Query 009019
Match_columns 546
No_of_seqs 281 out of 3141
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2.7E-87 5.8E-92 743.3 48.4 472 1-499 137-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 3.5E-83 7.6E-88 715.7 54.6 472 2-498 133-616 (617)
3 PLN03211 ABC transporter G-25; 100.0 9.9E-82 2.1E-86 705.3 52.0 461 3-495 175-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 9.5E-82 2.1E-86 753.5 49.4 477 4-499 178-698 (1394)
5 PLN03140 ABC transporter G fam 100.0 2.8E-79 6.1E-84 730.4 53.3 467 3-498 988-1469(1470)
6 PLN03140 ABC transporter G fam 100.0 6.1E-79 1.3E-83 727.5 49.6 470 9-495 311-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 5.3E-77 1.1E-81 712.7 50.7 463 2-496 870-1391(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1E-73 2.2E-78 646.7 38.6 490 3-509 228-744 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 8.7E-74 1.9E-78 647.2 29.4 469 1-499 897-1387(1391)
10 COG1126 GlnQ ABC-type polar am 99.9 9.6E-27 2.1E-31 220.7 13.9 116 1-122 108-223 (240)
11 COG1135 AbcC ABC-type metal io 99.9 1.7E-26 3.6E-31 229.4 12.9 117 1-123 113-230 (339)
12 COG4555 NatA ABC-type Na+ tran 99.9 1.1E-25 2.4E-30 210.7 11.9 118 1-124 105-222 (245)
13 COG1122 CbiO ABC-type cobalt t 99.9 4E-25 8.6E-30 218.0 12.8 118 1-124 110-228 (235)
14 COG1125 OpuBA ABC-type proline 99.9 9.5E-25 2.1E-29 211.2 14.3 127 2-147 106-235 (309)
15 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.1E-25 1.3E-29 216.4 13.2 112 6-124 116-227 (254)
16 COG1131 CcmA ABC-type multidru 99.9 1.1E-24 2.4E-29 222.8 15.0 118 4-127 111-229 (293)
17 COG1120 FepC ABC-type cobalami 99.9 9.9E-25 2.1E-29 215.9 13.1 113 5-123 114-227 (258)
18 COG1127 Ttg2A ABC-type transpo 99.9 1.5E-24 3.3E-29 208.7 13.9 118 1-124 116-235 (263)
19 COG3638 ABC-type phosphate/pho 99.9 5.7E-24 1.2E-28 204.3 11.4 114 5-124 123-237 (258)
20 COG0444 DppD ABC-type dipeptid 99.9 1.9E-23 4.1E-28 210.1 14.3 118 3-123 124-242 (316)
21 TIGR02314 ABC_MetN D-methionin 99.9 2.9E-23 6.2E-28 216.4 15.4 115 3-123 114-229 (343)
22 PRK13537 nodulation ABC transp 99.9 3.3E-23 7.2E-28 213.3 15.6 115 4-124 113-227 (306)
23 PRK13643 cbiO cobalt transport 99.9 5E-23 1.1E-27 210.3 16.2 127 3-135 117-247 (288)
24 COG4175 ProV ABC-type proline/ 99.9 4.6E-23 1E-27 204.8 14.3 130 1-149 136-266 (386)
25 COG1124 DppF ABC-type dipeptid 99.9 2.7E-23 5.9E-28 200.8 12.1 113 6-124 117-231 (252)
26 TIGR01188 drrA daunorubicin re 99.9 7.7E-23 1.7E-27 210.4 15.7 115 4-124 99-213 (302)
27 COG1136 SalX ABC-type antimicr 99.9 5.7E-23 1.2E-27 199.6 13.1 102 5-113 117-220 (226)
28 COG1123 ATPase components of v 99.9 7.5E-23 1.6E-27 219.5 14.7 119 2-124 125-244 (539)
29 PRK13637 cbiO cobalt transport 99.9 2.3E-22 5E-27 205.3 17.5 115 3-123 116-233 (287)
30 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-22 2.5E-27 213.2 15.3 116 2-123 107-223 (356)
31 cd03261 ABC_Org_Solvent_Resist 99.9 1.2E-22 2.6E-27 201.4 14.6 113 4-122 111-224 (235)
32 PRK13536 nodulation factor exp 99.9 1.4E-22 3E-27 211.3 15.8 115 4-124 147-261 (340)
33 TIGR03258 PhnT 2-aminoethylpho 99.9 1.3E-22 2.7E-27 213.1 15.5 116 2-123 110-227 (362)
34 PRK13634 cbiO cobalt transport 99.9 2.7E-22 5.8E-27 205.2 17.4 115 3-123 118-234 (290)
35 PRK13651 cobalt transporter AT 99.9 2.6E-22 5.6E-27 206.5 17.3 115 3-123 138-253 (305)
36 TIGR01288 nodI ATP-binding ABC 99.9 1.9E-22 4.1E-27 207.5 15.4 114 5-124 111-224 (303)
37 PRK13647 cbiO cobalt transport 99.9 3.8E-22 8.3E-27 202.4 17.1 113 4-122 113-225 (274)
38 COG3840 ThiQ ABC-type thiamine 99.9 1.4E-22 3E-27 187.2 12.5 114 4-123 104-218 (231)
39 TIGR01257 rim_protein retinal- 99.9 2E-20 4.4E-25 227.4 34.8 116 4-126 1036-1151(2272)
40 TIGR03265 PhnT2 putative 2-ami 99.9 2E-22 4.3E-27 211.2 15.3 117 2-124 107-224 (353)
41 PRK11432 fbpC ferric transport 99.9 2E-22 4.4E-27 210.8 15.2 116 2-123 109-225 (351)
42 PRK10851 sulfate/thiosulfate t 99.9 2.4E-22 5.3E-27 210.5 15.4 115 3-123 110-225 (353)
43 cd03219 ABC_Mj1267_LivG_branch 99.9 2.5E-22 5.4E-27 199.0 14.7 112 5-122 119-230 (236)
44 PRK13631 cbiO cobalt transport 99.9 5.5E-22 1.2E-26 205.3 17.5 126 3-134 149-278 (320)
45 COG1118 CysA ABC-type sulfate/ 99.9 1.6E-22 3.4E-27 200.7 12.6 117 2-124 110-227 (345)
46 COG2884 FtsE Predicted ATPase 99.9 2.5E-22 5.4E-27 186.8 12.8 111 2-118 110-220 (223)
47 PRK15079 oligopeptide ABC tran 99.9 3.4E-22 7.4E-27 207.8 15.5 116 2-123 133-250 (331)
48 PRK13636 cbiO cobalt transport 99.9 6.9E-22 1.5E-26 201.5 17.0 125 3-133 115-243 (283)
49 COG1116 TauB ABC-type nitrate/ 99.9 2.3E-22 4.9E-27 196.0 12.7 104 2-111 103-207 (248)
50 cd03256 ABC_PhnC_transporter A 99.9 4.2E-22 9.2E-27 197.9 14.9 111 6-122 121-232 (241)
51 PRK11153 metN DL-methionine tr 99.9 4.4E-22 9.5E-27 208.1 15.6 115 3-123 114-229 (343)
52 cd03218 ABC_YhbG The ABC trans 99.9 4.2E-22 9E-27 196.9 14.5 112 5-122 109-220 (232)
53 PRK11308 dppF dipeptide transp 99.9 4.9E-22 1.1E-26 206.3 15.7 115 3-123 127-243 (327)
54 cd03259 ABC_Carb_Solutes_like 99.9 3.5E-22 7.6E-27 195.0 13.8 107 5-117 106-213 (213)
55 cd03265 ABC_DrrA DrrA is the A 99.9 4.1E-22 8.9E-27 195.5 14.3 111 5-121 107-218 (220)
56 PRK11022 dppD dipeptide transp 99.9 5E-22 1.1E-26 206.2 15.6 118 3-123 124-242 (326)
57 PRK13638 cbiO cobalt transport 99.9 8E-22 1.7E-26 199.7 16.7 113 5-123 112-224 (271)
58 TIGR01186 proV glycine betaine 99.9 4.8E-22 1E-26 208.4 15.5 115 3-123 103-218 (363)
59 PRK13650 cbiO cobalt transport 99.9 8.5E-22 1.8E-26 200.4 16.9 114 3-123 114-228 (279)
60 PRK09473 oppD oligopeptide tra 99.9 5.6E-22 1.2E-26 206.2 15.7 118 3-123 132-250 (330)
61 PRK09536 btuD corrinoid ABC tr 99.9 4.2E-22 9E-27 211.4 14.8 113 5-123 115-227 (402)
62 PRK09452 potA putrescine/sperm 99.9 4.9E-22 1.1E-26 209.5 15.2 115 3-123 118-233 (375)
63 cd03296 ABC_CysA_sulfate_impor 99.9 5E-22 1.1E-26 197.4 14.4 111 6-122 113-224 (239)
64 PRK13641 cbiO cobalt transport 99.9 7.3E-22 1.6E-26 201.7 15.8 114 4-123 119-233 (287)
65 PRK13646 cbiO cobalt transport 99.9 8.3E-22 1.8E-26 201.2 15.9 115 3-123 118-234 (286)
66 PRK09493 glnQ glutamine ABC tr 99.9 6.9E-22 1.5E-26 196.5 14.9 113 4-122 111-223 (240)
67 TIGR02315 ABC_phnC phosphonate 99.9 5.6E-22 1.2E-26 197.3 14.0 112 5-122 121-233 (243)
68 PRK11264 putative amino-acid A 99.9 8.6E-22 1.9E-26 196.9 15.4 112 5-122 120-231 (250)
69 PRK13652 cbiO cobalt transport 99.9 7.9E-22 1.7E-26 200.4 15.3 114 4-123 112-226 (277)
70 TIGR01184 ntrCD nitrate transp 99.9 4.8E-22 1E-26 196.6 13.1 110 5-120 90-200 (230)
71 PRK15093 antimicrobial peptide 99.9 8.3E-22 1.8E-26 205.1 15.4 116 5-123 131-247 (330)
72 TIGR03522 GldA_ABC_ATP gliding 99.9 7.8E-22 1.7E-26 202.8 15.0 114 4-124 108-221 (301)
73 cd03294 ABC_Pro_Gly_Bertaine T 99.9 9.7E-22 2.1E-26 198.9 15.3 113 5-123 136-249 (269)
74 TIGR01187 potA spermidine/putr 99.9 9.9E-22 2.1E-26 204.1 15.7 114 4-123 75-189 (325)
75 PRK11607 potG putrescine trans 99.9 8.1E-22 1.8E-26 208.1 15.3 115 3-123 123-238 (377)
76 PRK11000 maltose/maltodextrin 99.9 8.6E-22 1.9E-26 207.8 15.4 115 3-123 107-222 (369)
77 COG4598 HisP ABC-type histidin 99.9 7E-22 1.5E-26 182.0 12.7 117 1-123 124-240 (256)
78 cd03258 ABC_MetN_methionine_tr 99.9 9.2E-22 2E-26 194.7 14.6 112 5-122 116-228 (233)
79 cd03301 ABC_MalK_N The N-termi 99.9 8.1E-22 1.8E-26 192.3 13.7 108 4-117 105-213 (213)
80 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.6E-22 2.1E-26 192.9 14.2 110 5-120 107-219 (220)
81 TIGR00960 3a0501s02 Type II (G 99.9 7.8E-22 1.7E-26 192.9 13.4 103 5-113 114-216 (216)
82 PRK13639 cbiO cobalt transport 99.9 2.3E-21 5E-26 196.8 17.3 114 4-123 112-225 (275)
83 cd03266 ABC_NatA_sodium_export 99.9 8.7E-22 1.9E-26 192.8 13.6 108 4-117 111-218 (218)
84 COG0411 LivG ABC-type branched 99.9 8.2E-22 1.8E-26 190.7 13.1 115 4-124 124-239 (250)
85 cd03260 ABC_PstB_phosphate_tra 99.9 9.5E-22 2.1E-26 193.8 13.8 111 6-121 116-226 (227)
86 COG4172 ABC-type uncharacteriz 99.9 1.1E-21 2.4E-26 200.1 14.2 118 1-124 397-516 (534)
87 COG1137 YhbG ABC-type (unclass 99.9 9.5E-22 2.1E-26 184.3 12.3 115 4-124 114-228 (243)
88 PRK13633 cobalt transporter AT 99.9 1.8E-21 3.8E-26 198.2 15.5 114 3-123 118-232 (280)
89 PRK13649 cbiO cobalt transport 99.9 2.8E-21 6E-26 196.7 16.9 114 4-123 119-233 (280)
90 PRK10771 thiQ thiamine transpo 99.9 1.6E-21 3.6E-26 192.9 14.7 112 6-123 106-218 (232)
91 PRK13644 cbiO cobalt transport 99.9 1.8E-21 3.9E-26 197.5 15.2 113 4-123 111-223 (274)
92 PRK11831 putative ABC transpor 99.9 1.7E-21 3.7E-26 197.1 15.0 111 6-122 120-231 (269)
93 PRK10895 lipopolysaccharide AB 99.9 1.6E-21 3.4E-26 194.0 14.4 113 4-122 112-224 (241)
94 TIGR02142 modC_ABC molybdenum 99.9 1.5E-21 3.2E-26 205.1 14.8 113 5-123 107-220 (354)
95 cd03263 ABC_subfamily_A The AB 99.9 1.6E-21 3.4E-26 191.3 13.9 111 5-122 109-219 (220)
96 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.8E-21 3.9E-26 193.8 14.6 113 4-122 108-223 (242)
97 PRK10619 histidine/lysine/argi 99.9 2.3E-21 5E-26 194.8 15.5 113 4-122 126-239 (257)
98 TIGR00972 3a0107s01c2 phosphat 99.9 2.3E-21 5.1E-26 193.6 15.2 112 4-122 115-230 (247)
99 TIGR02770 nickel_nikD nickel i 99.9 1.9E-21 4.1E-26 192.2 14.4 112 6-123 99-214 (230)
100 PRK11300 livG leucine/isoleuci 99.9 1.8E-21 4E-26 195.1 14.4 110 7-122 131-241 (255)
101 PRK13635 cbiO cobalt transport 99.9 3.7E-21 8E-26 195.7 16.8 114 3-123 114-228 (279)
102 cd03226 ABC_cobalt_CbiO_domain 99.9 1.5E-21 3.3E-26 189.4 13.3 101 8-114 105-205 (205)
103 PRK10070 glycine betaine trans 99.9 2.3E-21 4.9E-26 205.7 15.7 114 4-123 139-253 (400)
104 TIGR01978 sufC FeS assembly AT 99.9 2.5E-21 5.4E-26 192.6 15.0 112 7-123 120-233 (243)
105 cd03269 ABC_putative_ATPase Th 99.9 1.7E-21 3.8E-26 189.6 13.6 108 4-117 103-210 (210)
106 COG3839 MalK ABC-type sugar tr 99.9 1.1E-21 2.3E-26 201.4 12.6 118 1-124 105-223 (338)
107 TIGR03415 ABC_choXWV_ATP choli 99.9 2.4E-21 5.3E-26 204.1 15.6 115 3-123 138-253 (382)
108 PRK13648 cbiO cobalt transport 99.9 4.5E-21 9.7E-26 194.1 16.9 112 5-123 118-230 (269)
109 TIGR03771 anch_rpt_ABC anchore 99.9 2.2E-21 4.7E-26 191.0 14.1 110 6-122 90-199 (223)
110 PRK11614 livF leucine/isoleuci 99.9 1.7E-21 3.8E-26 193.2 13.4 111 7-123 114-225 (237)
111 COG1123 ATPase components of v 99.9 1.9E-21 4.1E-26 208.7 14.5 117 3-124 402-519 (539)
112 cd03235 ABC_Metallic_Cations A 99.9 2E-21 4.2E-26 189.7 13.4 106 5-117 108-213 (213)
113 TIGR03005 ectoine_ehuA ectoine 99.9 2.9E-21 6.2E-26 193.5 14.9 112 5-122 122-234 (252)
114 PRK11231 fecE iron-dicitrate t 99.9 2.4E-21 5.2E-26 194.5 14.3 111 6-122 115-225 (255)
115 cd03224 ABC_TM1139_LivF_branch 99.9 1.8E-21 4E-26 190.9 13.2 111 6-122 108-219 (222)
116 PRK11124 artP arginine transpo 99.9 3E-21 6.5E-26 192.1 14.9 111 5-121 117-227 (242)
117 cd03268 ABC_BcrA_bacitracin_re 99.9 1.7E-21 3.7E-26 189.4 12.6 105 7-117 104-208 (208)
118 PRK13645 cbiO cobalt transport 99.9 3.2E-21 6.9E-26 197.1 15.1 113 5-123 125-239 (289)
119 TIGR03411 urea_trans_UrtD urea 99.9 3.4E-21 7.4E-26 191.7 14.7 110 6-122 120-229 (242)
120 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4.1E-21 8.9E-26 190.5 15.2 112 5-123 108-220 (236)
121 PRK09984 phosphonate/organopho 99.9 2.7E-21 5.9E-26 194.8 14.1 111 5-121 128-239 (262)
122 PRK13640 cbiO cobalt transport 99.9 6.4E-21 1.4E-25 194.3 17.0 114 3-123 117-231 (282)
123 TIGR02769 nickel_nikE nickel i 99.9 3.8E-21 8.2E-26 194.2 15.0 113 5-123 125-239 (265)
124 PRK13548 hmuV hemin importer A 99.9 3.4E-21 7.5E-26 193.7 14.5 112 6-123 111-229 (258)
125 TIGR03873 F420-0_ABC_ATP propo 99.9 3.5E-21 7.6E-26 193.4 14.5 111 6-122 114-224 (256)
126 PRK14245 phosphate ABC transpo 99.9 4.1E-21 9E-26 192.1 14.9 115 6-123 119-233 (250)
127 cd03297 ABC_ModC_molybdenum_tr 99.9 3.5E-21 7.6E-26 188.1 13.9 106 6-117 108-214 (214)
128 cd03264 ABC_drug_resistance_li 99.9 3.1E-21 6.7E-26 188.0 13.4 106 5-117 106-211 (211)
129 PRK10253 iron-enterobactin tra 99.9 3.9E-21 8.5E-26 194.1 14.6 112 6-123 120-232 (265)
130 COG4161 ArtP ABC-type arginine 99.9 3.2E-21 6.8E-26 174.8 12.3 114 1-120 113-226 (242)
131 PRK11144 modC molybdate transp 99.9 3.9E-21 8.5E-26 201.7 14.9 111 7-123 106-217 (352)
132 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5.1E-21 1.1E-25 188.5 14.6 108 4-117 117-224 (224)
133 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.8E-21 8.3E-26 187.4 13.6 106 6-117 105-211 (211)
134 PRK10575 iron-hydroxamate tran 99.9 4.5E-21 9.7E-26 193.6 14.3 111 6-122 124-235 (265)
135 cd03225 ABC_cobalt_CbiO_domain 99.9 3.9E-21 8.5E-26 187.2 13.3 102 5-112 110-211 (211)
136 PRK15112 antimicrobial peptide 99.9 5.1E-21 1.1E-25 193.5 14.6 112 5-122 124-237 (267)
137 TIGR03740 galliderm_ABC gallid 99.9 3.9E-21 8.5E-26 189.0 13.2 107 8-120 103-209 (223)
138 PRK14268 phosphate ABC transpo 99.9 7.1E-21 1.5E-25 191.4 15.4 110 6-122 127-240 (258)
139 cd03299 ABC_ModC_like Archeal 99.9 6.7E-21 1.5E-25 188.9 15.0 113 5-123 105-218 (235)
140 COG1117 PstB ABC-type phosphat 99.9 1.7E-21 3.6E-26 184.5 9.7 116 4-123 120-236 (253)
141 cd03267 ABC_NatA_like Similar 99.9 5.8E-21 1.3E-25 189.6 14.1 108 4-117 128-236 (236)
142 cd03292 ABC_FtsE_transporter F 99.9 4.6E-21 1E-25 187.0 13.1 103 5-113 112-214 (214)
143 TIGR02673 FtsE cell division A 99.9 4.7E-21 1E-25 187.1 13.2 102 5-112 113-214 (214)
144 PRK14273 phosphate ABC transpo 99.9 7.7E-21 1.7E-25 190.6 15.0 111 6-123 123-237 (254)
145 PRK14242 phosphate transporter 99.8 7.9E-21 1.7E-25 190.4 14.8 114 6-122 122-235 (253)
146 PRK03695 vitamin B12-transport 99.8 9.9E-21 2.2E-25 189.3 15.1 112 5-122 102-220 (248)
147 PRK11629 lolD lipoprotein tran 99.8 8.9E-21 1.9E-25 187.7 14.6 109 4-119 120-229 (233)
148 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 4.9E-21 1.1E-25 187.4 12.6 102 5-113 116-218 (218)
149 cd03234 ABCG_White The White s 99.8 9.3E-21 2E-25 186.7 14.5 105 8-117 121-226 (226)
150 cd03300 ABC_PotA_N PotA is an 99.8 1.1E-20 2.4E-25 187.1 15.0 112 5-122 106-218 (232)
151 PRK14244 phosphate ABC transpo 99.8 9.7E-21 2.1E-25 189.6 14.8 114 6-122 122-235 (251)
152 TIGR01277 thiQ thiamine ABC tr 99.8 8.6E-21 1.9E-25 185.3 14.0 106 7-118 106-212 (213)
153 PRK11701 phnK phosphonate C-P 99.8 1.1E-20 2.4E-25 190.0 15.1 111 6-122 127-239 (258)
154 PRK14247 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 189.0 14.9 112 5-123 118-233 (250)
155 PRK10418 nikD nickel transport 99.8 1.1E-20 2.3E-25 189.7 14.7 109 8-122 116-228 (254)
156 PRK15056 manganese/iron transp 99.8 9.7E-21 2.1E-25 191.9 14.5 110 6-122 119-228 (272)
157 PRK13632 cbiO cobalt transport 99.8 1.1E-20 2.4E-25 191.4 14.8 113 4-123 117-230 (271)
158 COG4152 ABC-type uncharacteriz 99.8 5.5E-21 1.2E-25 184.1 11.7 120 1-126 102-221 (300)
159 PF01061 ABC2_membrane: ABC-2 99.8 1.5E-22 3.3E-27 194.6 0.8 208 224-436 1-210 (210)
160 cd03262 ABC_HisP_GlnQ_permease 99.8 9E-21 1.9E-25 184.9 13.3 103 5-113 111-213 (213)
161 CHL00131 ycf16 sulfate ABC tra 99.8 1.7E-20 3.6E-25 187.8 15.5 111 7-122 127-239 (252)
162 TIGR02323 CP_lyasePhnK phospho 99.8 1.4E-20 3E-25 188.6 14.9 111 6-122 124-236 (253)
163 PRK15134 microcin C ABC transp 99.8 9.6E-21 2.1E-25 209.3 15.1 115 3-123 127-245 (529)
164 PRK11247 ssuB aliphatic sulfon 99.8 9.6E-21 2.1E-25 190.4 13.6 108 7-120 111-219 (257)
165 PRK10908 cell division protein 99.8 1.2E-20 2.7E-25 185.3 14.1 104 5-114 113-216 (222)
166 TIGR00968 3a0106s01 sulfate AB 99.8 1.4E-20 2.9E-25 187.0 14.5 113 5-123 106-219 (237)
167 cd03257 ABC_NikE_OppD_transpor 99.8 1.1E-20 2.4E-25 186.1 13.7 101 11-117 126-228 (228)
168 PRK09700 D-allose transporter 99.8 1.1E-20 2.4E-25 208.0 15.2 112 5-122 121-232 (510)
169 PRK10744 pstB phosphate transp 99.8 1.5E-20 3.2E-25 189.3 14.9 111 5-122 128-242 (260)
170 PRK09580 sufC cysteine desulfu 99.8 2E-20 4.3E-25 186.8 15.7 112 7-123 121-234 (248)
171 COG4172 ABC-type uncharacteriz 99.8 9E-21 2E-25 193.5 13.3 120 1-123 126-246 (534)
172 PRK13642 cbiO cobalt transport 99.8 2.7E-20 5.9E-25 189.2 16.9 113 4-123 115-228 (277)
173 PRK11248 tauB taurine transpor 99.8 1.3E-20 2.9E-25 189.2 14.4 111 4-120 103-216 (255)
174 TIGR03269 met_CoM_red_A2 methy 99.8 1.3E-20 2.7E-25 207.9 15.3 116 4-125 143-259 (520)
175 PRK14267 phosphate ABC transpo 99.8 1.7E-20 3.6E-25 188.0 14.8 111 5-122 121-235 (253)
176 PRK14250 phosphate ABC transpo 99.8 1.7E-20 3.6E-25 186.8 14.6 110 7-122 108-219 (241)
177 PRK13545 tagH teichoic acids e 99.8 2E-20 4.4E-25 201.6 16.2 116 4-125 118-233 (549)
178 COG3842 PotA ABC-type spermidi 99.8 4.9E-21 1.1E-25 197.5 11.0 114 3-122 110-224 (352)
179 PRK10938 putative molybdenum t 99.8 1.1E-20 2.4E-25 206.9 14.4 111 7-123 113-223 (490)
180 PRK10419 nikE nickel transport 99.8 1.8E-20 4E-25 189.5 14.7 112 5-122 126-239 (268)
181 PRK13549 xylose transporter AT 99.8 1.2E-20 2.7E-25 207.3 14.5 112 5-122 380-492 (506)
182 TIGR02211 LolD_lipo_ex lipopro 99.8 1.5E-20 3.2E-25 184.4 13.5 103 5-114 117-220 (221)
183 PRK10762 D-ribose transporter 99.8 1.4E-20 3E-25 206.7 14.7 112 5-122 117-228 (501)
184 PRK13547 hmuV hemin importer A 99.8 1.9E-20 4.1E-25 189.8 14.5 111 6-122 122-242 (272)
185 PRK14258 phosphate ABC transpo 99.8 2.7E-20 5.8E-25 187.6 15.4 117 5-123 122-244 (261)
186 PRK10261 glutathione transport 99.8 1.6E-20 3.5E-25 211.0 15.3 114 4-123 437-552 (623)
187 PRK14274 phosphate ABC transpo 99.8 2.4E-20 5.3E-25 187.6 15.0 111 5-122 127-241 (259)
188 COG4608 AppF ABC-type oligopep 99.8 1.8E-20 3.8E-25 185.0 13.4 116 3-124 82-199 (268)
189 PRK13549 xylose transporter AT 99.8 1.5E-20 3.3E-25 206.6 14.4 112 5-122 119-230 (506)
190 PRK14235 phosphate transporter 99.8 2.9E-20 6.3E-25 188.0 15.2 111 5-122 135-249 (267)
191 PRK14239 phosphate transporter 99.8 2.8E-20 6E-25 186.2 14.9 109 7-122 122-234 (252)
192 PRK14270 phosphate ABC transpo 99.8 3.2E-20 7E-25 185.8 14.9 111 5-122 119-233 (251)
193 PRK14237 phosphate transporter 99.8 3.5E-20 7.7E-25 187.3 15.3 115 5-122 135-249 (267)
194 PRK14256 phosphate ABC transpo 99.8 3.7E-20 8.1E-25 185.4 15.2 111 5-122 120-234 (252)
195 PRK14241 phosphate transporter 99.8 3.4E-20 7.4E-25 186.4 14.8 112 5-123 120-241 (258)
196 PRK14269 phosphate ABC transpo 99.8 3.9E-20 8.5E-25 184.7 15.1 110 6-122 115-228 (246)
197 PRK15134 microcin C ABC transp 99.8 2.4E-20 5.1E-25 206.2 14.9 114 4-123 399-514 (529)
198 PRK15439 autoinducer 2 ABC tra 99.8 2.5E-20 5.4E-25 205.1 14.9 111 6-122 117-227 (510)
199 PRK14262 phosphate ABC transpo 99.8 3.5E-20 7.6E-25 185.4 14.7 115 6-123 119-233 (250)
200 PRK14253 phosphate ABC transpo 99.8 3.9E-20 8.6E-25 184.9 14.9 114 6-122 118-231 (249)
201 PRK13546 teichoic acids export 99.8 5.6E-20 1.2E-24 185.5 16.1 114 5-124 119-232 (264)
202 PRK10584 putative ABC transpor 99.8 3.4E-20 7.3E-25 182.9 14.0 104 5-115 122-226 (228)
203 PRK10762 D-ribose transporter 99.8 2.3E-20 5E-25 204.9 14.2 112 5-122 370-482 (501)
204 PRK14248 phosphate ABC transpo 99.8 4.1E-20 8.8E-25 186.9 14.7 109 7-122 138-250 (268)
205 TIGR03410 urea_trans_UrtE urea 99.8 2.8E-20 6.2E-25 183.6 13.1 109 8-122 109-219 (230)
206 TIGR03269 met_CoM_red_A2 methy 99.8 3.7E-20 8E-25 204.2 15.4 113 6-124 399-517 (520)
207 PRK11288 araG L-arabinose tran 99.8 3.1E-20 6.8E-25 203.9 14.7 109 7-121 373-482 (501)
208 PRK10982 galactose/methyl gala 99.8 3.9E-20 8.4E-25 202.7 15.3 112 5-122 110-221 (491)
209 PRK09700 D-allose transporter 99.8 3.2E-20 7E-25 204.2 14.7 107 7-119 386-493 (510)
210 PRK15439 autoinducer 2 ABC tra 99.8 2.4E-20 5.2E-25 205.2 13.7 109 7-121 380-489 (510)
211 PRK14236 phosphate transporter 99.8 4.8E-20 1E-24 186.9 14.7 113 7-122 142-254 (272)
212 cd03214 ABC_Iron-Siderophores_ 99.8 3.4E-20 7.4E-25 176.5 12.5 101 11-117 79-180 (180)
213 PRK10261 glutathione transport 99.8 3E-20 6.4E-25 208.9 14.1 115 3-123 139-257 (623)
214 PRK14240 phosphate transporter 99.8 7.7E-20 1.7E-24 182.9 15.3 111 5-122 118-232 (250)
215 PRK14272 phosphate ABC transpo 99.8 7.3E-20 1.6E-24 183.2 15.0 110 7-123 122-235 (252)
216 PRK14257 phosphate ABC transpo 99.8 6.1E-20 1.3E-24 190.8 14.9 113 8-123 200-312 (329)
217 PRK14275 phosphate ABC transpo 99.8 6.2E-20 1.3E-24 187.4 14.7 109 7-122 156-268 (286)
218 TIGR01257 rim_protein retinal- 99.8 4.5E-20 9.7E-25 224.4 15.8 119 3-127 2044-2162(2272)
219 cd03252 ABCC_Hemolysin The ABC 99.8 5.2E-20 1.1E-24 182.6 13.6 90 31-123 135-224 (237)
220 PRK14260 phosphate ABC transpo 99.8 7.1E-20 1.5E-24 184.3 14.7 111 5-122 122-241 (259)
221 PRK14263 phosphate ABC transpo 99.8 7.6E-20 1.6E-24 184.3 14.9 115 6-123 122-244 (261)
222 PRK14249 phosphate ABC transpo 99.8 8.7E-20 1.9E-24 182.7 15.1 113 7-122 121-233 (251)
223 PRK14271 phosphate ABC transpo 99.8 9.9E-20 2.1E-24 185.0 15.4 116 5-123 135-250 (276)
224 PRK09544 znuC high-affinity zi 99.8 5.5E-20 1.2E-24 184.3 13.4 108 8-122 99-207 (251)
225 PRK14251 phosphate ABC transpo 99.8 8.3E-20 1.8E-24 182.8 14.5 109 7-122 121-233 (251)
226 TIGR02633 xylG D-xylose ABC tr 99.8 6.6E-20 1.4E-24 201.3 14.8 111 5-121 116-227 (500)
227 COG4559 ABC-type hemin transpo 99.8 6.8E-20 1.5E-24 173.3 12.4 113 5-123 111-229 (259)
228 PRK14259 phosphate ABC transpo 99.8 9.5E-20 2.1E-24 184.4 14.5 110 7-123 128-252 (269)
229 TIGR02633 xylG D-xylose ABC tr 99.8 7.7E-20 1.7E-24 200.7 14.7 109 6-120 379-488 (500)
230 PRK14261 phosphate ABC transpo 99.8 1.2E-19 2.7E-24 181.8 14.7 114 6-122 122-235 (253)
231 PRK14266 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 181.3 14.7 114 6-122 119-232 (250)
232 PRK14265 phosphate ABC transpo 99.8 1.3E-19 2.9E-24 183.9 14.8 109 8-123 136-257 (274)
233 cd03245 ABCC_bacteriocin_expor 99.8 8.1E-20 1.8E-24 179.1 12.5 107 8-117 108-220 (220)
234 PRK14255 phosphate ABC transpo 99.8 1.6E-19 3.5E-24 180.7 14.9 109 7-122 122-234 (252)
235 PRK11288 araG L-arabinose tran 99.8 1.1E-19 2.5E-24 199.5 14.9 108 5-118 116-223 (501)
236 COG4148 ModC ABC-type molybdat 99.8 4E-20 8.7E-25 181.1 9.9 112 7-124 106-218 (352)
237 PRK14246 phosphate ABC transpo 99.8 2.1E-19 4.6E-24 180.7 15.3 112 5-123 125-240 (257)
238 COG4604 CeuD ABC-type enteroch 99.8 3.1E-20 6.7E-25 173.7 8.5 115 4-124 110-225 (252)
239 PRK14243 phosphate transporter 99.8 1.7E-19 3.7E-24 182.1 14.6 110 7-123 125-247 (264)
240 KOG0055 Multidrug/pheromone ex 99.8 3E-18 6.5E-23 196.7 26.3 103 18-124 474-576 (1228)
241 COG4586 ABC-type uncharacteriz 99.8 1.1E-19 2.4E-24 177.7 12.5 119 2-126 129-248 (325)
242 PRK14238 phosphate transporter 99.8 1.6E-19 3.6E-24 182.9 14.2 109 7-122 141-253 (271)
243 cd03270 ABC_UvrA_I The excisio 99.8 2E-19 4.3E-24 177.5 14.3 100 11-117 118-226 (226)
244 cd03251 ABCC_MsbA MsbA is an e 99.8 1.6E-19 3.4E-24 178.7 13.5 105 11-123 118-224 (234)
245 TIGR02982 heterocyst_DevA ABC 99.8 1.6E-19 3.5E-24 177.2 13.4 103 4-113 116-219 (220)
246 cd03254 ABCC_Glucan_exporter_l 99.8 1.5E-19 3.4E-24 178.2 13.0 112 9-123 108-225 (229)
247 PRK11174 cysteine/glutathione 99.8 1.4E-19 3.1E-24 202.4 14.3 113 8-124 453-572 (588)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.2E-19 4.7E-24 178.3 14.0 91 31-124 136-226 (238)
249 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.7E-19 3.6E-24 174.6 12.8 92 33-126 103-195 (200)
250 PRK14254 phosphate ABC transpo 99.8 2.2E-19 4.9E-24 183.2 14.3 110 6-122 153-267 (285)
251 PRK14264 phosphate ABC transpo 99.8 2.6E-19 5.7E-24 184.4 14.6 113 7-122 174-287 (305)
252 COG1119 ModF ABC-type molybden 99.8 1.8E-19 3.9E-24 174.6 11.9 109 4-118 146-256 (257)
253 PRK10982 galactose/methyl gala 99.8 2.3E-19 5E-24 196.6 14.1 109 6-120 367-476 (491)
254 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.6E-19 5.6E-24 181.6 13.1 114 8-124 106-225 (275)
255 COG4987 CydC ABC-type transpor 99.8 1.8E-19 4E-24 190.4 12.3 114 7-124 441-561 (573)
256 COG4181 Predicted ABC-type tra 99.8 2.3E-19 4.9E-24 164.4 10.6 105 4-115 121-226 (228)
257 TIGR03608 L_ocin_972_ABC putat 99.8 3.5E-19 7.6E-24 172.8 12.7 97 5-108 110-206 (206)
258 PRK11176 lipid transporter ATP 99.8 4.6E-19 1E-23 198.1 15.2 114 7-124 447-567 (582)
259 PRK14252 phosphate ABC transpo 99.8 7.4E-19 1.6E-23 177.4 15.1 109 7-122 135-247 (265)
260 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.8E-19 8.3E-24 202.4 14.5 112 7-124 555-673 (686)
261 cd03237 ABC_RNaseL_inhibitor_d 99.8 6.3E-19 1.4E-23 176.1 14.3 107 9-121 95-204 (246)
262 cd03232 ABC_PDR_domain2 The pl 99.8 3.6E-19 7.7E-24 171.2 11.8 84 34-117 108-192 (192)
263 cd03213 ABCG_EPDR ABCG transpo 99.8 4.5E-19 9.7E-24 170.9 12.3 84 34-117 111-194 (194)
264 cd03253 ABCC_ATM1_transporter 99.8 6.1E-19 1.3E-23 174.7 13.4 90 31-123 134-223 (236)
265 COG4988 CydD ABC-type transpor 99.8 4.3E-19 9.3E-24 190.1 13.0 114 7-124 424-543 (559)
266 PRK11160 cysteine/glutathione 99.8 6.2E-19 1.3E-23 196.7 14.7 114 7-124 443-562 (574)
267 PRK15177 Vi polysaccharide exp 99.8 8.1E-19 1.8E-23 171.6 13.8 110 12-128 87-196 (213)
268 TIGR01842 type_I_sec_PrtD type 99.8 6.8E-19 1.5E-23 195.2 14.5 98 23-123 444-541 (544)
269 PRK10790 putative multidrug tr 99.8 1.1E-18 2.3E-23 195.6 15.5 113 7-123 443-562 (592)
270 cd03288 ABCC_SUR2 The SUR doma 99.8 1.1E-18 2.4E-23 175.4 13.9 90 31-123 153-242 (257)
271 cd03233 ABC_PDR_domain1 The pl 99.8 7.5E-19 1.6E-23 170.4 12.1 89 29-117 113-202 (202)
272 cd03271 ABC_UvrA_II The excisi 99.8 1.2E-18 2.7E-23 174.7 13.9 105 8-119 147-261 (261)
273 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 9E-19 2E-23 200.1 14.7 112 7-124 582-700 (710)
274 cd03216 ABC_Carb_Monos_I This 99.8 9.1E-19 2E-23 164.1 12.0 81 34-115 82-162 (163)
275 TIGR03375 type_I_sec_LssB type 99.8 9.3E-19 2E-23 199.5 14.5 114 7-124 568-688 (694)
276 cd03238 ABC_UvrA The excision 99.8 1.4E-18 3.1E-23 164.6 13.3 99 11-116 68-169 (176)
277 COG4525 TauB ABC-type taurine 99.8 1.7E-18 3.6E-23 161.9 13.3 119 1-125 104-225 (259)
278 COG1132 MdlB ABC-type multidru 99.8 1E-18 2.3E-23 194.7 14.2 102 19-124 451-552 (567)
279 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.1E-18 2.5E-23 175.1 13.1 106 5-117 115-220 (255)
280 COG0410 LivF ABC-type branched 99.8 1.1E-18 2.4E-23 167.9 12.3 109 10-124 116-226 (237)
281 COG2274 SunT ABC-type bacterio 99.8 6.2E-19 1.3E-23 198.1 11.8 102 19-124 595-696 (709)
282 cd03244 ABCC_MRP_domain2 Domai 99.8 1.2E-18 2.7E-23 170.8 12.5 107 8-118 107-220 (221)
283 TIGR02203 MsbA_lipidA lipid A 99.8 1.3E-18 2.9E-23 193.9 14.2 113 7-123 436-555 (571)
284 TIGR01193 bacteriocin_ABC ABC- 99.8 1.3E-18 2.9E-23 198.7 14.5 112 8-124 579-697 (708)
285 TIGR01846 type_I_sec_HlyB type 99.8 1.7E-18 3.8E-23 197.3 14.9 113 8-124 561-680 (694)
286 PRK10938 putative molybdenum t 99.8 1.1E-18 2.4E-23 191.1 12.6 105 7-117 378-485 (490)
287 cd03231 ABC_CcmA_heme_exporter 99.8 1.4E-18 3.1E-23 168.2 12.0 96 7-108 103-198 (201)
288 PRK13538 cytochrome c biogenes 99.8 1.2E-18 2.7E-23 169.0 11.5 96 7-108 107-202 (204)
289 TIGR01192 chvA glucan exporter 99.8 2E-18 4.3E-23 193.0 14.7 98 23-124 461-558 (585)
290 cd03230 ABC_DR_subfamily_A Thi 99.8 1.3E-18 2.7E-23 164.6 10.6 78 35-113 96-173 (173)
291 PRK10789 putative multidrug tr 99.8 2.4E-18 5.1E-23 191.9 14.6 113 8-124 419-538 (569)
292 PRK13543 cytochrome c biogenes 99.8 2E-18 4.4E-23 168.8 12.4 98 7-110 115-212 (214)
293 PRK13657 cyclic beta-1,2-gluca 99.8 2.7E-18 5.8E-23 192.2 15.1 113 7-123 438-557 (588)
294 cd03248 ABCC_TAP TAP, the Tran 99.8 1.6E-18 3.5E-23 170.7 11.6 96 10-113 129-226 (226)
295 PRK10247 putative ABC transpor 99.8 1.8E-18 3.8E-23 170.5 11.7 105 7-118 114-221 (225)
296 TIGR02324 CP_lyasePhnL phospho 99.8 3.2E-18 6.9E-23 168.3 12.9 99 5-109 124-223 (224)
297 TIGR00958 3a01208 Conjugate Tr 99.8 2.5E-18 5.5E-23 196.2 14.1 112 7-124 584-702 (711)
298 cd03246 ABCC_Protease_Secretio 99.8 1.8E-18 3.8E-23 163.6 10.5 77 35-113 97-173 (173)
299 cd03215 ABC_Carb_Monos_II This 99.8 1.6E-18 3.5E-23 165.2 10.3 78 35-113 105-182 (182)
300 cd03247 ABCC_cytochrome_bd The 99.8 2.7E-18 5.8E-23 163.1 11.4 83 32-117 96-178 (178)
301 TIGR01166 cbiO cobalt transpor 99.8 2.5E-18 5.5E-23 164.9 11.4 85 5-94 103-187 (190)
302 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.2E-18 7E-23 166.3 11.9 86 31-119 122-207 (207)
303 PRK15064 ABC transporter ATP-b 99.8 4.4E-18 9.6E-23 188.2 14.3 108 7-123 132-241 (530)
304 PRK10535 macrolide transporter 99.8 5.5E-18 1.2E-22 191.4 14.6 113 4-123 119-231 (648)
305 TIGR02204 MsbA_rel ABC transpo 99.8 5.8E-18 1.3E-22 189.0 14.4 113 7-123 443-562 (576)
306 cd03229 ABC_Class3 This class 99.8 3.7E-18 7.9E-23 162.2 10.6 77 35-112 101-178 (178)
307 KOG0055 Multidrug/pheromone ex 99.8 2.6E-18 5.6E-23 197.2 11.3 103 18-124 1111-1213(1228)
308 PRK15064 ABC transporter ATP-b 99.8 5.5E-18 1.2E-22 187.4 13.6 108 7-123 415-524 (530)
309 KOG0058 Peptide exporter, ABC 99.7 4.4E-18 9.6E-23 185.7 12.3 103 18-124 589-691 (716)
310 KOG0057 Mitochondrial Fe/S clu 99.7 6.7E-18 1.5E-22 178.8 12.6 102 19-124 473-574 (591)
311 PRK13409 putative ATPase RIL; 99.7 6.2E-18 1.3E-22 188.3 12.8 105 8-119 432-537 (590)
312 PRK13539 cytochrome c biogenes 99.7 8.4E-18 1.8E-22 163.6 11.5 95 8-110 106-200 (207)
313 COG1129 MglA ABC-type sugar tr 99.7 1.5E-17 3.2E-22 177.8 14.3 112 2-119 118-229 (500)
314 PRK11819 putative ABC transpor 99.7 1.1E-17 2.4E-22 185.9 13.8 106 7-122 142-248 (556)
315 PTZ00265 multidrug resistance 99.7 8.8E-18 1.9E-22 203.3 13.8 113 8-123 1326-1451(1466)
316 cd03291 ABCC_CFTR1 The CFTR su 99.7 2.2E-17 4.8E-22 168.1 14.4 90 31-123 156-246 (282)
317 cd03222 ABC_RNaseL_inhibitor T 99.7 1.1E-17 2.5E-22 158.6 11.3 86 35-121 72-160 (177)
318 PRK10636 putative ABC transpor 99.7 1.3E-17 2.8E-22 187.9 13.8 109 7-124 407-517 (638)
319 COG0396 sufC Cysteine desulfur 99.7 3.1E-17 6.8E-22 157.4 14.2 122 5-133 118-242 (251)
320 TIGR01189 ccmA heme ABC export 99.7 1.1E-17 2.5E-22 161.4 11.0 92 8-107 106-197 (198)
321 KOG0059 Lipid exporter ABCA1 a 99.7 9.4E-18 2E-22 194.9 12.4 121 2-128 671-791 (885)
322 PRK10636 putative ABC transpor 99.7 1.9E-17 4.2E-22 186.5 13.8 106 7-121 126-233 (638)
323 cd03290 ABCC_SUR1_N The SUR do 99.7 1.9E-17 4.1E-22 162.2 11.9 100 10-112 110-218 (218)
324 PTZ00265 multidrug resistance 99.7 1.9E-17 4.2E-22 200.3 14.0 101 8-111 547-655 (1466)
325 cd03250 ABCC_MRP_domain1 Domai 99.7 2.3E-17 4.9E-22 160.0 11.8 80 31-112 124-204 (204)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.7E-17 5.9E-22 182.7 14.1 107 8-124 141-248 (552)
327 cd03228 ABCC_MRP_Like The MRP 99.7 1.6E-17 3.4E-22 156.8 10.2 75 35-112 97-171 (171)
328 PRK13409 putative ATPase RIL; 99.7 2.2E-17 4.8E-22 183.9 13.0 98 7-111 190-287 (590)
329 PRK11147 ABC transporter ATPas 99.7 3.6E-17 7.8E-22 184.4 14.1 105 7-122 136-241 (635)
330 PRK10522 multidrug transporter 99.7 4.5E-17 9.8E-22 180.8 14.6 106 7-116 422-530 (547)
331 PRK00349 uvrA excinuclease ABC 99.7 3.1E-17 6.8E-22 189.2 13.7 110 6-123 466-584 (943)
332 TIGR01194 cyc_pep_trnsptr cycl 99.7 5.1E-17 1.1E-21 180.6 14.6 109 6-116 441-551 (555)
333 COG4107 PhnK ABC-type phosphon 99.7 5.4E-17 1.2E-21 149.1 11.8 115 5-124 126-241 (258)
334 COG4618 ArpD ABC-type protease 99.7 2.5E-17 5.4E-22 173.0 10.7 108 17-127 456-563 (580)
335 PLN03073 ABC transporter F fam 99.7 6E-17 1.3E-21 183.7 14.6 109 7-124 604-714 (718)
336 PLN03232 ABC transporter C fam 99.7 5.3E-17 1.1E-21 197.9 14.8 113 8-124 1339-1458(1495)
337 PLN03073 ABC transporter F fam 99.7 8.4E-17 1.8E-21 182.6 14.5 107 7-122 321-429 (718)
338 PLN03130 ABC transporter C fam 99.7 8.9E-17 1.9E-21 196.4 15.0 113 8-124 1342-1461(1622)
339 TIGR00630 uvra excinuclease AB 99.7 8.5E-17 1.8E-21 185.3 14.0 104 13-123 470-582 (924)
340 PRK13540 cytochrome c biogenes 99.7 5.4E-17 1.2E-21 157.0 10.5 92 8-106 106-197 (200)
341 cd03223 ABCD_peroxisomal_ALDP 99.7 8E-17 1.7E-21 151.4 10.7 75 32-111 89-163 (166)
342 COG4674 Uncharacterized ABC-ty 99.7 6.4E-17 1.4E-21 151.3 9.8 112 5-123 123-234 (249)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.2E-17 1.8E-21 147.8 10.5 77 32-112 68-144 (144)
344 COG5265 ATM1 ABC-type transpor 99.7 8.2E-17 1.8E-21 165.7 10.9 102 19-124 385-486 (497)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.7E-16 3.7E-21 176.3 14.3 104 9-121 422-528 (552)
346 TIGR00957 MRP_assoc_pro multi 99.7 1.6E-16 3.4E-21 194.1 15.1 113 8-124 1389-1508(1522)
347 PRK11819 putative ABC transpor 99.7 1.7E-16 3.8E-21 176.4 14.2 104 9-121 424-530 (556)
348 PLN03232 ABC transporter C fam 99.7 1.3E-16 2.9E-21 194.4 14.0 114 7-124 707-828 (1495)
349 PTZ00243 ABC transporter; Prov 99.7 2.3E-16 5E-21 192.4 14.8 114 7-124 1412-1533(1560)
350 PRK13541 cytochrome c biogenes 99.7 1.3E-16 2.7E-21 153.8 10.0 92 7-105 101-192 (195)
351 COG1129 MglA ABC-type sugar tr 99.7 2.3E-16 5.1E-21 168.6 12.5 111 2-118 373-484 (500)
352 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.6E-16 5.6E-21 146.3 11.1 77 35-112 81-157 (157)
353 KOG0056 Heavy metal exporter H 99.7 1.2E-16 2.6E-21 166.3 9.7 105 16-124 657-761 (790)
354 PLN03130 ABC transporter C fam 99.7 3E-16 6.4E-21 191.8 14.2 114 7-124 707-828 (1622)
355 COG3845 ABC-type uncharacteriz 99.7 4.7E-16 1E-20 163.5 13.5 111 2-118 113-223 (501)
356 TIGR01271 CFTR_protein cystic 99.7 3.7E-16 8E-21 190.3 14.6 114 7-124 1320-1440(1490)
357 TIGR02857 CydD thiol reductant 99.7 2.3E-16 5E-21 174.4 11.3 98 7-108 425-529 (529)
358 PRK00349 uvrA excinuclease ABC 99.7 6E-16 1.3E-20 178.7 14.7 108 9-123 809-926 (943)
359 PRK00635 excinuclease ABC subu 99.7 6.7E-16 1.5E-20 185.5 15.4 112 5-124 785-906 (1809)
360 PRK11147 ABC transporter ATPas 99.6 5.9E-16 1.3E-20 174.7 12.8 106 7-121 417-525 (635)
361 cd03279 ABC_sbcCD SbcCD and ot 99.6 1.4E-15 3.1E-20 148.6 12.2 92 15-112 109-210 (213)
362 PRK00635 excinuclease ABC subu 99.6 1.5E-15 3.2E-20 182.6 14.7 102 14-122 460-570 (1809)
363 TIGR00630 uvra excinuclease AB 99.6 1.8E-15 3.9E-20 174.4 14.4 107 9-122 807-923 (924)
364 TIGR00954 3a01203 Peroxysomal 99.6 1.2E-15 2.5E-20 172.7 12.6 98 7-109 551-652 (659)
365 TIGR00957 MRP_assoc_pro multi 99.6 1.9E-15 4E-20 184.7 14.1 100 22-124 749-850 (1522)
366 COG4167 SapF ABC-type antimicr 99.6 4.3E-15 9.3E-20 137.7 12.1 118 1-124 120-239 (267)
367 TIGR01271 CFTR_protein cystic 99.6 2.5E-15 5.3E-20 183.2 13.9 97 23-123 538-635 (1490)
368 TIGR02868 CydC thiol reductant 99.6 1.4E-15 3.1E-20 168.2 10.4 86 7-94 437-529 (529)
369 COG0488 Uup ATPase components 99.6 3.2E-15 6.9E-20 163.3 12.3 105 7-121 132-237 (530)
370 cd03278 ABC_SMC_barmotin Barmo 99.6 3.5E-15 7.5E-20 144.2 10.9 93 7-110 94-190 (197)
371 PTZ00243 ABC transporter; Prov 99.6 5.1E-15 1.1E-19 180.8 14.7 97 24-123 773-869 (1560)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.6 4.4E-15 9.5E-20 148.8 11.4 101 6-109 123-242 (251)
373 COG1134 TagH ABC-type polysacc 99.6 1.3E-14 2.9E-19 141.0 13.7 122 1-128 119-240 (249)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.6 6E-15 1.3E-19 147.5 11.7 104 7-112 111-236 (247)
375 COG4619 ABC-type uncharacteriz 99.6 5.6E-15 1.2E-19 135.3 9.8 101 7-113 110-212 (223)
376 cd03276 ABC_SMC6_euk Eukaryoti 99.6 5.2E-15 1.1E-19 143.1 10.1 96 7-112 90-192 (198)
377 COG1101 PhnK ABC-type uncharac 99.6 1.2E-14 2.7E-19 138.1 11.5 100 11-116 128-230 (263)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.6 8.6E-15 1.9E-19 145.7 10.9 77 30-109 154-234 (243)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.5 8.8E-15 1.9E-19 143.0 8.2 92 11-110 109-204 (212)
380 cd03240 ABC_Rad50 The catalyti 99.5 3.2E-14 7E-19 138.2 9.6 79 31-111 112-199 (204)
381 COG4778 PhnL ABC-type phosphon 99.5 2.8E-14 6E-19 131.0 8.4 104 2-110 124-227 (235)
382 COG4170 SapD ABC-type antimicr 99.5 1.7E-14 3.8E-19 136.3 5.8 116 6-124 132-248 (330)
383 COG4138 BtuD ABC-type cobalami 99.5 1.1E-14 2.4E-19 134.1 2.8 115 3-123 99-220 (248)
384 KOG0054 Multidrug resistance-a 99.5 1.9E-13 4.1E-18 160.8 13.1 114 8-124 611-731 (1381)
385 cd03239 ABC_SMC_head The struc 99.5 2.8E-13 6.1E-18 128.8 10.5 75 34-110 94-172 (178)
386 KOG0927 Predicted transporter 99.5 2.3E-13 5E-18 144.2 10.3 110 5-122 196-307 (614)
387 COG4133 CcmA ABC-type transpor 99.4 3.3E-13 7.1E-18 126.1 9.4 85 7-96 108-192 (209)
388 COG3845 ABC-type uncharacteriz 99.4 3.5E-13 7.6E-18 142.0 10.6 114 2-121 375-489 (501)
389 cd03277 ABC_SMC5_euk Eukaryoti 99.4 3.3E-13 7.2E-18 132.0 8.2 82 31-113 123-212 (213)
390 COG0488 Uup ATPase components 99.4 1.6E-12 3.5E-17 142.2 12.2 108 7-123 416-524 (530)
391 COG1245 Predicted ATPase, RNas 99.4 8.9E-13 1.9E-17 137.2 9.0 97 8-110 192-288 (591)
392 COG0178 UvrA Excinuclease ATPa 99.3 4.7E-12 1E-16 139.7 12.5 110 9-124 801-919 (935)
393 cd03241 ABC_RecN RecN ATPase i 99.3 2.3E-12 4.9E-17 131.1 9.3 76 34-112 170-249 (276)
394 cd03227 ABC_Class2 ABC-type Cl 99.3 3.9E-12 8.4E-17 119.1 9.5 75 34-110 77-155 (162)
395 cd03280 ABC_MutS2 MutS2 homolo 99.3 1.1E-12 2.3E-17 127.1 5.0 83 32-117 89-172 (200)
396 KOG0054 Multidrug resistance-a 99.3 7.8E-12 1.7E-16 147.4 12.8 113 8-124 1243-1362(1381)
397 COG4136 ABC-type uncharacteriz 99.3 4.5E-12 9.7E-17 114.4 7.9 90 4-99 109-199 (213)
398 TIGR00634 recN DNA repair prot 99.3 4.6E-12 9.9E-17 141.1 9.8 77 33-112 439-519 (563)
399 TIGR01247 drrB daunorubicin re 99.3 7.1E-10 1.5E-14 109.8 22.6 224 232-488 1-233 (236)
400 PRK10869 recombination and rep 99.3 1.3E-11 2.8E-16 136.7 10.6 77 33-112 429-509 (553)
401 TIGR00618 sbcc exonuclease Sbc 99.3 1.3E-11 2.8E-16 146.7 11.3 81 30-111 946-1036(1042)
402 KOG0062 ATPase component of AB 99.3 4.1E-12 8.8E-17 134.2 5.9 107 6-121 174-282 (582)
403 PHA02562 46 endonuclease subun 99.3 1.2E-11 2.6E-16 137.8 9.2 79 31-113 465-555 (562)
404 COG1245 Predicted ATPase, RNas 99.2 2E-11 4.2E-16 127.3 9.3 93 11-109 437-530 (591)
405 KOG0062 ATPase component of AB 99.2 2.7E-11 5.7E-16 128.1 10.1 100 7-115 459-559 (582)
406 COG4178 ABC-type uncharacteriz 99.2 1.5E-11 3.3E-16 134.5 8.5 100 7-109 487-587 (604)
407 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 6.6E-10 1.4E-14 107.9 16.7 152 313-496 57-208 (208)
408 TIGR01291 nodJ ABC-2 type tran 99.2 8.8E-09 1.9E-13 103.5 24.5 233 226-493 7-249 (253)
409 PF00005 ABC_tran: ABC transpo 99.1 8.5E-11 1.8E-15 106.2 7.1 57 6-63 81-137 (137)
410 KOG0927 Predicted transporter 99.1 8.7E-11 1.9E-15 124.9 7.8 109 5-121 484-593 (614)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.1 6.2E-11 1.3E-15 116.7 6.0 83 32-118 87-175 (222)
412 TIGR00025 Mtu_efflux ABC trans 99.1 1.7E-08 3.8E-13 99.8 23.0 220 238-490 2-227 (232)
413 COG0178 UvrA Excinuclease ATPa 99.1 8E-10 1.7E-14 122.4 13.4 90 33-124 480-577 (935)
414 TIGR03861 phenyl_ABC_PedC alco 99.1 4.8E-08 1.1E-12 97.9 25.3 208 224-433 2-219 (253)
415 PRK03918 chromosome segregatio 99.1 2.9E-10 6.3E-15 133.4 9.9 78 31-110 785-868 (880)
416 PRK10246 exonuclease subunit S 99.1 5.6E-10 1.2E-14 132.5 11.2 80 30-110 945-1032(1047)
417 cd03242 ABC_RecF RecF is a rec 99.0 1E-09 2.2E-14 111.3 8.7 77 32-113 181-269 (270)
418 PRK01156 chromosome segregatio 99.0 3.1E-09 6.7E-14 125.0 13.5 77 31-109 798-883 (895)
419 PRK15066 inner membrane transp 99.0 2.1E-07 4.6E-12 93.6 24.1 242 223-498 7-256 (257)
420 KOG0066 eIF2-interacting prote 98.9 2.2E-09 4.8E-14 111.3 8.0 93 9-109 683-775 (807)
421 KOG2355 Predicted ABC-type tra 98.9 2.9E-09 6.3E-14 101.0 7.8 110 8-125 128-238 (291)
422 TIGR00606 rad50 rad50. This fa 98.9 2.3E-09 4.9E-14 130.3 8.9 69 33-102 1198-1277(1311)
423 COG4615 PvdE ABC-type sideroph 98.9 2.1E-09 4.6E-14 110.6 6.8 109 7-117 421-530 (546)
424 TIGR02168 SMC_prok_B chromosom 98.8 3.9E-09 8.4E-14 127.0 7.9 76 31-109 1086-1165(1179)
425 cd03243 ABC_MutS_homologs The 98.8 8.3E-09 1.8E-13 100.0 8.1 86 33-121 90-176 (202)
426 PRK00064 recF recombination pr 98.8 9.8E-09 2.1E-13 108.4 9.0 79 31-113 270-359 (361)
427 KOG0066 eIF2-interacting prote 98.8 2E-09 4.4E-14 111.6 1.8 105 7-120 389-495 (807)
428 PRK02224 chromosome segregatio 98.8 1.7E-08 3.6E-13 118.6 9.5 78 32-111 779-869 (880)
429 smart00534 MUTSac ATPase domai 98.8 5.9E-09 1.3E-13 99.8 4.4 81 33-116 60-142 (185)
430 TIGR02169 SMC_prok_A chromosom 98.8 1.3E-08 2.9E-13 122.5 8.6 77 31-110 1071-1151(1164)
431 KOG0060 Long-chain acyl-CoA tr 98.7 5E-08 1.1E-12 105.0 9.2 102 7-113 537-645 (659)
432 PF02463 SMC_N: RecF/RecN/SMC 98.6 2.8E-07 6E-12 90.3 11.3 88 8-109 121-212 (220)
433 COG2401 ABC-type ATPase fused 98.6 1.6E-07 3.5E-12 97.5 8.6 100 10-113 486-587 (593)
434 TIGR00611 recf recF protein. A 98.5 1.2E-07 2.6E-12 100.2 7.3 59 33-94 274-341 (365)
435 KOG0063 RNAse L inhibitor, ABC 98.5 1.3E-07 2.8E-12 98.4 7.1 99 6-110 190-288 (592)
436 PRK14079 recF recombination pr 98.5 1.9E-07 4.2E-12 98.1 8.2 74 33-114 262-344 (349)
437 COG0419 SbcC ATPase involved i 98.5 2.8E-07 6.1E-12 108.5 10.0 87 23-111 802-898 (908)
438 COG0842 ABC-type multidrug tra 98.5 1.8E-05 3.8E-10 79.1 20.6 166 302-496 118-284 (286)
439 cd03282 ABC_MSH4_euk MutS4 hom 98.4 4.3E-07 9.3E-12 88.3 7.4 67 33-102 90-157 (204)
440 cd03283 ABC_MutS-like MutS-lik 98.4 1.2E-06 2.5E-11 85.0 10.0 71 37-108 88-163 (199)
441 cd01124 KaiC KaiC is a circadi 98.4 7.4E-07 1.6E-11 84.6 7.9 80 30-109 67-163 (187)
442 PF13304 AAA_21: AAA domain; P 98.3 1.6E-06 3.4E-11 84.5 8.6 63 32-94 234-299 (303)
443 KOG0064 Peroxisomal long-chain 98.3 4.5E-07 9.8E-12 96.6 4.2 85 8-95 582-670 (728)
444 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.6E-11 106.6 7.3 60 32-94 1245-1316(1353)
445 cd03284 ABC_MutS1 MutS1 homolo 98.3 1.4E-06 3.1E-11 85.4 6.4 86 33-122 84-179 (216)
446 PRK00409 recombination and DNA 98.2 1.5E-06 3.2E-11 100.2 6.9 82 32-116 388-470 (782)
447 KOG0063 RNAse L inhibitor, ABC 98.2 1.5E-06 3.1E-11 90.8 5.5 95 8-108 435-530 (592)
448 PF13558 SbcCD_C: Putative exo 98.1 4.9E-06 1.1E-10 70.1 6.5 49 31-79 29-90 (90)
449 cd03281 ABC_MSH5_euk MutS5 hom 98.1 5.3E-06 1.1E-10 81.3 7.0 61 34-94 88-154 (213)
450 TIGR01248 drrC daunorubicin re 98.1 4.8E-05 1E-09 70.5 12.6 128 300-432 17-146 (152)
451 TIGR03518 ABC_perm_GldF glidin 98.1 0.00078 1.7E-08 67.2 22.2 189 227-427 2-206 (240)
452 PF06422 PDR_CDR: CDR ABC tran 98.1 5.6E-06 1.2E-10 71.6 5.3 65 446-511 26-90 (103)
453 PRK13695 putative NTPase; Prov 98.0 1.1E-05 2.4E-10 76.1 6.9 80 33-116 77-156 (174)
454 TIGR01069 mutS2 MutS2 family p 98.0 1.2E-05 2.6E-10 92.6 7.2 63 31-94 382-445 (771)
455 PTZ00132 GTP-binding nuclear p 97.9 1.8E-05 3.9E-10 77.2 5.4 45 38-82 156-205 (215)
456 PF12679 ABC2_membrane_2: ABC- 97.8 0.0067 1.4E-07 60.9 22.7 95 302-396 88-199 (277)
457 PRK13830 conjugal transfer pro 97.8 4.4E-05 9.6E-10 88.9 7.5 69 50-119 650-728 (818)
458 TIGR02858 spore_III_AA stage I 97.7 8.6E-05 1.9E-09 75.3 7.7 68 45-121 187-266 (270)
459 COG1682 TagG ABC-type polysacc 97.6 0.025 5.4E-07 57.2 24.2 199 223-435 17-223 (263)
460 cd01125 repA Hexameric Replica 97.6 0.00014 3E-09 72.4 7.4 85 2-94 52-159 (239)
461 cd03286 ABC_MSH6_euk MutS6 hom 97.5 0.00025 5.4E-09 69.7 7.3 57 38-94 95-153 (218)
462 PRK08533 flagellar accessory p 97.5 0.00029 6.3E-09 69.9 7.5 75 35-109 96-184 (230)
463 cd01128 rho_factor Transcripti 97.5 5E-05 1.1E-09 76.1 1.9 77 31-113 126-211 (249)
464 PRK06067 flagellar accessory p 97.4 0.00081 1.8E-08 66.5 9.3 76 35-110 101-187 (234)
465 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00058 1.3E-08 67.3 7.5 63 38-102 96-160 (222)
466 cd01120 RecA-like_NTPases RecA 97.2 0.001 2.2E-08 60.6 7.5 63 35-97 68-140 (165)
467 PRK13891 conjugal transfer pro 97.1 0.001 2.2E-08 78.1 7.3 69 45-114 680-751 (852)
468 PF13175 AAA_15: AAA ATPase do 97.0 0.0015 3.2E-08 69.6 7.6 64 31-94 338-412 (415)
469 PF12698 ABC2_membrane_3: ABC- 97.0 0.00017 3.8E-09 73.6 0.0 157 297-488 182-343 (344)
470 COG3910 Predicted ATPase [Gene 96.9 0.0018 3.9E-08 61.4 5.8 67 27-94 122-188 (233)
471 COG1277 NosY ABC-type transpor 96.9 0.35 7.7E-06 48.7 22.9 247 225-494 3-275 (278)
472 PRK15176 Vi polysaccharide exp 96.9 0.44 9.5E-06 48.3 23.3 100 364-495 158-260 (264)
473 PF03379 CcmB: CcmB protein; 96.7 0.12 2.5E-06 50.8 17.5 153 226-392 1-162 (215)
474 COG0497 RecN ATPase involved i 96.4 0.011 2.5E-07 64.9 9.0 75 33-110 430-508 (557)
475 PF08370 PDR_assoc: Plant PDR 96.3 0.0062 1.3E-07 47.9 4.5 46 449-495 9-55 (65)
476 COG4637 Predicted ATPase [Gene 96.3 0.015 3.2E-07 59.4 8.1 67 33-102 269-337 (373)
477 KOG0964 Structural maintenance 96.2 0.0028 6.2E-08 72.0 2.9 74 32-108 1095-1172(1200)
478 TIGR03185 DNA_S_dndD DNA sulfu 96.2 0.0095 2.1E-07 68.0 6.9 58 32-93 549-613 (650)
479 COG1196 Smc Chromosome segrega 96.1 0.0075 1.6E-07 73.3 6.3 74 32-108 1064-1141(1163)
480 TIGR02655 circ_KaiC circadian 96.0 0.00099 2.1E-08 73.3 -2.0 67 33-109 114-190 (484)
481 PRK13873 conjugal transfer ATP 95.9 0.014 3.1E-07 68.2 7.1 46 50-95 633-679 (811)
482 PRK07721 fliI flagellum-specif 95.8 0.026 5.5E-07 61.2 7.8 85 34-121 223-340 (438)
483 PF13166 AAA_13: AAA domain 95.7 0.033 7.1E-07 64.3 8.9 64 31-94 497-571 (712)
484 TIGR02788 VirB11 P-type DNA tr 95.7 0.011 2.3E-07 61.3 4.2 71 44-123 210-280 (308)
485 PRK05399 DNA mismatch repair p 95.5 0.041 8.8E-07 64.7 8.5 80 21-104 651-738 (854)
486 KOG0962 DNA repair protein RAD 95.2 0.027 5.9E-07 66.8 5.7 59 35-93 1184-1253(1294)
487 COG4587 ABC-type uncharacteriz 95.0 3.6 7.9E-05 40.9 18.8 243 221-492 3-257 (268)
488 PRK14088 dnaA chromosomal repl 94.9 0.059 1.3E-06 58.6 7.0 71 51-121 193-265 (440)
489 PRK13898 type IV secretion sys 94.7 0.059 1.3E-06 63.1 6.8 50 49-99 639-689 (800)
490 TIGR00152 dephospho-CoA kinase 94.4 0.023 4.9E-07 54.3 2.1 73 37-111 60-133 (188)
491 PF12730 ABC2_membrane_4: ABC- 94.3 4.8 0.0001 37.9 18.2 88 302-390 68-171 (232)
492 cd01131 PilT Pilus retraction 93.9 0.067 1.5E-06 51.6 4.3 57 44-109 66-122 (198)
493 PRK06793 fliI flagellum-specif 93.9 0.049 1.1E-06 58.8 3.6 80 32-118 219-305 (432)
494 TIGR01190 ccmB heme exporter p 93.7 4.6 0.0001 39.5 16.6 136 230-380 2-147 (211)
495 COG1195 RecF Recombinational D 93.3 0.2 4.3E-06 52.8 6.8 75 34-113 275-361 (363)
496 PRK08699 DNA polymerase III su 93.2 0.08 1.7E-06 55.3 3.8 42 56-99 116-157 (325)
497 KOG0996 Structural maintenance 93.2 0.086 1.9E-06 61.6 4.2 75 32-109 1193-1271(1293)
498 PF12051 DUF3533: Protein of u 93.1 3.6 7.7E-05 44.0 16.3 137 314-483 240-380 (382)
499 COG4694 Uncharacterized protei 92.7 0.29 6.2E-06 53.4 7.0 71 34-105 529-607 (758)
500 KOG0933 Structural maintenance 92.7 0.083 1.8E-06 60.8 3.1 72 32-106 1080-1155(1174)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-87 Score=743.31 Aligned_cols=472 Identities=39% Similarity=0.643 Sum_probs=409.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++++++|++++++|||++|+||+||+...||+||||||||+||.+|++||+||||||||||||+.++.++++.||++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l 216 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL 216 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence 46789999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG 160 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~ 160 (546)
|++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|+|||++.||+||++++++.+ +.....
T Consensus 217 A~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~--- 292 (613)
T KOG0061|consen 217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTREL--- 292 (613)
T ss_pred HhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchhH---
Confidence 9999999999999999999999999999999999999999999999999999999999999999998853 111000
Q ss_pred cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHH-hhhhccCccccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 009019 161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVE-GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSR 239 (546)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R 239 (546)
...+......+.++..+...+...... ...+ ....+ ....++|+.|++.|++|.+++++|
T Consensus 293 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~s~~~q~~~L~~R~~~~~~R 353 (613)
T KOG0061|consen 293 ----------------EEAVRIAKLINKFSQTDNLKKTLEALEKSLST--SKKVE-IGTSPSWWTQFKILLKRSLKNIRR 353 (613)
T ss_pred ----------------HhHHHHHHHhhhccccchhhhhHHHHhhhccc--ccccc-cccCCcHHHHHHHHHHHHhHHHhh
Confidence 001111112222221000000000000 0100 00110 112789999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHhhCCCcchHHH
Q 009019 240 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGVTAF 318 (546)
Q Consensus 240 d~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~-~~p~~~~er~vf~RE~~~g~Y~~~~y 318 (546)
||.+.+.|+++.+++|+++|++||+++++..++++|.+++|+...++.|.++. +++.|+.||++|.||+.+|+|+.++|
T Consensus 354 ~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y 433 (613)
T KOG0061|consen 354 DPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSY 433 (613)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999888765 69999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 009019 319 VIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFML 398 (546)
Q Consensus 319 ~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l 398 (546)
++|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++++++++++||..+|+++++++.+.|++
T Consensus 434 ~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l 513 (613)
T KOG0061|consen 434 YLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLL 513 (613)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--CCCCcCHHHHHhhhcCcccccchhHHHHHH
Q 009019 399 VSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP--DLPKIPGEYVLENVFQIDVRRSKWIDLSVI 476 (546)
Q Consensus 399 ~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~--~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL 476 (546)
|+|||++.++||++ |+ |++|+||++|++||+++|||.+....|... ..+..+|++++.+ .+++. .+.|.|+.++
T Consensus 514 ~~G~fi~~~~ip~~-~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l 589 (613)
T KOG0061|consen 514 FGGFFINFDSIPKY-FR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVL 589 (613)
T ss_pred HhhhhcCcccccHH-HH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHH
Confidence 99999999999973 43 599999999999999999998733344332 3477899999998 88864 4699999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 009019 477 FSMIISYRIIFFVMIKISEDVTP 499 (546)
Q Consensus 477 ~~~~~~f~~l~~~~l~~~~~~~~ 499 (546)
++++++||+++|++|+++.+.++
T Consensus 590 ~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 590 LAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999877653
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.5e-83 Score=715.73 Aligned_cols=472 Identities=30% Similarity=0.516 Sum_probs=413.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++++++++++++.+||.+++||.+|+. ..++||||||||++||++|+++|++++|||||+|||+.++.++++.|+++
T Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH
Confidence 45677889999999999999999999975 36899999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG 160 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~ 160 (546)
+++|+|||+++|||+++++++||++++|++|+++|+|+++++.+||++.|++||+..||+|++++.++.+.+.
T Consensus 213 ~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~------- 285 (617)
T TIGR00955 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS------- 285 (617)
T ss_pred HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------
Confidence 9889999999999988999999999999999999999999999999999999999999999999887654211
Q ss_pred cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhccCc------cccCCCCCCCHHHHHHHHHHHHH
Q 009019 161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT------VLDAGGSQASFLMQAFTLTKRSF 234 (546)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~Q~~~L~~R~~ 234 (546)
+....+..+.+.+.|++++...+..+........++. .....++.++|+.|+.+|++|++
T Consensus 286 --------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~ 351 (617)
T TIGR00955 286 --------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSW 351 (617)
T ss_pred --------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 0001233445666777665544433332211111000 01123457899999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHHHHHHhhCCCc
Q 009019 235 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHY 313 (546)
Q Consensus 235 ~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~vf~RE~~~g~Y 313 (546)
++++|||.+++.|+++.+++|+++|++|++++++++++++|.|++|+++.+++|.++ ..++.|+.||++|+||+.+|+|
T Consensus 352 ~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y 431 (617)
T TIGR00955 352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLY 431 (617)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999999999999999999999999999999999999988888764 6689999999999999999999
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 009019 314 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQ 393 (546)
Q Consensus 314 ~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~ 393 (546)
++++|++|++++++|+.++.+++|.+|+|||+|+++++.+|++|++++++..++++++++++++++|+..+|+.+++++.
T Consensus 432 ~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 511 (617)
T TIGR00955 432 RVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFV 511 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcc-cCCCC---CCCCcCHHHHHhhhcCcccccch
Q 009019 394 GIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF-DNQSP---DLPKIPGEYVLENVFQIDVRRSK 469 (546)
Q Consensus 394 ~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f-~~~~~---~~~~~~G~~vL~~~~~~~~~~~~ 469 (546)
.++++|+||++++++||+ +|+| ++|+||++||+++++.|||.|..+ +|... +.|..+|+++|+. ||++.+ +.
T Consensus 512 ~~~~lf~G~~i~~~~ip~-~~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~-~~ 587 (617)
T TIGR00955 512 IPFLLFGGFFINSDSIPV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNA-DL 587 (617)
T ss_pred HHHHHHhhcccChhhccH-HHHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCcc-cH
Confidence 999999999999999997 5776 999999999999999999999876 44321 2266789999997 999754 58
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009019 470 WIDLSVIFSMIISYRIIFFVMIKISEDVT 498 (546)
Q Consensus 470 w~~~~iL~~~~~~f~~l~~~~l~~~~~~~ 498 (546)
|.|+++|+++.++|++++|++|+++.+.+
T Consensus 588 ~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 588 YLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999876543
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.9e-82 Score=705.27 Aligned_cols=461 Identities=27% Similarity=0.441 Sum_probs=385.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++++++.+||++++||.+|+...++||||||||++||++|+++|+||+|||||+|||+.++.++++.|+++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~ 254 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999988999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhccc
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSM 162 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~~ 162 (546)
+|+|||+++|||+++++++||++++|++|+++|+|+++++.+||++.|++||.+.||+||+++.++.+.... +.
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~- 328 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV- 328 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-
Confidence 899999999999778999999999999999999999999999999999999999999999999876542100 00
Q ss_pred cccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHh--hhh---c-----cCccc--cCCCCCCCHHHHHHHHH
Q 009019 163 KLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEG--ISK---V-----KGTVL--DAGGSQASFLMQAFTLT 230 (546)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~Q~~~L~ 230 (546)
. +.......+.+.+.|++... ....+.... ... . ..... ......++|++|+.+|+
T Consensus 329 ~-----------~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~ 396 (659)
T PLN03211 329 S-----------EREKPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILL 396 (659)
T ss_pred c-----------ccccchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHH
Confidence 0 00001112234445543211 111011000 000 0 00000 01124578999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHH-hhhhhhHHhhhHHHHHHhh
Q 009019 231 KRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPSFVEDMKVFQRERL 309 (546)
Q Consensus 231 ~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~-~~~~p~~~~er~vf~RE~~ 309 (546)
+|++++ +||+.+.+.|+++++++|+++|++||+++ ..++++|.|++||++.++.+.+ +..++.|+.||+||+||+.
T Consensus 397 ~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~ 473 (659)
T PLN03211 397 QRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERA 473 (659)
T ss_pred HHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 999998 89999999999999999999999999985 6789999999999988877654 5789999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 009019 310 NGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG 389 (546)
Q Consensus 310 ~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~ 389 (546)
+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++++++|+..+|+.++
T Consensus 474 ~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~ 553 (659)
T PLN03211 474 SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV 553 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc-----ccCCCC-----CCCCcCHHHHHhh
Q 009019 390 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSP-----DLPKIPGEYVLEN 459 (546)
Q Consensus 390 ~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~-----f~~~~~-----~~~~~~G~~vL~~ 459 (546)
+++++++++|+||+++ +||+ +|+| ++|+||++||+|+++.|||.+.+ ++|..+ +.|...++.++.
T Consensus 554 ~~~~~~~~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~- 628 (659)
T PLN03211 554 TVTMLAFVLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG- 628 (659)
T ss_pred HHHHHHHHHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-
Confidence 9999999999999996 7997 5776 99999999999999999997653 245322 113334433332
Q ss_pred hcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009019 460 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE 495 (546)
Q Consensus 460 ~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~ 495 (546)
+.+.|.|+++|++++++||+++|++|++.+
T Consensus 629 ------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 629 ------QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 235899999999999999999999998643
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.5e-82 Score=753.54 Aligned_cols=477 Identities=21% Similarity=0.382 Sum_probs=414.3
Q ss_pred HHHHHH-HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTL-VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++++++ ++++++.+||++++||++|+..+++|||||||||+||++|+++|+|++|||||+|||+.++.++++.|+++++
T Consensus 178 ~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 178 EEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred HHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 343334 5778999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhcc
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGS 161 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~ 161 (546)
.|+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+++.++.+..... .+
T Consensus 258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~---~~- 333 (1394)
T TIGR00956 258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIK---PG- 333 (1394)
T ss_pred hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcc---cc-
Confidence 4999999999998999999999999999999999999999999999999999999999999987654311100 00
Q ss_pred ccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhh------------------ccCccccCCCCCCCHH
Q 009019 162 MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISK------------------VKGTVLDAGGSQASFL 223 (546)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~s~~ 223 (546)
.+ ...| ...+.+++.|++|+..+...+.++...+ ..........+..|++
T Consensus 334 ----~e-~~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 401 (1394)
T TIGR00956 334 ----YE-KKVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFS 401 (1394)
T ss_pred ----cc-ccCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHH
Confidence 00 0001 1123466777777655444333321100 0000111235678999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHH
Q 009019 224 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 303 (546)
Q Consensus 224 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~v 303 (546)
+|+++|++|++++++|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+.+|+++..++.++.||+|
T Consensus 402 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i 481 (1394)
T TIGR00956 402 MQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPI 481 (1394)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 009019 304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 383 (546)
Q Consensus 304 f~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~ 383 (546)
|+||+.+|+|++++|++|++++++|+.++.+++|++|+|||+||++++.+|++|+++++++.+++.++++++++++||..
T Consensus 482 ~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~ 561 (1394)
T TIGR00956 482 VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLS 561 (1394)
T ss_pred eeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC--C---------------
Q 009019 384 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P--------------- 446 (546)
Q Consensus 384 ~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~--~--------------- 446 (546)
+|+.+++++++++++|+||++++++||+ ||+| ++|+||++||+||++.|||.|.+++|.. |
T Consensus 562 ~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C 639 (1394)
T TIGR00956 562 EAMTPAAILLLALSIYTGFAIPRPSMLG-WSKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVC 639 (1394)
T ss_pred HHHHHHHHHHHHHHHHcccccChhhccH-HHHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccc
Confidence 9999999999999999999999999997 5666 9999999999999999999999887741 1
Q ss_pred -------CCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009019 447 -------DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 499 (546)
Q Consensus 447 -------~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~ 499 (546)
|.++++|+++|+..|+++.+ +.|.|+++|++++++|++++++++++.+....
T Consensus 640 ~~~g~~~g~~~~~G~~~L~~~~~~~~~-~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~ 698 (1394)
T TIGR00956 640 TVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQ 698 (1394)
T ss_pred cCCCCcCCcccccHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 12356999999966888754 59999999999999999999999998764443
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.8e-79 Score=730.40 Aligned_cols=467 Identities=25% Similarity=0.379 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++++++.+||++++|+.+|+..+++|||||||||+||++|+++|+||||||||+|||+.++..+++.|+++++
T Consensus 988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140 988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEecCh----hHHHHHHHHc-CCC-CCCCCCChhHHHHHhhcChhhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFGET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVK 155 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~~v~~G~~----~~~~~~f~~~-g~~-~p~~~~p~d~~l~~~~~~~~~~~ 155 (546)
+|+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++ |.+ ||+..||+||+++.++.+.+.
T Consensus 1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-- 1145 (1470)
T PLN03140 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-- 1145 (1470)
T ss_pred CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--
Confidence 9999999999998789999999999995 899999996 5789999997 675 999999999999876542100
Q ss_pred HhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhcc-Cc--cccCCCCCCCHHHHHHHHHHH
Q 009019 156 ATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK-GT--VLDAGGSQASFLMQAFTLTKR 232 (546)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~s~~~Q~~~L~~R 232 (546)
+....+.+.|++|+.++...+.+++..... +. .....++.+++++|+.+|++|
T Consensus 1146 ------------------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 1201 (1470)
T PLN03140 1146 ------------------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWK 1201 (1470)
T ss_pred ------------------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHH
Confidence 001236678888877665554443332111 11 111245788999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHHHHHHh
Q 009019 233 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRER 308 (546)
Q Consensus 233 ~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~---~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~vf~RE~ 308 (546)
+++++||||.+++.|+++.+++|+++|++||+++++. .+++++.|++|+++.+..+... ..+|.|..||+||+||+
T Consensus 1202 ~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr 1281 (1470)
T PLN03140 1202 QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRER 1281 (1470)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 4677889999998888777554 56799999999999999
Q ss_pred hCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 009019 309 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT 388 (546)
Q Consensus 309 ~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~ 388 (546)
.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..|++|+++++++.++++++|+++++++||..+|.++
T Consensus 1282 ~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~ 1361 (1470)
T PLN03140 1282 AAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIF 1361 (1470)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC-CCcCHHHHHhhhcCccccc
Q 009019 389 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRR 467 (546)
Q Consensus 389 ~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~-~~~~G~~vL~~~~~~~~~~ 467 (546)
++++++++++|+||++++++||+ +|+| ++|+||++|+++|++.|||.|.+++|..++. +..+|++++.++||++.+
T Consensus 1362 ~~~~~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 1438 (1470)
T PLN03140 1362 AAAFYGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPD- 1438 (1470)
T ss_pred HHHHHHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcc-
Confidence 99999999999999999999997 6886 9999999999999999999998887665542 235788887777999754
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009019 468 SKWIDLSVIFSMIISYRIIFFVMIKISEDVT 498 (546)
Q Consensus 468 ~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~ 498 (546)
..|.+++++++++++|++++++++++.+..+
T Consensus 1439 ~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1439 FMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 5899999999999999999999999876543
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.1e-79 Score=727.49 Aligned_cols=470 Identities=20% Similarity=0.359 Sum_probs=407.7
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009019 9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV 87 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv 87 (546)
.++++++.+||++|+||.+|+..+++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++ .|+|+
T Consensus 311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv 390 (1470)
T PLN03140 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390 (1470)
T ss_pred HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhcccccccc
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFE 167 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 167 (546)
|+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||+++.++.+.... . +.
T Consensus 391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-~---------~~ 460 (1470)
T PLN03140 391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-Y---------WA 460 (1470)
T ss_pred EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-h---------hh
Confidence 9999999899999999999999999999999999999999999999999999999988766431100 0 00
Q ss_pred CCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhc---cCccccCCCCCCCHHHHHHHHHHHHHHHhhcchhHH
Q 009019 168 TSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYY 244 (546)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~ 244 (546)
....|....+ .+.+.+.|++|.......+.++..... ........++..+++.|++.+++|.+++++||+..+
T Consensus 461 ~~~~p~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~ 536 (1470)
T PLN03140 461 DRNKPYRYIS----VSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVY 536 (1470)
T ss_pred ccCCccccCC----HHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 0111111111 235778888887665554443321111 111112345778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCh---hhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHHHHhhCCCcchHHHHHH
Q 009019 245 WLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIG 321 (546)
Q Consensus 245 ~~r~~~~i~~~l~iG~lf~~l~~~~---~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~RE~~~g~Y~~~~y~la 321 (546)
..|+++.+++|+++|++||+++.++ .+.+.+.|++||.+.+.+|.+++.++.++.||+||+|||.+++|++++|++|
T Consensus 537 ~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la 616 (1470)
T PLN03140 537 VFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLP 616 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHH
Confidence 9999999999999999999997543 3456678888888888888888889999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Q 009019 322 NTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG 401 (546)
Q Consensus 322 ~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~G 401 (546)
++++++|+.++.+++|++|+|||+||++++++|++|+++++++.+++.++++++++++|+..+|+.+++++++++++|+|
T Consensus 617 ~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~G 696 (1470)
T PLN03140 617 TFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGG 696 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC-CCCCCcCHHHHHhhhcCcccc-cchhHHHHHHHHH
Q 009019 402 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS-PDLPKIPGEYVLENVFQIDVR-RSKWIDLSVIFSM 479 (546)
Q Consensus 402 f~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~-~~~~~~~G~~vL~~~~~~~~~-~~~w~~~~iL~~~ 479 (546)
|++++++||+ ||+| ++|+||++||++|++.|||.+..+.+.. .+.+..+|+++|+. +|++.+ .+.|.|+++|+++
T Consensus 697 f~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~ 773 (1470)
T PLN03140 697 FILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGF 773 (1470)
T ss_pred ceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHH
Confidence 9999999997 5776 9999999999999999999887764321 23356899999976 899643 4689999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009019 480 IISYRIIFFVMIKISE 495 (546)
Q Consensus 480 ~~~f~~l~~~~l~~~~ 495 (546)
+++|+++++++|++.+
T Consensus 774 ~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 774 TILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999866
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.3e-77 Score=712.69 Aligned_cols=463 Identities=24% Similarity=0.361 Sum_probs=400.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~-il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++++++++++++.+||++++|+.+|+. .++|||||||||+||++|+.+|+ ||||||||+|||+.++.++++.|+++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 34567788999999999999999999863 34899999999999999999997 99999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEecCh----hHHHHHHHHcCC-CCCCCCCChhHHHHHhhcChhhH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAAFEFFAQAGF-PCPALRNPSDHFLRCINSDFDKV 154 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G-~~v~~G~~----~~~~~~f~~~g~-~~p~~~~p~d~~l~~~~~~~~~~ 154 (546)
+++|+|||+++|||+..+++.||++++|++| +++|+|++ +++.+||+..|+ +||+..||+||+++.++.+...
T Consensus 949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~- 1027 (1394)
T TIGR00956 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA- 1027 (1394)
T ss_pred HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-
Confidence 9899999999999987788999999999987 99999997 568899999996 9999999999999987653110
Q ss_pred HHhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhc-c---Cc--cccCCCCCCCHHHHHHH
Q 009019 155 KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV-K---GT--VLDAGGSQASFLMQAFT 228 (546)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~---~~--~~~~~~~~~s~~~Q~~~ 228 (546)
+..+.+.+.|+.|.......+.++..... . .. .....++.+++++|+++
T Consensus 1028 -------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 1082 (1394)
T TIGR00956 1028 -------------------------HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082 (1394)
T ss_pred -------------------------chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHH
Confidence 00123556677666555544433322111 0 00 01123578899999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHH-HHH
Q 009019 229 LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRE 307 (546)
Q Consensus 229 L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf-~RE 307 (546)
|++|+++++||||.+++.|+++.+++|+++|++|+++++++.++++|.+++|+++.+..++....+|.|+.||.+| +||
T Consensus 1083 l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE 1162 (1394)
T TIGR00956 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRE 1162 (1394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877777667889999999885 999
Q ss_pred hhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009019 308 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH-------YLFFVLCLYASVAVVESLMMAIASIVP 380 (546)
Q Consensus 308 ~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~-------f~~f~l~l~l~~~~~~sl~~~i~~~~p 380 (546)
+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|
T Consensus 1163 ~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~ 1242 (1394)
T TIGR00956 1163 RPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNP 1242 (1394)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999988765 999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--------------
Q 009019 381 NFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP-------------- 446 (546)
Q Consensus 381 ~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~-------------- 446 (546)
+..+|+.+++.+++++++|+||++++++||+ +|+| ++|+||++|+++|++.|||.|.++.|...
T Consensus 1243 ~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1243 NADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 9999999999999999999999999999997 6886 99999999999999999999988765421
Q ss_pred -----------------C---CC----CcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009019 447 -----------------D---LP----KIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 496 (546)
Q Consensus 447 -----------------~---~~----~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~ 496 (546)
+ .| +.+|+++|+. ++++.+ ..|+|+++++++++++ +++++++++..|
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-ccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 0 12 4599999997 888754 5899999999999999 777788877644
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-73 Score=646.70 Aligned_cols=490 Identities=23% Similarity=0.416 Sum_probs=424.3
Q ss_pred HHHHHH-HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.++.. .+|.+++.+||++|+||+|||...||+||||||||+||.+++.+|+++++||+|+|||+.++.++++.||+++
T Consensus 228 R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a 307 (1391)
T KOG0065|consen 228 RREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLA 307 (1391)
T ss_pred HHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHH
Confidence 344333 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG 160 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~ 160 (546)
+ .+.|.++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++|++.+..+.. ++
T Consensus 308 ~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~------- 379 (1391)
T KOG0065|consen 308 HITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK-DQ------- 379 (1391)
T ss_pred hhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc-cc-------
Confidence 8 68999999999999999999999999999999999999999999999999999999999887766521 11
Q ss_pred cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhcc---CccccCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK---GTVLDAGGSQASFLMQAFTLTKRSFVNM 237 (546)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~Q~~~L~~R~~~~~ 237 (546)
...+...+.+....+. .++.+.|++++........++...++. ......+++..+.|.|++.+++|.|..+
T Consensus 380 --~~~~~~~~~~~~~~~~----~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~ 453 (1391)
T KOG0065|consen 380 --EQYWNKRSKPYPYTSV----SEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLM 453 (1391)
T ss_pred --cccccccCCCcccCCH----HHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHH
Confidence 1112222223222222 347788888888877766655432221 1222356778899999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHhccCC-CChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHHHHhhCCCcchH
Q 009019 238 SRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVT 316 (546)
Q Consensus 238 ~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~-~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~RE~~~g~Y~~~ 316 (546)
.||..++..++++.+++|+++|++|++.+ .+..+...|.|++||.+.+.+|++++.++...+.|+||+|+|...+|+++
T Consensus 454 k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~ 533 (1391)
T KOG0065|consen 454 KRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPW 533 (1391)
T ss_pred hCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChH
Confidence 99999999999999999999999999999 66677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 009019 317 AFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIF 396 (546)
Q Consensus 317 ~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~ 396 (546)
+|.++.+++++|+.++.+++|.+|+||++||.+++++||.+++.++++..++.++++++++++++...|+.+|++.+.+.
T Consensus 534 A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i 613 (1391)
T KOG0065|consen 534 AEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVL 613 (1391)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCC------------C---------CCCCCcCHHH
Q 009019 397 MLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQ------------S---------PDLPKIPGEY 455 (546)
Q Consensus 397 ~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~------------~---------~~~~~~~G~~ 455 (546)
.+++||+++.++||+ ||+| ++|+||..||+|+++.|||.|..++|. . +|..+..|++
T Consensus 614 ~m~~Gf~Ip~~~m~~-W~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~ 691 (1391)
T KOG0065|consen 614 FMYGGFVIPKKDMPP-WFRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRD 691 (1391)
T ss_pred HHHcceeeeccccch-HHHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccc
Confidence 999999999999997 5666 999999999999999999999988886 1 1224567777
Q ss_pred HHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhh
Q 009019 456 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRR 509 (546)
Q Consensus 456 vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~ 509 (546)
+++..|+++. ++.|+|+++++|+.++|.++..+++.|.+-.+-...-+..++.
T Consensus 692 ~l~~~~~y~~-~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~ 744 (1391)
T KOG0065|consen 692 YLKVQYQYEY-KWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKG 744 (1391)
T ss_pred cccccccccc-ceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccc
Confidence 7766677654 5699999999999999999999998886544433333344433
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-74 Score=647.25 Aligned_cols=469 Identities=25% Similarity=0.376 Sum_probs=404.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC-CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P-~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+||.+.||++++.++|++++|.+||... +|||.+||||++||.||+.+| .||||||||||||+.++..|++.+|+
T Consensus 897 v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrk 975 (1391)
T KOG0065|consen 897 VSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRK 975 (1391)
T ss_pred CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHH
Confidence 3577888999999999999999999999977 999999999999999999999 89999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecChhH----HHHHHHHcC-CCCCCCCCChhHHHHHhhcChhh
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----AFEFFAQAG-FPCPALRNPSDHFLRCINSDFDK 153 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~~G~~~~----~~~~f~~~g-~~~p~~~~p~d~~l~~~~~~~~~ 153 (546)
++..|+||+||+||||.++++.||++++|+ +|++||+||..+ +++||++.| .+||...||||++++++....+.
T Consensus 976 la~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~ 1055 (1391)
T KOG0065|consen 976 LADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA 1055 (1391)
T ss_pred HHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc
Confidence 999999999999999999999999999997 789999999755 567999976 89999999999999987653110
Q ss_pred HHHhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhccCc----cccCCCCCCCHHHHHHHH
Q 009019 154 VKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT----VLDAGGSQASFLMQAFTL 229 (546)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~Q~~~L 229 (546)
+...++.+.|++|+.++...+.++++...... ...+.++.+|++.|++.+
T Consensus 1056 --------------------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~ 1109 (1391)
T KOG0065|consen 1056 --------------------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLC 1109 (1391)
T ss_pred --------------------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHH
Confidence 01124678999999999988888776532211 122456789999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhh-hhHHhhhHHHHHHh
Q 009019 230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDMKVFQRER 308 (546)
Q Consensus 230 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~-p~~~~er~vf~RE~ 308 (546)
++|++..+||+|.|.++|++..++.||++|+.||++|++.++++|..+++|+.+.+..-...+.. |....||.+++||+
T Consensus 1110 l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~ 1189 (1391)
T KOG0065|consen 1110 LWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRER 1189 (1391)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999999988877665544434 55567889999999
Q ss_pred hCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 009019 309 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT 388 (546)
Q Consensus 309 ~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~ 388 (546)
.+|+|++.+|++|.+++|+|+.++.+.+|.+++|+++|+...+.+|++|++..++..+...++|+++.+++||..+|.++
T Consensus 1190 ~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~ 1269 (1391)
T KOG0065|consen 1190 ASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVI 1269 (1391)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC------CCcCHHHHHhhhcC
Q 009019 389 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL------PKIPGEYVLENVFQ 462 (546)
Q Consensus 389 ~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~------~~~~G~~vL~~~~~ 462 (546)
.+.++.++.+|+|++++++.||+ ||+| |||+||+.|.++|++..++.+.+-.|...+. +-.+..++++.++|
T Consensus 1270 ~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~ 1347 (1391)
T KOG0065|consen 1270 ASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFG 1347 (1391)
T ss_pred HHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhc
Confidence 99999999999999999999998 7986 9999999999999999999988777755431 12356677777788
Q ss_pred ----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009019 463 ----IDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP 499 (546)
Q Consensus 463 ----~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~ 499 (546)
+..+. .-..-.+..++.+++.+++.+.+++..+-+.
T Consensus 1348 ~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1348 EGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred cCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 43221 1122233344667777777777777655443
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=9.6e-27 Score=220.68 Aligned_cols=116 Identities=30% Similarity=0.435 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.++++.++|+.+||.+.+|. ++.+|||||||||+|||+|+.+|+++++|||||.|||....+|++.+++|
T Consensus 108 ~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 108 LSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 4788899999999999999999988 77889999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++.
T Consensus 183 A~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 183 AEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999995 789999999999999999999988864
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-26 Score=229.37 Aligned_cols=117 Identities=32% Similarity=0.451 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++++++|.++++.+||++.+|. ++.+|||||||||+|||||+.+|+||++|||||.|||.+...|+++|+++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 4789999999999999999999888 67789999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.+ .|.||+++||++ +-+.+.||||.+|++|+++..|+..++.
T Consensus 188 n~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 188 NRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 86 599999999995 7899999999999999999999988764
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=210.73 Aligned_cols=118 Identities=31% Similarity=0.432 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
|++.+.+++++++.+.|+|.++.|+++|+ +|.|+||||+|||+|+++|++++|||||||||..++..+.+.++++
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~ 179 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh
Confidence 45678899999999999999999999874 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.++|++||+++|. .+|+.++||++++|++|++|+.|+.++..+
T Consensus 180 k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 180 KNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999 589999999999999999999999987654
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4e-25 Score=217.98 Aligned_cols=118 Identities=33% Similarity=0.523 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++++++++.+||++.+++ .+..|||||||||+||.+|+.+|++|+|||||+|||+.++.++++.+++|
T Consensus 110 ~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 110 LPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred CCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999887 56789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.++ |.|+|++||+ ...+..++|++++|++|+++++|++.++.+
T Consensus 185 ~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 185 KEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 987 7999999999 589999999999999999999999876543
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=9.5e-25 Score=211.16 Aligned_cols=127 Identities=24% Similarity=0.443 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++++++++++++.+||+. .+++ ++++|||||+|||.+||||+.+|+||++|||++.|||.++.++.+.+++
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 57788999999999999974 5655 7899999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHh
Q 009019 80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI 147 (546)
Q Consensus 80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~ 147 (546)
+.+ -|+|||++||| ..|++++.|||++|++|+++..|+|++++. ||++.|+...
T Consensus 181 lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~-------------~Pan~FV~~f 235 (309)
T COG1125 181 LQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA-------------NPANDFVEDF 235 (309)
T ss_pred HHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh-------------CccHHHHHHH
Confidence 987 59999999999 589999999999999999999999998764 7887777654
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.1e-25 Score=216.38 Aligned_cols=112 Identities=30% Similarity=0.529 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++.|+++|+.+|+.+.+|+.||. |||||+|||-|||+|+++|++|+|||||+|+|+.++..++++|++++++|+
T Consensus 116 d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 116 DKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred HHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 378899999999999999998885 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
||++++||+ ..+.+.||+|++|++ +++++|+++++.+
T Consensus 191 tIl~vtHDL-~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 191 TVLMVTHDL-GLVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred EEEEEeCCc-HHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 999999995 789999999999965 5678999987653
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.1e-24 Score=222.76 Aligned_cols=118 Identities=39% Similarity=0.561 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||.+.+++++ ++||+|||||++||++|+++|++|||||||+||||.++.++.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 345678999999999998666644 579999999999999999999999999999999999999999999999998
Q ss_pred C-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009019 84 G-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127 (546)
Q Consensus 84 g-~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 127 (546)
| +||++|||++ +++..+||+|++|++|++++.|+++++...+.
T Consensus 186 g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 186 GGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred CCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 7 8999999996 78999999999999999999999988766543
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=9.9e-25 Score=215.92 Aligned_cols=113 Identities=38% Similarity=0.516 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.++.|++.|+.+|+.+.+++.+. .|||||||||.||++|+++|++|+||||||.||..++.++++.++++++ +
T Consensus 114 ~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258)
T COG1120 114 EDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258)
T ss_pred hHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999764 6999999999999999999999999999999999999999999999995 6
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|||+++||+ ..+.++||++++|++|+++.+|+++++.
T Consensus 189 ~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 189 GLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999996 6899999999999999999999998765
No 18
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.5e-24 Score=208.72 Aligned_cols=118 Identities=37% Similarity=0.524 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++..++.+..-|+..||... +|. ++.+|||||+||+++|||++.+|+|+|+||||+||||.++..+.+++++
T Consensus 116 lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~ 190 (263)
T COG1127 116 LPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRE 190 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHH
Confidence 4677888899999999999876 555 7789999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.+ -|.|++++|||. .+++..+|++++|.+|++++.|+++++.+
T Consensus 191 L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 191 LNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 987 599999999995 78999999999999999999999998754
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.7e-24 Score=204.26 Aligned_cols=114 Identities=30% Similarity=0.469 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.+.++-+.|+.+|+.+.+.++.+ .|||||+|||+|||+|+++|+|++.|||++.|||.++.+||+.|+++++ +
T Consensus 123 ~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 123 EDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence 445667788999999999998776 5999999999999999999999999999999999999999999999986 7
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.|||++.||. .-+.++|||++-|++|+++|+||++++.+
T Consensus 198 g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 198 GITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred CCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 99999999995 78999999999999999999999988654
No 20
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=210.11 Aligned_cols=118 Identities=29% Similarity=0.400 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++|.++++.++|+.+||.+.... -+.++.+|||||||||.||.+|+.+|+|||.||||++||...+.+|+++|+++.+
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~--~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERR--LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHH--HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 45667889999999999764322 2448999999999999999999999999999999999999999999999999997
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|.++|++|||. .-+.+++|||++|..|++|+.|+++++.
T Consensus 202 e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 202 EKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred hcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 799999999995 7899999999999999999999999764
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.9e-23 Score=216.39 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.++++.++++.+||++..|+. +..|||||||||+|||+|+++|++|+|||||+|||+.++..+++.|+++++
T Consensus 114 ~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~ 188 (343)
T TIGR02314 114 KDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 456677899999999999888874 457999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|||++||++ +.+.++||++++|++|+++..|+++++.
T Consensus 189 ~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 189 RLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 99999999995 7888999999999999999999988763
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=3.3e-23 Score=213.34 Aligned_cols=115 Identities=34% Similarity=0.537 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.++|.+.+++.++ +||||||||++||++|+++|++|+|||||+|||+.++.++.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 113 AAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 4455678899999999998888664 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ +++.++||+|++|++|++++.|+++++.+
T Consensus 188 g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 188 GKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999995 78999999999999999999999988754
No 23
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5e-23 Score=210.33 Aligned_cols=127 Identities=30% Similarity=0.487 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++.++++.++++.+||. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 117 KEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 455667889999999996 45665 456799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH---HHHHHcCCCCCC
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCPA 135 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~---~~f~~~g~~~p~ 135 (546)
++|.|||+++|++ .++.+++|+|++|++|++++.|++++.. +.+...|+.+|.
T Consensus 192 ~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 192 QSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 8899999999996 7788999999999999999999998864 344556766554
No 24
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=4.6e-23 Score=204.75 Aligned_cols=130 Identities=25% Similarity=0.381 Sum_probs=118.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++|+++++.+.|+..||++.+++ ++++|||||||||.+||+|+++|+||++|||+|.|||--+.++.+.|.+|
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 4789999999999999999999998 56789999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhc
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS 149 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~ 149 (546)
.+ .++|||++||| ..|.+++.|||.+|++|+++..|+|++++. ||++.|+...-.
T Consensus 211 q~~l~KTIvFitHD-LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~-------------~PAndYV~~Fv~ 266 (386)
T COG4175 211 QAKLKKTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL-------------NPANDYVRDFVR 266 (386)
T ss_pred HHHhCCeEEEEecC-HHHHHhccceEEEecCCeEEEeCCHHHHHc-------------CccHHHHHHHHh
Confidence 86 58999999999 589999999999999999999999998764 777777665443
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-23 Score=200.82 Aligned_cols=113 Identities=29% Similarity=0.455 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
.++++.++++.+||.. ..++ ++.+||||||||++|||||+.+|++|+||||||.||+..+.+|+++|.++.+ .
T Consensus 117 ~~~~i~~~L~~VgL~~~~l~R-----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 117 SQQRIAELLDQVGLPPSFLDR-----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred HHHHHHHHHHHcCCCHHHHhc-----CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 3445899999999974 5555 6788999999999999999999999999999999999999999999999997 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.|.|+++|| ..-+.++||||++|.+|+++..++++++.+
T Consensus 192 ~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 192 GLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred CceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 8899999999 588999999999999999999999998654
No 26
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.89 E-value=7.7e-23 Score=210.37 Aligned_cols=115 Identities=30% Similarity=0.477 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.+||.+..|+.+ +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 99 DEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred HHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 344567899999999998888865 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 174 g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 174 GVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999995 78999999999999999999999988654
No 27
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=5.7e-23 Score=199.63 Aligned_cols=102 Identities=34% Similarity=0.557 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCccccc-ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQDCAD-TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~-~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+++++++++++.+||.+..+ + ++.+|||||||||+|||||+.+|+|+++||||..||+.++..|+++|++++++
T Consensus 117 ~~~~~~~~l~~~lgl~~~~~~~-----~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 117 RRKRAAEELLEVLGLEDRLLKK-----KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred HHHHHHHHHHHhcCChhhhccC-----CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 56778899999999997666 4 56789999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
|+|||++||+| ++...+||++.|.+|++
T Consensus 192 ~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 192 RGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred cCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999996 68899999999999983
No 28
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=7.5e-23 Score=219.50 Aligned_cols=119 Identities=31% Similarity=0.436 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.++++.++++.+||.+.... +.++++|||||||||.||++|+.+|++|++||||++||+.++.+|++.|+++.
T Consensus 125 ~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~ 201 (539)
T COG1123 125 SRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ 201 (539)
T ss_pred cHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHH
Confidence 367788999999999999887665 55899999999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+ .|.++|++||++ .-+.+++|||++|.+|+++..|+++++.+
T Consensus 202 ~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 202 RELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 5 699999999996 78999999999999999999999998865
No 29
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.3e-22 Score=205.35 Aligned_cols=115 Identities=33% Similarity=0.503 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.+++++++++.+||. +..|+ .++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus 116 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 116 EEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 445667889999999997 56666 44679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+++ |+|||++||++ .++.+++|++++|++|++++.|+++++.
T Consensus 191 ~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 191 HKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 875 99999999995 7888999999999999999999998864
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-22 Score=213.23 Aligned_cols=116 Identities=27% Similarity=0.424 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ +.|||||||||+|||+|+.+|++|+|||||++||+.++.++.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999998888754 5799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus 182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 75 99999999995 7899999999999999999999998764
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-22 Score=201.36 Aligned_cols=113 Identities=33% Similarity=0.505 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 111 EEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999988777755 46999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|+|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 186 ~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 186 LGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred cCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 489999999996 678899999999999999999988764
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=1.4e-22 Score=211.34 Aligned_cols=115 Identities=32% Similarity=0.526 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.+||.+..++.++ +||||||||++||++|+++|++|+|||||+|||+.++.++.+.|++++++
T Consensus 147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3445677889999999998888765 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ +++.++||+|++|++|++++.|+++++.+
T Consensus 222 g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 222 GKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999995 78999999999999999999999998754
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=1.3e-22 Score=213.14 Aligned_cols=116 Identities=27% Similarity=0.456 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ ++|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 34566778999999999999888854 5799999999999999999999999999999999999999999999998
Q ss_pred hC--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~--g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus 185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76 89999999995 7899999999999999999999998764
No 34
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.7e-22 Score=205.21 Aligned_cols=115 Identities=26% Similarity=0.384 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++.+++++++++.+||. +..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 118 EEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 344557889999999996 566764 45799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|||+++|++ .++.+++|||++|++|++++.|+++++.
T Consensus 193 ~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 193 KEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 64 99999999995 7899999999999999999999988764
No 35
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.6e-22 Score=206.52 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++.+++++++++.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 138 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 212 (305)
T PRK13651 138 KEEAKKRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN 212 (305)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 445667899999999996 667764 45799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++|.|||+++|++ .++.+.+|+|++|++|++++.|+++++.
T Consensus 213 ~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 213 KQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8899999999995 7789999999999999999999998864
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=1.9e-22 Score=207.53 Aligned_cols=114 Identities=32% Similarity=0.516 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.++|.+..++.++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 111 ~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g 185 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185 (303)
T ss_pred HHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 345667889999999988888654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+|||+++|++ +++.++||++++|++|++++.|+++++.+
T Consensus 186 ~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 186 KTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999996 78999999999999999999999987643
No 37
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.8e-22 Score=202.43 Aligned_cols=113 Identities=28% Similarity=0.377 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 113 DEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 344567889999999988887754 579999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 188 g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 188 GKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999995 678899999999999999999998654
No 38
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=1.4e-22 Score=187.20 Aligned_cols=114 Identities=28% Similarity=0.426 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++.++..+||.++.+++ +.+|||||||||++||.|+.+-+||+||||+|.|||.-+.+...++.+++.
T Consensus 104 a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred HHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999884 567999999999999999999999999999999999999999999999996
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++.|++++||+| +++.++.|+++++++|+|.++|+.++..
T Consensus 179 ~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 179 RKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 689999999998 7899999999999999999999988653
No 39
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=2e-20 Score=227.37 Aligned_cols=116 Identities=28% Similarity=0.393 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++.+|+.+ ++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 1036 ~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~ 1109 (2272)
T TIGR01257 1036 EEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S 1109 (2272)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C
Confidence 445677899999999998888865 4699999999999999999999999999999999999999999999995 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 126 (546)
|+|||++||++ .++..++|||++|++|+++..|+++.+++.|
T Consensus 1110 g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1110 GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999995 7899999999999999999999999887655
No 40
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=2e-22 Score=211.19 Aligned_cols=117 Identities=27% Similarity=0.416 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+. +++|||||||||+|||+|+.+|++|+|||||+|||..++.++.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 3556778899999999999988874 46799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ |.|+|++||++ .++.+++|++++|++|+++..|+++++.+
T Consensus 182 ~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 182 RRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 74 89999999996 78999999999999999999999987643
No 41
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=210.84 Aligned_cols=116 Identities=27% Similarity=0.494 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||.+..|+. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 3456778999999999999888774 46799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |+|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus 184 ~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 184 QQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 74 89999999995 7899999999999999999999998764
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=2.4e-22 Score=210.52 Aligned_cols=115 Identities=26% Similarity=0.388 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.++|++..|+. +..|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 345567899999999999888874 467999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus 185 ~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 185 ELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 89999999995 7899999999999999999999998764
No 43
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=2.5e-22 Score=198.99 Aligned_cols=112 Identities=32% Similarity=0.474 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 193 (236)
T cd03219 119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193 (236)
T ss_pred HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 44567889999999988777754 5699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 194 ~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 194 ITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999996 688899999999999999999988764
No 44
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.5e-22 Score=205.35 Aligned_cols=126 Identities=29% Similarity=0.463 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.++..++++++++.+||. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 149 ~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~ 223 (320)
T PRK13631 149 KSEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK 223 (320)
T ss_pred HHHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 344556788999999996 56665 345799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH---HHHHHcCCCCC
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCP 134 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~---~~f~~~g~~~p 134 (546)
++|+|||+++|++ +++.+.+|++++|++|+++..|++++.. +.+...|...|
T Consensus 224 ~~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 224 ANNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 8899999999995 6788999999999999999999998764 23444555543
No 45
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=200.72 Aligned_cols=117 Identities=31% Similarity=0.457 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++.+++.+|+++|+.+.|++.++. ++.+|||||||||++||+|+.+|++|+||||+++||..-+.++.+.|+++.
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~ 184 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999987 778999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ |.|++++|||+ .|+++++|||++|++|+|...|+++++.+
T Consensus 185 ~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 185 DRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 75 99999999995 89999999999999999999999998743
No 46
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=2.5e-22 Score=186.84 Aligned_cols=111 Identities=31% Similarity=0.415 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++|.++|+.+||.+.++. .+.+|||||||||+||||++.+|++|+.||||.+|||..+.++++++.++.
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 567889999999999999998877 567899999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
+.|+||++.||+ ..-+-.+-.|++.|++|+++....
T Consensus 185 r~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 185 RLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999 577888889999999999987653
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=3.4e-22 Score=207.76 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++.+++++++++.+||. +..++ ++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++
T Consensus 133 ~~~~~~~~~~~~l~~vgl~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 133 SRQEVKDRVKAMMLKVGLLPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CHHHHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3455677888999999994 45555 55689999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.++ |.|+|++||++ ..+.+++|+|++|++|+++..|+++++.
T Consensus 208 ~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 208 QREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 874 99999999995 7888999999999999999999988764
No 48
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.9e-22 Score=201.47 Aligned_cols=125 Identities=26% Similarity=0.445 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||.+..|+.+ +.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 115 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 115 EDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 3445577899999999998887754 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH---HHHHcCCCC
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE---FFAQAGFPC 133 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~---~f~~~g~~~ 133 (546)
+ |+|||+++|++ +++.+++|++++|++|++++.|++++..+ .....+.++
T Consensus 190 ~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 243 (283)
T PRK13636 190 ELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL 243 (283)
T ss_pred hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCC
Confidence 5 89999999995 67888999999999999999999987653 233445443
No 49
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-22 Score=195.96 Aligned_cols=104 Identities=33% Similarity=0.419 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++++++++++.|+.+||.+.+|. ++++|||||||||+|||+|+.+|+||+||||++.||..++.++.+.|.++.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 467788899999999999999988 788999999999999999999999999999999999999999999999987
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
+ .++||+++||+. +|+..++|||++|+++
T Consensus 178 ~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 178 EETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 6 689999999995 8999999999999984
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.2e-22 Score=197.88 Aligned_cols=111 Identities=32% Similarity=0.490 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3467788999999987777744 57999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 196 ~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 196 ITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999996 678889999999999999999998764
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.4e-22 Score=208.14 Aligned_cols=115 Identities=31% Similarity=0.465 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||++..++.+ +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 114 KAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445677899999999998887754 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |+|||+++|++ +++.+++|++++|++|++++.|+++++.
T Consensus 189 ~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 189 ELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 89999999995 7888999999999999999999988764
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=4.2e-22 Score=196.91 Aligned_cols=112 Identities=29% Similarity=0.487 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 183 (232)
T cd03218 109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183 (232)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 44567889999999988877754 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus 184 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 184 IGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999996 689999999999999999999988764
No 53
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.9e-22 Score=206.35 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++.++++.++++.+||.+ ..++ +++.||||||||++||++|+.+|++|++||||+|||..++.++++.|+++.
T Consensus 127 ~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 127 AAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 4456678899999999963 5555 556899999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ .|.|+|++||+. ..+.+++|+|++|++|+++..|+++++.
T Consensus 202 ~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 202 QELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 7 499999999995 7888899999999999999999998764
No 54
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.5e-22 Score=194.95 Aligned_cols=107 Identities=33% Similarity=0.477 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~ 180 (213)
T cd03259 106 EIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180 (213)
T ss_pred HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 44567889999999988877755 46999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
|+|||+++|++ .++.+++|++++|++|+++..|
T Consensus 181 ~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 181 GITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 89999999996 6788999999999999998765
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.1e-22 Score=195.52 Aligned_cols=111 Identities=33% Similarity=0.556 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.+++++++++.+||++..++.+ ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 181 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988877755 469999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus 182 ~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 182 GMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 89999999996 68899999999999999999998765
No 56
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5e-22 Score=206.24 Aligned_cols=118 Identities=26% Similarity=0.367 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||.+..+. -+.++++|||||||||+||++|+.+|++|++||||+|||+.++.++++.|+++++
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999753211 1225678999999999999999999999999999999999999999999999987
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|.|+|++||+. ..+.+++|+|++|++|+++..|+++++.
T Consensus 202 ~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 202 KENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 599999999995 6788999999999999999999998764
No 57
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8e-22 Score=199.71 Aligned_cols=113 Identities=30% Similarity=0.501 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 186 (271)
T PRK13638 112 EITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186 (271)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 44566788999999988877754 5699999999999999999999999999999999999999999999998779
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus 187 ~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 187 NHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999996 6788999999999999999999988754
No 58
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=4.8e-22 Score=208.44 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.++++.++++.+||++..++.. ..|||||||||+|||+|+.+|+||+|||||+|||+.++.++.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 103 EQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999988887754 56999999999999999999999999999999999999999999999986
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|+|||++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus 178 ~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 178 TLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 489999999995 7899999999999999999999998764
No 59
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.5e-22 Score=200.40 Aligned_cols=114 Identities=31% Similarity=0.473 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||++..|+.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 4455678899999999998887754 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |+|||+++|++ .++ ..+|++++|++|+++..|++++..
T Consensus 189 ~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 189 DYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred hcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5 99999999996 566 589999999999999999998764
No 60
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=5.6e-22 Score=206.16 Aligned_cols=118 Identities=27% Similarity=0.438 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++..+++.++++.+||.+..+. + +.++++|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34556788899999999754322 2 246788999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|+|++|||+ ..+.+++|++++|++|+++..|+++++.
T Consensus 210 ~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 210 EFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4 99999999995 6788899999999999999999998764
No 61
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=4.2e-22 Score=211.42 Aligned_cols=113 Identities=33% Similarity=0.489 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ +.||||||||+.||++|+++|++|+|||||+|||+.++.++++.|++++++|
T Consensus 115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 34577899999999998888855 5699999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|||+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 190 ~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 190 KTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999995 7899999999999999999999998753
No 62
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=4.9e-22 Score=209.54 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+.+.+++++++++.+||++..|+. +.+|||||||||+|||+|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 445567889999999999988885 457999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 99999999996 7899999999999999999999998764
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5e-22 Score=197.41 Aligned_cols=111 Identities=28% Similarity=0.409 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g 84 (546)
.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 187 (239)
T cd03296 113 IRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 (239)
T ss_pred HHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3466788999999988777754 469999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 188 ~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 188 VTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999996 678899999999999999999988764
No 64
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.3e-22 Score=201.70 Aligned_cols=114 Identities=30% Similarity=0.428 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+++++++++.+||+ +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 119 ~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 193 (287)
T PRK13641 119 DEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193 (287)
T ss_pred HHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 44566789999999997 5777754 56999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 194 ~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 194 AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 899999999995 7889999999999999999999988754
No 65
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.3e-22 Score=201.17 Aligned_cols=115 Identities=27% Similarity=0.467 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++..++++++++.+||+ +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~ 192 (286)
T PRK13646 118 LDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 (286)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 445567889999999996 667764 45799999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ .|+|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus 193 ~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 193 TDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6 589999999995 6788999999999999999999988754
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=6.9e-22 Score=196.48 Aligned_cols=113 Identities=26% Similarity=0.435 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.+||++..|+.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 111 EEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred HHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 344567889999999988777744 579999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 186 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 186 GMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999996 678899999999999999999988764
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=5.6e-22 Score=197.35 Aligned_cols=112 Identities=31% Similarity=0.452 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 195 (243)
T TIGR02315 121 EDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED 195 (243)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34567888999999988777744 56999999999999999999999999999999999999999999999976 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 196 ~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 196 GITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 89999999996 678899999999999999999988764
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=8.6e-22 Score=196.92 Aligned_cols=112 Identities=31% Similarity=0.465 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..|+.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 120 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (250)
T PRK11264 120 EATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194 (250)
T ss_pred HHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 34567888999999988777744 5799999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 195 ~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 195 RTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999995 678899999999999999999988764
No 69
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.9e-22 Score=200.42 Aligned_cols=114 Identities=37% Similarity=0.535 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888754 579999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ +++.+.+|++++|++|++++.|++++..
T Consensus 187 ~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 187 YGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred cCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 89999999996 6888999999999999999999998764
No 70
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=4.8e-22 Score=196.60 Aligned_cols=110 Identities=33% Similarity=0.505 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 34566889999999988777755 469999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+..
T Consensus 165 ~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 165 RVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 89999999996 6889999999999999999888654
No 71
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.3e-22 Score=205.05 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.++++.++++.+||.+..+. -+.++.+|||||||||+||++|+.+|+||+|||||+|||+.++.++++.|+++.+ .
T Consensus 131 ~~~~~~~~~L~~~gL~~~~~~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 131 WRKRRAIELLHRVGIKDHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 345678899999999753221 1235678999999999999999999999999999999999999999999999987 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|||++||++ ..+.+++|+|++|++|++++.|+++++.
T Consensus 209 g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999995 7888999999999999999999988754
No 72
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=7.8e-22 Score=202.80 Aligned_cols=114 Identities=29% Similarity=0.420 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..|+.+ +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~- 181 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK- 181 (301)
T ss_pred HHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-
Confidence 445677899999999999888865 46999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++|||+++|++ +++.++||++++|++|++++.|+.++...
T Consensus 182 ~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 182 DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 79999999995 78999999999999999999999998654
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.7e-22 Score=198.93 Aligned_cols=113 Identities=24% Similarity=0.365 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 136 EREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988888755 46999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 211 g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 211 QKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 89999999995 6788999999999999999999887653
No 74
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=9.9e-22 Score=204.08 Aligned_cols=114 Identities=26% Similarity=0.466 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 345667899999999998887754 579999999999999999999999999999999999999999999999864
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999995 7899999999999999999999998764
No 75
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.1e-22 Score=208.12 Aligned_cols=115 Identities=27% Similarity=0.399 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+.+.+++++++++.+||.+..++. +++|||||||||+|||+|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 456677899999999999888774 457999999999999999999999999999999999999999999999876
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 198 ~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 198 RVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 589999999995 7899999999999999999999998764
No 76
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.6e-22 Score=207.76 Aligned_cols=115 Identities=28% Similarity=0.451 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||++..++.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678899999999998888754 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus 182 ~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 89999999995 7899999999999999999999998764
No 77
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=7e-22 Score=182.04 Aligned_cols=117 Identities=27% Similarity=0.423 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.+..++++..|.+.||.+.+|. ++..|||||+||++|||+|+.+|+++++|||||.|||.-.-++++.+++|
T Consensus 124 ~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 124 VSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred CCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 4678888999999999999998886 66779999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+++|+|.+++||.. ....+...+|+.|.+|.+-..|+|+++.
T Consensus 199 AeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 199 AEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHHh
Confidence 99999999999995 7888999999999999999999999763
No 78
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.2e-22 Score=194.65 Aligned_cols=112 Identities=30% Similarity=0.427 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+..+.++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (233)
T cd03258 116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 (233)
T ss_pred HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999988877754 569999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus 191 ~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 191 GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 89999999996 678899999999999999999987764
No 79
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=8.1e-22 Score=192.30 Aligned_cols=108 Identities=26% Similarity=0.435 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 344567889999999988887755 56999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
.|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 180 ~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 180 LGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 489999999996 6888999999999999999876
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.6e-22 Score=192.90 Aligned_cols=110 Identities=33% Similarity=0.432 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999988777754 56999999999999999999999999999999999999999999999975 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChh
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 120 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~ 120 (546)
|+|||+++|++ .++.+++|++++|+ +|+++..++.+
T Consensus 182 ~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 182 GKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 89999999996 67889999999999 79999888754
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=7.8e-22 Score=192.93 Aligned_cols=103 Identities=31% Similarity=0.445 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 188 (216)
T TIGR00960 114 DANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG 188 (216)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC
Confidence 45567889999999988877754 5699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
.|||+++|++ +++.+++|++++|++|++
T Consensus 189 ~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 189 TTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999996 678889999999999974
No 82
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.3e-21 Score=196.80 Aligned_cols=114 Identities=32% Similarity=0.521 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..+++.++++.+||++..++.+ +.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (275)
T PRK13639 112 EEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186 (275)
T ss_pred HHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 345567889999999998888755 469999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus 187 ~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 187 GITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999995 6788899999999999999999998864
No 83
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=8.7e-22 Score=192.77 Aligned_cols=108 Identities=34% Similarity=0.520 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 111 DELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 345677899999999998888755 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
|+|||+++|++ .++.+++|++++|++|+++..|
T Consensus 186 ~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 186 GKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999996 6888999999999999998754
No 84
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=8.2e-22 Score=190.72 Aligned_cols=115 Identities=30% Similarity=0.448 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.++++.++|+.+||.+.+|+..|+ ||+|||||+.||++|+++|++|+||||.+||.+..+.++.+.|+++.+
T Consensus 124 ~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 124 REARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred HHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999998875 999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.|.||+++.|+. .-++.+||||++|+.|+++..|+|+++.+
T Consensus 199 ~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 199 GGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 579999999995 78999999999999999999999998754
No 85
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=9.5e-22 Score=193.79 Aligned_cols=111 Identities=28% Similarity=0.432 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||.+..++... +.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~ 191 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-Y 191 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-c
Confidence 45678899999999877666430 3579999999999999999999999999999999999999999999999887 9
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 192 tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 192 TIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999996 67889999999999999999998764
No 86
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=200.11 Aligned_cols=118 Identities=32% Similarity=0.483 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++|+.++|.+++++.||+. ..+ ++++++|||||||++|||+++.+|++++||||||.||-.-+.+|+++|++
T Consensus 397 ls~~eR~~rv~~aL~EVGLDp~~r~-----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~ 471 (534)
T COG4172 397 LSAAERDQRVIEALEEVGLDPATRN-----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471 (534)
T ss_pred CCHHHHHHHHHHHHHHcCCChhHhh-----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHH
Confidence 367899999999999999974 344 38899999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.+ .|.+-++++|| ..-+-++||+|++|++|++|..|+++++.+
T Consensus 472 LQ~k~~LsYLFISHD-L~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 472 LQQKHGLSYLFISHD-LAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHhCCeEEEEecc-HHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 986 69999999999 588999999999999999999999997654
No 87
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=9.5e-22 Score=184.26 Aligned_cols=115 Identities=29% Similarity=0.520 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++++.+++++|+++++.+++|++- ..||||||||+.|||+|+.+|+.++||||++|.||.+..++.++++.|+..
T Consensus 114 ~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r 188 (243)
T COG1137 114 AERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188 (243)
T ss_pred HHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence 356677889999999999999965 469999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|..|++|=|.. -|...++||..++++|+++++|+++++.+
T Consensus 189 giGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 189 GIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999996 68999999999999999999999998653
No 88
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=198.19 Aligned_cols=114 Identities=32% Similarity=0.462 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445677899999999998888855 56999999999999999999999999999999999999999999999986
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|+|||+++|++ +++.. +|++++|++|+++..|+++++.
T Consensus 193 ~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 193 KYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred hcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 499999999996 56655 9999999999999999998764
No 89
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.8e-21 Score=196.65 Aligned_cols=114 Identities=31% Similarity=0.466 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+++++++++.+||. ...++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 119 EEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34456678899999997 4556644 56999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 194 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 194 SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 799999999996 6788999999999999999999988763
No 90
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-21 Score=192.87 Aligned_cols=112 Identities=23% Similarity=0.358 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
.+++++++++.+||++..|+.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999988888755 56999999999999999999999999999999999999999999999976 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|+++|++ .++.+++|++++|++|++++.|++++..
T Consensus 181 ~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 181 LTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999996 6788999999999999999999887653
No 91
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=197.53 Aligned_cols=113 Identities=30% Similarity=0.456 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 185 (274)
T PRK13644 111 IEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 445667889999999998888754 569999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ .++ ..+|++++|++|++++.|++++..
T Consensus 186 g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 186 GKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999996 566 579999999999999999988753
No 92
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=1.7e-21 Score=197.10 Aligned_cols=111 Identities=27% Similarity=0.422 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g 84 (546)
.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 120 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 194 (269)
T PRK11831 120 LHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG 194 (269)
T ss_pred HHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 3456788999999998888755 469999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 195 ~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 195 VTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred cEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999995 788999999999999999999998765
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-21 Score=194.05 Aligned_cols=113 Identities=26% Similarity=0.494 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 112 EQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 344567889999999987766644 579999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 187 g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 187 GLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999996 689999999999999999999998765
No 94
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1.5e-21 Score=205.08 Aligned_cols=113 Identities=31% Similarity=0.516 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.+++++++++.+||++..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 107 ~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 107 ERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999998888754 569999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 182 g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 182 GIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 89999999996 7889999999999999999999988764
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=1.6e-21 Score=191.28 Aligned_cols=111 Identities=34% Similarity=0.527 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C
Confidence 34567889999999988877755 46999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 183 ~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 183 RSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999996 678889999999999999999988753
No 96
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.8e-21 Score=193.77 Aligned_cols=113 Identities=27% Similarity=0.490 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 4 SEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++.+++++++++.+||.+ ..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 344567889999999985 56664 45799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ |+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 183 ~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 183 QELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 74 89999999996 678899999999999999999988764
No 97
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=194.78 Aligned_cols=113 Identities=27% Similarity=0.402 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+.++++.++++.+||.+.. ++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 200 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34456788999999997653 55 3457999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 201 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 201 EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 899999999996 678889999999999999999988764
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=2.3e-21 Score=193.57 Aligned_cols=112 Identities=29% Similarity=0.447 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 4 SEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+++++++++.+||. +..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 115 KELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 34456788999999997 555553 457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++++ +|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 190 ~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 190 LKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9874 8999999996 678899999999999999999998765
No 99
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=1.9e-21 Score=192.22 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCc---ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 6 KRTLVERTIIEMGLQ---DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+++++++++.+||. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 99 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 99 ARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred HHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 345688999999997 345554 456999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |+|||+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 174 ~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 174 LFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4 89999999996 6888999999999999999999987653
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=195.11 Aligned_cols=110 Identities=24% Similarity=0.383 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~ 85 (546)
.++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 131 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 205 (255)
T PRK11300 131 LDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV 205 (255)
T ss_pred HHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 356788899999988777755 569999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 206 tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 206 TVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 999999995 788899999999999999999998764
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.7e-21 Score=195.73 Aligned_cols=114 Identities=29% Similarity=0.434 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.++.+++++++++.+||++..++.+ ..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445677899999999998888755 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |+|||+++|++ .++. .+|++++|++|++++.|+++++.
T Consensus 189 ~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 189 QKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 5 89999999996 5665 59999999999999999988764
No 102
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=1.5e-21 Score=189.42 Aligned_cols=101 Identities=32% Similarity=0.464 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 56889999999998887754 5799999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTV 114 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v 114 (546)
|+++|++ .++.+++|++++|++|+++
T Consensus 180 i~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 180 IVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999996 6788899999999999975
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=205.67 Aligned_cols=114 Identities=26% Similarity=0.426 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++++++.+||++..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 139 EERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 44567788999999998888774 457999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 214 ~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 214 HQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 589999999995 7889999999999999999999988754
No 104
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=2.5e-21 Score=192.62 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++++++++.+||. +..++.++ .+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (243)
T TIGR01978 120 LKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR 195 (243)
T ss_pred HHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCc
Confidence 46788899999997 45666432 24999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ +++... +|++++|++|++++.|+++++.
T Consensus 196 tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 196 SFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999996 677777 8999999999999999987543
No 105
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.7e-21 Score=189.64 Aligned_cols=108 Identities=35% Similarity=0.580 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 344567889999999988777754 569999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 178 ~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 178 GKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 89999999996 6788999999999999998764
No 106
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.1e-21 Score=201.40 Aligned_cols=118 Identities=27% Similarity=0.471 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++|+++.+.|+|++..|+ ++++|||||||||+|||+|+.+|+++++|||+|+||...+.++...|+++
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence 3678899999999999999999998 56789999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ .|.|+|.+|||. .|+..++|||.+|++|++...|++.++-+
T Consensus 180 h~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 180 HERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 87 589999999995 89999999999999999999999998753
No 107
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=2.4e-21 Score=204.12 Aligned_cols=115 Identities=27% Similarity=0.423 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++++++.+||++..|+.+ ..||||||||++||++|+++|+||+|||||+|||+.++.++.+.|+++++
T Consensus 138 ~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 138 EAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 4566778899999999998888855 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 213 ~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 213 KLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 4 99999999995 7899999999999999999999998764
No 108
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.5e-21 Score=194.05 Aligned_cols=112 Identities=28% Similarity=0.402 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+..++++++++.+|+.+..|+.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 118 EMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567888999999988777744 579999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ .++.. +|++++|++|++++.|++++..
T Consensus 193 ~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 193 NITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred CCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 89999999997 56665 9999999999999999988764
No 109
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=2.2e-21 Score=191.02 Aligned_cols=110 Identities=29% Similarity=0.499 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||++..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 90 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 90 DFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164 (223)
T ss_pred HHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 3456888999999988777755 46999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|+++|++ .++.+.+|+++++ +|++++.|++++.
T Consensus 165 tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 165 AILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999996 6789999999999 8999999998765
No 110
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=193.24 Aligned_cols=111 Identities=25% Similarity=0.379 Sum_probs=99.1
Q ss_pred HHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
++.++++++.+ ++.+..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 114 ~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (237)
T PRK11614 114 QERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM 188 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCC
Confidence 44567778888 577666664 457999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus 189 tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 189 TIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999996 6899999999999999999999988653
No 111
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=1.9e-21 Score=208.73 Aligned_cols=117 Identities=32% Similarity=0.411 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.++++++|+++++..||..- ..+.++++||||||||++|||+|+.+|++|++|||||.||+..+.+++++|+++.+
T Consensus 402 ~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 402 GAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred hHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 35677889999999999841 23447889999999999999999999999999999999999999999999999987
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.|.|.++++|| ..-+.++||||.+|++|++|..|+.+++.+
T Consensus 478 e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 478 ELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 49999999999 588999999999999999999998887643
No 112
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=2e-21 Score=189.71 Aligned_cols=106 Identities=35% Similarity=0.562 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (213)
T cd03235 108 ADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182 (213)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 34567889999999988777754 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+|||+++|++ +++.+++|++++|++| +++.|
T Consensus 183 ~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 183 MTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999996 6888999999999886 56554
No 113
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=2.9e-21 Score=193.50 Aligned_cols=112 Identities=29% Similarity=0.414 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.++.++++++.+|+.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 122 ~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 196 (252)
T TIGR03005 122 EAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH 196 (252)
T ss_pred HHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 3456788999999998877764 4579999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|+|+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus 197 ~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 197 DLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999996 678899999999999999999988764
No 114
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=194.46 Aligned_cols=111 Identities=24% Similarity=0.419 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
..++++++++.+||++..++.+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 115 DNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 3456888999999988777754 56999999999999999999999999999999999999999999999987899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 190 tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 190 TVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999996 688999999999999999999988764
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=1.8e-21 Score=190.93 Aligned_cols=111 Identities=28% Similarity=0.478 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 6 KRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 6 ~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
.+++++++++.+ ++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 345567788888 5777677644 5699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 183 VTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999996 678999999999999999999988764
No 116
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-21 Score=192.13 Aligned_cols=111 Identities=27% Similarity=0.432 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..+++++.++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (242)
T PRK11124 117 QALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191 (242)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 34567888999999988777754 5799999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
+|+|+++|++ .++.+++|++++|++|++++.|++++
T Consensus 192 ~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 192 ITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999996 67888999999999999999998765
No 117
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=1.7e-21 Score=189.39 Aligned_cols=105 Identities=34% Similarity=0.528 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++++++.+||++..++.+ +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 104 KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 456788999999988877754 469999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+|+++|++ .++.+++|++++|++|++++.|
T Consensus 179 ii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 179 VLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999996 6788899999999999998765
No 118
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-21 Score=197.14 Aligned_cols=113 Identities=27% Similarity=0.381 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
+..++++++++.++|. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 125 ~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (289)
T PRK13645 125 EAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199 (289)
T ss_pred HHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3446678899999994 5677644 56999999999999999999999999999999999999999999999986
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|+|||+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 200 ~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 200 YKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred cCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 489999999996 6789999999999999999999988753
No 119
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=3.4e-21 Score=191.66 Aligned_cols=110 Identities=24% Similarity=0.406 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 193 (242)
T TIGR03411 120 EKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KH 193 (242)
T ss_pred HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CC
Confidence 4567889999999988777755 46999999999999999999999999999999999999999999999976 68
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 194 tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 194 SVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999995 788899999999999999999987764
No 120
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.86 E-value=4.1e-21 Score=190.51 Aligned_cols=112 Identities=38% Similarity=0.568 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+..+.++++++.+||++..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 34567888999999988877755 46999999999999999999999999999999999999999999999985 6
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|+|+++|++ .++. .+|++++|++|+++..|++++..
T Consensus 183 ~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 183 GLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 89999999996 5665 59999999999999999887654
No 121
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=2.7e-21 Score=194.85 Aligned_cols=111 Identities=28% Similarity=0.519 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.+++++++++.+||.+..|+.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 128 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 202 (262)
T PRK09984 128 EQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202 (262)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999988777755 46999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|.|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 203 g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 203 GITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 89999999996 67899999999999999999998875
No 122
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.4e-21 Score=194.26 Aligned_cols=114 Identities=30% Similarity=0.466 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||++..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 117 RPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 345567789999999999877774 467999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|||+++|++ .++ ..+|++++|++|+++..|+++++.
T Consensus 192 ~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 192 KNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred hcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 4 89999999996 556 579999999999999999998764
No 123
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=3.8e-21 Score=194.17 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.+||. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 125 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 125 EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3456788999999996 5667644 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ ..+.+++|++++|++|++++.|+++++.
T Consensus 200 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 200 FGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred cCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 89999999995 6788899999999999999999988653
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=3.4e-21 Score=193.74 Aligned_cols=112 Identities=33% Similarity=0.444 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~------~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
.+++++++++.+||.+..++.+ ..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 111 DDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred HHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 3456888999999988777755 569999999999999999 59999999999999999999999999999
Q ss_pred HH-hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ ++|.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 186 ~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 186 LAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 98 5789999999996 6788899999999999999999887653
No 125
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=3.5e-21 Score=193.37 Aligned_cols=111 Identities=33% Similarity=0.514 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 114 DAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188 (256)
T ss_pred HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 3457889999999988777755 46999999999999999999999999999999999999999999999987789
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 189 tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 189 TVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999996 688899999999999999999988764
No 126
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.1e-21 Score=192.12 Aligned_cols=115 Identities=25% Similarity=0.374 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
..+.++++++.+||.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~ 196 (250)
T PRK14245 119 IRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDY 196 (250)
T ss_pred HHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence 3456788999999864321111 12456799999999999999999999999999999999999999999999995 479
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus 197 tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 197 TIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred eEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999996 6788999999999999999999988763
No 127
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.5e-21 Score=188.14 Aligned_cols=106 Identities=32% Similarity=0.496 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g 84 (546)
.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (214)
T cd03297 108 DRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182 (214)
T ss_pred HHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3467888999999987777644 569999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+|||+++|++ .++.+++|++++|++|+++..|
T Consensus 183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 183 IPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999995 6788999999999999998765
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.1e-21 Score=188.05 Aligned_cols=106 Identities=36% Similarity=0.509 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..+.++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 179 (211)
T cd03264 106 EVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-D 179 (211)
T ss_pred HHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C
Confidence 34567889999999988777754 56999999999999999999999999999999999999999999999986 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
.|||+++|++ .++.+++|++++|++|+++..|
T Consensus 180 ~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 180 RIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 8999999996 6788899999999999998765
No 129
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.9e-21 Score=194.07 Aligned_cols=112 Identities=28% Similarity=0.411 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
.+++++++++.+||++..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~ 194 (265)
T PRK10253 120 DEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3457889999999988777754 57999999999999999999999999999999999999999999999987 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 195 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 195 YTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999996 6899999999999999999999987754
No 130
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=3.2e-21 Score=174.84 Aligned_cols=114 Identities=25% Similarity=0.410 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+.++.++++.+.|.+.+|+ .+-.|||||+|||+|||+|+.+|++|++||||+.|||.-..++++++|+|
T Consensus 113 l~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 113 LSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred CCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 5778889999999999999999998 56679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
+..|.|-++++|.. .-..+.+.+|+.|.+|+++..|+.+
T Consensus 188 ~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 188 AETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999995 6778889999999999999999875
No 131
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.9e-21 Score=201.67 Aligned_cols=111 Identities=28% Similarity=0.466 Sum_probs=102.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~ 85 (546)
+++++++++.+||++..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999998888754 579999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 181 tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 181 PILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred eEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999996 7899999999999999999999998764
No 132
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.85 E-value=5.1e-21 Score=188.55 Aligned_cols=108 Identities=30% Similarity=0.395 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 117 KEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 344556788999999988888765 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
|.|||+++|++ .++.+++|++++|++|+++..|
T Consensus 192 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 192 GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 89999999995 6788999999999999998765
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.8e-21 Score=187.36 Aligned_cols=106 Identities=29% Similarity=0.426 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999988777754 57999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
.|||+++|++ .++.+++|++++|++|+++..|
T Consensus 180 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 180 MTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999995 7888999999999999998654
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.5e-21 Score=193.63 Aligned_cols=111 Identities=37% Similarity=0.487 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g 84 (546)
.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 124 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 124 DREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3467889999999988777755 469999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus 199 ~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 199 LTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999996 688899999999999999999988764
No 135
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=3.9e-21 Score=187.21 Aligned_cols=102 Identities=37% Similarity=0.550 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34567888999999987777754 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
+|||+++|++ .++.+++|++++|++|+
T Consensus 185 ~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 185 KTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999996 68888999999999985
No 136
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=5.1e-21 Score=193.47 Aligned_cols=112 Identities=20% Similarity=0.336 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+..+.++++++.+||. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (267)
T PRK15112 124 QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3456788999999994 5666643 569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 199 ~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 199 QGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 89999999996 788889999999999999999988764
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=3.9e-21 Score=188.98 Aligned_cols=107 Identities=32% Similarity=0.478 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+++.++++.+||++..|+.+ +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV 177 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 46788999999998877754 4699999999999999999999999999999999999999999999998789999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
|+++|++ .++.+.+|++++|++|+++..|++.
T Consensus 178 ii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 178 ILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999996 6788999999999999999999865
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.1e-21 Score=191.41 Aligned_cols=110 Identities=24% Similarity=0.393 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+++++++++.+|+. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 201 (258)
T PRK14268 127 LDGVVENALRSAALWDETSDRLKS-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201 (258)
T ss_pred HHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 345678899999984 33444 345799999999999999999999999999999999999999999999996
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+ |+|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 202 ~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 202 K-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 5 79999999995 678899999999999999999998765
No 139
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.7e-21 Score=188.95 Aligned_cols=113 Identities=28% Similarity=0.476 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+..+.++++++.+||.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~ 179 (235)
T cd03299 105 EIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179 (235)
T ss_pred HHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 44566788999999988888755 569999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|+|+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus 180 ~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 180 GVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999996 6788999999999999999999887643
No 140
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.7e-21 Score=184.48 Aligned_cols=116 Identities=27% Similarity=0.438 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+++|+..|+.-.|- ++.|++= ....+|||||+||++|||+|+.+|+||++|||||.|||.+..+|-+++.+|++
T Consensus 120 ~~ldeiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~ 197 (253)
T COG1117 120 KELDEIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK 197 (253)
T ss_pred HHHHHHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh
Confidence 45678899999998884 4666642 24568999999999999999999999999999999999999999999999984
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.-|||++||.+ ..+.+..|+...+..|+++.+|+++++.
T Consensus 198 -~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 198 -KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred -ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 58999999995 7899999999999999999999999753
No 141
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=5.8e-21 Score=189.57 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..++++++++.+||.+..|+.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 344566788999999998888865 469999999999999999999999999999999999999999999999864
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
|+|||+++|++ +++.+++|++++|++|++++.|
T Consensus 203 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 203 RGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 89999999996 6788999999999999998765
No 142
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=4.6e-21 Score=187.03 Aligned_cols=103 Identities=31% Similarity=0.446 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 186 (214)
T cd03292 112 EIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186 (214)
T ss_pred HHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 34567889999999988777754 5699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
+|||+++|++ .++.+++|++++|++|++
T Consensus 187 ~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 187 TTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999996 678889999999999974
No 143
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.85 E-value=4.7e-21 Score=187.07 Aligned_cols=102 Identities=35% Similarity=0.508 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (214)
T TIGR02673 113 EIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187 (214)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34567889999999987777754 5699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
+|||+++|++ .++.+++|++++|++|+
T Consensus 188 ~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 188 TTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999996 78889999999999985
No 144
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.7e-21 Score=190.62 Aligned_cols=111 Identities=25% Similarity=0.363 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+++++++++.+++. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 123 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 123 LDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 456778888988873 34455 446799999999999999999999999999999999999999999999996
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ +.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 198 ~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 198 E-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4 79999999996 6788999999999999999999988753
No 145
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.9e-21 Score=190.37 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 199 (253)
T PRK14242 122 LAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RY 199 (253)
T ss_pred HHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CC
Confidence 3567788899999854221111 124567999999999999999999999999999999999999999999999964 79
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 200 tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 200 TIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred eEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999996 678899999999999999999988764
No 146
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=9.9e-21 Score=189.32 Aligned_cols=112 Identities=29% Similarity=0.436 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTL 77 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-------~P~il~LDEPtsgLD~~~~~~v~~~L 77 (546)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|+|||||+|||+.++..+.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L 176 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 34567889999999988777754 5699999999999999998 67999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 78 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 78 ~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++++++|.|||+++|++ .++.+++|++++|++|+++..|+.+++
T Consensus 177 ~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 177 SELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99988899999999995 678999999999999999999988764
No 147
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.9e-21 Score=187.73 Aligned_cols=109 Identities=28% Similarity=0.369 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (233)
T PRK11629 120 AEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194 (233)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344567899999999988777744 56999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
+|+|||+++|++ .++.. +|++++|++|+++..|+.
T Consensus 195 ~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 195 QGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 589999999996 56655 689999999999988864
No 148
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.85 E-value=4.9e-21 Score=187.44 Aligned_cols=102 Identities=33% Similarity=0.508 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (218)
T cd03255 116 ERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA 190 (218)
T ss_pred HHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988777754 56999999999999999999999999999999999999999999999987 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
|+|||+++|++ .++. .+|++++|++|++
T Consensus 191 ~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 191 GTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 89999999996 5665 9999999999974
No 149
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=9.3e-21 Score=186.73 Aligned_cols=105 Identities=51% Similarity=0.832 Sum_probs=94.7
Q ss_pred HHHHH-HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 8 TLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 8 ~~v~~-~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++ .++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~t 195 (226)
T cd03234 121 KRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195 (226)
T ss_pred HHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 34555 888899987777644 569999999999999999999999999999999999999999999999878999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+|+++|++..++.+++|++++|++|++++.|
T Consensus 196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999756899999999999999998875
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.1e-20 Score=187.05 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
...+.++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~ 180 (232)
T cd03300 106 EIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180 (232)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34567788999999988887754 579999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 181 ~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 181 GITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 89999999996 678999999999999999999987654
No 151
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.7e-21 Score=189.57 Aligned_cols=114 Identities=25% Similarity=0.431 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++.++++++.+||.+...+... ..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 199 (251)
T PRK14244 122 LDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NF 199 (251)
T ss_pred HHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 34567889999999653212111 14567999999999999999999999999999999999999999999999964 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 200 tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 200 TIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred eEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999996 678899999999999999999988764
No 152
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=8.6e-21 Score=185.32 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~ 85 (546)
+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 180 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999988777744 579999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 181 tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 181 TLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999995 67888999999999999998875
No 153
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=1.1e-20 Score=190.01 Aligned_cols=111 Identities=30% Similarity=0.436 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
.+++++++++.+++.+ ..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 201 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 3556788999999974 55654 4579999999999999999999999999999999999999999999999874
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|||+++|++ .++.+.+|++++|++|++++.|+++++
T Consensus 202 ~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 202 GLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999995 778889999999999999999998764
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=189.04 Aligned_cols=112 Identities=27% Similarity=0.409 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.++.++++++.+||.+ ..|+ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 118 ELQERVRWALEKAQLWDEVKDRLDA-----PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred HHHHHHHHHHHHcCCCcchhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 34567888999999864 3444 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |+|+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 193 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 193 KK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred hc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 65 79999999996 6788999999999999999999988653
No 155
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=1.1e-20 Score=189.69 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 8 TLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
++++++++.+||.+ ..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 116 ATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 56788999999976 3455 3457999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 191 g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 191 ALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred CcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 89999999996 678899999999999999999998865
No 156
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.7e-21 Score=191.93 Aligned_cols=110 Identities=27% Similarity=0.472 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||.+..|+.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 119 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~ 193 (272)
T PRK15056 119 DRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193 (272)
T ss_pred HHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 34567889999999988888654 6999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|+++++ +|++++.|+++++
T Consensus 194 tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 194 TMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999996 6888999999877 8999999988764
No 157
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=191.41 Aligned_cols=113 Identities=25% Similarity=0.439 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888755 569999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ .++ ..+|++++|++|+++..|++++..
T Consensus 192 ~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 192 RKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 59999999997 456 479999999999999999887653
No 158
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=5.5e-21 Score=184.06 Aligned_cols=120 Identities=29% Similarity=0.468 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
|++++.++.++.+|+.+++......+| ++||.|.+|++.+-.+++++|++++||||+|||||.+.+.+-+.+.++
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l 176 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH
Confidence 678899999999999999998887755 679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 126 (546)
+++|.|||+++|+ .+.+.++||++++|++|+.|.+|+.+++..-|
T Consensus 177 k~~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 177 KEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HhcCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999 58999999999999999999999999987744
No 159
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=1.5e-22 Score=194.57 Aligned_cols=208 Identities=23% Similarity=0.338 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhh-hhHHhhh
Q 009019 224 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM 301 (546)
Q Consensus 224 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~-p~~~~er 301 (546)
+|++.|++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.+++++...+..+...... .....|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544455 777777777666665444443 7788999
Q ss_pred HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009019 302 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 381 (546)
Q Consensus 302 ~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~ 381 (546)
..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +++.+++.++++..++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999888 66777777788888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhh
Q 009019 382 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL 436 (546)
Q Consensus 382 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef 436 (546)
...+..+.+.+..++++++|.+.+.+.+|+ +|+| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~-~~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS-WLRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH-HHHH-HHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999995 3444 9999999999999999876
No 160
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=9e-21 Score=184.87 Aligned_cols=103 Identities=30% Similarity=0.477 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 185 (213)
T cd03262 111 EAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 185 (213)
T ss_pred HHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC
Confidence 34567888999999988777754 5799999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
+|||+++|++ .++.+++|++++|++|++
T Consensus 186 ~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 186 MTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999996 788899999999999974
No 161
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=1.7e-20 Score=187.82 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++++++++.+||. +..++.++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 127 ~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 127 LEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred HHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 35678889999996 35555432 25999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ +.+... +|++++|++|++++.|+++.+
T Consensus 203 tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 203 SIILITHYQ-RLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEecCH-HHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999996 566666 899999999999999998843
No 162
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=1.4e-20 Score=188.61 Aligned_cols=111 Identities=33% Similarity=0.465 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 6 KRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
.++.++++++.+|+. +..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~ 198 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 346778899999996 366664 456999999999999999999999999999999999999999999999876 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|||+++|++ .++...+|++++|++|+++..|+++++
T Consensus 199 ~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 199 GLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 89999999995 688889999999999999999988765
No 163
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=9.6e-21 Score=209.26 Aligned_cols=115 Identities=30% Similarity=0.440 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+.+.+++++++++.+||.+ ..|+. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 127 REAARGEILNCLDRVGIRQAAKRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 3455678899999999975 34664 457999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++++ |.|||+++|++ .++.+++|+|++|++|++++.|+++++.
T Consensus 202 l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 202 LQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9875 89999999996 6788999999999999999999987653
No 164
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=9.6e-21 Score=190.37 Aligned_cols=108 Identities=31% Similarity=0.459 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 111 RDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 456788999999988777754 57999999999999999999999999999999999999999999999975 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
|||+++|++ .++.+++|++++|++|++++.|+.+
T Consensus 186 tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 186 TVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999996 6788999999999999999888654
No 165
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=1.2e-20 Score=185.32 Aligned_cols=104 Identities=31% Similarity=0.402 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..+.++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (222)
T PRK10908 113 DIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187 (222)
T ss_pred HHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC
Confidence 34456788999999988777644 5699999999999999999999999999999999999999999999998788
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTV 114 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v 114 (546)
.|+|+++|++ +++.+.+|++++|++|+++
T Consensus 188 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 188 VTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 9999999996 6788999999999999975
No 166
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=1.4e-20 Score=187.00 Aligned_cols=113 Identities=28% Similarity=0.443 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+..+.++++++.+++.+..|+.. +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~ 180 (237)
T TIGR00968 106 KIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180 (237)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567789999999988777755 469999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus 181 ~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 181 HVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 89999999996 6789999999999999999999988653
No 167
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=1.1e-20 Score=186.10 Aligned_cols=101 Identities=32% Similarity=0.488 Sum_probs=91.2
Q ss_pred HHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 009019 11 ERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 88 (546)
Q Consensus 11 ~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi 88 (546)
+++++.++|. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788999995 5666644 569999999999999999999999999999999999999999999999875 89999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 89 ASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 89 ~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+++|++ .++.+++|++++|++|+++..|
T Consensus 201 ~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 999996 6788899999999999998765
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=207.96 Aligned_cols=112 Identities=21% Similarity=0.390 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..|+.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 121 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 195 (510)
T PRK09700 121 EMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 (510)
T ss_pred HHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 44567889999999998888755 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 196 ~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 196 TAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 9999999995 788899999999999999999998764
No 169
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=189.32 Aligned_cols=111 Identities=28% Similarity=0.372 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+++. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 128 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 202 (260)
T PRK10744 128 EMDERVEWALTKAALWNEVKDKLHQ-----SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHHHHHHHcCCChhhHHHHhc-----CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 3456788999999984 33444 44579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 203 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 203 KQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 64 78999999996 678899999999999999999998765
No 170
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=2e-20 Score=186.80 Aligned_cols=112 Identities=28% Similarity=0.368 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+.+++.++.++|. +..++.+. +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~ 196 (248)
T PRK09580 121 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR 196 (248)
T ss_pred HHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 45677888989985 45555332 36999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ ..+... +|++++|++|++++.|+++.+.
T Consensus 197 tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 197 SFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred EEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999996 566666 8999999999999999988553
No 171
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=9e-21 Score=193.53 Aligned_cols=120 Identities=27% Similarity=0.403 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.++++.++++..|+.+-.... +.++++|||||||||.||++|+.+|++||.||||+.||..-+.+|+++|++|
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 46778889999999999998766554 3489999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.+ .|..++++||| ..-+-+++|||++|.+|+++..|+++++.
T Consensus 204 q~~~gMa~lfITHD-L~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 204 QAELGMAILFITHD-LGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHhCcEEEEEecc-HHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 86 69999999999 57899999999999999999999998765
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.7e-20 Score=189.19 Aligned_cols=113 Identities=25% Similarity=0.381 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999988877744 579999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ .++. .+|++++|++|+++..|++++..
T Consensus 190 ~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 190 YQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999996 5565 69999999999999999988754
No 173
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=189.16 Aligned_cols=111 Identities=29% Similarity=0.398 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
.+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999988777744 56999999999999999999999999999999999999999999999965
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChh
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 120 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~ 120 (546)
+|+|||+++|++ .++.+++|++++|+ +|+++..++.+
T Consensus 178 ~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 178 TGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 589999999996 68899999999998 59999887654
No 174
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.3e-20 Score=207.92 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++.+++++++++.+||++..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 345678899999999988877754 56999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 125 (546)
.|.|||+++|++ ..+.+++|++++|++|++++.|++++..+.
T Consensus 218 ~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 218 SGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 589999999996 678899999999999999999998876554
No 175
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=188.01 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+..++++++++.+||.. ..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 121 ELDERVEWALKKAALWDEVKDRLND-----YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHHHHHHHHHcCCccchhhhhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 34456788999999853 3343 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ ++|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 196 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 196 KK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred hh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 75 69999999996 678899999999999999999998765
No 176
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=186.81 Aligned_cols=110 Identities=31% Similarity=0.385 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
.++++++++.+||+ +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 182 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 35678899999996 45665 3457999999999999999999999999999999999999999999999987 49
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 183 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 183 LTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred CEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999996 678899999999999999999988764
No 177
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=2e-20 Score=201.58 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 344556788999999988887755 569999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 125 (546)
|+|||+++|++ .++.++||++++|++|+++..|+++++..-
T Consensus 193 G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 193 GKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999996 688899999999999999999999887543
No 178
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=4.9e-21 Score=197.52 Aligned_cols=114 Identities=29% Similarity=0.465 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++|++.++.++|++.+++ ++.+|||||||||++||+|+.+|++|+||||.|.||..-+.++...|+++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 45688899999999999998888 5568999999999999999999999999999999999999999999999986
Q ss_pred -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|.|.|++|||. +|.+.++|||.+|++|++.-.|+++++
T Consensus 185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 599999999995 899999999999999999999999986
No 179
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=1.1e-20 Score=206.90 Aligned_cols=111 Identities=23% Similarity=0.352 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++++++.+||++..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.|
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 187 (490)
T PRK10938 113 PARCEQLAQQFGITALLDRRF-----KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187 (490)
T ss_pred HHHHHHHHHHcCCHhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 467889999999998888865 469999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
||+++|++ .++.+.+|++++|++|+++..|++++..
T Consensus 188 vii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 188 LVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999996 7889999999999999999999987653
No 180
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=1.8e-20 Score=189.52 Aligned_cols=112 Identities=24% Similarity=0.335 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+..++++++++.+|+. +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 126 ~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 126 ERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred HHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 3455788999999996 466664 4569999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|+|+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 201 ~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 201 FGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred cCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 89999999996 788889999999999999999998764
No 181
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=207.32 Aligned_cols=112 Identities=24% Similarity=0.396 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.+||. +..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 380 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 380 AELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred HHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 3446788999999996 5677755 469999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 455 g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 455 GVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999996 789999999999999999999977653
No 182
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=1.5e-20 Score=184.44 Aligned_cols=103 Identities=26% Similarity=0.408 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+..+++.++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (221)
T TIGR02211 117 EAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191 (221)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 33567788999999988777754 56999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v 114 (546)
|.|||+++|++ .++ +.+|++++|++|+++
T Consensus 192 ~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 192 NTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 89999999996 456 457999999999975
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=206.70 Aligned_cols=112 Identities=22% Similarity=0.396 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 191 (501)
T PRK10762 117 KMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191 (501)
T ss_pred HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 345678899999999988887654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 192 ~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 192 RGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999996 788999999999999999999987654
No 184
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=189.78 Aligned_cols=111 Identities=31% Similarity=0.431 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQT 76 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~ 76 (546)
.+++++++++.+||.+..++.+ ..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~ 196 (272)
T PRK13547 122 DGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196 (272)
T ss_pred HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 4466888999999987777644 569999999999999999 59999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 77 LRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 77 L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|++++++ |.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 197 l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 197 VRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999875 89999999996 678899999999999999999998765
No 185
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=187.59 Aligned_cols=117 Identities=30% Similarity=0.445 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.++++.++++.+++.+..+... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~ 200 (261)
T PRK14258 122 EIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200 (261)
T ss_pred HHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 33566788999999854221111 124567999999999999999999999999999999999999999999999975 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeC-----CeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~-----G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ .++.+++|++++|++ |+++++|+++++.
T Consensus 201 ~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 201 ELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 89999999996 789999999999999 9999999998763
No 186
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=211.00 Aligned_cols=114 Identities=26% Similarity=0.341 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+++++++++.+||. +..++. +++|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus 437 ~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 437 KAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34557788999999996 566764 457999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|||++||++ ..+.+++|+|++|++|++++.|+++++.
T Consensus 512 ~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 512 DFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 5 89999999995 7899999999999999999999998764
No 187
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=187.57 Aligned_cols=111 Identities=24% Similarity=0.385 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+|+.+ ..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 127 ~~~~~~~~~l~~~~l~~~~~~~l~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 201 (259)
T PRK14274 127 KLQEIVEKSLKDVALWDEVKDRLHT-----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201 (259)
T ss_pred HHHHHHHHHHHHcCCchhhhhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 34556788899999853 2333 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ ++|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 202 ~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 202 KE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 75 78999999996 688899999999999999999998875
No 188
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.8e-20 Score=184.98 Aligned_cols=116 Identities=30% Similarity=0.400 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++.++|+.+||.. ..++ +++++|||||||+.|||+|+.+|+++++|||||.||...+.+++++|+++.
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq 156 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH
Confidence 4567788999999999864 5555 788999999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+ .|.|.++++|| .+.+..++||+.+|..|++|..|+.+++..
T Consensus 157 ~~~~lt~lFIsHD-L~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 157 EELGLTYLFISHD-LSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHhCCeEEEEEEE-HHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 7 59999999999 588999999999999999999999998653
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=206.57 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ .+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 193 (506)
T PRK13549 119 AMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193 (506)
T ss_pred HHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 34567899999999988888755 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 194 ~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 194 IACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999995 788899999999999999999988764
No 190
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-20 Score=187.96 Aligned_cols=111 Identities=27% Similarity=0.410 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+||.+ ..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 135 ELDEIVETSLRKAGLWEEVKDRLHE-----PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHHHHHcCCchhhhHHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 34566788999999964 2333 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 210 ~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 210 RQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred hc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 76 68999999995 678899999999999999999988764
No 191
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.8e-20 Score=186.25 Aligned_cols=109 Identities=27% Similarity=0.392 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++.+++.+ ..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14239 122 DEAVEKSLKGASIWDEVKDRLHD-----SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196 (252)
T ss_pred HHHHHHHHHHcCCchhHHHHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh
Confidence 456777888988743 2333 4567999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++|||+++|++ +++.+.+|++++|++|++++.|+.+++
T Consensus 197 -~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 197 -DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred -CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 68999999996 688899999999999999999998875
No 192
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.2e-20 Score=185.78 Aligned_cols=111 Identities=24% Similarity=0.375 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 193 (251)
T PRK14270 119 ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193 (251)
T ss_pred HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3456678899999884 23444 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 194 ~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 194 KK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred Hh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 76 58999999996 688999999999999999999998875
No 193
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=187.33 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.++|.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 212 (267)
T PRK14237 135 VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N 212 (267)
T ss_pred HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 34566788899999864322222 225568999999999999999999999999999999999999999999999964 7
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 213 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 213 YTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred CEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 8999999996 678899999999999999999998865
No 194
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.7e-20 Score=185.44 Aligned_cols=111 Identities=26% Similarity=0.410 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+|+.+ ..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 120 EADEIVESSLKRVALWDEVKDRLKS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHHHHHHHHHHcCCchhhhHHhhC-----CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 34566888999999864 2333 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ +.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 195 ~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 195 KE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred Hh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 76 58999999995 688899999999999999999998764
No 195
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.4e-20 Score=186.43 Aligned_cols=112 Identities=27% Similarity=0.447 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+||. +..++ .+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 120 DLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 4456778899999984 33444 44679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecChhHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~ 123 (546)
++ ++|||+++|++ .++.+++|++++|+ +|++++.|++++..
T Consensus 195 ~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 195 KQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred hc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 65 68999999996 67889999999997 79999999988653
No 196
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=184.70 Aligned_cols=110 Identities=28% Similarity=0.443 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+++++++++.++|.+ ..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 189 (246)
T PRK14269 115 EEALVVDCLQKVGLFEEVKDKLKQ-----NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189 (246)
T ss_pred HHHHHHHHHHHcCCChhhhHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 3456788999999953 2333 446799999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+ |+|+|+++|++ +++.+.+|++++|++|+++..|++++.
T Consensus 190 ~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 190 H-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred C-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 5 89999999995 778899999999999999999998764
No 197
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=2.4e-20 Score=206.18 Aligned_cols=114 Identities=27% Similarity=0.446 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+.+++++++++.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 399 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 399 AQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 34456788999999997 4677744 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ |.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 474 ~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 474 KHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 5 89999999995 7888999999999999999999987653
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=2.5e-20 Score=205.08 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 191 (510)
T PRK15439 117 SMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191 (510)
T ss_pred HHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 3567889999999998888765 46999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 192 tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 192 GIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999995 788899999999999999999998765
No 199
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=185.36 Aligned_cols=115 Identities=26% Similarity=0.393 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++.+++.++.+|+.+..+.. .+..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 196 (250)
T PRK14262 119 LDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NY 196 (250)
T ss_pred HHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-Cc
Confidence 345677888999985421111 1224567999999999999999999999999999999999999999999999975 78
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 197 tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 197 TIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999996 6788999999999999999999987654
No 200
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=184.88 Aligned_cols=114 Identities=28% Similarity=0.420 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++++++.++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 195 (249)
T PRK14253 118 LDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NY 195 (249)
T ss_pred HHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 3456777888888753211111 124467999999999999999999999999999999999999999999999976 58
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus 196 tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 196 TIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999996 788999999999999999999988764
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=5.6e-20 Score=185.50 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..+.++++++.++|.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g 193 (264)
T PRK13546 119 EIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN 193 (264)
T ss_pred HHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC
Confidence 34456677888899988777754 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.|||+++|++ .++.+++|++++|++|+++..|+.+++.+
T Consensus 194 ~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 194 KTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999995 78889999999999999999999887654
No 202
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=3.4e-20 Score=182.89 Aligned_cols=104 Identities=31% Similarity=0.417 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 196 (228)
T PRK10584 122 QSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196 (228)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999988777754 569999999999999999999999999999999999999999999999764
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~ 115 (546)
|.|||+++|++ .++ +.+|++++|++|+++.
T Consensus 197 ~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 197 GTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 89999999996 456 5599999999999864
No 203
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=204.90 Aligned_cols=112 Identities=26% Similarity=0.407 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.+||. +..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3456788999999995 6677755 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 445 g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 445 GLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999996 789999999999999999999987654
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=186.93 Aligned_cols=109 Identities=26% Similarity=0.434 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+.+.++.+++. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 138 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 138 DEIVEESLTKAALWDEVKDRLHS-----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHHHHHcCCCcchHHHHhc-----CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 45567788888884 23344 4457999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+.|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 213 -~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 213 -EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred -CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 68999999996 678899999999999999999998765
No 205
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=2.8e-20 Score=183.64 Aligned_cols=109 Identities=25% Similarity=0.405 Sum_probs=97.0
Q ss_pred HHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009019 8 TLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 85 (546)
Q Consensus 8 ~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~ 85 (546)
+.++++++.++ +.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++++++ |+
T Consensus 109 ~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (230)
T TIGR03410 109 KIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183 (230)
T ss_pred HHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence 34577788876 566666644 569999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+++|++++|++|+++..|+.+++
T Consensus 184 tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 184 AILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999995 688889999999999999999998765
No 206
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=3.7e-20 Score=204.22 Aligned_cols=113 Identities=29% Similarity=0.434 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCcc-----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQD-----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
.+++++++++.+||.+ ..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 399 ~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 399 ARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567888999999975 35554 4579999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+++ |.|||+++|++ .++.+++|++++|++|+++..|+++++.+
T Consensus 474 ~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 474 REEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 864 89999999996 78899999999999999999999887643
No 207
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.1e-20 Score=203.90 Aligned_cols=109 Identities=20% Similarity=0.317 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
++.++++++.+||. +..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++++|.
T Consensus 373 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 447 (501)
T PRK11288 373 AENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447 (501)
T ss_pred HHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence 45688999999994 67788665 6999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 448 tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 448 AVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred EEEEECCCH-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999995 78999999999999999999998765
No 208
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=202.67 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 184 (491)
T PRK10982 110 KMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184 (491)
T ss_pred HHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 34567889999999988777755 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 185 ~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 185 CGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999995 788899999999999999999987664
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.2e-20 Score=204.24 Aligned_cols=107 Identities=22% Similarity=0.401 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+||. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|.
T Consensus 386 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 460 (510)
T PRK09700 386 QRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460 (510)
T ss_pred HHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 45678999999997 6778755 46999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
|||+++|++ .++.+++|++++|++|+++..++.
T Consensus 461 tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 461 VILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 999999996 789999999999999999988865
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=2.4e-20 Score=205.16 Aligned_cols=109 Identities=26% Similarity=0.381 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+||+ +..|+.+ +.|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++|.
T Consensus 380 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 454 (510)
T PRK15439 380 NAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454 (510)
T ss_pred HHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC
Confidence 45688999999997 6777755 46999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 455 tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 455 AVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999996 78999999999999999999887764
No 211
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.8e-20 Score=186.86 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
++.++++++.+++.+...+.. +..+..||||||||++||++|+++|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 142 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~t 219 (272)
T PRK14236 142 DEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYT 219 (272)
T ss_pred HHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCe
Confidence 456788899999863211111 124567999999999999999999999999999999999999999999999976 689
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus 220 iiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 220 IVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred EEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 99999996 678899999999999999999988764
No 212
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=3.4e-20 Score=176.47 Aligned_cols=101 Identities=38% Similarity=0.562 Sum_probs=91.2
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 009019 11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 89 (546)
Q Consensus 11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~ 89 (546)
.++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+
T Consensus 79 ~q~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii 153 (180)
T cd03214 79 PQALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 (180)
T ss_pred HHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3478889998777664 4579999999999999999999999999999999999999999999999876 899999
Q ss_pred EecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 90 SIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 90 ~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
++|++ +++.+++|++++|++|++++.|
T Consensus 154 ~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 154 VLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99996 6788999999999999998654
No 213
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3e-20 Score=208.88 Aligned_cols=115 Identities=28% Similarity=0.408 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+.+.+++++++++.+||.+ ..++ ++..|||||||||.||++|+.+|++|+|||||+|||+.++.++.++|++
T Consensus 139 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 139 REEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred HHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence 3455678899999999963 3455 4567999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++++ |.|||+++|++ .++.+++|+|++|++|+++..|+++++.
T Consensus 214 l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 214 LQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9864 99999999995 7888999999999999999999987753
No 214
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.7e-20 Score=182.88 Aligned_cols=111 Identities=26% Similarity=0.466 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+++.+ ..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 118 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 118 KLDEIVEKSLKGAALWDEVKDRLKK-----SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHhc-----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 34567788888888742 3344 44679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ |+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 193 ~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 193 KK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred hc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 64 79999999995 678999999999999999999988764
No 215
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.3e-20 Score=183.22 Aligned_cols=110 Identities=29% Similarity=0.429 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+.+++.++.+++. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 122 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14272 122 MEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196 (252)
T ss_pred HHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 45566677777763 33444 3467999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++|+|+++|++ .++.+.+|++++|++|++++.|+++++.
T Consensus 197 -~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 197 -VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred -CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 69999999996 6788899999999999999999988753
No 216
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.1e-20 Score=190.78 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+.++++++..+|.+..++.++. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+
T Consensus 200 ~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Ti 277 (329)
T PRK14257 200 KIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSI 277 (329)
T ss_pred HHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 4467788888885433444443 5678999999999999999999999999999999999999999999999976 6999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+++|++ ..+.+.+|+|++|++|+++..|+++++.
T Consensus 278 i~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 278 IIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999995 7788899999999999999999999864
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.2e-20 Score=187.41 Aligned_cols=109 Identities=27% Similarity=0.413 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++++.++++.+|+. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 156 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~ 230 (286)
T PRK14275 156 EEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG 230 (286)
T ss_pred HHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 45677888888874 33444 4467999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 231 -~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 231 -SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred -CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 58999999996 678899999999999999999998765
No 218
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.83 E-value=4.5e-20 Score=224.39 Aligned_cols=119 Identities=30% Similarity=0.469 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||++.+|+.++ +|||||||||+||++|+.+|+||+|||||+|||+.++.++.+.|+++++
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34456778899999999999988664 6999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 127 (546)
+|+|||+|+|++ +++.++|||+++|++|+++..|+++++.+.|.
T Consensus 2119 ~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2119 EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 899999999995 89999999999999999999999999887764
No 219
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=5.2e-20 Score=182.57 Aligned_cols=90 Identities=33% Similarity=0.553 Sum_probs=83.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++ ..+|++++|++
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~ 211 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEK 211 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEEC
Confidence 4567999999999999999999999999999999999999999999999974 89999999997 556 56999999999
Q ss_pred CeEEEecChhHHH
Q 009019 111 GKTVYFGETSAAF 123 (546)
Q Consensus 111 G~~v~~G~~~~~~ 123 (546)
|++++.|+++++.
T Consensus 212 G~i~~~~~~~~~~ 224 (237)
T cd03252 212 GRIVEQGSHDELL 224 (237)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987654
No 220
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.1e-20 Score=184.26 Aligned_cols=111 Identities=28% Similarity=0.430 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+..++++++++.+|+. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (259)
T PRK14260 122 DLDEIVESALKGAALWQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196 (259)
T ss_pred HHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 3345678889999884 33444 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEe-----CCeEEEecChhHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-----~G~~v~~G~~~~~ 122 (546)
++ ++|||+++|++ .++.+++|++++|+ +|+++.+|++++.
T Consensus 197 ~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 197 RS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred hc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 76 58999999996 78999999999998 5999999999875
No 221
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.6e-20 Score=184.33 Aligned_cols=115 Identities=27% Similarity=0.341 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.++|.+..+...+ ..++.||||||||++||++|+++|++|+|||||+|||+.++.++.+.|+++++ ++
T Consensus 122 ~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~ 199 (261)
T PRK14263 122 LGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DY 199 (261)
T ss_pred HHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 34678889999998643322222 25567999999999999999999999999999999999999999999999964 79
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe--------CCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLS--------GGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~--------~G~~v~~G~~~~~~ 123 (546)
|+|+++|++ .++.+++|++++|+ +|+++..|+++++.
T Consensus 200 tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 200 TIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred eEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999996 67889999999996 89999999988653
No 222
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.7e-20 Score=182.69 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
++.++++++.++|.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|.|
T Consensus 121 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t 198 (251)
T PRK14249 121 DEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYT 198 (251)
T ss_pred HHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCE
Confidence 455677788888753211111 22456799999999999999999999999999999999999999999999995 5899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 199 ilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 199 IAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999995 788899999999999999999998765
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-20 Score=184.96 Aligned_cols=116 Identities=29% Similarity=0.414 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.++++.++++.+||.+..++... ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~ 212 (276)
T PRK14271 135 EFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-R 212 (276)
T ss_pred HHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 334556788899999753322221 24567999999999999999999999999999999999999999999999976 4
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 213 ~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 213 LTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999995 7889999999999999999999988753
No 224
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=5.5e-20 Score=184.30 Aligned_cols=108 Identities=26% Similarity=0.365 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~t 86 (546)
+++.++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred HHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 45788999999998887754 569999999999999999999999999999999999999999999999875 899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
||+++|++ .++.+.+|++++|++ +++..|+++++
T Consensus 174 iiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 174 VLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred EEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999996 788899999999965 78999988765
No 225
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.3e-20 Score=182.77 Aligned_cols=109 Identities=28% Similarity=0.407 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.++++++.+++.. ..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 195 (251)
T PRK14251 121 DQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH 195 (251)
T ss_pred HHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc
Confidence 456788899999842 2333 4567999999999999999999999999999999999999999999999965
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 196 -~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 196 -QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred -CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 68999999996 678899999999999999999988765
No 226
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=6.6e-20 Score=201.31 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.+||.+.. ++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (500)
T TIGR02633 116 AMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190 (500)
T ss_pred HHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3456788999999998654 4434 569999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
|.|||+++|++ .++.+++|++++|++|+++..|++++
T Consensus 191 g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 191 GVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999995 78889999999999999999988764
No 227
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.8e-20 Score=173.32 Aligned_cols=113 Identities=32% Similarity=0.476 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLR 78 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~~L~ 78 (546)
+..+++++.+...++.+.+.+- .+.|||||||||.+||.|++ ++++||||||||.||...+..++++.+
T Consensus 111 e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 111 EDERIAAQALAATDLSGLAGRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred hhHHHHHHHHHHcChhhhhccc-----hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 4556788999999999998774 36799999999999999975 446999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+++++|..|+++.||. .-.-.++|||++|++||++..|+++++.
T Consensus 186 ~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 186 QLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 9999999999999995 6788999999999999999999999876
No 228
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.5e-20 Score=184.42 Aligned_cols=110 Identities=27% Similarity=0.454 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++.+++. +..|+ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 128 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 202 (269)
T PRK14259 128 DELVERSLRKAAVWDECKDKLNE-----SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK 202 (269)
T ss_pred HHHHHHHHHHhCCcchhhhhhCC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 45667788888874 23344 4567999999999999999999999999999999999999999999999965
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeC-----------CeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSG-----------GKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~-----------G~~v~~G~~~~~~ 123 (546)
+.|||+++|++ .++.+++|++++|++ |+++++|+++++.
T Consensus 203 -~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 203 -NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred -CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 68999999996 789999999999996 6789999988764
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=7.7e-20 Score=200.74 Aligned_cols=109 Identities=26% Similarity=0.408 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
.+++++++++.++|.+ ..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 453 (500)
T TIGR02633 379 ELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453 (500)
T ss_pred HHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence 4567889999999964 567755 4699999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
.|||+++|++ .++.+++|++++|++|+++..++.+
T Consensus 454 ~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 454 VAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999996 7899999999999999999877554
No 230
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=181.77 Aligned_cols=114 Identities=25% Similarity=0.362 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++.++++++.++|.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus 122 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~ 199 (253)
T PRK14261 122 LDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EY 199 (253)
T ss_pred HHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-Cc
Confidence 3456778888888743111111 224567999999999999999999999999999999999999999999999976 58
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus 200 tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 200 TVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred eEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999995 678899999999999999999998765
No 231
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=181.30 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++++++++.+||.+...... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus 119 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ 196 (250)
T PRK14266 119 IEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DY 196 (250)
T ss_pred HHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 4566788899999854221111 224567999999999999999999999999999999999999999999999965 79
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|||+++|++ .++.+.+|++++|++|++++.|++++.
T Consensus 197 tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 197 TIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred eEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 999999996 789999999999999999999998865
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=183.85 Aligned_cols=109 Identities=29% Similarity=0.405 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 8 TLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++.++.+++. +..++ .+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 209 (274)
T PRK14265 136 ELVEDSLRRAAIWEEVKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE- 209 (274)
T ss_pred HHHHHHHHHcccchhhHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-
Confidence 4456677887774 23333 4567999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe---------CCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLS---------GGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~~v~~G~~~~~~ 123 (546)
++|||+++|++ .++.+++|++++|+ +|+++..|+++++.
T Consensus 210 ~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 210 QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 68999999996 78999999999998 89999999998763
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=8.1e-20 Score=179.11 Aligned_cols=107 Identities=34% Similarity=0.510 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.+++.++.+++.+..++... ...+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 456678888899877665431 11346899999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
++ .|||+++|++ ..+ +++|++++|++|++++.|
T Consensus 188 ~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 188 GD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 65 8999999996 454 799999999999998764
No 234
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-19 Score=180.75 Aligned_cols=109 Identities=26% Similarity=0.392 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++++.+.++.+++. +..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 122 ~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 122 DEAVETSLKQAAIWDEVKDHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred HHHHHHHHHHcCCccchhhHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence 34566777888764 22333 4567999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+.|||+++|++ .++.+.+|++++|++|+++..|++.+.
T Consensus 197 -~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 197 -QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred -CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 48999999996 678899999999999999999988765
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=199.47 Aligned_cols=108 Identities=25% Similarity=0.349 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (501)
T PRK11288 116 LLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190 (501)
T ss_pred HHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 44567889999999987777654 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
+|||+++|++ .++.+++|++++|++|+++..++
T Consensus 191 ~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 191 RVILYVSHRM-EEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 9999999996 78889999999999999987665
No 236
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4e-20 Score=181.13 Aligned_cols=112 Identities=28% Similarity=0.431 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~ 85 (546)
....+++++.||++|..++ ++..|||||||||+|||||++.|++|++|||.+.||-....+++-.|++|+++ +.
T Consensus 106 ~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 4567889999999999988 56789999999999999999999999999999999999999999999999975 78
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.|+.++|.+ .|+.+++|+|++|.+|++..+|+.+++.+
T Consensus 181 PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 181 PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999995 89999999999999999999999998653
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=180.72 Aligned_cols=112 Identities=26% Similarity=0.483 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++++.+++.+ ..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 125 ~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (257)
T PRK14246 125 EIKKIVEECLRKVGLWKEVYDRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199 (257)
T ss_pred HHHHHHHHHHHHcCCCccchhhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 44567889999999964 3344 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ +.|||+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus 200 ~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 200 KN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred hc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 65 69999999995 6788999999999999999999988653
No 238
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-20 Score=173.68 Aligned_cols=115 Identities=27% Similarity=0.427 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
+|.+..+++.++.|+|++..|+.+ .+||||||||.-||+.++++.+.++||||.++||-.++.++|+.|+++++
T Consensus 110 ~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e 184 (252)
T COG4604 110 KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184 (252)
T ss_pred hHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH
Confidence 456788999999999999999855 57999999999999999999999999999999999999999999999997
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
-|+||+++.||. ..+-.++|+|+-|++|+++..|+++++.+
T Consensus 185 l~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 185 LGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred hCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 499999999994 67888999999999999999999998753
No 239
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=182.09 Aligned_cols=110 Identities=27% Similarity=0.411 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++.+++.+ ..++ .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 125 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 199 (264)
T PRK14243 125 DELVERSLRQAALWDEVKDKLKQ-----SGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199 (264)
T ss_pred HHHHHHHHHHhCchhhHHHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 455677788888743 2333 4567999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEe---------CCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLS---------GGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~~v~~G~~~~~~ 123 (546)
++|||+++|++ .++.+++|++++|+ +|+++..|+++++.
T Consensus 200 -~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 200 -QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred -CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 58999999995 78999999999998 89999999988763
No 240
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=3e-18 Score=196.65 Aligned_cols=103 Identities=33% Similarity=0.532 Sum_probs=93.2
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009019 18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
.|.+-.||.+|+..+. ||||||||++|||+|+.+|+||+||||||+||+.+...|.+.|++.. +|+|.|+++|+. +.
T Consensus 474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRL-St 550 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRL-ST 550 (1228)
T ss_pred hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeeh-hh
Confidence 4667789999985554 99999999999999999999999999999999999999999998876 478999999995 66
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 98 VFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 98 i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+ +|+|+++++|++|..|+++++.+
T Consensus 551 Irn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 551 IRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 766 99999999999999999999875
No 241
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=177.72 Aligned_cols=119 Identities=29% Similarity=0.403 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.++-+++.+...+.|+|+...+.. +|.||-|||.|+.+|.+|+++|++|||||||-|||..++..+.+.|++..
T Consensus 129 pd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n 203 (325)
T COG4586 129 PDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203 (325)
T ss_pred CHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHH
Confidence 4566788999999999999877764 47799999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009019 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 126 (546)
+ ++.||+.|||. ..++.++||||+++++|+++|+|+.+++.+-|
T Consensus 204 ~~~~aTVllTTH~-~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 204 EERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HhhCceEEEEecc-hhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 6 68999999999 58999999999999999999999999887654
No 242
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=182.87 Aligned_cols=109 Identities=23% Similarity=0.419 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.+.+.++.+++. +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 141 ~~~~~~~l~~~~~~~~l~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 141 DEIVEKSLRGAAIWDELKDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred HHHHHHHHHHcCCcchHHHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 34456667777542 23333 4567999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 216 -~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 216 -DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred -CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 69999999996 678899999999999999999998764
No 243
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=2e-19 Score=177.50 Aligned_cols=100 Identities=28% Similarity=0.379 Sum_probs=89.6
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 11 ERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 11 ~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
.+.++.+||.+ ..++ ++..||||||||++||++|+.+| ++++|||||+|||+.++.++.+.|++++++|.|+
T Consensus 118 ~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 46789999975 4566 44679999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEE------eCCeEEEec
Q 009019 88 IASIHQPSSEVFELFDRLYLL------SGGKTVYFG 117 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G 117 (546)
|+++|++ +++ +.+|++++| ++|+++++|
T Consensus 193 i~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999996 455 689999999 999999876
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-19 Score=178.71 Aligned_cols=105 Identities=32% Similarity=0.482 Sum_probs=89.6
Q ss_pred HHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009019 11 ERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88 (546)
Q Consensus 11 ~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi 88 (546)
++.++.+ ++++..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||
T Consensus 118 ~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii 191 (234)
T cd03251 118 HEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTF 191 (234)
T ss_pred HHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 3444444 45544444 4567999999999999999999999999999999999999999999999975 89999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 89 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 89 ~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+++|++ .++.. +|++++|++|+++..|++++..
T Consensus 192 ~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 192 VIAHRL-STIEN-ADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred EEecCH-HHHhh-CCEEEEecCCeEeeeCCHHHHH
Confidence 999997 56654 9999999999999999887654
No 245
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.81 E-value=1.6e-19 Score=177.18 Aligned_cols=103 Identities=32% Similarity=0.537 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
++..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 116 QEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 344567899999999988777744 57999999999999999999999999999999999999999999999986
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
.|+|||+++|++ . +.+.+|++++|++|++
T Consensus 191 ~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 191 QGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred cCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 589999999996 3 5689999999999986
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-19 Score=178.20 Aligned_cols=112 Identities=29% Similarity=0.377 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 9 LVERTIIEMGLQDCADTVI------GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~i------g~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+++.++.+++.+..+... -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+++.|++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~- 186 (229)
T cd03254 108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM- 186 (229)
T ss_pred HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 3445555555544333211 112457899999999999999999999999999999999999999999999996
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ .++ +.+|++++|++|++++.|+.++..
T Consensus 187 ~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 187 KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 589999999996 556 459999999999999999877653
No 247
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=1.4e-19 Score=202.40 Aligned_cols=113 Identities=27% Similarity=0.435 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++++++..++++ -.||.+|+. ...||||||||++|||+|+++|+||+||||||+||+.+..++.+.|+++
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 45566666665543 458889864 4569999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +++|+|+++|++ +..+.+|+|++|++|+++..|+.+++.+
T Consensus 532 ~-~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 532 S-RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred h-CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 6 479999999997 3467799999999999999999887653
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=2.2e-19 Score=178.27 Aligned_cols=91 Identities=32% Similarity=0.474 Sum_probs=83.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++ +|+|||+++|++ +++. .+|++++|++
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~ 212 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQN 212 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEEC
Confidence 456799999999999999999999999999999999999999999999997 789999999996 5665 8999999999
Q ss_pred CeEEEecChhHHHH
Q 009019 111 GKTVYFGETSAAFE 124 (546)
Q Consensus 111 G~~v~~G~~~~~~~ 124 (546)
|++++.|+.++..+
T Consensus 213 G~i~~~~~~~~~~~ 226 (238)
T cd03249 213 GQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCCHHHHhh
Confidence 99999998876544
No 249
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=1.7e-19 Score=174.65 Aligned_cols=92 Identities=33% Similarity=0.461 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEeCC
Q 009019 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGG 111 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~-~~D~v~lL~~G 111 (546)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.+ .+|++++|++|
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDG 181 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999988889999999996 56766 79999999999
Q ss_pred eEEEecChhHHHHHH
Q 009019 112 KTVYFGETSAAFEFF 126 (546)
Q Consensus 112 ~~v~~G~~~~~~~~f 126 (546)
+++..|+.+ +.+.+
T Consensus 182 ~i~~~~~~~-~~~~~ 195 (200)
T cd03217 182 RIVKSGDKE-LALEI 195 (200)
T ss_pred EEEEEccHH-HHhhh
Confidence 999999554 44444
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=183.18 Aligned_cols=110 Identities=28% Similarity=0.426 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 6 KRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+++++++++.+||.+ ..++ .+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++
T Consensus 153 ~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 153 IDERVEESLRRAALWDEVKDQLDS-----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHHHHHHcCCCchhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 3456888999999853 3444 446799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEecChhHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVYFGETSAA 122 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~~v~~G~~~~~ 122 (546)
++ .|||+++|++ .++.+++|+++ +|++|+++..|++++.
T Consensus 228 ~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 228 EE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred cC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 74 8999999995 78889999975 6799999999988764
No 251
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=184.38 Aligned_cols=113 Identities=27% Similarity=0.466 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
++.++++++.++|.+..+... +..++.||||||||++||++|+++|+||+|||||+|||+.++..+.+.|++++++ .|
T Consensus 174 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~t 251 (305)
T PRK14264 174 DELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YT 251 (305)
T ss_pred HHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CE
Confidence 466788999998853222222 2245789999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEecCCchHHHhhcCeE-EEEeCCeEEEecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRL-YLLSGGKTVYFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v-~lL~~G~~v~~G~~~~~ 122 (546)
||+++|++ .++.+++|++ ++|++|+++..|++++.
T Consensus 252 iiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 252 VVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 99999996 6788999997 57899999999998765
No 252
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.8e-19 Score=174.57 Aligned_cols=109 Identities=31% Similarity=0.438 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..+++..+++.+|+.+.+|+..+ .||-||||||-|||||+.+|.+||||||++|||..++..+++.|.+++..
T Consensus 146 ~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 146 AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 4556788999999999999999776 59999999999999999999999999999999999999999999999874
Q ss_pred --CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 84 --GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 84 --g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
+.++|+++|++ +|+...|++++++++|+++++|-
T Consensus 221 ~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 221 PGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 88999999996 89999999999999999999883
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=196.56 Aligned_cols=109 Identities=28% Similarity=0.430 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 6 KRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
.++.++++++.+++. +..|+.+ ..|||||||||.||++++.+|+||+|||||+|||+.++..+++.|++++++|
T Consensus 367 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~ 441 (491)
T PRK10982 367 MKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441 (491)
T ss_pred HHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence 345678899999995 4566654 5699999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~ 120 (546)
.|||+++|++ .++.+++|++++|++|+++..++++
T Consensus 442 ~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 442 KGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999995 7899999999999999999877653
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=2.6e-19 Score=181.61 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQDCADTVIGN------WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~------~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.+.+.++.+||.+..++..+. +....||||||||+++||+|+.+|+||+|||||+|||+.+...+.+.|+++.
T Consensus 106 ~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 106 EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4567788899998766654321 1234599999999999999999999999999999999999999999999885
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+|+|||+++|++ ..+. .+|+|++|++|++++.|+++++.+
T Consensus 186 -~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 186 -ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 489999999996 5665 599999999999999999998754
No 255
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.8e-19 Score=190.36 Aligned_cols=114 Identities=31% Similarity=0.458 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+.++++.+||++.. ||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 35677788888887643 445765 5678999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
-++ |+|+|++||+.. . .+.||+|++|++|+++..|.++++.+
T Consensus 520 ~~~-~kTll~vTHrL~-~-le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 520 HAE-GKTLLMVTHRLR-G-LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Hhc-CCeEEEEecccc-c-HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 775 799999999964 3 57899999999999999999987654
No 256
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=2.3e-19 Score=164.42 Aligned_cols=105 Identities=31% Similarity=0.454 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR- 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~- 82 (546)
.+.++...+.++.+||.+..+. ++.+|||||+|||+|||+++.+|+|||.||||.+||..+..+|.++|-.+.+
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre 195 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195 (228)
T ss_pred ccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence 3445668889999999887766 6778999999999999999999999999999999999999999999999986
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~ 115 (546)
.|.|.|++|||| .+...|||.+-|..|+++.
T Consensus 196 ~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 196 RGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 699999999997 5778899999999999864
No 257
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.80 E-value=3.5e-19 Score=172.75 Aligned_cols=97 Identities=36% Similarity=0.487 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 184 (206)
T TIGR03608 110 EKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184 (206)
T ss_pred HHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC
Confidence 44567889999999988888755 4699999999999999999999999999999999999999999999998789
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
.|+|+++|++ . ..+.+|++++|
T Consensus 185 ~tii~~sh~~-~-~~~~~d~i~~l 206 (206)
T TIGR03608 185 KTIIIVTHDP-E-VAKQADRVIEL 206 (206)
T ss_pred CEEEEEeCCH-H-HHhhcCEEEeC
Confidence 9999999997 3 45789999875
No 258
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.80 E-value=4.6e-19 Score=198.08 Aligned_cols=114 Identities=30% Similarity=0.384 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..|+.+ -.||.+|+. .+.||||||||++|||+|+++|+||+||||||+||+.+...+++.|++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 456777777777543 358888863 467999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+ ++|+|+++|++ +..+.+|+|++|++|+++..|+.++..+
T Consensus 526 ~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 526 LQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 854 69999999997 4578899999999999999999987643
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.4e-19 Score=177.43 Aligned_cols=109 Identities=26% Similarity=0.362 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++.+++. +..++ ....||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 209 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGD-----LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 45677788888874 22333 3457999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++|||+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 210 -~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 210 -KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred -CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 68999999995 788899999999999999999998764
No 260
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.80 E-value=3.8e-19 Score=202.42 Aligned_cols=112 Identities=30% Similarity=0.409 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
.+++.++++..|+.+. .||.+|+. ...||||||||++|||+|+++|+||+||||||+||+.+..++.+.|++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 3456777777777643 47888763 467999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+ ++|+|+++|++ +..+.+|+|++|++|+++..|+.+++.+
T Consensus 634 ~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 634 L---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred h---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 7 57999999997 3467799999999999999999987653
No 261
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=6.3e-19 Score=176.10 Aligned_cols=107 Identities=22% Similarity=0.343 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009019 9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV 87 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv 87 (546)
.++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 95 ~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 169 (246)
T cd03237 95 FKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169 (246)
T ss_pred HHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 4678899999988777755 46999999999999999999999999999999999999999999999986 58999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE--EecChhH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA 121 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v--~~G~~~~ 121 (546)
|+++|++ .++..++|++++|+++..+ ..+++.+
T Consensus 170 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 170 FVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred EEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999995 7888899999999765443 3345544
No 262
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.6e-19 Score=171.24 Aligned_cols=84 Identities=52% Similarity=0.937 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC-Ce
Q 009019 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GK 112 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~ 112 (546)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 69999999999999999999999999999999999999999999999888999999999974357889999999998 99
Q ss_pred EEEec
Q 009019 113 TVYFG 117 (546)
Q Consensus 113 ~v~~G 117 (546)
+++.|
T Consensus 188 i~~~g 192 (192)
T cd03232 188 TVYFG 192 (192)
T ss_pred EEeCC
Confidence 99876
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=4.5e-19 Score=170.89 Aligned_cols=84 Identities=68% Similarity=1.094 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 69999999999999999999999999999999999999999999999878999999999975578889999999999999
Q ss_pred EEec
Q 009019 114 VYFG 117 (546)
Q Consensus 114 v~~G 117 (546)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8765
No 264
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.1e-19 Score=174.74 Aligned_cols=90 Identities=37% Similarity=0.521 Sum_probs=82.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
.++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |.|||+++|++ .++. .+|++++|++
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~ 210 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKD 210 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEEC
Confidence 3568999999999999999999999999999999999999999999999987 99999999996 5664 5999999999
Q ss_pred CeEEEecChhHHH
Q 009019 111 GKTVYFGETSAAF 123 (546)
Q Consensus 111 G~~v~~G~~~~~~ 123 (546)
|+++..|+.++..
T Consensus 211 g~i~~~~~~~~~~ 223 (236)
T cd03253 211 GRIVERGTHEELL 223 (236)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999877643
No 265
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.3e-19 Score=190.11 Aligned_cols=114 Identities=32% Similarity=0.465 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDC------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++.+.++++..||.+. .|+.+|+ ..++|||||+|||++||+|+++++++++||||++||..+...|.+.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 4667778888887653 3677775 66789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+++ +|+++++|++ +...-+|+|++|++|+++..|.++++.+
T Consensus 503 ~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 503 AKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 986 9999999996 5678899999999999999999988643
No 266
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=6.2e-19 Score=196.69 Aligned_cols=114 Identities=29% Similarity=0.486 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDC------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++.++++++..++++. .||.+|+ ....||||||||++|||+++++|++|+|||||++||+.+..++.+.|+++
T Consensus 443 ~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 443 DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567888999998754 4688876 45679999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +|+|+|+++|++ +.+ ..+|+|++|++|+++..|+.+++.+
T Consensus 522 ~-~~~tviiitHr~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 522 A-QNKTVLMITHRL-TGL-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred c-CCCEEEEEecCh-hHH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 6 479999999997 344 6699999999999999999887653
No 267
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.79 E-value=8.1e-19 Score=171.58 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=95.3
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 009019 12 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91 (546)
Q Consensus 12 ~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~ 91 (546)
.+.+.++|++..|+.+ +.+|||||||+++|++|+.+|++++|||||+++|+.++..+.+.+.+..+ ++|+|+++
T Consensus 87 ~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs 160 (213)
T PRK15177 87 FCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT 160 (213)
T ss_pred HHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence 3445678887777755 46999999999999999999999999999999999999999998865443 36899999
Q ss_pred cCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009019 92 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128 (546)
Q Consensus 92 H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 128 (546)
|++ .++..++|++++|++|++++.|+.+++.++++.
T Consensus 161 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 161 HNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred CCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 996 678889999999999999999999998776544
No 268
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.79 E-value=6.8e-19 Score=195.20 Aligned_cols=98 Identities=34% Similarity=0.602 Sum_probs=88.6
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009019 23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
.||.+|+ ....||||||||++|||+++++|++|+|||||+|||+.++.++.+.|+++..+|+|+|+++|++ + ..+.+
T Consensus 444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~-~-~~~~~ 520 (544)
T TIGR01842 444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP-S-LLGCV 520 (544)
T ss_pred cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH-H-HHHhC
Confidence 4677765 4567999999999999999999999999999999999999999999999976789999999997 3 45789
Q ss_pred CeEEEEeCCeEEEecChhHHH
Q 009019 103 DRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 103 D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|++++|++|++++.|+.++..
T Consensus 521 d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 521 DKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999988754
No 269
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=1.1e-18 Score=195.59 Aligned_cols=113 Identities=21% Similarity=0.323 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..|+.+ -.||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+..++.+.|++
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 356778888888764 34777876 4457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+.+ ++|+|+++|++ +....+|+|++|++|+++..|+.+++.
T Consensus 522 ~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 522 VRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 865 59999999997 456779999999999999999999865
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=1.1e-18 Score=175.40 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=82.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
..+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++ .++.. +|++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999985 489999999997 45654 999999999
Q ss_pred CeEEEecChhHHH
Q 009019 111 GKTVYFGETSAAF 123 (546)
Q Consensus 111 G~~v~~G~~~~~~ 123 (546)
|+++..|++++..
T Consensus 230 G~i~~~g~~~~~~ 242 (257)
T cd03288 230 GILVECDTPENLL 242 (257)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988654
No 271
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=7.5e-19 Score=170.40 Aligned_cols=89 Identities=40% Similarity=0.705 Sum_probs=80.0
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEE
Q 009019 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 29 ~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+++|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 3355679999999999999999999999999999999999999999999999875 678777777655788999999999
Q ss_pred EeCCeEEEec
Q 009019 108 LSGGKTVYFG 117 (546)
Q Consensus 108 L~~G~~v~~G 117 (546)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
No 272
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.2e-18 Score=174.73 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~---P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+++.++++.+||.+ ..++. ...||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HHHHHHHHHcCCchhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 45677899999986 45554 457999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCh
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGET 119 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~ 119 (546)
|.|||+++|++ ..+ +.+|+++.| ++|++++.|++
T Consensus 222 g~tvIiitH~~-~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 222 GNTVVVIEHNL-DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999996 444 679999999 89999999974
No 273
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=9e-19 Score=200.14 Aligned_cols=112 Identities=29% Similarity=0.417 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++.++++..|+.+ -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+..++.+.|++
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 345666777776654 35788876 3467999999999999999999999999999999999999999999986
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.++|+|+++|++ + ....+|+|++|++|+++..|+.+++.+
T Consensus 661 ---~~~T~IiitHrl-~-~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 661 ---RGCTCIIVAHRL-S-TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ---cCCEEEEEecCH-H-HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 479999999997 3 456799999999999999999998754
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=9.1e-19 Score=164.09 Aligned_cols=81 Identities=40% Similarity=0.519 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
+||||||||+++|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|+++++++|++
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRV 160 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 3999999999999999999999999999999999999999999999987899999999995 678899999999999998
Q ss_pred EE
Q 009019 114 VY 115 (546)
Q Consensus 114 v~ 115 (546)
++
T Consensus 161 ~~ 162 (163)
T cd03216 161 VG 162 (163)
T ss_pred Ee
Confidence 75
No 275
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=9.3e-19 Score=199.50 Aligned_cols=114 Identities=30% Similarity=0.497 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++.++++..|+.+ -.||.+|+ ....||||||||++|||+|+.+|++++||||||+||+.+..++.+.|++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 345566677666543 45788886 3567999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 647 ~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 647 WLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 864 799999999973 468899999999999999999988765
No 276
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.4e-18 Score=164.64 Aligned_cols=99 Identities=27% Similarity=0.338 Sum_probs=85.3
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 11 ERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 11 ~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~--P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
.+.++.++|.. ..++. ++.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|++++++|+||
T Consensus 68 ~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv 142 (176)
T cd03238 68 LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142 (176)
T ss_pred HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 35788899975 35654 457999999999999999999 99999999999999999999999999998789999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
|+++|++ .++ +.+|++++|.+|+..+.
T Consensus 143 IivSH~~-~~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 143 ILIEHNL-DVL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred EEEeCCH-HHH-HhCCEEEEECCCCCCCC
Confidence 9999996 454 68999999976554333
No 277
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.7e-18 Score=161.90 Aligned_cols=119 Identities=29% Similarity=0.412 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++|.++++++.+.+..+||++..++.| .+|||||||||.|||+|+.+|++|+||||.+.||.-+++++..+|-++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 468899999999999999999888754 679999999999999999999999999999999999999999999998
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChhHHHHH
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF 125 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~~~~~~ 125 (546)
++ .|+.++++||+ .+|..-+++++++|+ .|+++..=+++=...|
T Consensus 179 w~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 179 WQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 86 69999999999 588889999999998 5899988777644443
No 278
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=1e-18 Score=194.69 Aligned_cols=102 Identities=34% Similarity=0.547 Sum_probs=91.2
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009019 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
|.+-.||.+|+ ....||||||||++|||+++.+|+||+||||||.||+.+...+.+.++++. +|+|+++++|++ +.+
T Consensus 451 lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRl-sti 527 (567)
T COG1132 451 LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRL-STI 527 (567)
T ss_pred CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccH-hHH
Confidence 34467999994 556799999999999999999999999999999999999999999999887 568999999997 445
Q ss_pred HhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 99 FELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ +|+|++|++|+++..|+++++..
T Consensus 528 ~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 528 KN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred Hh-CCEEEEEECCEEEEecCHHHHHH
Confidence 44 99999999999999999998765
No 279
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=1.1e-18 Score=175.07 Aligned_cols=106 Identities=27% Similarity=0.386 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.++.++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 115 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~ 189 (255)
T cd03236 115 DERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189 (255)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 33567889999999988777644 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
+|||+++|++ .++.+++|++++|+ |++.+.|
T Consensus 190 ~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 190 NYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 9999999995 67888999999995 5566544
No 280
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=167.85 Aligned_cols=109 Identities=28% Similarity=0.491 Sum_probs=99.8
Q ss_pred HHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009019 10 VERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV 87 (546)
Q Consensus 10 v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tv 87 (546)
++++.+.+- |.+.++++-|+ |||||||.++|||+|+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||
T Consensus 116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 777888874 88888888775 9999999999999999999999999999999999999999999999975 7899
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+++.+. ...+.+++||.++|.+|+++++|+.+++.+
T Consensus 191 lLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 191 LLVEQN-ARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999988 578999999999999999999999988643
No 281
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.78 E-value=6.2e-19 Score=198.14 Aligned_cols=102 Identities=34% Similarity=0.508 Sum_probs=92.6
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009019 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
+..-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.+ ..
T Consensus 595 lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl--~t 670 (709)
T COG2274 595 LPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRL--ST 670 (709)
T ss_pred ccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccc--hH
Confidence 44456888886 5568999999999999999999999999999999999999999999999975 59999999997 46
Q ss_pred HhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 99 FELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+.+|+|++|++|+++.+|+.+++.+
T Consensus 671 i~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 671 IRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hhhccEEEEccCCceeccCCHHHHHH
Confidence 89999999999999999999998765
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=1.2e-18 Score=170.84 Aligned_cols=107 Identities=23% Similarity=0.400 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQDCADT-------VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~-------~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.+.++.+++.+..++ .. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 107 EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 345666777777654432 11 2256789999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
++ +.|||+++|++ .++. .+|++++|++|+++..|+
T Consensus 186 ~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 186 FK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 65 68999999996 5665 499999999999998876
No 283
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.78 E-value=1.3e-18 Score=193.91 Aligned_cols=113 Identities=34% Similarity=0.456 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..||++ -.||.+|+. .+.||||||||++|||+++.+|+|++||||||+||+.+..++++.|++
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 456777888887753 357888864 467999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ +++|+|++||++ +..+.+|+|++|++|+++..|+.++..
T Consensus 515 ~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 515 LM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred Hh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 85 469999999997 567889999999999999999998764
No 284
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=1.3e-18 Score=198.70 Aligned_cols=112 Identities=26% Similarity=0.369 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.++++..|+.+ -.||.+|+ ....||||||||++|||+++++|+||+||||||+||+.+..++++.|+++
T Consensus 579 ~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 579 DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 45666677666643 35788886 44679999999999999999999999999999999999999999999985
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+|+|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 658 --~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 658 --QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred --cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 4799999999973 568899999999999999999987654
No 285
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.7e-18 Score=197.26 Aligned_cols=113 Identities=30% Similarity=0.460 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++..|+.+ -.||.+|+ ....||||||||++|||+|+++|++|+|||||++||+.+..++.+.|+++
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 44556666666543 35788876 35689999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +|+|+|+++|++ +. .+.+|++++|++|+++..|+.+++.+
T Consensus 640 ~-~~~t~i~itH~~-~~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 640 C-RGRTVIIIAHRL-ST-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred h-CCCEEEEEeCCh-HH-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 5 579999999997 34 46799999999999999999887653
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=1.1e-18 Score=191.10 Aligned_cols=105 Identities=24% Similarity=0.401 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-
Q 009019 7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG- 84 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g- 84 (546)
+++++++++.+||.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 378 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~ 452 (490)
T PRK10938 378 QKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE 452 (490)
T ss_pred HHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 457889999999987 777755 4699999999999999999999999999999999999999999999998875
Q ss_pred CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEec
Q 009019 85 RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~-~~D~v~lL~~G~~v~~G 117 (546)
.|||+++|++ .++.+ ++|++++|++|+++..-
T Consensus 453 ~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 453 TQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 5799999996 67776 58999999999987654
No 287
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.77 E-value=1.4e-18 Score=168.20 Aligned_cols=96 Identities=29% Similarity=0.371 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
.++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 177 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 (201)
T ss_pred HHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 456788999999988777754 569999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEE
Q 009019 87 VIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL 108 (546)
+|+++|++ .+....+|+++++
T Consensus 178 iii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 178 VVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred EEEEecCc-hhhhhccceeEec
Confidence 99999997 5778899999887
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=1.2e-18 Score=169.00 Aligned_cols=96 Identities=28% Similarity=0.341 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++++++.+||++..|+.+ ..||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 107 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 107 DEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM 181 (204)
T ss_pred HHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 467889999999988777754 569999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCCchHHHhhcCeEEEE
Q 009019 87 VIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL 108 (546)
||+++|++ .++.++-+|++++
T Consensus 182 iii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 182 VILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred EEEEecCh-hhhccCCceEEec
Confidence 99999996 6777777788776
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.77 E-value=2e-18 Score=193.01 Aligned_cols=98 Identities=33% Similarity=0.446 Sum_probs=87.4
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009019 23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
.||.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. +|+|+|+++|++ +.+ +.+
T Consensus 461 ~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~ 536 (585)
T TIGR01192 461 YDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRL-STV-RNA 536 (585)
T ss_pred ccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcC
Confidence 4666765 456799999999999999999999999999999999999999999999885 489999999997 444 679
Q ss_pred CeEEEEeCCeEEEecChhHHHH
Q 009019 103 DRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 103 D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|++|++|+++..|+.++..+
T Consensus 537 d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 537 DLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999887643
No 290
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.3e-18 Score=164.62 Aligned_cols=78 Identities=40% Similarity=0.632 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999988899999999996 678889999999999974
No 291
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=2.4e-18 Score=191.85 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.++++++..++. +-.||.+|+ ....||||||||++|||+|+++|++++|||||+|||+.+..++.+.|+++
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4455666666654 335778876 45679999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +|+|+|+++|++ + ..+.+|++++|++|+++..|+.++..+
T Consensus 498 ~-~~~tii~itH~~-~-~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 498 G-EGRTVIISAHRL-S-ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred h-CCCEEEEEecch-h-HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 5 589999999997 3 457799999999999999999887643
No 292
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=2e-18 Score=168.77 Aligned_cols=98 Identities=23% Similarity=0.391 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
++.++++++.++|.+..++.+ ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred HHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 345678899999988777755 469999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
||+++|++ .++.+++|++++++.
T Consensus 190 iii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 190 ALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEecCh-hhhhhhcceEEEEee
Confidence 99999996 789999999999864
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.77 E-value=2.7e-18 Score=192.18 Aligned_cols=113 Identities=32% Similarity=0.430 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++.++++..|+++ -.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 344666677766543 35777876 3557999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+.+ ++|+|+++|++ +..+.+|+|++|++|+++..|+.++..
T Consensus 517 ~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 517 LMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred Hhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 854 79999999997 356889999999999999999988764
No 294
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.77 E-value=1.6e-18 Score=170.70 Aligned_cols=96 Identities=33% Similarity=0.465 Sum_probs=84.1
Q ss_pred HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 10 VERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 10 v~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+++.++.+ |+++..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+
T Consensus 129 ~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 202 (226)
T cd03248 129 AHSFISELASGYDTEVGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202 (226)
T ss_pred cHHHHHhccccccchhhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 46677777 777666554 467999999999999999999999999999999999999999999999876 6899
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
|+++|++ .++. .+|++++|++|++
T Consensus 203 i~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 203 LVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred EEEECCH-HHHH-hCCEEEEecCCcC
Confidence 9999997 5664 5999999999974
No 295
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=1.8e-18 Score=170.51 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
+++++++++.+||. ...++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35678899999995 456664 456999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecC
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 118 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~~G~ 118 (546)
.|||+++|++ .++ ..+|++++|. ++..+..|.
T Consensus 189 ~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 189 IAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 9999999996 566 4699999995 555555554
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.76 E-value=3.2e-18 Score=168.34 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+..+++.++++.+||.+ ..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 124 AARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 34567788999999975 34554 4579999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
|+|||+++|++ ..+.+++|+++.+.
T Consensus 199 g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 199 GAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999994 67778999998763
No 297
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=2.5e-18 Score=196.23 Aligned_cols=112 Identities=31% Similarity=0.470 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+.++++..++++ -.||.+|+ ....||||||||++|||+++++|+||+||||||+||+.+...+.+ ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~- 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR- 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence 456677788777654 35788886 346799999999999999999999999999999999999999888 22
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+++|+|+++|++ + ..+.+|+|++|++|+++..|+++++.+
T Consensus 661 -~~~~~TvIiItHrl-~-~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 661 -SRASRTVLLIAHRL-S-TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -ccCCCeEEEEeccH-H-HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 23689999999997 3 467799999999999999999988654
No 298
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.76 E-value=1.8e-18 Score=163.64 Aligned_cols=77 Identities=35% Similarity=0.600 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++ +.+|++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999988899999999996 455 68999999999974
No 299
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=1.6e-18 Score=165.23 Aligned_cols=78 Identities=32% Similarity=0.553 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.+++|++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999987789999999995 789999999999999974
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=2.7e-18 Score=163.10 Aligned_cols=83 Identities=31% Similarity=0.492 Sum_probs=76.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
+..||||||||++||++++.+|++++|||||+|||+.++..+++.|++++ +|.|||+++|++ .++ ..+|++++|++|
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g 172 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENG 172 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999996 489999999996 556 469999999999
Q ss_pred eEEEec
Q 009019 112 KTVYFG 117 (546)
Q Consensus 112 ~~v~~G 117 (546)
++++.|
T Consensus 173 ~i~~~~ 178 (178)
T cd03247 173 KIIMQG 178 (178)
T ss_pred EEEecC
Confidence 998765
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.5e-18 Score=164.86 Aligned_cols=85 Identities=38% Similarity=0.557 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..|+.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 177 (190)
T TIGR01166 103 EVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177 (190)
T ss_pred HHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 34567889999999988777754 5699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCC
Q 009019 85 RTVIASIHQP 94 (546)
Q Consensus 85 ~tvi~~~H~p 94 (546)
+|||+++|++
T Consensus 178 ~tili~sH~~ 187 (190)
T TIGR01166 178 MTVVISTHDV 187 (190)
T ss_pred CEEEEEeecc
Confidence 9999999996
No 302
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=3.2e-18 Score=166.35 Aligned_cols=86 Identities=24% Similarity=0.469 Sum_probs=78.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. +|.|+|+++|++ .++.. +|++++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~ 198 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDA 198 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEEC
Confidence 456899999999999999999999999999999999999999999999985 489999999996 55654 999999999
Q ss_pred CeEEEecCh
Q 009019 111 GKTVYFGET 119 (546)
Q Consensus 111 G~~v~~G~~ 119 (546)
|+++..|++
T Consensus 199 g~i~~~g~~ 207 (207)
T cd03369 199 GEVKEYDHP 207 (207)
T ss_pred CEEEecCCC
Confidence 999988863
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-18 Score=188.16 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+||.+.. +.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~ 203 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS 203 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence 46788999999997543 343 356999999999999999999999999999999999999999999864 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~~~ 123 (546)
|||+++|++ ..+.+++|++++|++|++ ++.|++++..
T Consensus 204 tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 204 TMIIISHDR-HFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCCH-HHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 999999995 788999999999999999 5889887654
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.75 E-value=5.5e-18 Score=191.36 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.++++.++++.+||++..|+.. +.||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 119 ~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~ 193 (648)
T PRK10535 119 KQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 455677899999999998888755 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|+|+++|++ ..+ +.+|++++|++|++++.|++++..
T Consensus 194 g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 194 GHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCH-HHH-HhCCEEEEEECCEEEeecCccccc
Confidence 99999999996 444 679999999999999999998764
No 305
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=5.8e-18 Score=188.99 Aligned_cols=113 Identities=31% Similarity=0.423 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..|+.+ -.||.+|+ ....||||||||+++||+++.+|++|+||||||+||+.++..+++.|++
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 356677777777653 24677775 3467999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+. +++|+|+++|++ +....+|+++.+++|+++..|+.++..
T Consensus 522 ~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 522 LM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred Hh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 85 479999999997 456789999999999999999988653
No 306
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.7e-18 Score=162.21 Aligned_cols=77 Identities=40% Similarity=0.605 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+.+|++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999887 89999999995 67888999999999885
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=2.6e-18 Score=197.19 Aligned_cols=103 Identities=35% Similarity=0.493 Sum_probs=94.6
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009019 18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
+|.+-.||.+|+ +..+||||||||++||||++.||+||+|||.||.||+.+...|.+.|.+.. .|+|.|++.|+++
T Consensus 1111 sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS-- 1186 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS-- 1186 (1228)
T ss_pred cCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--
Confidence 688889999997 445699999999999999999999999999999999999999999999986 4799999999974
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 98 VFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 98 i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+.+|.|+++++|++++.|+.+++.+
T Consensus 1187 TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 368899999999999999999998765
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.5e-18 Score=187.38 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+|+. +..|+.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.
T Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 486 (530)
T PRK15064 415 EQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG 486 (530)
T ss_pred HHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence 45678899999994 5677755 469999999999999999999999999999999999999999999987 35
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~ 123 (546)
|||+++|++ .++.+++|++++|++|+++ +.|++++..
T Consensus 487 tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 487 TLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999995 7889999999999999998 889887653
No 309
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.4e-18 Score=185.72 Aligned_cols=103 Identities=32% Similarity=0.554 Sum_probs=93.2
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009019 18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
++.+-.||.||. +.-.||||||||++|||||+.||.||||||.||.||+.+...|.+.|.++.++ +|||++.|.. +
T Consensus 589 ~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRL-S- 664 (716)
T KOG0058|consen 589 NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRL-S- 664 (716)
T ss_pred hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhh-h-
Confidence 577789999997 44469999999999999999999999999999999999999999999998765 9999999995 3
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 98 VFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 98 i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+.+|+|+++++|+++..|..+++.+
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 467899999999999999999887654
No 310
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.7e-18 Score=178.75 Aligned_cols=102 Identities=33% Similarity=0.490 Sum_probs=91.3
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009019 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
|++-.+|.+|++ .+.|||||||||++||+++.+|+|+++|||||.||+.+..++++.+.+ ...|+|+|++.|+. ..
T Consensus 473 l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~l 548 (591)
T KOG0057|consen 473 LPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DL 548 (591)
T ss_pred ccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hh
Confidence 445567789874 455999999999999999999999999999999999999999999999 34689999999994 56
Q ss_pred HhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 99 FELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
...||+|++|++|++...|+.+++..
T Consensus 549 l~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEEEEECCeeEEeccHHHHhh
Confidence 78999999999999999999998765
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=6.2e-18 Score=188.34 Aligned_cols=105 Identities=26% Similarity=0.363 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t 86 (546)
..++++++.+||.+..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 506 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT 506 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 35678999999998888755 46999999999999999999999999999999999999999999999987 4899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
||+++|++ .++..++|++++|++ ++...|..
T Consensus 507 viivsHD~-~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 507 ALVVDHDI-YMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEcC-cceeeeec
Confidence 99999995 788999999999965 77777753
No 312
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=8.4e-18 Score=163.59 Aligned_cols=95 Identities=28% Similarity=0.367 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+.++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++++++|+||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred HHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 45788999999987777654 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeC
Q 009019 88 IASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
|+++|++ .++.. |+++.+..
T Consensus 181 ii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 181 IAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred EEEeCCc-hhhcc--CcEEeecC
Confidence 9999996 56665 98887743
No 313
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.5e-17 Score=177.78 Aligned_cols=112 Identities=30% Similarity=0.421 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.++++.++|+.+|+....++.+|+ ||+||||.|.||++|..+++||+|||||+.|+...+..+.+.+++|.
T Consensus 118 d~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 118 DRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred CHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4567788899999999996558887775 99999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
++|.+||+++|. ..|++++||||.+|++|+.+..++.
T Consensus 193 ~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 193 AQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred hCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999 5899999999999999999998883
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=1.1e-17 Score=185.93 Aligned_cols=106 Identities=28% Similarity=0.407 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
.++++++++.+||.. .++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 456788999999954 56654 4699999999999999999999999999999999999999999999873 49
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~ 122 (546)
||+++|++ .++.+.+|+|++|++|+++ +.|+.++.
T Consensus 213 viiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 213 VVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 99999995 7889999999999999986 88987754
No 315
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=8.8e-18 Score=203.33 Aligned_cols=113 Identities=27% Similarity=0.438 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.++++++..++ .+-.||.||. ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 345556665544 4456999996 45679999999999999999999999999999999999999999999999
Q ss_pred H-hCCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EecChhHHH
Q 009019 81 S-RDGRTVIASIHQPSSEVFELFDRLYLLSG----GKTV-YFGETSAAF 123 (546)
Q Consensus 81 ~-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~----G~~v-~~G~~~~~~ 123 (546)
. .+|+|+|+++|++ + ..+.+|+|++|++ |+++ ..|+.+++.
T Consensus 1405 ~~~~~~TvIiIaHRl-s-ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1405 KDKADKTIITIAHRI-A-SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hccCCCEEEEEechH-H-HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 7 4689999999996 3 4678999999998 9955 899998764
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=2.2e-17 Score=168.08 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=80.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L-~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
....||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||+++|++ .++ ..+|++++|+
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~ 232 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILH 232 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEE
Confidence 34689999999999999999999999999999999999999999864 5664 478999999996 455 6899999999
Q ss_pred CCeEEEecChhHHH
Q 009019 110 GGKTVYFGETSAAF 123 (546)
Q Consensus 110 ~G~~v~~G~~~~~~ 123 (546)
+|++++.|+++++.
T Consensus 233 ~G~i~~~g~~~~~~ 246 (282)
T cd03291 233 EGSSYFYGTFSELQ 246 (282)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988754
No 317
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=1.1e-17 Score=158.61 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g-~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|||+++|++ .++.+++|++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999998765 9999999995 778889999999998766
Q ss_pred EEe--cChhH
Q 009019 114 VYF--GETSA 121 (546)
Q Consensus 114 v~~--G~~~~ 121 (546)
++. |++..
T Consensus 151 ~~~~~~~~~~ 160 (177)
T cd03222 151 VYGIASQPKG 160 (177)
T ss_pred cceeccCCcc
Confidence 655 65543
No 318
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=187.86 Aligned_cols=109 Identities=29% Similarity=0.426 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++.++++.+++. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ .|
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g- 478 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG- 478 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence 45678899999996 46777654 69999999999999999999999999999999999999999999988 34
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~ 124 (546)
|||+++|++ ..+.+++|++++|++|+++ +.|+.++..+
T Consensus 479 tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 479 ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999995 7889999999999999997 8899887543
No 319
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-17 Score=157.38 Aligned_cols=122 Identities=29% Similarity=0.498 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+-.+.+++.++.+++.+ ..++.+. .|+|||||||..|+..++.+|++.+||||-||||..+-..|-+.++.+...
T Consensus 118 ~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 118 EFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 44677888999999986 7777765 489999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEecChhHHHHHHHHcCCCC
Q 009019 84 GRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGETSAAFEFFAQAGFPC 133 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~--D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~ 133 (546)
|++++++||. .++.++. |++.+|.+|+|+..|.+ ++.+.++..||.|
T Consensus 194 ~~~~liITHy--~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 194 GRGVLIITHY--QRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCeEEEEecH--HHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 9999999998 4788887 99999999999999999 7888888888865
No 320
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.73 E-value=1.1e-17 Score=161.45 Aligned_cols=92 Identities=29% Similarity=0.390 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||++..++.+ ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 106 RTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred HHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 45788999999998877755 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEE
Q 009019 88 IASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~l 107 (546)
|+++|++.. -.+|+++.
T Consensus 181 i~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 181 LLTTHQDLG---LVEARELR 197 (198)
T ss_pred EEEEccccc---ccceEEee
Confidence 999999732 34566654
No 321
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=9.4e-18 Score=194.87 Aligned_cols=121 Identities=26% Similarity=0.445 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++.+.++.++.+++.+||.+.+|+.+| .+|||+|||+++|.+++.+|++++|||||+|+||.+++++.++++++.
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~ 745 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR 745 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 556788889999999999999999876 499999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 128 (546)
++|+.||+|+|. .+|...+|||+.+|.+|+....|++++++..|..
T Consensus 746 k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 746 KNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred hcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 988899999999 5899999999999999999999999999877643
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.9e-17 Score=186.52 Aligned_cols=106 Identities=25% Similarity=0.412 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+.+++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~ 197 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QG 197 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CC
Confidence 46788999999997 56777665 59999999999999999999999999999999999999999998876 46
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 121 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~ 121 (546)
|||+++|++ ..+.+++|++++|++|++. |.|+.+.
T Consensus 198 tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 198 TLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred eEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 999999995 7889999999999999996 6777664
No 323
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1.9e-17 Score=162.25 Aligned_cols=100 Identities=28% Similarity=0.382 Sum_probs=81.5
Q ss_pred HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHH
Q 009019 10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCL 80 (546)
Q Consensus 10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~--~L~~l 80 (546)
.+++++.++|.+..+ +..+ ..+..||||||||++||++|+.+|++|+|||||+|||+.++..+++ .++.+
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~ 188 (218)
T cd03290 110 YKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188 (218)
T ss_pred HHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH
Confidence 355666677654322 1222 2457899999999999999999999999999999999999999998 67777
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.++|.|+|+++|++ .++ ..+|++++|++|.
T Consensus 189 ~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 189 QDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred hcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 77789999999997 455 5799999999884
No 324
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=1.9e-17 Score=200.35 Aligned_cols=101 Identities=30% Similarity=0.525 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++.+++.+. .||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|+++
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 457777777776543 4777876 46789999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.+ +|+|+|+++|++ +.+ +.+|+|++|++|
T Consensus 626 ~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 626 KGNENRITIIIAHRL-STI-RYANTIFVLSNR 655 (1466)
T ss_pred hhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence 86 689999999997 444 789999999986
No 325
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=2.3e-17 Score=160.03 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=72.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
....||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++ ..+.. +|++++|+
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~ 201 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLD 201 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEe
Confidence 457899999999999999999999999999999999999999998 5677766789999999996 56666 99999999
Q ss_pred CCe
Q 009019 110 GGK 112 (546)
Q Consensus 110 ~G~ 112 (546)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 985
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.72 E-value=2.7e-17 Score=182.68 Aligned_cols=107 Identities=29% Similarity=0.422 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
.+++++++.+|+.. .++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeE
Confidence 45667788888853 45544 5699999999999999999999999999999999999999999998873 599
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 124 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~ 124 (546)
|+++|++ ..+...+|++++|++|+++ +.|+.++..+
T Consensus 212 IiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 212 VAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999995 7888999999999999976 7798876543
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.6e-17 Score=156.82 Aligned_cols=75 Identities=40% Similarity=0.704 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ++|+|+++|++ .++.. +|++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999964 79999999996 56766 99999999885
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=99.72 E-value=2.2e-17 Score=183.89 Aligned_cols=98 Identities=32% Similarity=0.457 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++++++.+||++..|+.++ +|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ |.|
T Consensus 190 ~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t 263 (590)
T PRK13409 190 RGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY 263 (590)
T ss_pred HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence 4678899999999988888664 6999999999999999999999999999999999999999999999988 999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCC
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
||+++|++ +++..++|++++|++|
T Consensus 264 vIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999995 7899999999999874
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=3.6e-17 Score=184.45 Aligned_cols=105 Identities=27% Similarity=0.439 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+.+++++++.+|+.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|
T Consensus 136 ~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~t 205 (635)
T PRK11147 136 ENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GS 205 (635)
T ss_pred HHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CE
Confidence 457888999999963 554 45699999999999999999999999999999999999999999999883 59
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA 122 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~ 122 (546)
||+++|++ ..+.+.+|+|++|++|+++ |.|+.++.
T Consensus 206 vlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 206 IIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99999995 7888999999999999997 56877653
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.72 E-value=4.5e-17 Score=180.80 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCcccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~--~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
++.+++.++.+++.+..+. ++. ....||||||||++|||+++.+|++|+||||||+||+.+...+.+.|.+..+ +
T Consensus 422 ~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 499 (547)
T PRK10522 422 PALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM 499 (547)
T ss_pred HHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4567888999998764432 221 1247999999999999999999999999999999999999999999987654 5
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
|+|+|+++|++ +..+.+|++++|++|+++..
T Consensus 500 ~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 500 GKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 89999999997 45788999999999999866
No 331
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=3.1e-17 Score=189.19 Aligned_cols=110 Identities=26% Similarity=0.367 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 6 KRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
..++++ .++.+||.+. .|+.+ ..|||||||||.||++|..+| ++++|||||+|||+..+.++.+.|+++++
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~ 539 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD 539 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh
Confidence 345554 6888899865 67755 469999999999999999997 99999999999999999999999999988
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
+|.|||+++|++ .++ ..+|+|++| ++|++++.|+++++.
T Consensus 540 ~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 540 LGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 899999999996 555 469999999 999999999998864
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.71 E-value=5.1e-17 Score=180.62 Aligned_cols=109 Identities=24% Similarity=0.291 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCcccccccc-cCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHhC
Q 009019 6 KRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRD 83 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~-~l~~~ 83 (546)
.++++++.++.+++.+..+..- |-.....||||||||++|||+++.+|++++|||||++||+.+..++.+.+. .+..+
T Consensus 441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 3456788899999876544321 222335799999999999999999999999999999999999999998664 56567
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
|+|+|+++|++ + ..+.+|+|++|++|+++..
T Consensus 521 ~~tiiiisH~~-~-~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDD-Q-YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccH-H-HHHhCCEEEEEECCEEEEe
Confidence 89999999997 3 5678999999999998754
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.4e-17 Score=149.14 Aligned_cols=115 Identities=32% Similarity=0.425 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
+.++...+.+++..++.. ++ +..++.+|||++||+.|||-|++.|+++|+||||.|||..-+.+++++++.|.. -
T Consensus 126 ~iR~~a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l 201 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred hHHHHHHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence 345667788998887532 22 236789999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.++++++|+ ..-+.-++||.++|.+|+++.+|-++++++
T Consensus 202 ~la~viVTHD-l~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 202 GLAVVIVTHD-LAVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred CceEEEEech-hHHHHHhhhcceeecCCCEecccccccccc
Confidence 8999999999 467777899999999999999998887643
No 334
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.71 E-value=2.5e-17 Score=172.98 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=100.2
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 009019 17 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 96 (546)
Q Consensus 17 lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~ 96 (546)
+.|.+-.||.||+ ...+||||||||+.+||+|-.+|.+++||||-|+||......+.+.|.++.++|.|+|+++|.|
T Consensus 456 l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP-- 532 (580)
T COG4618 456 LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP-- 532 (580)
T ss_pred HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--
Confidence 3577789999997 4567999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009019 97 EVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127 (546)
Q Consensus 97 ~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 127 (546)
.+....|+|++|++|++-.+|+.++++....
T Consensus 533 s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 533 SALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 4789999999999999999999999887653
No 335
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=6e-17 Score=183.75 Aligned_cols=109 Identities=26% Similarity=0.381 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++.++++.+||.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++. .|
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g- 675 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG- 675 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence 356788999999973 566644 579999999999999999999999999999999999999998888765 34
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~ 124 (546)
|||+++|++ ..+..++|++++|.+|+++ +.|+.++..+
T Consensus 676 tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 676 GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999995 7888999999999999998 7888776443
No 336
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=5.3e-17 Score=197.88 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++..+|.+ -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus 1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1339 ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 45666777766643 34777875 44569999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +++|+|+++|++ +. ...+|+|++|++|+++..|+++++.+
T Consensus 1418 ~-~~~TvI~IAHRl-~t-i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1418 F-KSCTMLVIAHRL-NT-IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred c-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 479999999996 34 45699999999999999999998753
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=8.4e-17 Score=182.57 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+++.++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ |.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 45566777778885 4455544 569999999999999999999999999999999999999999999887 67
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA 122 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~ 122 (546)
|||+++|+. ..+.+.+|++++|++|++. |.|+.++.
T Consensus 393 tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 393 TFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999994 7888999999999999996 67876643
No 338
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=8.9e-17 Score=196.38 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++..++. +-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++.
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 4456666666553 346788876 44579999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +|+|+|+++|++ +. ...+|+|++|++|+++..|+++++.+
T Consensus 1421 ~-~~~TvI~IAHRL-~t-I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1421 F-KSCTMLIIAHRL-NT-IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred C-CCCEEEEEeCCh-HH-HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5 479999999996 33 45699999999999999999998764
No 339
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=8.5e-17 Score=185.29 Aligned_cols=104 Identities=29% Similarity=0.382 Sum_probs=92.2
Q ss_pred HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009019 13 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89 (546)
Q Consensus 13 ~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~ 89 (546)
.+..+||... .++. +.+|||||+||+.||++|+.+| ++++|||||+|||+.++.++++.|++++++|.|||+
T Consensus 470 ~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3677788654 4654 4579999999999999999986 899999999999999999999999999988999999
Q ss_pred EecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009019 90 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 90 ~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
++|++ .++ ..+|++++| ++|++++.|+++++.
T Consensus 545 VeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 545 VEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99996 455 589999999 899999999998764
No 340
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=5.4e-17 Score=157.03 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
..++++++.+++.+..++.+ ..||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 46788999999987777654 4699999999999999999999999999999999999999999999998789999
Q ss_pred EEEecCCchHHHhhcCeEE
Q 009019 88 IASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~ 106 (546)
|+++|++. ....+|...
T Consensus 181 ii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 181 LLTSHQDL--PLNKADYEE 197 (200)
T ss_pred EEEeCCch--hccccchhh
Confidence 99999963 345566543
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=8e-17 Score=151.39 Aligned_cols=75 Identities=40% Similarity=0.599 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|+++|++ . ..+.+|++++|++|
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence 4679999999999999999999999999999999999999999999987 58999999997 3 45799999999865
No 342
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=6.4e-17 Score=151.35 Aligned_cols=112 Identities=24% Similarity=0.416 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+.+++++|+..||.+.+|...|. ||.||||++.||+.++++|++|+||||++|+--....+.-++|+.++..
T Consensus 123 ~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~- 196 (249)
T COG4674 123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK- 196 (249)
T ss_pred hHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-
Confidence 4567899999999999999998775 9999999999999999999999999999999999999999999999864
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++|+++.|| ...+.+++|+|.+|++|.+...|+.+++.
T Consensus 197 hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 197 HSILVVEHD-MGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ceEEEEecc-HHHHHHhhheeEEEeccceeecccHHHhh
Confidence 799999999 58999999999999999999999988763
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=8.2e-17 Score=147.80 Aligned_cols=77 Identities=32% Similarity=0.449 Sum_probs=71.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..+||+||+||++||++|+.+|+++++||||+|||+.++..+.+.|+++ ++|+++++|++ +++.+++|++++|++|
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g 143 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDG 143 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCC
Confidence 3459999999999999999999999999999999999999999999987 47999999995 7888999999999998
Q ss_pred e
Q 009019 112 K 112 (546)
Q Consensus 112 ~ 112 (546)
+
T Consensus 144 ~ 144 (144)
T cd03221 144 K 144 (144)
T ss_pred C
Confidence 5
No 344
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.2e-17 Score=165.74 Aligned_cols=102 Identities=36% Similarity=0.516 Sum_probs=92.0
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009019 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
|.+-.|+.||....+ |||||||||+|||+++.+|+||++||.||.||+.+..++...|++++ .|+|.+++.|..+ .
T Consensus 385 lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-t- 460 (497)
T COG5265 385 LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-T- 460 (497)
T ss_pred Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-h-
Confidence 566789999986655 89999999999999999999999999999999999999999999998 5789999999964 3
Q ss_pred HhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 99 FELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.--+|.|++|++|++++.|..++++.
T Consensus 461 i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 461 IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 45699999999999999999988764
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.69 E-value=1.7e-16 Score=176.33 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+++++++.+||.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | ||
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~v 493 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CA 493 (552)
T ss_pred HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eE
Confidence 4567899999964 566655 4699999999999999999999999999999999999999999999983 3 89
Q ss_pred EEEecCCchHHHhhcCeEEEEeC-CeEE-EecChhH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA 121 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~-G~~v-~~G~~~~ 121 (546)
|+++|++ ..+.+++|++++|++ |+++ +.|+.++
T Consensus 494 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 494 VVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999995 788899999999986 6876 5566543
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.69 E-value=1.6e-16 Score=194.06 Aligned_cols=113 Identities=23% Similarity=0.309 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++..+|.+ -.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus 1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1389 EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 44666777776653 35788875 44569999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. +++|||+++|++ +....+|+|++|++|+++..|+++++.+
T Consensus 1468 ~-~~~TvI~IAHRl--~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1468 F-EDCTVLTIAHRL--NTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred c-CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 479999999996 3456799999999999999999998754
No 347
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=1.7e-16 Score=176.37 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
.++++++.+||.+ ..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | ||
T Consensus 424 ~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tv 495 (556)
T PRK11819 424 PSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CA 495 (556)
T ss_pred HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eE
Confidence 4567899999964 566655 4699999999999999999999999999999999999999999999883 4 89
Q ss_pred EEEecCCchHHHhhcCeEEEEeC-CeEE-EecChhH
Q 009019 88 IASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA 121 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~-G~~v-~~G~~~~ 121 (546)
|+++|++ .++.+++|++++|++ |++. +.|+.++
T Consensus 496 i~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 496 VVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999995 789999999999985 7876 5676554
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=1.3e-16 Score=194.40 Aligned_cols=114 Identities=28% Similarity=0.323 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HH
Q 009019 7 RTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LR 78 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~ 78 (546)
+++.+++++..+|. +-.+|.||+. ...||||||||++|||++.++|+|++||||||+||+.++.++++. ++
T Consensus 707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 707 SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 34566666666653 3347889874 456999999999999999999999999999999999999999765 55
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ .+|+|+|++||++ .....+|+|++|++|+++..|+.+++.+
T Consensus 786 ~~-l~~kT~IlvTH~~--~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 786 DE-LKGKTRVLVTNQL--HFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hh-hcCCEEEEEECCh--hhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 43 3679999999997 3567899999999999999999988753
No 349
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=2.3e-16 Score=192.42 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhC-CCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLR 78 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~-P~il~LDEPtsgLD~~~~~~v~~~L~ 78 (546)
++.+.++++..||.+. .||.+|. ....||||||||++|||+|+++ |+||+||||||+||+.+...+.+.|+
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 3567778888877543 5788875 4456999999999999999996 89999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.. +++|||+++|++ +....+|+|++|++|+++..|+++++.+
T Consensus 1491 ~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1491 SAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 864 469999999996 4567899999999999999999998753
No 350
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=1.3e-16 Score=153.84 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
.++++++++.+++.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++..++|+|
T Consensus 101 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 175 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI 175 (195)
T ss_pred HHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 346778889999988777754 469999999999999999999999999999999999999999999887778999
Q ss_pred EEEEecCCchHHHhhcCeE
Q 009019 87 VIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v 105 (546)
+|+++|++ .++ ..+|-+
T Consensus 176 iii~sh~~-~~i-~~~~~~ 192 (195)
T PRK13541 176 VLLSSHLE-SSI-KSAQIL 192 (195)
T ss_pred EEEEeCCc-ccc-chhhee
Confidence 99999997 333 345554
No 351
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.3e-16 Score=168.65 Aligned_cols=111 Identities=28% Similarity=0.483 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++..++.+++.++.|++.. -.++.++ .||||.+|||.||+.|.++|++|+|||||.|.|.-+..+|.++++++
T Consensus 373 ~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l 447 (500)
T COG1129 373 DRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447 (500)
T ss_pred ChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence 34556678899999999863 4555554 69999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
+++|++||+++-+ .+|+..+||||++|++|+++..=+
T Consensus 448 A~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 448 AAEGKAILMISSE-LPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999 589999999999999999987433
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.6e-16 Score=146.28 Aligned_cols=77 Identities=47% Similarity=0.707 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
|||||+||++||++++.+|++++|||||+|||..++..+.+.++++.+.++|+++++|++ +++...+|+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999999999987789999999995 77888899999999875
No 353
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.2e-16 Score=166.27 Aligned_cols=105 Identities=31% Similarity=0.472 Sum_probs=94.5
Q ss_pred HcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009019 16 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95 (546)
Q Consensus 16 ~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~ 95 (546)
.++..+-.+|+||.+..| |||||||||+|||+++.+|.|++|||.||.||..+...+...|.++++ |+|.|++.|..+
T Consensus 657 Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS 734 (790)
T KOG0056|consen 657 ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS 734 (790)
T ss_pred HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh
Confidence 367888899999986665 999999999999999999999999999999999999999999999997 588899999964
Q ss_pred hHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 96 SEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 96 ~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ -.+|.|+++++|++++.|..++++.
T Consensus 735 -Ti-vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 735 -TI-VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -he-ecccEEEEEeCCeEeecCcHHHHHh
Confidence 44 4599999999999999999988654
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=3e-16 Score=191.84 Aligned_cols=114 Identities=26% Similarity=0.292 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLR 78 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~ 78 (546)
+++.+++++..+|.+ --+|.||+. ...||||||||++||||+..+|+|++||||||+||+.++.++++ .++
T Consensus 707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 707 PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 456777777776643 347889874 45699999999999999999999999999999999999998875 565
Q ss_pred HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+. +|+|+|++||++ +....+|+|++|++|+++..|+.+++.+
T Consensus 786 ~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 786 DEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 553 579999999996 4578899999999999999999988753
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.67 E-value=4.7e-16 Score=163.53 Aligned_cols=111 Identities=32% Similarity=0.406 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.++.+++++++.+..||.--.|.+|++ ||-||||||.|-++|..+|++|||||||+-|-|....+++++|++++
T Consensus 113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 113 DRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4567788999999999999888887765 99999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
++|+|||++||- ..|+.+++||+.+|++|+++-.-+
T Consensus 188 ~~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 188 AEGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HCCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999 589999999999999999876655
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=3.7e-16 Score=190.32 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+.++++..+|.+ -.|+.||+ ....||||||||++|||+|+++|+||+|||||++||..+...+.+.|++
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456778888888753 35777875 4456999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+ ++|||+++|.+ +....+|+|++|++|+++..|+++++.+
T Consensus 1399 ~~~-~~TvI~IaHRl--~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1399 SFS-NCTVILSEHRV--EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HcC-CCEEEEEecCH--HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 754 69999999996 3456799999999999999999988753
No 357
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.66 E-value=2.3e-16 Score=174.43 Aligned_cols=98 Identities=38% Similarity=0.600 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.++++++..++.+ -.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+..++.+.|++
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 355677778777754 24788876 4567999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009019 80 LSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
+. +|+|+|+++|++ + ..+.+|+|++|
T Consensus 504 ~~-~~~t~i~itH~~-~-~~~~~d~i~~l 529 (529)
T TIGR02857 504 LA-QGRTVLLVTHRL-A-LAERADRIVVL 529 (529)
T ss_pred hc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence 85 579999999997 3 35789999875
No 358
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.66 E-value=6e-16 Score=178.69 Aligned_cols=108 Identities=30% Similarity=0.383 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..+.++.+||.. ..++.+ ..||||||||+.||++|+.+| ++++|||||+|||+.+...+++.|+++.++|
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred HHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3457888999976 456644 569999999999999999999 9999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
.|||+++|++ ..+ ..+|+++.| ++|++++.|+++++.
T Consensus 884 ~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 884 NTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999996 444 689999999 799999999998764
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=6.7e-16 Score=185.49 Aligned_cols=112 Identities=27% Similarity=0.413 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~---~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+..+++ ++++.+||.+. .++.+ .+||||||||+.||++|+ .+|++++|||||+|||+.+..++++.|+++
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L 858 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL 858 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 344556 47889999875 67644 569999999999999998 699999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~~ 124 (546)
+++|.|||+++|++ ..+ +.+|++++|. +|+++..|+++++..
T Consensus 859 ~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 859 THQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 98899999999996 556 8999999996 799999999988653
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=5.9e-16 Score=174.66 Aligned_cols=106 Identities=26% Similarity=0.308 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
...+.++++.+++. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.
T Consensus 417 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 488 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG 488 (635)
T ss_pred HHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence 34577889999985 46677554 69999999999999999999999999999999999999999999887 35
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe-CCeEEE-ecChhH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 121 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~-~G~~~~ 121 (546)
|||+++|+. ..+..++|+++++. +|++.. .|+.++
T Consensus 489 tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 489 TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999994 78889999999998 798854 576665
No 361
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=1.4e-15 Score=148.63 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=79.4
Q ss_pred HHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 15 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 15 ~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++.+..++ .+..||||||||+++|++|+. +|++++|||||+|||+.+...+.+.|++++++|
T Consensus 109 ~~g~l~~~l~~-----~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~ 183 (213)
T cd03279 109 PQGEFDRFLAR-----PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183 (213)
T ss_pred hhcchHHHhcC-----CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 33445555555 445799999999999999985 578999999999999999999999999998779
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.|+|+++|++ +.+...+|++.++++|-
T Consensus 184 ~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 184 RMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred CEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999996 67888899999999874
No 362
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=1.5e-15 Score=182.61 Aligned_cols=102 Identities=25% Similarity=0.459 Sum_probs=91.9
Q ss_pred HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 009019 14 IIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90 (546)
Q Consensus 14 l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~ 90 (546)
|..+||.+. .|+.+ .+|||||+||+.||++|..+| ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus 460 L~~vGL~~L~ldR~~-----~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvV 534 (1809)
T PRK00635 460 LIDLGLPYLTPERAL-----ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV 534 (1809)
T ss_pred HHhccccCCCCCCch-----hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456788865 56655 469999999999999999999 8999999999999999999999999999889999999
Q ss_pred ecCCchHHHhhcCeEEEEe------CCeEEEecChhHH
Q 009019 91 IHQPSSEVFELFDRLYLLS------GGKTVYFGETSAA 122 (546)
Q Consensus 91 ~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~ 122 (546)
+|++ . +.+.+|++++|. +|++++.|+++++
T Consensus 535 eHd~-~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 535 EHDE-Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred eCcH-H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 9996 3 779999999996 7899999998876
No 363
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.8e-15 Score=174.45 Aligned_cols=107 Identities=28% Similarity=0.354 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHh---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~---~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+..++++.+||.. ..++. .+.||||||||+.||++|+. +|++++|||||+|||+.++..+++.|+++.++|
T Consensus 807 ~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G 881 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG 881 (924)
T ss_pred HHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3457888899975 34553 45799999999999999997 599999999999999999999999999999889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 122 (546)
.|||+++|++ ..+ ..+|+++.| ++|++++.|+++++
T Consensus 882 ~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999996 444 679999999 79999999998764
No 364
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.63 E-value=1.2e-15 Score=172.75 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCccccccccc----CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig----~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++.+||++..++..| ......||||||||++|||+|+++|++++|||||+|||+.+...+.+.+++
T Consensus 551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--- 627 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--- 627 (659)
T ss_pred HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence 4567889999999876654332 113467999999999999999999999999999999999999999998876
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
.|+|+|+++|+++ ..+.+|++++|+
T Consensus 628 ~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 628 FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 3899999999973 358899999997
No 365
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=1.9e-15 Score=184.70 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=87.1
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHH
Q 009019 22 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS--RDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 22 ~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~--~~g~tvi~~~H~p~~~i~ 99 (546)
-.+|.+|. ....||||||||++|||++..+|++++||||||+||+.++.++.+.+.+.. .+|+|+|+++|++ +. .
T Consensus 749 g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~-l 825 (1522)
T TIGR00957 749 GDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SY-L 825 (1522)
T ss_pred CCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hh-h
Confidence 34677776 456799999999999999999999999999999999999999999997642 3579999999997 34 4
Q ss_pred hhcCeEEEEeCCeEEEecChhHHHH
Q 009019 100 ELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 100 ~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+|+|++|++|+++..|+.+++.+
T Consensus 826 ~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 826 PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 5699999999999999999988753
No 366
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.61 E-value=4.3e-15 Score=137.74 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+++++++-+.++.+||- +.+|- +++.||.||||||++||+|+-+|+|++.||...+||...+.++.++.-+
T Consensus 120 ~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le 194 (267)
T COG4167 120 LEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred CChHHHHHHHHHHHHHhccCcccccc-----chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH
Confidence 35678899999999999984 56665 5678999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.+ .|.+-|.++.+ ..-+-++.|+|++|++|+++..|++.++..
T Consensus 195 LQek~GiSyiYV~Qh-lG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 195 LQEKQGISYIYVTQH-IGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhCceEEEEech-hhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 986 69999999988 578999999999999999999999987643
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=2.5e-15 Score=183.20 Aligned_cols=97 Identities=27% Similarity=0.378 Sum_probs=85.3
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhh
Q 009019 23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~g~tvi~~~H~p~~~i~~~ 101 (546)
.+|.+|. ....||||||||++|||+++.+|++++|||||+|||+.++.++++. ++++. +|+|+|+++|++ ..+ ..
T Consensus 538 ~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~-~~~-~~ 613 (1490)
T TIGR01271 538 DKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKL-EHL-KK 613 (1490)
T ss_pred ccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCh-HHH-Hh
Confidence 3566776 4668999999999999999999999999999999999999999984 66665 489999999997 444 56
Q ss_pred cCeEEEEeCCeEEEecChhHHH
Q 009019 102 FDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 102 ~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|++|++|+++..|+.++..
T Consensus 614 ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 614 ADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999988875
No 368
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.61 E-value=1.4e-15 Score=168.20 Aligned_cols=86 Identities=33% Similarity=0.475 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..++++ -.||.+|+ ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456777888877654 34899987 3456999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCC
Q 009019 80 LSRDGRTVIASIHQP 94 (546)
Q Consensus 80 l~~~g~tvi~~~H~p 94 (546)
+. +++|+|+++|++
T Consensus 516 ~~-~~~TvIiItHrl 529 (529)
T TIGR02868 516 AL-SGKTVVVITHHL 529 (529)
T ss_pred hc-CCCEEEEEecCC
Confidence 74 469999999984
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=163.34 Aligned_cols=105 Identities=33% Similarity=0.494 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+.+++.++..+|+.+. ++.++ .||||||+||.+|++|+.+|++|+|||||++||..+...+-+.|++. .| |
T Consensus 132 e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-t 202 (530)
T COG0488 132 EARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-T 202 (530)
T ss_pred HHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-c
Confidence 4678889999999877 77665 59999999999999999999999999999999999999999998854 46 9
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA 121 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~ 121 (546)
+|+++|| +..+-+.|++|+-++.|++ .|.|..+.
T Consensus 203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred EEEEeCC-HHHHHHHhhheEEecCCceeEecCCHHH
Confidence 9999999 8999999999999999976 56676554
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=3.5e-15 Score=144.22 Aligned_cols=93 Identities=26% Similarity=0.273 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++++++++. .+..++ .++.||||||||++||++++ .+|++++|||||+|||+.++..+.+.|+++++
T Consensus 94 ~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~ 165 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK 165 (197)
T ss_pred hhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc
Confidence 3466777776 444555 44579999999999999997 46699999999999999999999999999976
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 83 DGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
+.|||+++|++ .. .+.+|+++.+..
T Consensus 166 -~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 166 -ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred -CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 68999999996 44 478999999973
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.60 E-value=5.1e-15 Score=180.75 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=82.3
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009019 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 103 (546)
Q Consensus 24 ~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 103 (546)
++.+|. ....||||||||++|||+|+.+|++++|||||++||+.++.++++.+.....+|+|+|+++|++ .. ...+|
T Consensus 773 ~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad 849 (1560)
T PTZ00243 773 ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV-HV-VPRAD 849 (1560)
T ss_pred hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCC
Confidence 344554 4567999999999999999999999999999999999999999875432233589999999996 44 47899
Q ss_pred eEEEEeCCeEEEecChhHHH
Q 009019 104 RLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 104 ~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|++|++|++++.|+.++..
T Consensus 850 ~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 850 YVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999988764
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=4.4e-15 Score=148.83 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCcccccc---------------cccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCC
Q 009019 6 KRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLD 66 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD 66 (546)
..+++.++++.+||..-... ..-+..++.||||||||++||++|+ .+|+++++||||+|||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 45788899999998611000 0112245679999999999999998 4789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 67 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 67 ~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
+.++..+.+.|+++++ |.|+|+++|++ ++.+.+|+++-+.
T Consensus 203 ~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999999964 88999999994 7888999998875
No 373
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.3e-14 Score=140.99 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++++++++--+|.+..|+.+ +.+|.||+-|++.|.+.-.+|+||++||-.+-.|+.=+..-.+.++++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999965 679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 128 (546)
.+++.|||+++|++ ..+.++||++++|++|++.+.|+++++.+++..
T Consensus 194 ~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 194 VEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 88889999999995 789999999999999999999999999987754
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=6e-15 Score=147.52 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCccccccc---------ccC--------cccCCCCHHHHHHHHHHHHHHhC----CCeEEEeCCCCCC
Q 009019 7 RTLVERTIIEMGLQDCADTV---------IGN--------WHLRGISGGERRRVSIALEILMR----PRLLFLDEPTSGL 65 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~---------ig~--------~~~~~lSgGer~Rvsia~~l~~~----P~il~LDEPtsgL 65 (546)
.+.++++++.+|++...+.. +.+ ..+..||||||||++||++++.+ |+++++||||+||
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 34567888999986432211 111 12378999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-CCe
Q 009019 66 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGK 112 (546)
Q Consensus 66 D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~ 112 (546)
|+.++..+.+.|++++++|.+||+++|++ ++.+.+|+++++. ++.
T Consensus 191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 191 DNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 99999999999999988799999999994 5678999999996 443
No 375
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=5.6e-15 Score=135.32 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 009019 7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDG 84 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~g 84 (546)
+.+..+.|+.++|.+. .++ .+..||||||||.+++|.|..-|+||+||||||.||+.++..|-+++.++. .++
T Consensus 110 r~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 110 RAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred hHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 3556778999999764 444 345699999999999999999999999999999999999999999999987 578
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
+.++-+||++ .+..+.+|+++-+..|+.
T Consensus 185 vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 9999999997 678899999999998874
No 376
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=5.2e-15 Score=143.11 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++|||||+|||..++..+.+.|+++++
T Consensus 90 ~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 90 QDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 4566677766 55566644 57999999999999999 589999999999999999999999999999865
Q ss_pred C---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 83 D---GRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 83 ~---g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
+ ++||++++|++ .++..+ |+|.+|+.|+
T Consensus 162 ~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 162 KQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 3 46899999996 567664 9999998764
No 377
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=138.11 Aligned_cols=100 Identities=29% Similarity=0.472 Sum_probs=90.3
Q ss_pred HHHHHH--cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009019 11 ERTIIE--MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV 87 (546)
Q Consensus 11 ~~~l~~--lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv 87 (546)
.+-++. +||++..++.+|- |||||||-++++.+-++.|+||+|||=|+.|||.++..|++.-.++.+ .+.|.
T Consensus 128 ~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTt 202 (263)
T COG1101 128 RERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTT 202 (263)
T ss_pred HHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCce
Confidence 344554 5778899998874 999999999999999999999999999999999999999999999875 57899
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009019 88 IASIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
+++||. ..++..+-+|+++|++|+||.+
T Consensus 203 lMVTHn-m~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 203 LMVTHN-MEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred EEEecc-HHHHHhhCCeEEEEeCCeEEEE
Confidence 999999 4789999999999999999976
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=8.6e-15 Score=145.69 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=69.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009019 30 WHLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 30 ~~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
..++.||||||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++ ++.+++|++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEE
Confidence 3567899999999999999974 5899999999999999999999999999976 78888888874 688999999
Q ss_pred EEEe
Q 009019 106 YLLS 109 (546)
Q Consensus 106 ~lL~ 109 (546)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9996
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=8.8e-15 Score=143.04 Aligned_cols=92 Identities=23% Similarity=0.244 Sum_probs=78.8
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++.++|.+..++.+ +.+|+|||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.|
T Consensus 109 ~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~ 182 (212)
T cd03274 109 GEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQ 182 (212)
T ss_pred CcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCE
Confidence 45566777877777754 4699999999999999974 4799999999999999999999999999864 578
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
+|+++|++ ++.+.+|++++|+.
T Consensus 183 ~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 183 FIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEECcH--HHHHhCCEEEEEEe
Confidence 88888985 78899999999974
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=3.2e-14 Score=138.22 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=70.8
Q ss_pred ccCCCCHHHHHH------HHHHHHHHhCCCeEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009019 31 HLRGISGGERRR------VSIALEILMRPRLLFLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 31 ~~~~lSgGer~R------vsia~~l~~~P~il~LDEPtsgLD~~~~~-~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~ 102 (546)
.++.||+||||| ++||++++.+|+++++||||+|||+.++. .+.+.|++++++ |.|||+++|++ . ....+
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~ 189 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAA 189 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhC
Confidence 556799999996 78999999999999999999999999999 999999999876 89999999996 3 45789
Q ss_pred CeEEEEe-CC
Q 009019 103 DRLYLLS-GG 111 (546)
Q Consensus 103 D~v~lL~-~G 111 (546)
|+++.|. +|
T Consensus 190 d~i~~l~~~~ 199 (204)
T cd03240 190 DHIYRVEKDG 199 (204)
T ss_pred CEEEEEeeCC
Confidence 9999996 44
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.8e-14 Score=131.00 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++..++++.+++..|++.+..=.. .+.++||||+|||.|||.++.+=+||+|||||+.||..++.-+++++++-.
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K 199 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK 199 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence 5667788899999999997543322 456799999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 82 RDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
..|..+|-+-|| .+--.+.+||++-+..
T Consensus 200 a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 200 ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 899999999999 4555667999987753
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.50 E-value=1.7e-14 Score=136.30 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g 84 (546)
+++++-+++..+|+.+..|-.- .++.+|.-||-|+|.||.+++.+|++|+.||||+.+||.++.++.++|.++.+ +|
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred hHHHHHHHHHHhccccHHHHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 4567788999999998887643 47889999999999999999999999999999999999999999999999986 68
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.||++++|| ...+-+.+|++-+|.-|+.+.+++.+++++
T Consensus 210 TtILL~s~D-l~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 210 TTILLISHD-LQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred ceEEEEccc-HHHHHHHhhheEEEEecccccccchhHHhc
Confidence 999999999 578999999999999999999999998764
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.48 E-value=1.1e-14 Score=134.11 Aligned_cols=115 Identities=28% Similarity=0.420 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-----CC--CeEEEeCCCCCCCHHHHHHHHH
Q 009019 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQ 75 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-----~P--~il~LDEPtsgLD~~~~~~v~~ 75 (546)
.+++...++++-..++|++...+.+ ..|||||-|||-+|...+. || ++|+||||.++||.+....+-+
T Consensus 99 ~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 99 DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 4566677888999999988776644 5799999999999987764 55 6999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 76 ~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.|.++|..|.+||++.||. ....+.+|++.+|+.|++...|..+++.
T Consensus 174 ll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 9999999999999999995 6788999999999999999999999875
No 384
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=1.9e-13 Score=160.76 Aligned_cols=114 Identities=25% Similarity=0.321 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++-+++++.-.| .+.-.|.||++. -.||||||||+++|||+-++.+|.+||.|.|.+|+....++.+..-+.
T Consensus 611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~ 689 (1381)
T KOG0054|consen 611 ERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG 689 (1381)
T ss_pred HHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh
Confidence 444555555433 345567788744 469999999999999999999999999999999999999998865544
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.-+++|+|++|||. +..+.+|.|++|++|++...|+.+++.+
T Consensus 690 ~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 690 LLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 44679999999984 6789999999999999999999998873
No 385
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.46 E-value=2.8e-13 Score=128.83 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 34 GISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
=||||||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|++ +..+.+|+++.+.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEE
Confidence 39999999999999996 68999999999999999999999999999988789999999996 4567899999997
Q ss_pred C
Q 009019 110 G 110 (546)
Q Consensus 110 ~ 110 (546)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.45 E-value=2.3e-13 Score=144.17 Aligned_cols=110 Identities=25% Similarity=0.379 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 5 EKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
..+.++-+++..+| +++.+++.+ +++|||+|+|+++|++|..+|++|+|||||+|||..+..-+-+.|++..+.
T Consensus 196 ~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~ 270 (614)
T KOG0927|consen 196 TFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI 270 (614)
T ss_pred hHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence 34455667777777 456677744 679999999999999999999999999999999999999998888776432
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCe-EEEecChhHH
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLSGGK-TVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~-~v~~G~~~~~ 122 (546)
++++++|. ...+-..|.+|+-+.+++ +.|.|+.++-
T Consensus 271 --~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 271 --ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred --eEEEEecc-hhhhhhHhhhhheecccceeeecCCHHHH
Confidence 89999997 688899999999999998 5566777653
No 387
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.3e-13 Score=126.15 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
...+.+.++.+||....|..++ .||-||||||+||+-+++.+++-+||||+++||......+-..+..-+.+|-.
T Consensus 108 ~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGi 182 (209)
T COG4133 108 AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182 (209)
T ss_pred hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCE
Confidence 3567889999999999999876 59999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCch
Q 009019 87 VIASIHQPSS 96 (546)
Q Consensus 87 vi~~~H~p~~ 96 (546)
||.+||||..
T Consensus 183 VllttHq~l~ 192 (209)
T COG4133 183 VLLTTHQPLP 192 (209)
T ss_pred EEEecCCccC
Confidence 9999999854
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.44 E-value=3.5e-13 Score=142.02 Aligned_cols=114 Identities=28% Similarity=0.431 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 2 PWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
.+.+.++.+.+++++++...+ .++ ..+.||||.+||+-+||+|..+|++|+..+||.|||..+...+.+.|.+.
T Consensus 375 ~~~~i~~~a~~li~~fdVr~~~~~~-----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 375 DRRAIRKFARELIEEFDVRAPSPDA-----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred CHHHHHHHHHHHHHHcCccCCCCCc-----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 356677888999999998732 333 34679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
++.|+.|++++-+ ..|+++++|||.+|++|+++...++++
T Consensus 450 r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 450 RDAGKAVLLISED-LDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HhcCCEEEEEehh-HHHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999 589999999999999999998877765
No 389
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.42 E-value=3.3e-13 Score=132.02 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=70.1
Q ss_pred ccCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhhcC-
Q 009019 31 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 103 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g-~tvi~~~H~p~~~i~~~~D- 103 (546)
.+.+||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|+++|+. .++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence 5678999999998877554 4799999999999999999999999999999876 5 5899999995 45667776
Q ss_pred -eEEEEeCCeE
Q 009019 104 -RLYLLSGGKT 113 (546)
Q Consensus 104 -~v~lL~~G~~ 113 (546)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888888874
No 390
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.39 E-value=1.6e-12 Score=142.23 Aligned_cols=108 Identities=24% Similarity=0.318 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+.+...+..+++.. ...+.| +.||||||.||.+|+.++.+|.+|+|||||+.||..+...+-+.|+... -
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G 487 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---G 487 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C
Confidence 466788899999863 455655 4699999999999999999999999999999999999999999988874 5
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|| ...+-+.+++++.+.++-..|.|..++..
T Consensus 488 tvl~VSHD-r~Fl~~va~~i~~~~~~~~~~~g~y~~y~ 524 (530)
T COG0488 488 TVLLVSHD-RYFLDRVATRIWLVEDKVEEFEGGYEDYL 524 (530)
T ss_pred eEEEEeCC-HHHHHhhcceEEEEcCceeEcCCCHHHHH
Confidence 99999999 58999999999999983334447766543
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.38 E-value=8.9e-13 Score=137.20 Aligned_cols=97 Identities=31% Similarity=0.457 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
-+.+++++.|+|++..|+-+. .|||||-||++||.+++.+.+++++|||||-||...+....+.+++|++.+++|
T Consensus 192 g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~V 266 (591)
T COG1245 192 GKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266 (591)
T ss_pred CcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeE
Confidence 457889999999999998664 699999999999999999999999999999999999999999999999989999
Q ss_pred EEEecCCchHHHhhcCeEEEEeC
Q 009019 88 IASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
|++.||. .-+--+.|-|.++.+
T Consensus 267 iVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEechH-HHHHHhhheeEEEec
Confidence 9999994 666777888888865
No 392
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=4.7e-12 Score=139.74 Aligned_cols=110 Identities=32% Similarity=0.431 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+.-+.|.++||.-. ..|. ...+|||||.||+-+|.+|..+. .+.+|||||+||......++++.|.+|..+|-
T Consensus 801 rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 34456778888643 2443 44579999999999999998776 89999999999999999999999999999999
Q ss_pred EEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009019 86 TVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 124 (546)
|||++.|.. ++.+.+|.|+=| .+|++|..|+|+++.+
T Consensus 877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999985 789999999988 4689999999999765
No 393
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.3e-12 Score=131.07 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 34 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
.||||||||+++|++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|+++|+|. +...+|+++++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 689999999973 568999999998
Q ss_pred CCe
Q 009019 110 GGK 112 (546)
Q Consensus 110 ~G~ 112 (546)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 394
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.34 E-value=3.9e-12 Score=119.10 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 34 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
++|+||+||+++|++|.. +|+++++|||++|+|+.....+.+.++++.++|.++|++||++ ++.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 699999999999999987 7899999999999999999999999999876689999999996 4567899999986
Q ss_pred C
Q 009019 110 G 110 (546)
Q Consensus 110 ~ 110 (546)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.32 E-value=1.1e-12 Score=127.06 Aligned_cols=83 Identities=22% Similarity=0.153 Sum_probs=74.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
...+|+||||++.|+++ +.+|+++++|||++|||+..+..+.. .++.+.+.|.|+|+++|+ .++.+++|++..+.+
T Consensus 89 ~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~ 165 (200)
T cd03280 89 LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVEN 165 (200)
T ss_pred cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEE
Confidence 35689999999999977 58999999999999999999999974 688888789999999998 468899999999999
Q ss_pred CeEEEec
Q 009019 111 GKTVYFG 117 (546)
Q Consensus 111 G~~v~~G 117 (546)
|++.+.+
T Consensus 166 g~l~~~~ 172 (200)
T cd03280 166 ASMEFDP 172 (200)
T ss_pred EEEEEec
Confidence 9998874
No 396
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=7.8e-12 Score=147.39 Aligned_cols=113 Identities=23% Similarity=0.350 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+-++|+..+|.++ .|+.|.+ ....+|-||||.+++||||+++++||+|||+|+..|+.+-..|.++|++-
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 344455555544332 4455543 34579999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
=+ ++|||.+.|.. ..+ --+|||+||++|+++++|+|.++.+
T Consensus 1322 F~-dcTVltIAHRl-~TV-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1322 FK-DCTVLTIAHRL-NTV-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred hc-CCeEEEEeecc-chh-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 44 59999999995 444 4599999999999999999998764
No 397
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=4.5e-12 Score=114.40 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHh
Q 009019 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~-~l~~ 82 (546)
+.+++.++..+++.||....++ .+.+||||||-||++-|+|+..|+.++||||+|.||.+-+.+..+..- ++..
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ 183 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA 183 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3577788999999999988877 567899999999999999999999999999999999999999988754 4556
Q ss_pred CCCEEEEEecCCchHHH
Q 009019 83 DGRTVIASIHQPSSEVF 99 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~ 99 (546)
.|..+|.+||| ..++.
T Consensus 184 agiPtv~VTHD-~~Dvp 199 (213)
T COG4136 184 AGIPTVQVTHD-LQDVP 199 (213)
T ss_pred cCCCeEEEecc-cccCC
Confidence 79999999999 45553
No 398
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.31 E-value=4.6e-12 Score=141.13 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009019 33 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~----P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ |++||++||+| .+...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999985 79999999997 345789999999
Q ss_pred eCCe
Q 009019 109 SGGK 112 (546)
Q Consensus 109 ~~G~ 112 (546)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8875
No 399
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.28 E-value=7.1e-10 Score=109.82 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=150.1
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCC--hhhHHhh----hhhHHHHHHHHHHHHhhhhhhHHhhh--H
Q 009019 232 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSILAR----GSCASFVFGFVTFMSIGGFPSFVEDM--K 302 (546)
Q Consensus 232 R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~--~~~i~~r----~~~lf~~~~~~~f~~~~~~p~~~~er--~ 302 (546)
|.++...|||..+..-+++-+++.+++|.++-.. +.+ ..+.... .|.+.+.....+. ..+.. ...|| .
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 6677888999888888888888888888887542 111 1121111 1111111111111 11121 22222 3
Q ss_pred HHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 009019 303 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 382 (546)
Q Consensus 303 vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~ 382 (546)
++.|= ...--+...|++++.+.+++..++..+++..+.+++.+++.. .++.+++..++...+..++|.++++..++.
T Consensus 78 ~~~~~-~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKEI-LVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 33332 233446889999999999999999999999999988775543 344444455555667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcC
Q 009019 383 LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQ 462 (546)
Q Consensus 383 ~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~ 462 (546)
.....+.+.+..+++.+||.+.+.+.+|+ +|+ |+.+++|.+|+.|++-..-. |
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~-~~~-~i~~~~P~~~~~~~~r~~~~-~------------------------ 207 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPA-WMQ-GLAKINPLTYAVDGARYYLA-G------------------------ 207 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHH-HHH-HHHHHCcHHHHHHHHHHHHh-C------------------------
Confidence 88888888888888999999999999997 344 48999999999998554221 1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHH
Q 009019 463 IDVRRSKWIDLSVIFSMIISYRIIFF 488 (546)
Q Consensus 463 ~~~~~~~w~~~~iL~~~~~~f~~l~~ 488 (546)
-....+.|.++++|+++.+++.+++.
T Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 208 VSPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHH
Confidence 01012356788999998888877654
No 400
>PRK10869 recombination and repair protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=136.68 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009019 33 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
+.+||||+||++||+.++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+| .+...+|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 68999999997 356899999999
Q ss_pred eCCe
Q 009019 109 SGGK 112 (546)
Q Consensus 109 ~~G~ 112 (546)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8754
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.3e-11 Score=146.74 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=74.9
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009019 30 WHLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 30 ~~~~~lSgGer~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
..+++|||||++||++|++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|+| ....
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence 4578899999999999999985 7999999999999999999999999999988899999999996 6788
Q ss_pred hhcCeEEEEeCC
Q 009019 100 ELFDRLYLLSGG 111 (546)
Q Consensus 100 ~~~D~v~lL~~G 111 (546)
.++|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.1e-12 Score=134.16 Aligned_cols=107 Identities=24% Similarity=0.365 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+..+++|..+|.++ .+.. ..+.||||-|-|+++||||..+||||+|||||+.||..+..-+.+.|+.+.
T Consensus 174 l~ei~~~~L~glGFt~emq~~-----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--- 245 (582)
T KOG0062|consen 174 LEEIYDKILAGLGFTPEMQLQ-----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--- 245 (582)
T ss_pred HHHHHHHHHHhCCCCHHHHhc-----cccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---
Confidence 3445555888888864 3444 446799999999999999999999999999999999999999999998875
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA 121 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~ 121 (546)
.|+|+++|| +..+-+.|..|+.+++-++ .|-|..++
T Consensus 246 ~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 246 ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 699999999 7888888888888877665 34565544
No 403
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=137.83 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009019 31 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~----------~~P~il~LDEPt-sgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||+++|++ +..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 45689999999999999887 599999999998 789999999999999999 588999999996 456
Q ss_pred hhcCeEEEEeC-CeE
Q 009019 100 ELFDRLYLLSG-GKT 113 (546)
Q Consensus 100 ~~~D~v~lL~~-G~~ 113 (546)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 554
No 404
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.24 E-value=2e-11 Score=127.34 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=83.5
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 009019 11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 89 (546)
Q Consensus 11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~ 89 (546)
.++++-|+|++..++.+. +|||||.|||+||.+|..++++.+||||++-||+..+..+-+.+++... .+.|.++
T Consensus 437 ~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v 511 (591)
T COG1245 437 TEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511 (591)
T ss_pred HhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE
Confidence 467778899999988664 6999999999999999999999999999999999999999999999986 5789999
Q ss_pred EecCCchHHHhhcCeEEEEe
Q 009019 90 SIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 90 ~~H~p~~~i~~~~D~v~lL~ 109 (546)
+-||. .-+--+.||+++..
T Consensus 512 VdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 512 VDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred Eecce-ehhhhhhceEEEEe
Confidence 99994 66777899998775
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.7e-11 Score=128.08 Aligned_cols=100 Identities=27% Similarity=0.412 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
++.+.+-+..+||+ +.+... +.+||||||=||.+|.....+|.+|+|||||+.||-.+-..+.+.|+... .
T Consensus 459 ~ee~r~hl~~~Gl~g~la~~s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G 530 (582)
T KOG0062|consen 459 EEEIRRHLGSFGLSGELALQS-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G 530 (582)
T ss_pred HHHHHHHHHhcCCCchhhhcc-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C
Confidence 35567778999997 355553 46799999999999999999999999999999999999999998888873 4
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVY 115 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~ 115 (546)
.||+++|+ .+.+-.+|+.+.+..+|++.-
T Consensus 531 GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 531 GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 79999999 588999999999999999854
No 406
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.23 E-value=1.5e-11 Score=134.45 Aligned_cols=100 Identities=30% Similarity=0.399 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCccccccccc-CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig-~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.+.+.++|.+.||.+..++.=+ +..-+-||+|||||++.||.|+++|++++|||.|++||..+...+++.+++-.. +.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-CC
Confidence 4667889999999998877543 234567999999999999999999999999999999999999999999988543 58
Q ss_pred EEEEEecCCchHHHhhcCeEEEEe
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
|||.+.|+| .+.++.++.+-+.
T Consensus 566 tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 566 TVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred EEEEeccch--hhHHHHhhheeec
Confidence 999999996 4677777766554
No 407
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.19 E-value=6.6e-10 Score=107.93 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=117.9
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 009019 313 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 392 (546)
Q Consensus 313 Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~ 392 (546)
-+...++++|.+..++..++.+++...+.|++.|++.+ ++..+++.+++...+..+++.++++++++... ......
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence 35567899999999999999999999999999999865 45556666677778888999999999886643 334444
Q ss_pred HHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccchhHH
Q 009019 393 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID 472 (546)
Q Consensus 393 ~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~~ 472 (546)
..+.++++|.+.+.+.+|+ +++ |+.+++|.+|+.+++....+.| . ..+.|.+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~ 184 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQA 184 (208)
T ss_pred HHHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHH
Confidence 4556667888899999997 344 4999999999999987654421 0 1236889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 009019 473 LSVIFSMIISYRIIFFVMIKISED 496 (546)
Q Consensus 473 ~~iL~~~~~~f~~l~~~~l~~~~~ 496 (546)
+++|+++.+++.+++....|.++|
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999998888877765543
No 408
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.17 E-value=8.8e-09 Score=103.45 Aligned_cols=233 Identities=11% Similarity=0.033 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHH
Q 009019 226 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKV 303 (546)
Q Consensus 226 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~v 303 (546)
...+.+|.++..+|+ |.....-+++-++.-+++|..+-....+..+ ..-.-|+.-+.+.+..+ ++.-.. --.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g---~~y~~f~~pg~l~~~~~~~~~~~~--~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG---VSYAAFLAAGMVATSAMTASTFET--IYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC---CCHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 556779999999999 8888888888888888888887543211111 11122332222222111 110000 0023
Q ss_pred HHHHhhCCCc--------chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 304 FQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 375 (546)
Q Consensus 304 f~RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i 375 (546)
+.|||.+|.+ +...+++|+++.+.-..++..++...+.++ .|..+. ...+.....+++..++..++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444442 678899999998877776666665555443 344433 233333344455566667899999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHH
Q 009019 376 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEY 455 (546)
Q Consensus 376 ~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~ 455 (546)
+++.++......+...+..+++.+||.+-+.+.+|+ |..++.+++|..|+.|++-..-+
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~------------------- 218 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVML------------------- 218 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHh-------------------
Confidence 999999998888888888889999999999999997 43448899999999998554321
Q ss_pred HHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 456 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 493 (546)
Q Consensus 456 vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~ 493 (546)
|-+ ..+.|.++++++++.+++..++....|.
T Consensus 219 ------g~~-~~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 219 ------GGP-GTQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred ------CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1124567888888888887777655544
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.14 E-value=8.5e-11 Score=106.17 Aligned_cols=57 Identities=39% Similarity=0.721 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts 63 (546)
.+++++++++.+++.+..++.++. ..+.||||||||++||++|+.+|++++|||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 456789999999999998998865 447899999999999999999999999999996
No 410
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.13 E-value=8.7e-11 Score=124.88 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009019 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
...+.+..+|..+||....++. ..+.||+|||+||..|+.++..|.||+|||||+|||..+...+-+.|.+.-
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--- 556 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--- 556 (614)
T ss_pred chHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---
Confidence 3456778899999998444332 446799999999999999999999999999999999999888888877663
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009019 85 RTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA 121 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~ 121 (546)
.+||.++|+- --|-+.+++|.+-.+|.+ .+.|+...
T Consensus 557 Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 557 GGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred Cceeeeechh-hHHHHHHHHhHhhccCceeecCccHHH
Confidence 4899999994 678888999998876654 56676554
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=6.2e-11 Score=116.74 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=71.2
Q ss_pred cCCCCHHHHHHHHHHHHH--HhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeE
Q 009019 32 LRGISGGERRRVSIALEI--LMRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l--~~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
.+++|.|+++++.+++.+ +++|++++|||| |++||+.+.... .++.+.+ .|.++|++||. .++.+++|++
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~ 162 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEV 162 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcC
Confidence 357999999999999999 899999999999 999999888543 3455554 58999999996 5889999999
Q ss_pred EEEeCCeEEEecC
Q 009019 106 YLLSGGKTVYFGE 118 (546)
Q Consensus 106 ~lL~~G~~v~~G~ 118 (546)
..+++|++.+.++
T Consensus 163 ~~i~~g~~~~~~~ 175 (222)
T cd03285 163 PNVKNLHVTALTD 175 (222)
T ss_pred CCeEEEEEEEEEe
Confidence 9999999987764
No 412
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.11 E-value=1.7e-08 Score=99.81 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=133.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHh-hhhhHHHHHHHHHHHHhhhhhhHHhhhH--HHHHHhhCCCcc
Q 009019 238 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMK--VFQRERLNGHYG 314 (546)
Q Consensus 238 ~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~-r~~~lf~~~~~~~f~~~~~~p~~~~er~--vf~RE~~~g~Y~ 314 (546)
+|||.....-+.+-+++-+..+.+|-+.. +.+..+. -.+.+.+...+.+. +..--....||+ .+.|=+.. =.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~er~~G~l~rl~~~-P~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAF--TGQAIAVARDRRYGALKRLGAT-PLP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhCHHHHHhcC-CCc
Confidence 68998888888888887777777776521 1111111 11111111111111 111112334443 34444433 337
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH
Q 009019 315 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP---NFLMGIITGAG 391 (546)
Q Consensus 315 ~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p---~~~~a~~~~~~ 391 (546)
...|+++|++..++..++..+++. +++++.|++...... ..++...+....+.+++.+++++.+ +.+.+..+++.
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999998888776655554 556777887654332 2222333344445566666666664 34444667777
Q ss_pred HHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccchhH
Q 009019 392 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI 471 (546)
Q Consensus 392 ~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~ 471 (546)
+..+++++||.+.|.+.+|+ +++ |+.+++|++|+.+++-.--. | +-+ ....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~-~lq-~i~~~~P~t~~~~~~r~~~~-~-----------------------~~~-~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT-WIK-WFVRVQPSSYATEALRQAAT-V-----------------------SVD-TFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccH-HHH-HHHHhCcHHHHHHHHHHHHc-C-----------------------CCC-hhhHHH
Confidence 88889999999999999997 344 49999999999997654211 1 001 123677
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009019 472 DLSVIFSMIISYRIIFFVM 490 (546)
Q Consensus 472 ~~~iL~~~~~~f~~l~~~~ 490 (546)
++++++++.+++..++...
T Consensus 209 ~~~~l~~~~~v~~~la~~~ 227 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAIR 227 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888876665443
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.09 E-value=8e-10 Score=122.43 Aligned_cols=90 Identities=30% Similarity=0.400 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE--
Q 009019 33 RGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL-- 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL-- 108 (546)
.+|||||.||+-+|..+-++= =+.+||||+-||.+..-.+++++|++|...|-|+|++.||+ ++...+|+|+=+
T Consensus 480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGP 557 (935)
T COG0178 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGP 557 (935)
T ss_pred CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCC
Confidence 469999999999999997763 46799999999999999999999999999999999999994 788999999987
Q ss_pred ----eCCeEEEecChhHHHH
Q 009019 109 ----SGGKTVYFGETSAAFE 124 (546)
Q Consensus 109 ----~~G~~v~~G~~~~~~~ 124 (546)
.+|+|++.|+++++.+
T Consensus 558 gAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 558 GAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred CCCcCCCEEEEccCHHHHHh
Confidence 4799999999999864
No 414
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.09 E-value=4.8e-08 Score=97.90 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCChhhHH--hhhhhHHHHHHHHHHH----Hhhhhhh
Q 009019 224 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSIL--ARGSCASFVFGFVTFM----SIGGFPS 296 (546)
Q Consensus 224 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~~~~i~--~r~~~lf~~~~~~~f~----~~~~~p~ 296 (546)
+++..+++|.++...|||..+..-++.-+++.+++|.+|... +.+..... +..-..|.+.+...+. +...-..
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~~ 81 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSLS 81 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 578999999999999999999999999999999999988542 11000000 0011122222221111 1111112
Q ss_pred HHhhh--HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 297 FVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 374 (546)
Q Consensus 297 ~~~er--~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~ 374 (546)
...|| ....+=+... -+...+.+++++..+-..++..++..++.+. .|.+.+...++.....+++......++|++
T Consensus 82 ~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~ 159 (253)
T TIGR03861 82 MVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLA 159 (253)
T ss_pred hHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2333334333 3778899999999987777776665555443 366655444433334444455667789999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCc-cccccccccccHHHHHHHHHHH
Q 009019 375 IASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPK-PVWRYPMSYLSFHYWALQGQYQ 433 (546)
Q Consensus 375 i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~-~~W~~~~~yiS~~~Ya~~~l~~ 433 (546)
++.++++......+.+.+..+++..+|.+-+.+.+|. +-|..|+.+++|..|..|++-.
T Consensus 160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999877777777778888888999988777642 1254458889999999987653
No 415
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.9e-10 Score=133.36 Aligned_cols=78 Identities=29% Similarity=0.281 Sum_probs=69.0
Q ss_pred ccCCCCHHHHHHH------HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009019 31 HLRGISGGERRRV------SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 31 ~~~~lSgGer~Rv------sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
.+..|||||++++ ++|++++.+|+++++||||+|||+..+..+.+.|..++..|.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 5678999999954 555677889999999999999999999999999999887788999999996 47789999
Q ss_pred EEEEeC
Q 009019 105 LYLLSG 110 (546)
Q Consensus 105 v~lL~~ 110 (546)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 416
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.05 E-value=5.6e-10 Score=132.54 Aligned_cols=80 Identities=29% Similarity=0.278 Sum_probs=69.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009019 30 WHLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 30 ~~~~~lSgGer~Rvsia~~l~~--------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~ 101 (546)
..+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||++++|.+ .....+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4578899999999999999995 8999999999999999999999999999998999999999974 445555
Q ss_pred cCeEEEEeC
Q 009019 102 FDRLYLLSG 110 (546)
Q Consensus 102 ~D~v~lL~~ 110 (546)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666653
No 417
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=1e-09 Score=111.26 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=63.4
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009019 32 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
.+-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+. .++.+++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCc-hhccchh
Confidence 3457999999999999985 6999999999999999999999999998763 34 4555542 4566776
Q ss_pred ---CeEEEEeCCeE
Q 009019 103 ---DRLYLLSGGKT 113 (546)
Q Consensus 103 ---D~v~lL~~G~~ 113 (546)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 418
>PRK01156 chromosome segregation protein; Provisional
Probab=98.98 E-value=3.1e-09 Score=124.97 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=66.8
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCCchHHHhh
Q 009019 31 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 101 (546)
Q Consensus 31 ~~~~lSgGer~Rvsi------a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~-g-~tvi~~~H~p~~~i~~~ 101 (546)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .|+|++||++ +....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 467899999999976 488899999999999999999999999999998754 33 3 4899999996 35689
Q ss_pred cCeEEEEe
Q 009019 102 FDRLYLLS 109 (546)
Q Consensus 102 ~D~v~lL~ 109 (546)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 419
>PRK15066 inner membrane transport permease; Provisional
Probab=98.96 E-value=2.1e-07 Score=93.59 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHH----Hhhh-hhh
Q 009019 223 LMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM----SIGG-FPS 296 (546)
Q Consensus 223 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~----~~~~-~p~ 296 (546)
++-+..+.+|.++...||+.. ...-+++.++..+++|.++-....+..+. .-..|++.+...+. ++.. -..
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~---~y~~fl~pGll~~~~~~~~~~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF---SYMQFIVPGLIMMSVITNSYSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999854 33334555566666666653210110111 11223322222221 1111 122
Q ss_pred HHhhh--HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 297 FVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 374 (546)
Q Consensus 297 ~~~er--~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~ 374 (546)
+.+++ +...|=+. ---+...+.+++++...-..++..++...+.+...|.+... ...+...+++...+....+++
T Consensus 84 i~~~~~~~~~~~l~v-tp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNIEELLV-SPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33333 11111111 23477889999999887666666666655555555665432 222222222222223334788
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHH
Q 009019 375 IASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGE 454 (546)
Q Consensus 375 i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~ 454 (546)
++.+.++..-...+.+.+..+++..||.+-+.+.+|+ |..++.+++|.+|..|++-..-+
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~------------------ 220 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL------------------ 220 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc------------------
Confidence 8888888777677777788888899999999999997 54458999999999987753211
Q ss_pred HHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009019 455 YVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 498 (546)
Q Consensus 455 ~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~ 498 (546)
|.+ +.+.|.++++++++.+++..++....|..++.+
T Consensus 221 -------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 221 -------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred -------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 111 123588899999999988888887777666554
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.2e-09 Score=111.34 Aligned_cols=93 Identities=27% Similarity=0.404 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009019 9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi 88 (546)
.+...|-.+||...++|+ .++.||||||-||.+|.--+..|++|||||||++||..+...+-+.+.+. ...||
T Consensus 683 ~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi 755 (807)
T KOG0066|consen 683 EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVI 755 (807)
T ss_pred HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEE
Confidence 345677889999999885 57889999999999999999999999999999999999988888877766 35799
Q ss_pred EEecCCchHHHhhcCeEEEEe
Q 009019 89 ASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 89 ~~~H~p~~~i~~~~D~v~lL~ 109 (546)
+++|+-. -+.+--..+.++.
T Consensus 756 ~VsHDeR-Li~eT~C~LwVvE 775 (807)
T KOG0066|consen 756 MVSHDER-LIVETDCNLWVVE 775 (807)
T ss_pred EEecccc-eeeecCceEEEEc
Confidence 9999943 3434344455554
No 421
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.91 E-value=2.9e-09 Score=101.02 Aligned_cols=110 Identities=26% Similarity=0.314 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t 86 (546)
+|-+++++.|++.- .|+.+.+|-||||||.|++-|++--++|+|||-|-.||..++.++++.||+-++ .|.|
T Consensus 128 ~Rre~LI~iLDIdl-------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 128 ERREKLIDILDIDL-------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred hHhhhhhhheeccc-------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 34456666666532 234566999999999999999999999999999999999999999999999986 6999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009019 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 125 (546)
|+..||- -.-+.....++..++.|+++-.-+.++..++
T Consensus 201 IVYATHI-FDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 201 IVYATHI-FDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred EEEEeee-ccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 9999998 4678889999999999999876665555443
No 422
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=2.3e-09 Score=130.34 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhh
Q 009019 33 RGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 33 ~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-----~g~tvi~~~H~p~~~i~~~ 101 (546)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||+++|++ ..+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence 469999999 99999999999999999999999999999999999988742 478999999995 667665
Q ss_pred c
Q 009019 102 F 102 (546)
Q Consensus 102 ~ 102 (546)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 423
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.90 E-value=2.1e-09 Score=110.59 Aligned_cols=109 Identities=25% Similarity=0.314 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCC
Q 009019 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~-l~~~g~ 85 (546)
.+.++..++.+.|.+.-.-.=|+-..-.||.|||||++.-.+++-+-+|+++||=-+..||.=+..+.+.+-. +.++|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 3567888888888765444334434567999999999999999999999999999999999999999987655 566899
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G 117 (546)
||+.++|| +.-|..+||++.+++|+++..-
T Consensus 501 TI~aIsHD--d~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 501 TIFAISHD--DHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEEEecC--chhhhhHHHHHHHhcCceeecc
Confidence 99999999 4679999999999999998653
No 424
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.85 E-value=3.9e-09 Score=127.03 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=66.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009019 31 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
.+..||||||+|++||++++ ..|++++|||||+|||+.+...+.+.|+.+++. .++|+++|++. ....+|+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChh--HHHHhhhHe
Confidence 56789999999999999985 567999999999999999999999999999754 78999999973 457899998
Q ss_pred EEe
Q 009019 107 LLS 109 (546)
Q Consensus 107 lL~ 109 (546)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.83 E-value=8.3e-09 Score=100.03 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009019 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..++++++ +++.+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|+++|++ ++.+.+|++..+..|
T Consensus 90 s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~ 166 (202)
T cd03243 90 STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNL 166 (202)
T ss_pred eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence 34555555 5777788899999999999999999999888865 4677777789999999984 677889999999999
Q ss_pred eEEEecChhH
Q 009019 112 KTVYFGETSA 121 (546)
Q Consensus 112 ~~v~~G~~~~ 121 (546)
++...++.++
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 9998886543
No 426
>PRK00064 recF recombination protein F; Reviewed
Probab=98.82 E-value=9.8e-09 Score=108.39 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=66.2
Q ss_pred ccCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009019 31 HLRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~ 101 (546)
....+|+||+|++.+|..|+ .+|+|++||||+++||+..+..+++.++++ +..+++|+|++ ..+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhh
Confidence 44578999999999999886 699999999999999999999999988765 35788888885 455555
Q ss_pred c--CeEEEEeCCeE
Q 009019 102 F--DRLYLLSGGKT 113 (546)
Q Consensus 102 ~--D~v~lL~~G~~ 113 (546)
+ +++..+.+|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57899999986
No 427
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2e-09 Score=111.60 Aligned_cols=105 Identities=27% Similarity=0.415 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
..++.++|.-||.+. ..++ ....+|||-|-|||+||+|..+|.+|.|||||+.||-.+...+-+.|+.+.+
T Consensus 389 EarARRILAGLGFskEMQ~r-----Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK--- 460 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQER-----PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK--- 460 (807)
T ss_pred hhHHHHHHhhcCCChhHhcC-----CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---
Confidence 345667788888763 3444 4457999999999999999999999999999999999999999999999874
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEE-ecChh
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVY-FGETS 120 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~-~G~~~ 120 (546)
|.++++|+ ...+-..|..|+.|++-+.-| .|...
T Consensus 461 TLLIVSHD-QgFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 461 TLLIVSHD-QGFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred eeEEEecc-cchHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999 578889999999998777644 46544
No 428
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.7e-08 Score=118.62 Aligned_cols=78 Identities=29% Similarity=0.359 Sum_probs=67.1
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHH
Q 009019 32 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 98 (546)
Q Consensus 32 ~~~lSgGer~------Rvsia~~l~~~-----P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~-tvi~~~H~p~~~i 98 (546)
+..||||||+ |++++++++.+ | +++++||||+|||+.....+.+.|+.++..|. +||++||++ +.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999888864 3 67999999999999999999999999987664 899999996 34
Q ss_pred HhhcCeEEEEeCC
Q 009019 99 FELFDRLYLLSGG 111 (546)
Q Consensus 99 ~~~~D~v~lL~~G 111 (546)
...+|+++.+.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5789999999643
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.76 E-value=5.9e-09 Score=99.75 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
..+|+|++|...+. ..+++|+++++|||++|+|+.....+. ..++.+.++ |.++|++||++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 35777766533333 234599999999999999999888875 556778774 89999999995 68888876444445
Q ss_pred CeEEEe
Q 009019 111 GKTVYF 116 (546)
Q Consensus 111 G~~v~~ 116 (546)
++..+.
T Consensus 137 ~~~~~~ 142 (185)
T smart00534 137 LHMSAD 142 (185)
T ss_pred EEEEEE
Confidence 554443
No 430
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.76 E-value=1.3e-08 Score=122.49 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=68.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009019 31 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
.+..||||||++++||..++. .|++++||||++|||+.++..+.++|+.+++. .++|++||++ .....+|+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcH--HHHHhcceeE
Confidence 456899999999999999985 67999999999999999999999999998754 7899999996 4679999999
Q ss_pred EEeC
Q 009019 107 LLSG 110 (546)
Q Consensus 107 lL~~ 110 (546)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8863
No 431
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.69 E-value=5e-08 Score=104.95 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009019 7 RTLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++.+.|+.++|.|..++.=| -+....||+||+||++.||.+.++|++-+|||.||.+|......+.+.+++.
T Consensus 537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 4677888888888877655322 1234579999999999999999999999999999999999988888776654
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeC-CeE
Q 009019 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKT 113 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~~ 113 (546)
|.|.|.+.|.++ +.+.-|.++-|++ |+.
T Consensus 617 ---giT~iSVgHRkS--L~kfHd~~L~~~g~g~w 645 (659)
T KOG0060|consen 617 ---GITFISVGHRKS--LWKFHDYVLRMDGRGSW 645 (659)
T ss_pred ---CCeEEEeccHHH--HHhhhhEEEEecCCCce
Confidence 899999999863 6677788888874 443
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.61 E-value=2.8e-07 Score=90.27 Aligned_cols=88 Identities=31% Similarity=0.425 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.++
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~ 189 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ 189 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445556666665432 49999999999987764 356899999999999999999999999999754
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 84 GRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
.-+|++||++ ++++.+|+.+.+.
T Consensus 190 -~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 -SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -cccccccccc--ccccccccccccc
Confidence 6788999984 7899999988774
No 433
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.57 E-value=1.6e-07 Score=97.50 Aligned_cols=100 Identities=29% Similarity=0.390 Sum_probs=83.7
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q 009019 10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVI 88 (546)
Q Consensus 10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi 88 (546)
..++++..||.+-.-- ....+.||-|||.|+.||..+..+|++++.||--+.||..++..+.+-+.++++ .|.|.+
T Consensus 486 AveILnraGlsDAvly---Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAVLY---RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhhhh---hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 4578888898753211 124568999999999999999999999999999999999999999999999997 599999
Q ss_pred EEecCCchHHHhh-cCeEEEEeCCeE
Q 009019 89 ASIHQPSSEVFEL-FDRLYLLSGGKT 113 (546)
Q Consensus 89 ~~~H~p~~~i~~~-~D~v~lL~~G~~ 113 (546)
+++|.| +-+-++ =|.++++.-|.+
T Consensus 563 vvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 563 VVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred EEecCH-HHHhccCCceeEEeecccc
Confidence 999997 445555 588888876654
No 434
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.2e-07 Score=100.17 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009019 33 RGISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~---------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
.-+|.||+|++.+|..|+. +|+||+||||+++||+..+..+++.|++. |.+|++|+|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence 4589999999999999999 99999999999999999999999999764 67999999986
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.54 E-value=1.3e-07 Score=98.42 Aligned_cols=99 Identities=28% Similarity=0.354 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009019 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++..+++++.+.|.+..|+-+. .|||||-||.+||++-+.+.++.++|||.+-||...+..--..++.+....+
T Consensus 190 ~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~ 264 (592)
T KOG0063|consen 190 ERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDR 264 (592)
T ss_pred hcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCC
Confidence 34466788999999988888554 5999999999999999999999999999999999999999999999999889
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeC
Q 009019 86 TVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
-||++.||. +-.--+.|-+++|.+
T Consensus 265 YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 265 YIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred eEEEEEeec-hHHHhhhcceeEEec
Confidence 999999995 667778999999974
No 436
>PRK14079 recF recombination protein F; Provisional
Probab=98.53 E-value=1.9e-07 Score=98.14 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009019 33 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 103 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 103 (546)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCc
Confidence 347999999999999998 8999999999999999999999998886542 4566656543 5799
Q ss_pred eEEEEeCCeEE
Q 009019 104 RLYLLSGGKTV 114 (546)
Q Consensus 104 ~v~lL~~G~~v 114 (546)
+++.+.+|++-
T Consensus 334 ~~~~~~~~~~~ 344 (349)
T PRK14079 334 LTLRIEAGVFT 344 (349)
T ss_pred eEEEEeccEec
Confidence 99999998864
No 437
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.52 E-value=2.8e-07 Score=108.52 Aligned_cols=87 Identities=33% Similarity=0.358 Sum_probs=74.0
Q ss_pred ccccccCc--ccCCCCHHHHHHHHHHHHHH------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009019 23 ADTVIGNW--HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92 (546)
Q Consensus 23 ~~~~ig~~--~~~~lSgGer~Rvsia~~l~------~~--P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H 92 (546)
.++..|+. .+..|||||+-.++||.+|+ .+ =+.|||||||..||+.+...++++|..+...|.+|+++||
T Consensus 802 ~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH 881 (908)
T COG0419 802 VVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH 881 (908)
T ss_pred EEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 34444433 67889999999988887774 34 5899999999999999999999999999999999999999
Q ss_pred CCchHHHhhcCeEEEEeCC
Q 009019 93 QPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 93 ~p~~~i~~~~D~v~lL~~G 111 (546)
++ ++-+.+|.++.+...
T Consensus 882 ~e--el~e~~~~~i~V~k~ 898 (908)
T COG0419 882 VE--ELKERADVRIRVKKD 898 (908)
T ss_pred hH--HHHHhCCeEEEEEec
Confidence 94 788999999999743
No 438
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.48 E-value=1.8e-05 Score=79.12 Aligned_cols=166 Identities=13% Similarity=0.182 Sum_probs=114.8
Q ss_pred HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q 009019 302 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-SIVP 380 (546)
Q Consensus 302 ~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~-~~~p 380 (546)
..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....+..+...+.+......++|.+++ ....
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444433 556677777777676666666666667777732 223344444455555666667777555 3667
Q ss_pred chHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhh
Q 009019 381 NFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENV 460 (546)
Q Consensus 381 ~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~ 460 (546)
+...+..++..+..++..++|.+.+.+.+|+ |..++.++.|.+|+.+++-.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~----------------------- 250 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLG----------------------- 250 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhC-----------------------
Confidence 7888888888888899999999999999997 544588999999999987754321
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009019 461 FQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 496 (546)
Q Consensus 461 ~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~ 496 (546)
+.. ..+.|.++++++++.+++.+++...+|..++
T Consensus 251 -~~~-~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 251 -GWR-NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred -CCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 1127888999999999999999888876654
No 439
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.44 E-value=4.3e-07 Score=88.33 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009019 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
..+|+|++|+ +.+..++++|+++++|||++|+|+.....+. ..++.+.+.|.++|++||+. ++.+..
T Consensus 90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 4588888865 5556788999999999999999998876664 46778888899999999984 444443
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.42 E-value=1.2e-06 Score=84.96 Aligned_cols=71 Identities=24% Similarity=0.171 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhh--cCeEEEE
Q 009019 37 GGERRRVSIALEILM--RPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL 108 (546)
Q Consensus 37 gGer~Rvsia~~l~~--~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~--~D~v~lL 108 (546)
..|.+|+.-+.+.+. +|+++++|||++|+|+..+..+.. .++.+.+.|.|+|+++|++ ..+..+ .+++..+
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 356677777777777 999999999999999999988764 7888888899999999996 455444 3445443
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.40 E-value=7.4e-07 Score=84.57 Aligned_cols=80 Identities=20% Similarity=0.117 Sum_probs=65.7
Q ss_pred cccCCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch----
Q 009019 30 WHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPSS---- 96 (546)
Q Consensus 30 ~~~~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD---~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~---- 96 (546)
..+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 455678999988 4444444567999999999999999 888888899999999889999999998543
Q ss_pred ----HHHhhcCeEEEEe
Q 009019 97 ----EVFELFDRLYLLS 109 (546)
Q Consensus 97 ----~i~~~~D~v~lL~ 109 (546)
.+..++|.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 2678899999886
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.33 E-value=1.6e-06 Score=84.46 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=54.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009019 32 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
...+|.|+||.+.+...+...+ .++++|||-++|+|..+..+++.|+.+++.+.-+|+|||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 4567999999999999988776 89999999999999999999999999887778999999987
No 443
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.31 E-value=4.5e-07 Score=96.62 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCcccccccccC----cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009019 8 TLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~----~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+..+.+++.+.|++...+-.|= ....-||||||||+++||.+-++|+.-+|||.||...+.....+.+..|. .
T Consensus 582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~ 658 (728)
T KOG0064|consen 582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A 658 (728)
T ss_pred HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence 4466778888888776665441 23346999999999999999999999999999999988877777776554 4
Q ss_pred CCEEEEEecCCc
Q 009019 84 GRTVIASIHQPS 95 (546)
Q Consensus 84 g~tvi~~~H~p~ 95 (546)
|.+.+.++|+|+
T Consensus 659 gi~llsithrps 670 (728)
T KOG0064|consen 659 GISLLSITHRPS 670 (728)
T ss_pred CceEEEeecCcc
Confidence 899999999995
No 444
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=106.60 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=52.8
Q ss_pred cCCCCHHHHHHHH----HHHH--------HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009019 32 LRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 32 ~~~lSgGer~Rvs----ia~~--------l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
..+||||||||+. +|++ +..+|++++|||||+|||+.++..+++.++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 4644 45899999999999999999999999999988 67899999873
No 445
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.26 E-value=1.4e-06 Score=85.45 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=63.4
Q ss_pred CCCCHHHHHH----HHHHHHH--HhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009019 33 RGISGGERRR----VSIALEI--LMRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 33 ~~lSgGer~R----vsia~~l--~~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~ 102 (546)
..+|+|+.+. ..++..+ +++|++++|||| |+++|..+. ....++.+.+. +.++|++||+. ++.++.
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~ 159 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE 159 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence 3467776554 2355544 569999999999 888887552 23455556665 89999999994 788899
Q ss_pred CeEEEEeCCeEEEecChhHH
Q 009019 103 DRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 103 D~v~lL~~G~~v~~G~~~~~ 122 (546)
|++-.+.+|++...+..+++
T Consensus 160 ~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 160 GKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hcCCCeEEEEEEEEeeCCeE
Confidence 99888889998887766554
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.24 E-value=1.5e-06 Score=100.20 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=65.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009019 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++ .......|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 456899999999999988 8999999999999999999998865 6778888899999999995 3333444544443 4
Q ss_pred CeEEEe
Q 009019 111 GKTVYF 116 (546)
Q Consensus 111 G~~v~~ 116 (546)
+.+.++
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555554
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.22 E-value=1.5e-06 Score=90.81 Aligned_cols=95 Identities=23% Similarity=0.392 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Q 009019 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~g~t 86 (546)
+-+.++++-|.+++..|+-+ .+|||||.|||++|..|-..+++.+.|||.+-||+.++..--+.+++.- +..+|
T Consensus 435 qF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt 509 (592)
T KOG0063|consen 435 QFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT 509 (592)
T ss_pred HHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch
Confidence 45677888888888888855 5799999999999999999999999999999999999999999999864 55789
Q ss_pred EEEEecCCchHHHhhcCeEEEE
Q 009019 87 VIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL 108 (546)
-.++.|+- --.--++||+++.
T Consensus 510 afvVEhdf-ImaTYladrvivf 530 (592)
T KOG0063|consen 510 AFVVEHDF-IMATYLADRVIVF 530 (592)
T ss_pred hhhhhhHH-HHHHhhcceeEEE
Confidence 99999994 3344578888654
No 448
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.15 E-value=4.9e-06 Score=70.13 Aligned_cols=49 Identities=39% Similarity=0.480 Sum_probs=37.7
Q ss_pred ccCCCCHHHH-HHHHHHHHHH------h------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009019 31 HLRGISGGER-RRVSIALEIL------M------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 31 ~~~~lSgGer-~Rvsia~~l~------~------~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
...++||||| ..+.++..++ . .|++++||||+++||+.....+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3457999999 4455544432 2 3799999999999999999999999875
No 449
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.12 E-value=5.3e-06 Score=81.27 Aligned_cols=61 Identities=30% Similarity=0.276 Sum_probs=51.1
Q ss_pred CCC--HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCC
Q 009019 34 GIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 94 (546)
Q Consensus 34 ~lS--gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~---g~tvi~~~H~p 94 (546)
++| .-|.||+++++.++.+|+++++|||++|+|+.....+ ...++++.+. +.++|++||++
T Consensus 88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 445 5678999999999999999999999999999875555 5688888764 35899999995
No 450
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.10 E-value=4.8e-05 Score=70.49 Aligned_cols=128 Identities=12% Similarity=-0.001 Sum_probs=87.8
Q ss_pred hhHHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 300 DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGF--IHYLFFVLCLYASVAVVESLMMAIAS 377 (546)
Q Consensus 300 er~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~--~~f~~f~l~l~l~~~~~~sl~~~i~~ 377 (546)
|+.++.|-+..-. +.+.++++|++...-..++..++..++.+. .|.+.+. ...+.+++...+.......++..++.
T Consensus 17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~ 94 (152)
T TIGR01248 17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL 94 (152)
T ss_pred HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777776655 789999999999998988888877777754 4877653 22222222222223333344555554
Q ss_pred hccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHH
Q 009019 378 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY 432 (546)
Q Consensus 378 ~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~ 432 (546)
..++..... ....+..+++..+|.+.+.+++|+ |..|+.+++|.+|+.+++-
T Consensus 95 ~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 95 RKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 455544333 346667777888899999999997 7667999999999999875
No 451
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.10 E-value=0.00078 Score=67.20 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHH
Q 009019 227 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQ 305 (546)
Q Consensus 227 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~ 305 (546)
+.+.||.++...|.|..+..-.+..++.|+. ...|.+. +....+..+.... +... .+.-+..+|.. =+..+.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--f~~~--~~~~~~~~p~l--~~~~ia 74 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLF-LWVFPGDFNILDYGYADLTPF--FSLA--PWVFLFLIPAI--TMRSFA 74 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHhhhhhHHhcCcchHHHH--HHHH--HHHHHHHHHHH--HHHHHH
Confidence 4678999999999998887666655555533 2222110 0000111111111 1110 01111112222 236677
Q ss_pred HHhhCCCc--------chHHHHHHHHHHHHhHHHHHHH---HHhhhhhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 009019 306 RERLNGHY--------GVTAFVIGNTLSAMPFLIMITF---ISGTICYFMVR--LHPGFIHYLFFVLCLYASVAVVESLM 372 (546)
Q Consensus 306 RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~---if~~i~Y~m~G--l~~~~~~f~~f~l~l~l~~~~~~sl~ 372 (546)
+||.+|.. +...++++|.++-+-..++..+ ++....++... -..+...++...+..++...+..++|
T Consensus 75 ~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig 154 (240)
T TIGR03518 75 EERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIG 154 (240)
T ss_pred HHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888765 4678899999988755443332 12222111111 12245554434444455556777999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCC--CccccccccccccHHHHH
Q 009019 373 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI--PKPVWRYPMSYLSFHYWA 427 (546)
Q Consensus 373 ~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i--P~~~W~~~~~yiS~~~Ya 427 (546)
.++++++.+...|..++.++... ++.|+-. ..++ |+ |..|+.|+||..|-
T Consensus 155 ~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~--~~~~l~~~sp~~~~ 206 (240)
T TIGR03518 155 LFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGG--SAYTISELGLSYHY 206 (240)
T ss_pred HHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-Hhhhcchh--HHHHHHHcCHHHHH
Confidence 99999999988886655443222 2222211 2223 43 43448888886664
No 452
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.06 E-value=5.6e-06 Score=71.56 Aligned_cols=65 Identities=11% Similarity=0.244 Sum_probs=54.5
Q ss_pred CCCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhc
Q 009019 446 PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 511 (546)
Q Consensus 446 ~~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 511 (546)
+|..+++|+++|+..|++..++ +|+|++|+++++++|.++.++++.+....+.....++.+|+.+
T Consensus 26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r~~~ 90 (103)
T PF06422_consen 26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKRGKA 90 (103)
T ss_pred CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeCCcc
Confidence 4557889999999779997654 9999999999999999999999999888887766666666544
No 453
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=1.1e-05 Score=76.11 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009019 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
..+||+|+.+..+.+..+.+|+++++||| ..++..+ ..+.+.+.++.+.|.++|+++|. ..+....|++..+.+|+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~--~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHR--RSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECc--hhhHHHHHHHhccCCcE
Confidence 35899999999999999999999999995 2233333 44567777777778999999998 35678899999999999
Q ss_pred EEEe
Q 009019 113 TVYF 116 (546)
Q Consensus 113 ~v~~ 116 (546)
+...
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 8765
No 454
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.97 E-value=1.2e-05 Score=92.62 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=56.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCC
Q 009019 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~g~tvi~~~H~p 94 (546)
....+|+|+++++.|...+ .+|+++++|||++|+|+.....+ ...++.+.+.|.++|++||++
T Consensus 382 ~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 382 NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 3456899999999998776 89999999999999999999999 578888888899999999995
No 455
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.86 E-value=1.8e-05 Score=77.19 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 009019 38 GERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 38 Ger~Rvsia~~l~~~P~il~LDEPt-----sgLD~~~~~~v~~~L~~l~~ 82 (546)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 456
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.78 E-value=0.0067 Score=60.92 Aligned_cols=95 Identities=19% Similarity=0.340 Sum_probs=56.9
Q ss_pred HHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHH--HHHHHh--h-hhhcc-ccccCCHHHHHHHHHHHHHHHH-
Q 009019 302 KVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIM--ITFISG--T-ICYFM-VRLHPGFIHYLFFVLCLYASVA- 366 (546)
Q Consensus 302 ~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l--~~~if~--~-i~Y~m-~Gl~~~~~~f~~f~l~l~l~~~- 366 (546)
..+.+|+++|. ++...++++|.++.+...++ ...+.+ + ..++. .|.+.+...+....+.......
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 45677777763 67889999999999887432 111111 1 11222 2444555554433332222222
Q ss_pred --HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 009019 367 --VVESLMMAIASIVPNFLMGIITGAGIQGIF 396 (546)
Q Consensus 367 --~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~ 396 (546)
+..++++++++++++...|...+.++....
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 457899999999998888877776655444
No 457
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.77 E-value=4.4e-05 Score=88.90 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=61.3
Q ss_pred HhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hhcCeEEEEeCCeEEEecCh
Q 009019 50 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 50 ~~~P~il~LDEPtsgL-D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~---------~~~D~v~lL~~G~~v~~G~~ 119 (546)
..+|.++++|||+.+| |+..+..+.+.++++.+.|.+++++||+| +++. +.||.+++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~-~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSI-SDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 79999999999999999999999999997 4554 68999999999998777644
No 458
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.71 E-value=8.6e-05 Score=75.29 Aligned_cols=68 Identities=31% Similarity=0.354 Sum_probs=47.5
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-H-----------HhhcCeEEEEeCCe
Q 009019 45 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGK 112 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~-i-----------~~~~D~v~lL~~G~ 112 (546)
....+..+|+++++|||++ ...+...++.+ +.|.|+|+|+|++..+ + ...|||+++|++|+
T Consensus 187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 3344457999999999974 23344444544 4699999999986332 2 26699999999887
Q ss_pred EEEecChhH
Q 009019 113 TVYFGETSA 121 (546)
Q Consensus 113 ~v~~G~~~~ 121 (546)
..|.+++
T Consensus 260 --~~g~~~~ 266 (270)
T TIGR02858 260 --GPGTVEA 266 (270)
T ss_pred --CCCceee
Confidence 5666544
No 459
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.025 Score=57.20 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHH-----Hhhhhhh
Q 009019 223 LMQAFTLTKRSFVNMSRDFG-YYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM-----SIGGFPS 296 (546)
Q Consensus 223 ~~Q~~~L~~R~~~~~~Rd~~-~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~-----~~~~~p~ 296 (546)
+..++.|.+|.++.-.|+.. -...-++.-+++.++.+.+|-.+-... ..+ -..+...+..... ...+..+
T Consensus 17 ~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~--~~~~l~~G~~~w~f~~~~i~~~~~s 92 (263)
T COG1682 17 RRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLN--FLAYLLAGLILWFFFSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55688899999998766642 233345555566666666664432221 001 1122222221111 1122344
Q ss_pred HHhhhHHHHHHhhCCCc-chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 297 FVEDMKVFQRERLNGHY-GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 375 (546)
Q Consensus 297 ~~~er~vf~RE~~~g~Y-~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i 375 (546)
+.+...++++ .+ ++..+.+++++.++--.++..++....+-+.-+.. ++ +++.+...+.+..+.+.++++++
T Consensus 93 ~~~n~~li~k-----~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 93 VVANAALIKK-----INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred hhhhHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455443 44 88999999999998776666655555544444443 33 44444445555666677888888
Q ss_pred HHhccch-HHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHh
Q 009019 376 ASIVPNF-LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQND 435 (546)
Q Consensus 376 ~~~~p~~-~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~ne 435 (546)
|.++.-+ +.+.+++.+ ..+++..+|.+=+.+.+|.. |++ +.++||+.+-+|+.=..-
T Consensus 166 a~l~v~fRD~~~i~~~v-~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~R~~~ 223 (263)
T COG1682 166 ASLGVRFRDLGQILGVV-LQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESFRAPL 223 (263)
T ss_pred HhHhhhcccHHHHHHHH-HHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHHHHHH
Confidence 8876433 445555544 44556677888889999974 655 888999999998776543
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.61 E-value=0.00014 Score=72.36 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCeEEEeCCCC--
Q 009019 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS-- 63 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~----------------~l~~~P~il~LDEPts-- 63 (546)
+.++.++|+..+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 34567788888888888766555433 2245555555443 235799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009019 64 ----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 64 ----gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
.+|+.....+++.|+++++ .|.||+++.|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 4799999999999999986 589999999986
No 461
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.50 E-value=0.00025 Score=69.74 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCC
Q 009019 38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 94 (546)
Q Consensus 38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~-g~tvi~~~H~p 94 (546)
.|-++++-....+++|+++++|||.+|+|+.....+... ++.+.+. |.++|++||++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 567777777777889999999999999999999999888 7888875 89999999995
No 462
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.47 E-value=0.00029 Score=69.85 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHh
Q 009019 35 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFE 100 (546)
Q Consensus 35 lSgGer~Rvsia~~l~----~~P~il~LDEPtsgL----D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~------~i~~ 100 (546)
+|+++.++..+.+.+- .+|+++++||||+++ |+....++.+.++++++.|.|+++++|+... .+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 6777655544433332 369999999999999 8888889999999998888888887665321 1244
Q ss_pred hcCeEEEEe
Q 009019 101 LFDRLYLLS 109 (546)
Q Consensus 101 ~~D~v~lL~ 109 (546)
++|-|+.|+
T Consensus 176 ~~DgvI~L~ 184 (230)
T PRK08533 176 AATMLIRLE 184 (230)
T ss_pred eeeEEEEEE
Confidence 567777776
No 463
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=5e-05 Score=76.10 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred ccCCCCHHH--------HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009019 31 HLRGISGGE--------RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 31 ~~~~lSgGe--------r~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~-v~~~L~~l~~~g~tvi~~~H~p~~~i~~~ 101 (546)
..+.+|||| +||+++|+.+..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+. .....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCC
Confidence 345689999 9999999999899999999 999999755554 55 566665678999999995 34688
Q ss_pred cCeEEEEeCCeE
Q 009019 102 FDRLYLLSGGKT 113 (546)
Q Consensus 102 ~D~v~lL~~G~~ 113 (546)
+|.|.+|..|..
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999986
No 464
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.37 E-value=0.00081 Score=66.55 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcC
Q 009019 35 ISGGERRRVSIALEILM--RPRLLFLDEPTSG---LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFD 103 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~--~P~il~LDEPtsg---LD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~------~i~~~~D 103 (546)
.+.++++.+.....++. +|+++++||||+. .|.....++++.++.+++.|.|+++++|++.. .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 46788999999999987 9999999999964 55555566666677777789999999998642 1566778
Q ss_pred eEEEEeC
Q 009019 104 RLYLLSG 110 (546)
Q Consensus 104 ~v~lL~~ 110 (546)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 8877764
No 465
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.00058 Score=67.33 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009019 38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~ 102 (546)
.|-+|++-...-+++|+++++|||.+|.|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 477888877777889999999999999998887775 5677788775 89999999996 444444
No 466
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.21 E-value=0.001 Score=60.62 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009019 35 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPts----------gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
-+.++.++...+.+...+|+++++||++. +.|......+.+++....+.|.|+|+++|.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666667778888888999999999994 4555556666666656655799999999997543
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.07 E-value=0.001 Score=78.09 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.8
Q ss_pred HHHHHHhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--hcCeEEEEeCCeEE
Q 009019 45 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 114 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPtsgL-D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~--~~D~v~lL~~G~~v 114 (546)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+| .++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~-~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSL-SDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 79999999999999999999999999997 55654 23333333444443
No 468
>PF13175 AAA_15: AAA ATPase domain
Probab=97.03 E-value=0.0015 Score=69.63 Aligned_cols=64 Identities=28% Similarity=0.376 Sum_probs=54.7
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC-CC---eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009019 31 HLRGISGGERRRVSIALEIL------MR-PR---LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~------~~-P~---il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
.....|.|+++.+.++..+. .+ +. |+++|||=+.|.|..+..+++.|+++++ .+..||+|||.|
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp 412 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSP 412 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCCh
Confidence 45678999999988877653 12 22 9999999999999999999999999997 678999999987
No 469
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=96.99 E-value=0.00017 Score=73.62 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHhhhH--HHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhcccc---ccCCHHHHHHHHHHHHHHHHHHHHH
Q 009019 297 FVEDMK--VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR---LHPGFIHYLFFVLCLYASVAVVESL 371 (546)
Q Consensus 297 ~~~er~--vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~G---l~~~~~~f~~f~l~l~l~~~~~~sl 371 (546)
..+||. +..|-+..|. +...|++++.+..+...++..++...+ +.| +..+ .+...++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence 345554 4555556664 889999999999999988888777664 334 4333 4444445566667778889
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCc
Q 009019 372 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKI 451 (546)
Q Consensus 372 ~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~ 451 (546)
+.+++.++++...+..++..+..+++.++|.+.+.+++|+ ++.+ +.++.|..|..+++..--
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~P~~~~~~~~~~~~---------------- 317 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQW-ISSFLPFYWFIQGLRNII---------------- 317 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHHH-HHHHhhHHHHHHHHHHHH----------------
Confidence 9999999999988887777776655555666666777776 3444 666778888876654321
Q ss_pred CHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHH
Q 009019 452 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFF 488 (546)
Q Consensus 452 ~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~ 488 (546)
+|. ..+.|.++++++++.+++.+++.
T Consensus 318 ---------~~~--~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 318 ---------YGD--WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp -------------------------------------
T ss_pred ---------Hhc--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 11256677788777777766553
No 470
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.88 E-value=0.0018 Score=61.40 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=54.2
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009019 27 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 27 ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
.|+.....-|.||-=- .|-..-.++.-|.+||||-++|.+.-+..++..|+++++.|.-+|+.||-|
T Consensus 122 ~~~~sLh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 122 YGGRSLHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred cCCcchhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 3443445579999533 232333567889999999999999999999999999999999999999988
No 471
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=96.85 E-value=0.35 Score=48.69 Aligned_cols=247 Identities=15% Similarity=0.217 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-cCCCC---hh-hHHhhhhhHHHHHHHHHHHHhhhhhhHHh
Q 009019 225 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL-NVGTG---YN-SILARGSCASFVFGFVTFMSIGGFPSFVE 299 (546)
Q Consensus 225 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~-~l~~~---~~-~i~~r~~~lf~~~~~~~f~~~~~~p~~~~ 299 (546)
++..+.++.+....|+|..+..-....+..++.....+. ..... .. .-+.. ....+......+.. +-...-
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~l 78 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLP---LLAILL 78 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHH---HHHHHH
Confidence 577888999999999998877776666666666666662 11111 10 11111 11111111111111 111112
Q ss_pred hhHHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHh---hhhhcccccc---CCHHHHHHHHHHHHHHH
Q 009019 300 DMKVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISG---TICYFMVRLH---PGFIHYLFFVLCLYASV 365 (546)
Q Consensus 300 er~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~---~i~Y~m~Gl~---~~~~~f~~f~l~l~l~~ 365 (546)
--.++.+|+.+|. .+..--+++|.++-+-..++..++.. ...+...|.. .+..++..+.....+..
T Consensus 79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (278)
T COG1277 79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYG 158 (278)
T ss_pred ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 3356777777775 45566778888888766555554444 1233333433 33445566666666677
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccC------CCCCCccccccccccccHHHHHHHHHHHHhhCCC
Q 009019 366 AVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRL------PNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGL 439 (546)
Q Consensus 366 ~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~------~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~ 439 (546)
.+..+++.+++...++...+..++..+...+.+..+.... ...-| +.-.+.+.+|.++.-+.........
T Consensus 159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~- 234 (278)
T COG1277 159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQS- 234 (278)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccc-
Confidence 7777888999999998877777766655444433332211 11111 1011445566666655444322110
Q ss_pred cccCCCCCCCCcCHHHHHhhhcCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009019 440 WFDNQSPDLPKIPGEYVLENVFQI-DVRRSKWIDLSVIFSMIISYRIIFFVMIKIS 494 (546)
Q Consensus 440 ~f~~~~~~~~~~~G~~vL~~~~~~-~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~ 494 (546)
.+.. . .++. +.....|.+..+++++.+++..++++..+.+
T Consensus 235 ~~~~--------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~ 275 (278)
T COG1277 235 GFSD--------S-------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR 275 (278)
T ss_pred cccc--------c-------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0000 0 0111 1123479999999999999999888665543
No 472
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=96.85 E-value=0.44 Score=48.27 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc
Q 009019 364 SVAVVESLMMAIASIV---PNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW 440 (546)
Q Consensus 364 ~~~~~~sl~~~i~~~~---p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~ 440 (546)
....+.++|+++|++. |+..- ++. .+..+++..+|.+=+.+.+|+. |++ +.+.||+.+.+|+.=..-+.|.
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~--i~~-~~l~~lf~~SpI~y~~~~vp~~-~~~-il~~NPl~~~ie~~R~~~~~~~- 231 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYK--AVP-VMLRPMFLISAVFYTANELPYS-LLS-IFSWNPLLHANEIVREGMFEGY- 231 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHH--HHH-HHHHHHHHHhhHhhhHHhCcHH-HHH-HHHHCcHHHHHHHHHHHHhcCc-
Confidence 4444557777766654 55443 333 3445566667777677889873 443 5678999999987765444221
Q ss_pred ccCCCCCCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009019 441 FDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE 495 (546)
Q Consensus 441 f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~ 495 (546)
. ..|.+..+++++.++..+++++..|+.+
T Consensus 232 -----------------------~---~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 260 (264)
T PRK15176 232 -----------------------H---SLYLEPFYPLAFSATLFLAGLIFHLICD 260 (264)
T ss_pred -----------------------C---ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122345566666666666766666544
No 473
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.72 E-value=0.12 Score=50.80 Aligned_cols=153 Identities=13% Similarity=0.169 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhh-hhHHHHHHHHHHHHhhhhhhHHhhhHHH
Q 009019 226 AFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMKVF 304 (546)
Q Consensus 226 ~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~-~~lf~~~~~~~f~~~~~~p~~~~er~vf 304 (546)
++.+.||.++.-+|++.....-+...+.+..+.. +-++.+.+....-. |++..+..|....+. -+.|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~---~al~~~~~~l~~~~~gllWi~~lfa~~l~~---------~r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFS---FALGPDPDLLARVAPGLLWIALLFASLLGL---------NRSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---hhcCCchhHHHHHhHHHHHHHHHHHHHHHh---------hHhH
Confidence 4678999999999998765544444333333332 34554443333222 333333322222221 1568
Q ss_pred HHHhhCCCc--------chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009019 305 QRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 376 (546)
Q Consensus 305 ~RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~ 376 (546)
.+|..+|.. ++.+.+++|.++..-+..+..++..-+...+-|++. .....+.+++.+........|-+.+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888762 356799999999987776666555555555556554 3444445555555455555666666
Q ss_pred HhccchHHHHHHHHHH
Q 009019 377 SIVPNFLMGIITGAGI 392 (546)
Q Consensus 377 ~~~p~~~~a~~~~~~~ 392 (546)
+++-+......+.+.+
T Consensus 147 al~~~~r~~~~Ll~lL 162 (215)
T PF03379_consen 147 ALAAGARGREILLPLL 162 (215)
T ss_pred HHHHhccccCHHHHHH
Confidence 6554333333333333
No 474
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.011 Score=64.91 Aligned_cols=75 Identities=31% Similarity=0.497 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009019 33 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
+--||||-=|+.+|...+. +.+.|++||--+|+--..+..|-+.|++|++. .-|+|+||.| .|..++|.=+.+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~-~QVl~VTHlP--QVAa~ad~H~~V 506 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEH-HQVLCVTHLP--QVAAMADTHFLV 506 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcC-ceEEEEecHH--HHHhhhcceEEE
Confidence 4569999999999876653 24589999999999999999999999999874 5799999997 688888887777
Q ss_pred eC
Q 009019 109 SG 110 (546)
Q Consensus 109 ~~ 110 (546)
++
T Consensus 507 ~K 508 (557)
T COG0497 507 EK 508 (557)
T ss_pred EE
Confidence 64
No 475
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.33 E-value=0.0062 Score=47.86 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=40.1
Q ss_pred CCcCHHHHHhhhcCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009019 449 PKIPGEYVLENVFQID-VRRSKWIDLSVIFSMIISYRIIFFVMIKISE 495 (546)
Q Consensus 449 ~~~~G~~vL~~~~~~~-~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~ 495 (546)
...-|+++|+. .|+. ++++.|..+++|+|+.++|.+++.++|.|..
T Consensus 9 ~~tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~ 55 (65)
T PF08370_consen 9 NSTLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLN 55 (65)
T ss_pred CCcHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999998 8884 3578999999999999999999999999843
No 476
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.27 E-value=0.015 Score=59.42 Aligned_cols=67 Identities=30% Similarity=0.487 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHHh--CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009019 33 RGISGGERRRVSIALEILM--RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~--~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
+.||-|+.|-+.++.+|+. .|.+++||||-++|-|..-..+...+++-++++ -|+++||-| +..+.+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~--rLl~~~ 337 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSP--RLLNAV 337 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCH--HHHhhc
Confidence 4899999999999999986 689999999999999999999999999999876 799999975 444443
No 477
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.0028 Score=71.98 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=63.6
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009019 32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
...||||||--|++|.-++. +| +..++||.-++||+..+..|-.++++|+.. .-.|+||-.| ++.+.+|+.+=
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhhc
Confidence 45799999999999888763 56 799999999999999999999999999976 5688999886 78888887653
Q ss_pred E
Q 009019 108 L 108 (546)
Q Consensus 108 L 108 (546)
.
T Consensus 1172 V 1172 (1200)
T KOG0964|consen 1172 V 1172 (1200)
T ss_pred e
Confidence 3
No 478
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.16 E-value=0.0095 Score=68.04 Aligned_cols=58 Identities=26% Similarity=0.260 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Q 009019 32 LRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~ 93 (546)
+..|||||||-+++|-.++- +.++ ++|||++.||+..+..+++ .+..++ .-||+.+|+
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~---~QvIils~d 613 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKAS---HQVLLLSTD 613 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccC---CeEEEEech
Confidence 45799999999877655432 3455 5699999999999999985 666553 456777777
No 479
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.0075 Score=73.30 Aligned_cols=74 Identities=31% Similarity=0.414 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009019 32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
+..||||||=-++||.-++. +| ++.+|||-=++||..+...+.++|++.+ .+.=.|++||++ ..+..+|+++-
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~--~~m~~ad~l~G 1140 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK--GTMEAADRLVG 1140 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh--HHHHHHHHHee
Confidence 45699999999999887753 45 8999999999999999999999999999 556789999985 56788888764
Q ss_pred E
Q 009019 108 L 108 (546)
Q Consensus 108 L 108 (546)
.
T Consensus 1141 V 1141 (1163)
T COG1196 1141 V 1141 (1163)
T ss_pred e
Confidence 4
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.00 E-value=0.00099 Score=73.31 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHH--HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhhc
Q 009019 33 RGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELF 102 (546)
Q Consensus 33 ~~lSgGer~Rvsia--~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~-------i-~~~~ 102 (546)
+.+|+|++|||.|+ .++..+|+.. ...+.++.+.++.+++.|+|+|+++|++... + ..++
T Consensus 114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la 183 (484)
T TIGR02655 114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS 183 (484)
T ss_pred HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence 45788888888888 5555555433 4677888999999998999999999986320 2 5678
Q ss_pred CeEEEEe
Q 009019 103 DRLYLLS 109 (546)
Q Consensus 103 D~v~lL~ 109 (546)
|.|+.|+
T Consensus 184 DgVI~L~ 190 (484)
T TIGR02655 184 DNVVILR 190 (484)
T ss_pred eeEEEEE
Confidence 9999997
No 481
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.93 E-value=0.014 Score=68.24 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=42.1
Q ss_pred HhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009019 50 LMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 95 (546)
Q Consensus 50 ~~~P~il~LDEPtsgLD-~~~~~~v~~~L~~l~~~g~tvi~~~H~p~ 95 (546)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.++++++|.|.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999999999999999973
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.026 Score=61.23 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCHHHHHHHH-----HHHHHHh-CCC-eEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CCC
Q 009019 34 GISGGERRRVS-----IALEILM-RPR-LLFLD-----------------EP--TSGLDSAAAFFVTQTLRCLSR--DGR 85 (546)
Q Consensus 34 ~lSgGer~Rvs-----ia~~l~~-~P~-il~LD-----------------EP--tsgLD~~~~~~v~~~L~~l~~--~g~ 85 (546)
.=|-++|-|.. ||.=+.- +-+ +|++| || |+|+|+.....+.+.++++.+ +|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 34778887743 3333322 334 56788 75 669999999999999999984 675
Q ss_pred -----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009019 86 -----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 86 -----tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
||++.+|+.. + ..+|++..+.+|+++.+++..+
T Consensus 303 IT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 303 ITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred eeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence 9999999964 3 7899999999999999998764
No 483
>PF13166 AAA_13: AAA domain
Probab=95.73 E-value=0.033 Score=64.26 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=55.4
Q ss_pred ccCCCCHHHHHHHHHHHHHH--h-------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCC
Q 009019 31 HLRGISGGERRRVSIALEIL--M-------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS--RDGRTVIASIHQP 94 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~--~-------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~--~~g~tvi~~~H~p 94 (546)
....||-|||+-+++|-=|. . +..++++|.|-|.||......+.+.|+++. ...+-||+-||+.
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 35789999999999986552 3 568999999999999999999999999997 4567899999984
No 484
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.68 E-value=0.011 Score=61.28 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009019 44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
.+..+|-.+|+++++|||.+ .++++.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 45667889999999999996 3456677777644456799999964 56679999999999988888877654
No 485
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.47 E-value=0.041 Score=64.70 Aligned_cols=80 Identities=25% Similarity=0.174 Sum_probs=56.9
Q ss_pred cccccccc--CcccCCCCHHHHHHHHHHHHHH--hCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Q 009019 21 DCADTVIG--NWHLRGISGGERRRVSIALEIL--MRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH 92 (546)
Q Consensus 21 ~~~~~~ig--~~~~~~lSgGer~Rvsia~~l~--~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H 92 (546)
+.--|++| +...+|.|-=+.....++..|- ++++++++||| |+.+|..+ .....++.+.+. |.+++++||
T Consensus 651 d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH 728 (854)
T PRK05399 651 DRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATH 728 (854)
T ss_pred CeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEec
Confidence 33445566 2345677776666666666654 59999999999 88888444 345567777765 589999999
Q ss_pred CCchHHHhhcCe
Q 009019 93 QPSSEVFELFDR 104 (546)
Q Consensus 93 ~p~~~i~~~~D~ 104 (546)
. .++.+++++
T Consensus 729 ~--~el~~l~~~ 738 (854)
T PRK05399 729 Y--HELTELEEK 738 (854)
T ss_pred h--HHHHHHhhh
Confidence 8 477888775
No 486
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.17 E-value=0.027 Score=66.80 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCHHHH------HHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecC
Q 009019 35 ISGGER------RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQ 93 (546)
Q Consensus 35 lSgGer------~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-----~g~tvi~~~H~ 93 (546)
-|.||| =|+++|..+..+..+|-|||||++||-.+..-+...|.++-+ .+.-.|++||+
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 388998 477889999999999999999999999999888888777643 25678889998
No 487
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.98 E-value=3.6 Score=40.89 Aligned_cols=243 Identities=13% Similarity=0.100 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHhccCCCChhhHH---hhhhhHHHHHHHHHHHHhhhhhh
Q 009019 221 SFLMQAFTLTKRSFVNMSRDFG-YYWLRLVIYVVVTICIGTIYLNVGTGYNSIL---ARGSCASFVFGFVTFMSIGGFPS 296 (546)
Q Consensus 221 s~~~Q~~~L~~R~~~~~~Rd~~-~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~---~r~~~lf~~~~~~~f~~~~~~p~ 296 (546)
.+++....+.+=.+..+.--+. ..+.|+ ...+-+++.+.++-.+-++.+.|+ ..-...++..++..-......-.
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l-~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~ 81 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRL-SGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSI 81 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666655554422222 122222 222333444445544433333222 11122333333333222222223
Q ss_pred HHhhhHHHHHHhhCCCcchHHHHHHHHHHHH--------hHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q 009019 297 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAM--------PFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV 368 (546)
Q Consensus 297 ~~~er~vf~RE~~~g~Y~~~~y~la~~l~~l--------P~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~ 368 (546)
+--|+.|-.-|-.-..-++..|...+..+++ |+.++..++|... |.-+-.-.+....+.|.+.+.+....-
T Consensus 82 ~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l-~~~~~~~l~~~~l~~~~l~la~~~~~~ 160 (268)
T COG4587 82 WEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALL-YGAILQFLSPWTLYLFVLALALLFLLR 160 (268)
T ss_pred HHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445556666666555554 4444444443332 221112334444444433332222222
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC
Q 009019 369 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 448 (546)
Q Consensus 369 ~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~ 448 (546)
-.+-..+++.+--..-|+.++....++..+.||.+.|..-.|+ |..-+--..|+-|.+
T Consensus 161 F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~-------------------- 218 (268)
T COG4587 161 FLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLL-------------------- 218 (268)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhh--------------------
Confidence 2222233333333344666777777778889999999988887 421000011111211
Q ss_pred CCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009019 449 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 492 (546)
Q Consensus 449 ~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~ 492 (546)
-+....+-..+. ....|.++++.+++..++-++.-...|
T Consensus 219 --y~P~~llvGk~s---~~~il~al~v~~~Wl~im~~l~~~lWr 257 (268)
T COG4587 219 --YTPVMLLVGKYS---GAQILKALLVQIGWLLIMWLLSRWLWR 257 (268)
T ss_pred --ccHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223221122 234788888888888888777654443
No 488
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.89 E-value=0.059 Score=58.64 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=54.2
Q ss_pred hCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEecChhH
Q 009019 51 MRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVYFGETSA 121 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~-~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~~v~~G~~~~ 121 (546)
.+|++|++|||...+|.. ...++.+++..+.+.|+.+|++++++..++..+.|++. -+..|.++...+++.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 379999999999988765 45678889999888788888877444467766667665 457788888887764
No 489
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.67 E-value=0.059 Score=63.13 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=44.3
Q ss_pred HHhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009019 49 ILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 49 l~~~P~il~LDEPtsgLD-~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
+..+|.++++|||..+|| +..+..+.+.++++.+.|..++++||.| +++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~-~d~~ 689 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSV-EDAS 689 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHH
Confidence 456899999999999999 8889999999999999999999999997 4443
No 490
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.40 E-value=0.023 Score=54.26 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 009019 37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-EVFELFDRLYLLSGG 111 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~-~i~~~~D~v~lL~~G 111 (546)
-|+-.|..+|..+..+|+.+..+| +.+||....++.+.+++..++|.+|++.+|.... .+...||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988777 8999999999999999887667899999998522 367789999877554
No 491
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=94.30 E-value=4.8 Score=37.89 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=49.7
Q ss_pred HHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHhhhhh---ccccc-cCCH---HHHH-HHHHHHHHHH
Q 009019 302 KVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICY---FMVRL-HPGF---IHYL-FFVLCLYASV 365 (546)
Q Consensus 302 ~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y---~m~Gl-~~~~---~~f~-~f~l~l~l~~ 365 (546)
..+.+|+.+|. .+...++.+|.++-.-..++..++...+.+ .+.+. ..+. ..++ .+.+...+..
T Consensus 68 ~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (232)
T PF12730_consen 68 LLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLS 147 (232)
T ss_pred HHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHH
Confidence 35667777776 367889999999998777666655433322 33332 1222 2222 2223333333
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHH
Q 009019 366 AVVESLMMAIASIVPNFLMGIITGA 390 (546)
Q Consensus 366 ~~~~sl~~~i~~~~p~~~~a~~~~~ 390 (546)
.....+ .+++..++|...+..++-
T Consensus 148 ~~~~~~-~~i~~~~~~~~~~i~~~~ 171 (232)
T PF12730_consen 148 LFISLL-LFISSLFRNSIVAIIISI 171 (232)
T ss_pred HHHHHH-HHHHHHHhhHHHHHHHHH
Confidence 334444 777888888766654443
No 492
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.91 E-value=0.067 Score=51.63 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009019 44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
.++++|..+|+++++|||. |..+. +...+.+..|..++.|+|.++ +.+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~----~~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETI----RLALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHH----HHHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5778888999999999996 55543 333345667899999999974 346789887664
No 493
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.88 E-value=0.049 Score=58.77 Aligned_cols=80 Identities=16% Similarity=0.033 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHHHHHH-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009019 32 LRGISGGERRRVSIALEIL-------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~-------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
..+-|.|+|+|+..+...+ .++-++++|+||.+.|+. .++-..+.+....|.+..+.+|. +.+++-+
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~ERa-- 292 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLERS-- 292 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHHHh--
Confidence 4567999999999988877 789999999999999996 55555666666568888888884 3444444
Q ss_pred EEEEeCCeEEEecC
Q 009019 105 LYLLSGGKTVYFGE 118 (546)
Q Consensus 105 v~lL~~G~~v~~G~ 118 (546)
-...+|.+-..+.
T Consensus 293 -g~~~~GSiT~~~t 305 (432)
T PRK06793 293 -GKTQKGSITGIYT 305 (432)
T ss_pred -ccCCCcceEEEEE
Confidence 4457887765554
No 494
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=93.71 E-value=4.6 Score=39.50 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=75.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-ccCCCChhhHHhhhhhHHH-HHHHHHHHHhhhhhhHHhhhHHHHHH
Q 009019 230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY-LNVGTGYNSILARGSCASF-VFGFVTFMSIGGFPSFVEDMKVFQRE 307 (546)
Q Consensus 230 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf-~~l~~~~~~i~~r~~~lf~-~~~~~~f~~~~~~p~~~~er~vf~RE 307 (546)
.+|.++.-+|++.-...=+ +..+++-++| +.++.|.+..+.-...++. +..|....+. -+.|.+|
T Consensus 2 ~~kDl~l~~r~~~~~~~~l----lF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l---------~rlF~~d 68 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPL----WFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSL---------DRLFRDD 68 (211)
T ss_pred cHHHHHHHHcccchHHHHH----HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHH
Confidence 5788888889876544333 3333333333 5566655444444333333 3333333222 2678888
Q ss_pred hhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009019 308 RLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIV 379 (546)
Q Consensus 308 ~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~ 379 (546)
+.||. .+....+++|.++..-+..+.-++..-+.-.+-|++.. ....+.+.+.+-......+|-+.++++
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~--~~~~l~l~LllGt~~Ls~igtl~aALt 146 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP--AWGALALTLLLGTPALSFLGAIGAALT 146 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88884 35678899999988655544444443333334455433 334455555555555555666666665
Q ss_pred c
Q 009019 380 P 380 (546)
Q Consensus 380 p 380 (546)
-
T Consensus 147 ~ 147 (211)
T TIGR01190 147 V 147 (211)
T ss_pred H
Confidence 3
No 495
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.2 Score=52.77 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC-
Q 009019 34 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD- 103 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D- 103 (546)
-.|-||+|-+.+|.-|+ .+++||+|||-+|-||..-+..+++. ... ...+.|-+|+. +.+.+..+
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~--~~Q~fvT~t~~--~~~~~~~~~ 349 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL--GVQVFVTTTDL--EDIDDNLDE 349 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc--CCeEEEEccCH--HHhhhhhhc
Confidence 46999999999987765 46799999999999999999998887 332 23466666654 34554444
Q ss_pred --eEEEEeCCeE
Q 009019 104 --RLYLLSGGKT 113 (546)
Q Consensus 104 --~v~lL~~G~~ 113 (546)
++....+|++
T Consensus 350 ~~~~f~V~~g~i 361 (363)
T COG1195 350 NAQMFHVEDGKI 361 (363)
T ss_pred cceEEEEeccee
Confidence 6777777775
No 496
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=0.08 Score=55.27 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=36.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009019 56 LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 56 l~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
+++|||+.+||+.++..+++.|++.. .+.++|+++|+|. .+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~-~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAAD-KVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChH-hCh
Confidence 56789999999999999999999986 5689999999974 444
No 497
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=0.086 Score=61.63 Aligned_cols=75 Identities=28% Similarity=0.474 Sum_probs=63.2
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009019 32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
+..||||||-.-|+|-.++. +| +++++||.-+.||..+.--|-+.+++-.+.-.=||++.. ...|+++||++=
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLR---nnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLR---NNMFELANRLVG 1269 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEeh---hhHHHHHhhhee
Confidence 45699999999999999875 45 899999999999999999999999987765555555553 578999999987
Q ss_pred Ee
Q 009019 108 LS 109 (546)
Q Consensus 108 L~ 109 (546)
+.
T Consensus 1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred eE
Confidence 65
No 498
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=93.12 E-value=3.6 Score=43.96 Aligned_cols=137 Identities=10% Similarity=0.062 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccc--cCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 009019 314 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL--HPGF--IHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG 389 (546)
Q Consensus 314 ~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl--~~~~--~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~ 389 (546)
+...|++-+.++.....++.+++|+.+. +..+. ...+ ..|+.+++..|+...+.-...-.+.++.+...++..+
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~~~~~l- 317 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPFMPFWL- 317 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH-
Confidence 7888999999999999999999998886 44333 2333 3477777766655443221111122222222222111
Q ss_pred HHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccch
Q 009019 390 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSK 469 (546)
Q Consensus 390 ~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~ 469 (546)
+..++.-+-+++ .|.+-.|+ +.+| .| .-|++.+++++-.--| |-.. ...
T Consensus 318 -l~wvi~nv~~~~-~P~el~p~-fyr~-gy-a~P~~n~~~~~r~I~f-------------------------d~~~-~~l 366 (382)
T PF12051_consen 318 -LFWVILNVSSTF-YPLELSPG-FYRY-GY-AMPMHNIYEGLRVIFF-------------------------DTCK-GQL 366 (382)
T ss_pred -HHHHHHhccccc-CChhhCcc-HHHH-hh-hhhHHHHHHHHHHhee-------------------------CCCc-ccc
Confidence 111222223443 35555666 4554 32 3388888887766422 1111 125
Q ss_pred hHHHHHHHHHHHHH
Q 009019 470 WIDLSVIFSMIISY 483 (546)
Q Consensus 470 w~~~~iL~~~~~~f 483 (546)
.+|+++|++++++-
T Consensus 367 g~n~gil~aw~~v~ 380 (382)
T PF12051_consen 367 GRNYGILFAWIVVN 380 (382)
T ss_pred cchHHHHHHHHHHH
Confidence 56888998887753
No 499
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.73 E-value=0.29 Score=53.38 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHH---hCC-----CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009019 34 GISGGERRRVSIALEIL---MRP-----RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~---~~P-----~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
.||-|||+-++.+--|+ -+| +++++|.|.|.+|+....+++..++..+.+++-||+-+|+ ...+..++|.+
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~~~~~ 607 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDITLEL 607 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHHHhhh
Confidence 59999999988776654 354 5789999999999999999999999999999999999999 45555555544
No 500
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.68 E-value=0.083 Score=60.82 Aligned_cols=72 Identities=25% Similarity=0.457 Sum_probs=56.1
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009019 32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
...||||||=.|++...|+. .| +++||||--+.||-.+...|-++|+.--.+..=||++.-+ -.|.-+|++.
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKe---GMF~NANvLF 1155 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKE---GMFNNANVLF 1155 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchh---hccccchhhh
Confidence 45799999999888765543 45 8999999999999999999999999866555566776655 3566565554
Done!