 009017 87 KDLPTIITSN 96 (546)
Q Consensus 87 r~iPIIvLSs 96 (546)
+.+-+|+...
T Consensus 75 ~~~d~vi~~a 84 (307)
T 2gas_A 75 KQVDIVICAA 84 (307)
T ss_dssp TTCSEEEECS
T ss_pred hCCCEEEECC
Confidence 6666665543
Done!