Query 009022
Match_columns 546
No_of_seqs 680 out of 4971
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 19:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-47 3.8E-52 329.8 25.7 329 103-489 108-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.4E-46 3E-51 324.3 26.3 309 158-508 103-456 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-44 2.9E-49 316.2 23.3 283 168-489 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 1.6E-40 3.4E-45 277.2 26.9 288 164-489 49-343 (343)
5 KOG0279 G protein beta subunit 100.0 1.2E-39 2.6E-44 270.4 30.8 293 162-491 7-313 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-40 9.3E-45 288.1 15.9 286 104-446 169-458 (459)
7 KOG0315 G-protein beta subunit 100.0 5.8E-38 1.2E-42 256.0 26.2 293 184-510 11-307 (311)
8 KOG0265 U5 snRNP-specific prot 100.0 3.2E-38 6.9E-43 264.6 25.2 294 164-489 41-336 (338)
9 KOG0279 G protein beta subunit 100.0 3.2E-37 6.9E-42 256.0 26.6 301 103-448 8-313 (315)
10 KOG0645 WD40 repeat protein [G 100.0 5.4E-36 1.2E-40 247.6 32.7 291 162-491 6-311 (312)
11 KOG0296 Angio-associated migra 100.0 7.6E-37 1.6E-41 262.9 28.5 319 164-512 58-377 (399)
12 KOG0273 Beta-transducin family 100.0 1.3E-36 2.9E-41 269.8 26.7 314 164-510 173-502 (524)
13 KOG0296 Angio-associated migra 100.0 2.8E-36 6E-41 259.5 23.3 327 107-491 61-398 (399)
14 KOG0285 Pleiotropic regulator 100.0 7.2E-36 1.6E-40 256.1 25.3 299 151-492 133-440 (460)
15 KOG0284 Polyadenylation factor 100.0 7.2E-37 1.6E-41 266.6 19.3 293 160-491 86-380 (464)
16 KOG0282 mRNA splicing factor [ 100.0 1.1E-36 2.5E-41 271.3 19.3 295 160-489 204-503 (503)
17 KOG0273 Beta-transducin family 100.0 3.6E-35 7.7E-40 260.7 27.7 335 108-491 176-523 (524)
18 KOG0315 G-protein beta subunit 100.0 2.6E-35 5.6E-40 240.5 24.6 288 122-465 11-305 (311)
19 KOG4328 WD40 protein [Function 100.0 8E-35 1.7E-39 257.7 27.6 320 151-491 167-495 (498)
20 KOG0291 WD40-repeat-containing 100.0 1.6E-34 3.5E-39 270.6 30.9 301 164-494 344-712 (893)
21 KOG0291 WD40-repeat-containing 100.0 1.2E-34 2.6E-39 271.5 28.2 313 154-505 291-626 (893)
22 KOG0263 Transcription initiati 100.0 3E-35 6.5E-40 278.0 24.2 254 160-494 368-652 (707)
23 KOG0318 WD40 repeat stress pro 100.0 1.5E-33 3.3E-38 253.7 33.2 308 161-491 181-602 (603)
24 KOG0319 WD40-repeat-containing 100.0 1.4E-34 3E-39 270.7 24.9 353 103-507 140-593 (775)
25 KOG0295 WD40 repeat-containing 100.0 1E-34 2.2E-39 249.7 22.0 295 156-490 94-405 (406)
26 KOG0319 WD40-repeat-containing 100.0 1.9E-34 4.2E-39 269.7 25.6 327 153-505 87-549 (775)
27 KOG0318 WD40 repeat stress pro 100.0 2.6E-33 5.6E-38 252.3 31.6 373 96-496 45-565 (603)
28 KOG0316 Conserved WD40 repeat- 100.0 4E-34 8.6E-39 231.7 23.7 287 163-491 10-299 (307)
29 KOG0293 WD40 repeat-containing 100.0 1.7E-34 3.8E-39 252.1 22.1 293 162-492 216-514 (519)
30 KOG0266 WD40 repeat-containing 100.0 2.5E-33 5.4E-38 273.1 31.4 294 163-491 151-454 (456)
31 cd00200 WD40 WD40 domain, foun 100.0 8.9E-33 1.9E-37 257.6 32.3 286 164-489 3-289 (289)
32 KOG0640 mRNA cleavage stimulat 100.0 7.8E-34 1.7E-38 239.1 22.0 310 157-491 99-426 (430)
33 KOG0263 Transcription initiati 100.0 4.7E-34 1E-38 269.9 22.1 264 107-388 376-651 (707)
34 KOG0772 Uncharacterized conser 100.0 5.9E-33 1.3E-37 249.3 26.1 323 164-502 161-502 (641)
35 KOG0286 G-protein beta subunit 100.0 2.5E-32 5.4E-37 228.4 27.1 266 208-509 49-321 (343)
36 KOG0276 Vesicle coat complex C 100.0 2.1E-32 4.4E-37 251.3 27.0 306 164-508 7-315 (794)
37 PLN00181 protein SPA1-RELATED; 100.0 9.4E-32 2E-36 282.2 36.1 293 166-490 479-792 (793)
38 KOG0295 WD40 repeat-containing 100.0 9.7E-34 2.1E-38 243.7 16.4 274 211-513 105-386 (406)
39 KOG0284 Polyadenylation factor 100.0 1.5E-33 3.3E-38 246.0 16.4 271 121-447 108-379 (464)
40 KOG0282 mRNA splicing factor [ 100.0 9.2E-33 2E-37 246.4 17.4 295 99-446 203-503 (503)
41 KOG0281 Beta-TrCP (transducin 100.0 1.1E-32 2.4E-37 235.7 16.3 276 169-496 196-482 (499)
42 KOG0306 WD40-repeat-containing 100.0 3.6E-31 7.7E-36 248.2 27.3 294 161-494 364-667 (888)
43 KOG1407 WD40 repeat protein [F 100.0 4.5E-31 9.8E-36 217.3 23.9 276 164-481 14-291 (313)
44 KOG0278 Serine/threonine kinas 100.0 2.4E-32 5.1E-37 223.4 15.3 289 165-495 9-301 (334)
45 KOG0643 Translation initiation 100.0 8.2E-31 1.8E-35 216.5 24.4 299 165-492 5-318 (327)
46 KOG0316 Conserved WD40 repeat- 100.0 9.4E-31 2E-35 212.2 24.2 259 211-508 14-274 (307)
47 KOG0292 Vesicle coat complex C 100.0 3.8E-31 8.2E-36 252.2 25.3 299 166-501 5-331 (1202)
48 KOG0275 Conserved WD40 repeat- 100.0 2.5E-32 5.3E-37 231.6 14.7 298 157-489 200-507 (508)
49 KOG0281 Beta-TrCP (transducin 100.0 5.8E-32 1.3E-36 231.3 15.5 271 121-453 207-482 (499)
50 KOG0283 WD40 repeat-containing 100.0 1.5E-30 3.3E-35 248.5 24.5 300 162-493 258-578 (712)
51 KOG0772 Uncharacterized conser 100.0 1.6E-31 3.4E-36 240.1 16.2 301 60-385 175-486 (641)
52 KOG0306 WD40-repeat-containing 100.0 1.7E-29 3.7E-34 237.0 29.9 366 101-508 98-639 (888)
53 KOG1446 Histone H3 (Lys4) meth 100.0 5.9E-29 1.3E-33 211.2 30.3 293 164-493 8-305 (311)
54 KOG0268 Sof1-like rRNA process 100.0 3.7E-31 8E-36 227.7 17.2 293 163-499 59-353 (433)
55 KOG0277 Peroxisomal targeting 100.0 1.1E-29 2.5E-34 208.3 23.4 284 173-490 11-308 (311)
56 KOG2096 WD40 repeat protein [G 100.0 3.7E-29 8.1E-34 211.8 26.5 312 161-493 77-404 (420)
57 KOG0292 Vesicle coat complex C 100.0 9.6E-30 2.1E-34 242.7 25.5 308 117-493 17-350 (1202)
58 KOG0285 Pleiotropic regulator 100.0 7.1E-30 1.5E-34 219.4 22.0 295 103-448 144-439 (460)
59 KOG0305 Anaphase promoting com 100.0 1.4E-29 3.1E-34 235.7 25.7 278 174-493 181-463 (484)
60 KOG0645 WD40 repeat protein [G 100.0 8.8E-29 1.9E-33 205.1 27.3 297 103-448 7-311 (312)
61 KOG0265 U5 snRNP-specific prot 100.0 5.7E-30 1.2E-34 215.2 19.8 288 103-444 40-334 (338)
62 KOG0313 Microtubule binding pr 100.0 5.9E-30 1.3E-34 221.7 20.5 275 63-385 114-417 (423)
63 KOG0266 WD40 repeat-containing 100.0 3E-29 6.6E-34 244.5 28.2 294 104-448 152-454 (456)
64 KOG0288 WD40 repeat protein Ti 100.0 4.9E-31 1.1E-35 230.8 13.9 287 164-489 169-459 (459)
65 KOG0299 U3 snoRNP-associated p 100.0 2.4E-29 5.2E-34 223.4 21.8 290 163-489 135-454 (479)
66 KOG0293 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 222.0 17.8 292 104-449 218-514 (519)
67 KOG0313 Microtubule binding pr 100.0 1.7E-28 3.6E-33 212.7 24.0 289 168-491 103-418 (423)
68 KOG0276 Vesicle coat complex C 100.0 1.9E-28 4.1E-33 225.4 25.3 254 211-501 10-267 (794)
69 KOG0277 Peroxisomal targeting 100.0 5.5E-29 1.2E-33 204.3 19.3 247 169-447 59-308 (311)
70 PLN00181 protein SPA1-RELATED; 100.0 1.8E-27 4E-32 249.9 33.7 302 107-447 480-792 (793)
71 PTZ00421 coronin; Provisional 100.0 2.1E-27 4.5E-32 230.2 30.2 211 165-390 70-294 (493)
72 KOG0274 Cdc4 and related F-box 100.0 6.9E-28 1.5E-32 233.6 26.7 285 168-502 206-493 (537)
73 KOG0289 mRNA splicing factor [ 100.0 2.8E-27 6E-32 208.6 25.0 283 171-490 220-505 (506)
74 KOG0283 WD40 repeat-containing 100.0 9.5E-28 2.1E-32 229.4 23.7 271 104-388 260-578 (712)
75 KOG4283 Transcription-coupled 100.0 1.1E-27 2.4E-32 200.8 21.0 295 166-491 39-365 (397)
76 KOG0310 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 213.3 23.4 284 169-492 25-310 (487)
77 cd00200 WD40 WD40 domain, foun 100.0 1.4E-26 3.1E-31 215.6 29.5 260 211-508 6-266 (289)
78 KOG0264 Nucleosome remodeling 100.0 4.5E-27 9.7E-32 209.1 24.0 270 161-448 115-404 (422)
79 KOG0647 mRNA export protein (c 100.0 1.6E-26 3.4E-31 194.7 25.3 279 169-481 26-312 (347)
80 KOG1036 Mitotic spindle checkp 100.0 3.7E-26 8E-31 193.3 27.2 276 170-481 13-293 (323)
81 PTZ00420 coronin; Provisional 100.0 4.3E-26 9.4E-31 221.8 31.8 214 162-389 66-296 (568)
82 KOG0299 U3 snoRNP-associated p 100.0 4.1E-27 8.9E-32 209.3 22.1 265 103-388 135-412 (479)
83 KOG0973 Histone transcription 100.0 5E-27 1.1E-31 230.3 24.9 300 168-493 11-357 (942)
84 KOG2055 WD40 repeat protein [G 100.0 5.7E-27 1.2E-31 208.3 22.7 292 170-491 213-512 (514)
85 KOG0278 Serine/threonine kinas 100.0 1.4E-27 3E-32 195.5 16.7 248 103-389 52-300 (334)
86 KOG0275 Conserved WD40 repeat- 100.0 9E-28 2E-32 203.9 16.1 292 108-446 212-507 (508)
87 KOG1446 Histone H3 (Lys4) meth 100.0 5E-26 1.1E-30 193.5 26.3 259 211-502 11-273 (311)
88 KOG1407 WD40 repeat protein [F 100.0 1.7E-26 3.7E-31 190.5 22.4 293 107-447 17-310 (313)
89 PTZ00421 coronin; Provisional 100.0 9.3E-26 2E-30 218.8 30.3 262 216-499 22-298 (493)
90 PTZ00420 coronin; Provisional 100.0 2.1E-25 4.5E-30 217.1 31.8 251 189-474 50-318 (568)
91 KOG0268 Sof1-like rRNA process 100.0 2.8E-27 6E-32 204.0 16.3 290 102-453 58-350 (433)
92 KOG1273 WD40 repeat protein [G 100.0 2.2E-26 4.7E-31 194.9 21.3 292 173-493 26-324 (405)
93 KOG0643 Translation initiation 100.0 5.2E-26 1.1E-30 188.3 22.7 292 107-448 7-317 (327)
94 KOG0300 WD40 repeat-containing 99.9 2.4E-26 5.2E-31 194.8 20.3 298 162-493 140-478 (481)
95 KOG0310 Conserved WD40 repeat- 99.9 1.4E-26 3E-31 207.5 19.2 258 214-508 26-285 (487)
96 KOG0294 WD40 repeat-containing 99.9 2.6E-25 5.6E-30 188.5 25.1 251 211-504 40-299 (362)
97 KOG0288 WD40 repeat protein Ti 99.9 9.4E-27 2E-31 204.1 16.8 285 106-445 171-458 (459)
98 KOG0289 mRNA splicing factor [ 99.9 2.4E-25 5.2E-30 196.5 25.3 252 163-447 254-505 (506)
99 KOG0641 WD40 repeat protein [G 99.9 2.5E-24 5.5E-29 173.9 28.3 291 160-491 23-349 (350)
100 KOG0274 Cdc4 and related F-box 99.9 2.4E-25 5.2E-30 216.0 26.1 260 160-465 238-499 (537)
101 KOG0264 Nucleosome remodeling 99.9 1.7E-25 3.7E-30 199.1 22.8 212 164-386 171-404 (422)
102 KOG0641 WD40 repeat protein [G 99.9 2E-24 4.3E-29 174.5 25.9 258 160-448 79-349 (350)
103 KOG1539 WD repeat protein [Gen 99.9 2.5E-24 5.5E-29 204.9 31.0 323 155-504 187-619 (910)
104 KOG1332 Vesicle coat complex C 99.9 1.3E-25 2.7E-30 183.6 17.6 258 164-491 5-286 (299)
105 KOG0300 WD40 repeat-containing 99.9 4E-25 8.8E-30 187.4 20.6 299 102-450 140-478 (481)
106 KOG0305 Anaphase promoting com 99.9 9.5E-25 2E-29 203.7 24.8 242 169-450 216-463 (484)
107 KOG0639 Transducin-like enhanc 99.9 1.2E-25 2.6E-30 201.9 17.7 292 158-490 407-703 (705)
108 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.2E-30 207.5 18.6 245 122-388 38-287 (735)
109 KOG0301 Phospholipase A2-activ 99.9 8.9E-25 1.9E-29 203.9 22.8 282 160-491 4-288 (745)
110 KOG1408 WD40 repeat protein [F 99.9 1.3E-24 2.8E-29 203.3 23.8 297 164-492 363-714 (1080)
111 KOG0640 mRNA cleavage stimulat 99.9 2.9E-25 6.4E-30 187.6 17.4 271 103-385 105-425 (430)
112 KOG1274 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 204.2 28.5 280 167-488 10-297 (933)
113 KOG1408 WD40 repeat protein [F 99.9 1.6E-24 3.4E-29 202.7 23.0 315 172-508 326-688 (1080)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.2E-28 195.5 31.6 285 184-504 2-292 (300)
115 KOG0308 Conserved WD40 repeat- 99.9 3.4E-25 7.5E-30 205.1 18.1 287 169-491 20-327 (735)
116 KOG1274 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 204.7 26.8 252 211-492 10-263 (933)
117 KOG0973 Histone transcription 99.9 1.1E-24 2.3E-29 214.1 22.0 313 62-389 23-358 (942)
118 KOG0269 WD40 repeat-containing 99.9 5.4E-25 1.2E-29 207.9 18.5 291 171-494 40-343 (839)
119 KOG0294 WD40 repeat-containing 99.9 6.8E-24 1.5E-28 180.0 22.5 247 160-451 33-284 (362)
120 KOG0647 mRNA export protein (c 99.9 4E-24 8.8E-29 180.3 20.6 263 211-510 24-300 (347)
121 KOG4227 WD40 repeat protein [G 99.9 1E-23 2.2E-28 183.8 21.8 332 132-491 16-387 (609)
122 KOG0269 WD40 repeat-containing 99.9 9.1E-25 2E-29 206.3 15.7 202 172-387 89-297 (839)
123 KOG0302 Ribosome Assembly prot 99.9 1.1E-23 2.5E-28 182.8 20.1 217 160-384 201-436 (440)
124 KOG0646 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 187.8 20.1 276 188-500 12-316 (476)
125 KOG1063 RNA polymerase II elon 99.9 5.1E-23 1.1E-27 192.2 24.7 358 102-493 183-650 (764)
126 KOG0650 WD40 repeat nucleolar 99.9 3.5E-23 7.5E-28 190.1 22.7 297 161-488 391-732 (733)
127 KOG1539 WD repeat protein [Gen 99.9 7.2E-23 1.6E-27 195.2 25.5 300 164-492 238-649 (910)
128 KOG1332 Vesicle coat complex C 99.9 9.8E-24 2.1E-28 172.6 16.7 239 121-386 23-286 (299)
129 KOG0270 WD40 repeat-containing 99.9 2.7E-23 5.8E-28 184.4 19.8 255 122-389 193-452 (463)
130 KOG1445 Tumor-specific antigen 99.9 1.7E-23 3.7E-28 193.3 18.9 127 162-298 71-202 (1012)
131 KOG2445 Nuclear pore complex c 99.9 3E-22 6.5E-27 169.5 23.8 273 166-491 9-318 (361)
132 KOG0302 Ribosome Assembly prot 99.9 1.7E-22 3.7E-27 175.5 22.7 213 166-387 147-379 (440)
133 KOG1188 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 173.8 21.7 287 184-490 41-345 (376)
134 KOG0270 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 180.1 21.1 241 184-455 193-456 (463)
135 KOG0639 Transducin-like enhanc 99.9 2E-23 4.3E-28 187.7 16.1 259 212-508 417-680 (705)
136 KOG2048 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 182.2 28.4 291 164-492 19-320 (691)
137 KOG0321 WD40 repeat-containing 99.9 2.7E-22 5.9E-27 185.7 22.9 288 176-493 55-393 (720)
138 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.6E-27 189.9 20.6 281 103-448 7-288 (745)
139 KOG1063 RNA polymerase II elon 99.9 2.7E-22 5.9E-27 187.4 22.5 331 161-508 182-623 (764)
140 KOG1036 Mitotic spindle checkp 99.9 5.2E-22 1.1E-26 168.3 22.1 251 211-502 10-273 (323)
141 KOG2919 Guanine nucleotide-bin 99.9 1.3E-21 2.9E-26 166.7 23.9 280 175-485 54-363 (406)
142 KOG2106 Uncharacterized conser 99.9 5.4E-21 1.2E-25 172.3 28.6 304 153-498 183-528 (626)
143 KOG2106 Uncharacterized conser 99.9 6.2E-21 1.3E-25 172.0 27.9 296 165-490 282-625 (626)
144 KOG0646 WD40 repeat protein [G 99.9 3E-21 6.5E-26 172.6 23.1 260 185-472 52-329 (476)
145 KOG0267 Microtubule severing p 99.9 3E-23 6.4E-28 194.7 9.6 226 165-417 23-249 (825)
146 KOG2055 WD40 repeat protein [G 99.9 1.7E-21 3.7E-26 173.8 19.4 294 107-448 211-512 (514)
147 KOG2048 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 175.2 26.4 254 212-495 23-279 (691)
148 KOG4283 Transcription-coupled 99.9 2.4E-20 5.1E-25 157.1 24.4 298 211-526 40-358 (397)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-20 6.6E-25 174.5 28.5 267 164-472 25-300 (300)
150 KOG0303 Actin-binding protein 99.9 7.6E-21 1.6E-25 166.3 18.0 211 165-388 76-296 (472)
151 KOG0321 WD40 repeat-containing 99.9 2.5E-20 5.4E-25 172.8 22.4 267 164-450 94-393 (720)
152 KOG0267 Microtubule severing p 99.9 2.3E-22 5.1E-27 188.7 9.2 197 164-378 64-260 (825)
153 KOG1273 WD40 repeat protein [G 99.9 2.5E-20 5.4E-25 158.4 19.6 251 217-503 26-292 (405)
154 KOG1445 Tumor-specific antigen 99.9 1.5E-20 3.2E-25 174.1 18.9 161 312-493 628-800 (1012)
155 KOG0307 Vesicle coat complex C 99.9 3.6E-21 7.7E-26 190.5 14.5 292 175-494 11-330 (1049)
156 KOG1334 WD40 repeat protein [G 99.9 4.6E-20 1E-24 165.8 19.5 308 164-493 136-468 (559)
157 KOG1034 Transcriptional repres 99.9 8.4E-20 1.8E-24 156.2 19.7 302 164-491 32-383 (385)
158 KOG0322 G-protein beta subunit 99.9 5.7E-20 1.2E-24 152.5 18.1 293 164-490 8-322 (323)
159 KOG2096 WD40 repeat protein [G 99.9 3.4E-19 7.3E-24 151.8 22.7 273 211-508 83-378 (420)
160 KOG4378 Nuclear protein COP1 [ 99.8 6.3E-20 1.4E-24 165.2 18.5 266 172-474 36-305 (673)
161 KOG1009 Chromatin assembly com 99.8 5E-20 1.1E-24 161.9 17.5 299 170-494 13-375 (434)
162 KOG1007 WD repeat protein TSSC 99.8 1.7E-19 3.7E-24 151.5 19.5 212 164-386 57-289 (370)
163 KOG1538 Uncharacterized conser 99.8 6.4E-20 1.4E-24 170.9 18.7 276 172-493 14-295 (1081)
164 KOG2445 Nuclear pore complex c 99.8 3.8E-19 8.1E-24 150.9 21.6 264 107-387 10-319 (361)
165 KOG4328 WD40 protein [Function 99.8 4.1E-19 8.8E-24 158.6 20.1 290 112-448 189-495 (498)
166 KOG1517 Guanine nucleotide bin 99.8 1.5E-18 3.2E-23 170.1 25.5 306 166-494 1060-1384(1387)
167 KOG1587 Cytoplasmic dynein int 99.8 4.6E-18 1E-22 164.0 28.1 274 193-493 222-518 (555)
168 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-19 5E-24 161.6 16.8 200 174-389 83-283 (673)
169 KOG0307 Vesicle coat complex C 99.8 2.8E-20 6.1E-25 184.2 11.9 215 163-389 109-330 (1049)
170 KOG2919 Guanine nucleotide-bin 99.8 3.4E-18 7.4E-23 146.1 22.6 261 217-501 52-338 (406)
171 KOG1240 Protein kinase contain 99.8 2.9E-18 6.3E-23 170.6 24.7 228 156-390 1034-1277(1431)
172 KOG0650 WD40 repeat nucleolar 99.8 4E-19 8.7E-24 163.7 17.3 293 103-445 393-732 (733)
173 KOG0290 Conserved WD40 repeat- 99.8 2.7E-18 6E-23 144.5 19.3 208 168-388 94-320 (364)
174 KOG1034 Transcriptional repres 99.8 1.3E-18 2.8E-23 149.0 16.8 222 161-386 126-383 (385)
175 PRK11028 6-phosphogluconolacto 99.8 4.2E-17 9.1E-22 154.4 29.2 280 185-491 4-304 (330)
176 KOG0644 Uncharacterized conser 99.8 1.3E-19 2.9E-24 172.9 11.1 288 159-494 179-471 (1113)
177 KOG0642 Cell-cycle nuclear pro 99.8 6.9E-19 1.5E-23 161.3 14.4 261 165-502 289-572 (577)
178 KOG0303 Actin-binding protein 99.8 2.4E-18 5.1E-23 150.9 17.1 216 211-494 78-297 (472)
179 KOG1587 Cytoplasmic dynein int 99.8 1.6E-17 3.5E-22 160.3 24.6 261 169-449 241-517 (555)
180 KOG0649 WD40 repeat protein [G 99.8 2.1E-17 4.7E-22 135.6 20.8 207 172-390 12-239 (325)
181 KOG0290 Conserved WD40 repeat- 99.8 1.3E-16 2.8E-21 134.5 25.4 292 172-489 46-363 (364)
182 KOG1007 WD repeat protein TSSC 99.8 2.2E-17 4.7E-22 139.0 18.6 213 161-386 113-361 (370)
183 KOG2110 Uncharacterized conser 99.8 2.3E-16 5.1E-21 137.6 25.5 199 172-389 48-251 (391)
184 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-18 9.3E-23 156.2 15.4 262 105-390 289-565 (577)
185 KOG1310 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 154.6 15.9 223 164-389 44-306 (758)
186 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-15 2.9E-20 150.9 34.6 293 161-492 146-443 (466)
187 KOG1963 WD40 repeat protein [G 99.8 1.9E-16 4.1E-21 153.2 26.4 300 167-493 202-540 (792)
188 KOG0771 Prolactin regulatory e 99.8 5.4E-18 1.2E-22 150.4 14.6 201 174-387 148-355 (398)
189 KOG2110 Uncharacterized conser 99.8 2.5E-16 5.5E-21 137.4 23.9 239 171-494 6-251 (391)
190 KOG1009 Chromatin assembly com 99.8 4.3E-17 9.4E-22 143.7 19.1 267 108-390 12-376 (434)
191 KOG1517 Guanine nucleotide bin 99.8 1.2E-16 2.6E-21 156.9 23.2 289 121-450 1076-1383(1387)
192 KOG1963 WD40 repeat protein [G 99.8 6.4E-16 1.4E-20 149.6 27.1 315 155-493 42-489 (792)
193 KOG1538 Uncharacterized conser 99.7 3.9E-17 8.4E-22 152.6 16.4 244 163-449 46-294 (1081)
194 COG2319 FOG: WD40 repeat [Gene 99.7 6.4E-15 1.4E-19 146.0 33.8 290 165-494 60-362 (466)
195 KOG4227 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 139.2 17.9 258 211-492 53-323 (609)
196 KOG2139 WD40 repeat protein [G 99.7 1.8E-15 4E-20 131.6 23.4 298 171-491 99-431 (445)
197 KOG1334 WD40 repeat protein [G 99.7 1E-16 2.2E-21 144.6 15.9 277 211-508 139-441 (559)
198 KOG1523 Actin-related protein 99.7 2.4E-15 5.3E-20 128.8 21.7 214 166-389 6-239 (361)
199 KOG1188 WD40 repeat protein [G 99.7 9.3E-16 2E-20 132.4 18.5 148 228-387 41-197 (376)
200 KOG0322 G-protein beta subunit 99.7 2.9E-16 6.3E-21 130.7 14.2 252 108-385 12-322 (323)
201 KOG1240 Protein kinase contain 99.7 3.9E-15 8.5E-20 148.8 24.6 275 198-496 1034-1339(1431)
202 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-14 2.8E-19 136.7 27.1 296 185-504 8-360 (369)
203 KOG1524 WD40 repeat-containing 99.7 9.7E-16 2.1E-20 139.9 18.2 263 168-488 12-283 (737)
204 KOG0644 Uncharacterized conser 99.7 3.8E-17 8.2E-22 156.5 9.4 244 211-500 187-435 (1113)
205 KOG3881 Uncharacterized conser 99.7 1.5E-15 3.2E-20 133.6 18.4 217 165-390 100-324 (412)
206 KOG1523 Actin-related protein 99.7 3.5E-15 7.7E-20 127.8 20.1 223 213-494 9-239 (361)
207 KOG0649 WD40 repeat protein [G 99.7 5.9E-14 1.3E-18 115.7 23.8 206 158-386 50-274 (325)
208 KOG1524 WD40 repeat-containing 99.7 5.4E-15 1.2E-19 135.1 19.2 188 164-385 98-285 (737)
209 KOG2321 WD40 repeat protein [G 99.7 3.2E-14 6.9E-19 131.3 23.3 285 168-491 49-343 (703)
210 KOG4497 Uncharacterized conser 99.7 1E-14 2.2E-19 125.4 18.5 286 170-492 48-392 (447)
211 KOG2111 Uncharacterized conser 99.7 6.9E-14 1.5E-18 120.0 22.7 238 172-492 7-257 (346)
212 PRK11028 6-phosphogluconolacto 99.7 8.9E-14 1.9E-18 131.7 26.4 252 170-448 34-304 (330)
213 KOG4497 Uncharacterized conser 99.7 2.2E-15 4.7E-20 129.5 13.4 222 176-447 14-239 (447)
214 KOG1272 WD40-repeat-containing 99.7 1.3E-15 2.9E-20 136.7 12.5 197 172-390 131-327 (545)
215 PRK01742 tolB translocation pr 99.6 1.3E-14 2.8E-19 141.7 20.1 235 192-473 183-426 (429)
216 KOG3881 Uncharacterized conser 99.6 1.5E-14 3.3E-19 127.3 18.1 265 213-504 54-333 (412)
217 KOG0771 Prolactin regulatory e 99.6 2.8E-14 6E-19 127.1 19.8 202 270-492 148-355 (398)
218 KOG1310 WD40 repeat protein [G 99.6 1.7E-14 3.6E-19 132.3 15.1 167 211-386 47-231 (758)
219 KOG1272 WD40-repeat-containing 99.6 2.2E-15 4.9E-20 135.2 8.5 201 269-501 132-333 (545)
220 KOG2315 Predicted translation 99.6 1.5E-12 3.3E-17 120.3 26.5 285 171-500 35-398 (566)
221 KOG1354 Serine/threonine prote 99.6 2.6E-13 5.7E-18 117.6 19.4 216 169-387 24-302 (433)
222 KOG2111 Uncharacterized conser 99.6 1E-12 2.3E-17 112.9 22.3 182 193-389 75-259 (346)
223 PRK01742 tolB translocation pr 99.6 2.9E-13 6.3E-18 132.2 20.6 198 164-386 197-401 (429)
224 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.2E-18 126.0 16.3 174 275-471 182-383 (636)
225 PRK03629 tolB translocation pr 99.6 4E-12 8.7E-17 123.9 27.0 237 193-472 179-427 (429)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 1.3E-13 2.8E-18 126.3 15.1 138 170-321 219-384 (636)
227 KOG1409 Uncharacterized conser 99.5 5.8E-13 1.3E-17 115.5 18.0 258 98-390 12-274 (404)
228 PRK03629 tolB translocation pr 99.5 4.5E-12 9.7E-17 123.5 25.7 200 164-386 192-406 (429)
229 KOG2139 WD40 repeat protein [G 99.5 6.8E-12 1.5E-16 109.7 22.6 193 169-378 139-367 (445)
230 KOG2314 Translation initiation 99.5 9.3E-12 2E-16 114.9 22.9 284 173-492 213-574 (698)
231 PRK04922 tolB translocation pr 99.5 7.9E-12 1.7E-16 122.5 24.2 237 193-472 184-432 (433)
232 PRK05137 tolB translocation pr 99.5 1.1E-11 2.3E-16 121.7 25.0 203 164-389 195-415 (435)
233 PRK04922 tolB translocation pr 99.5 1E-11 2.2E-16 121.7 23.3 201 164-387 197-412 (433)
234 PF08662 eIF2A: Eukaryotic tra 99.5 7.1E-12 1.5E-16 107.3 19.4 149 218-386 9-179 (194)
235 PF08662 eIF2A: Eukaryotic tra 99.5 5.7E-12 1.2E-16 107.8 18.4 150 174-342 9-179 (194)
236 PF02239 Cytochrom_D1: Cytochr 99.5 4.1E-11 8.9E-16 113.2 25.7 268 164-457 30-356 (369)
237 PRK02889 tolB translocation pr 99.5 2.3E-11 5E-16 118.7 24.8 238 193-473 176-425 (427)
238 PRK05137 tolB translocation pr 99.4 9.4E-11 2E-15 115.1 27.2 236 193-472 182-432 (435)
239 PF10282 Lactonase: Lactonase, 99.4 1.6E-10 3.4E-15 109.6 27.4 286 186-495 2-328 (345)
240 KOG0974 WD-repeat protein WDR6 99.4 5.8E-12 1.3E-16 124.8 17.4 198 269-492 90-289 (967)
241 KOG0280 Uncharacterized conser 99.4 5.8E-11 1.3E-15 101.1 20.8 276 192-495 45-337 (339)
242 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 114.3 16.9 195 186-387 148-344 (703)
243 PRK02889 tolB translocation pr 99.4 5.3E-11 1.2E-15 116.2 21.7 199 164-385 189-402 (427)
244 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.5E-09 5.4E-14 98.6 29.5 286 193-499 27-338 (352)
245 TIGR02800 propeller_TolB tol-p 99.4 2.1E-10 4.5E-15 112.8 23.1 192 164-378 183-386 (417)
246 COG5354 Uncharacterized protei 99.3 3.7E-10 7.9E-15 103.6 22.4 285 169-492 31-396 (561)
247 COG2706 3-carboxymuconate cycl 99.3 6E-09 1.3E-13 92.2 28.1 279 192-492 15-322 (346)
248 KOG1064 RAVE (regulator of V-A 99.3 1.7E-11 3.8E-16 127.6 14.2 200 212-458 2206-2408(2439)
249 TIGR02800 propeller_TolB tol-p 99.3 9.1E-10 2E-14 108.3 25.9 176 193-389 170-357 (417)
250 PRK01029 tolB translocation pr 99.3 1.1E-09 2.4E-14 106.4 25.9 245 193-474 165-426 (428)
251 PRK04792 tolB translocation pr 99.3 1.2E-09 2.7E-14 107.0 25.4 236 194-472 199-446 (448)
252 KOG1064 RAVE (regulator of V-A 99.3 2.9E-11 6.3E-16 126.0 13.9 198 166-392 2204-2404(2439)
253 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.4E-16 114.3 9.7 217 160-390 725-952 (1034)
254 PRK00178 tolB translocation pr 99.3 2.4E-09 5.2E-14 105.4 26.8 237 194-473 180-428 (430)
255 KOG4532 WD40-like repeat conta 99.3 9.8E-10 2.1E-14 92.5 19.2 196 185-390 86-286 (344)
256 PRK04792 tolB translocation pr 99.3 2.3E-09 5E-14 105.1 24.6 201 164-386 211-425 (448)
257 PRK00178 tolB translocation pr 99.3 2.6E-09 5.7E-14 105.2 24.9 200 164-386 192-406 (430)
258 PRK01029 tolB translocation pr 99.2 4.6E-09 1E-13 102.1 25.5 207 165-389 179-406 (428)
259 TIGR03300 assembly_YfgL outer 99.2 5.5E-09 1.2E-13 101.1 24.7 273 185-503 67-350 (377)
260 KOG4714 Nucleoporin [Nuclear s 99.2 5.7E-10 1.2E-14 93.5 14.6 200 173-387 39-255 (319)
261 KOG1354 Serine/threonine prote 99.2 7.9E-10 1.7E-14 96.4 15.7 241 213-504 24-315 (433)
262 KOG1832 HIV-1 Vpr-binding prot 99.2 8.9E-12 1.9E-16 121.1 4.3 203 160-392 1091-1297(1516)
263 PLN02919 haloacid dehalogenase 99.2 2.9E-08 6.3E-13 106.5 31.1 212 174-389 571-836 (1057)
264 KOG2041 WD40 repeat protein [G 99.2 1.3E-09 2.8E-14 104.1 18.3 293 170-491 14-337 (1189)
265 KOG1409 Uncharacterized conser 99.2 4.8E-09 1E-13 91.7 20.3 208 163-388 17-229 (404)
266 KOG4547 WD40 repeat-containing 99.2 2.8E-09 6.1E-14 99.8 20.0 189 184-387 6-221 (541)
267 KOG4547 WD40 repeat-containing 99.2 3.3E-10 7.1E-15 106.0 13.5 193 276-492 3-221 (541)
268 COG4946 Uncharacterized protei 99.2 9.9E-08 2.1E-12 87.2 28.2 170 184-375 333-507 (668)
269 KOG0974 WD-repeat protein WDR6 99.2 1.1E-09 2.4E-14 109.0 17.3 193 176-388 93-290 (967)
270 KOG0280 Uncharacterized conser 99.2 5.5E-09 1.2E-13 89.4 18.6 207 170-389 69-287 (339)
271 COG5170 CDC55 Serine/threonine 99.2 2.5E-09 5.5E-14 92.0 16.4 218 169-389 25-312 (460)
272 PF04762 IKI3: IKI3 family; I 99.2 7.1E-08 1.5E-12 101.6 30.6 307 169-492 74-457 (928)
273 KOG0882 Cyclophilin-related pe 99.1 2.6E-09 5.7E-14 96.6 16.7 282 169-497 8-311 (558)
274 KOG1912 WD40 repeat protein [G 99.1 9.9E-09 2.1E-13 99.1 21.0 210 164-387 49-305 (1062)
275 KOG4190 Uncharacterized conser 99.1 5.7E-10 1.2E-14 103.3 12.2 256 100-384 725-986 (1034)
276 PF10282 Lactonase: Lactonase, 99.1 5.7E-08 1.2E-12 92.2 24.9 263 171-453 37-329 (345)
277 KOG2315 Predicted translation 99.1 4E-08 8.6E-13 91.7 22.6 198 169-387 164-391 (566)
278 KOG2041 WD40 repeat protein [G 99.1 2.2E-08 4.7E-13 95.9 19.7 262 108-386 13-337 (1189)
279 COG5354 Uncharacterized protei 99.0 2.3E-07 4.9E-12 85.7 24.5 263 171-481 72-418 (561)
280 KOG3914 WD repeat protein WDR4 99.0 6.6E-09 1.4E-13 92.9 13.8 160 218-392 66-229 (390)
281 KOG0309 Conserved WD40 repeat- 99.0 1.8E-09 3.9E-14 103.4 10.8 297 170-492 24-340 (1081)
282 TIGR03300 assembly_YfgL outer 99.0 2.1E-07 4.6E-12 90.1 25.6 265 184-488 106-376 (377)
283 PLN02919 haloacid dehalogenase 99.0 1.6E-07 3.6E-12 100.8 26.8 217 172-390 625-892 (1057)
284 COG2706 3-carboxymuconate cycl 99.0 2.6E-06 5.6E-11 75.9 29.5 218 166-386 35-274 (346)
285 PF15492 Nbas_N: Neuroblastoma 99.0 4.6E-07 9.9E-12 78.1 23.7 243 220-505 3-273 (282)
286 TIGR02658 TTQ_MADH_Hv methylam 99.0 5.4E-07 1.2E-11 83.4 25.0 245 178-456 53-338 (352)
287 KOG3914 WD repeat protein WDR4 99.0 1.4E-08 3E-13 90.9 13.9 169 269-503 65-235 (390)
288 PF04762 IKI3: IKI3 family; I 98.9 1.6E-06 3.5E-11 91.6 30.2 214 164-389 204-459 (928)
289 COG4946 Uncharacterized protei 98.9 5.7E-07 1.2E-11 82.4 22.0 191 179-390 275-481 (668)
290 KOG2314 Translation initiation 98.9 4.9E-07 1.1E-11 84.4 21.8 267 195-492 192-526 (698)
291 KOG1645 RING-finger-containing 98.9 7.9E-08 1.7E-12 86.0 16.1 272 195-492 175-462 (463)
292 PF15492 Nbas_N: Neuroblastoma 98.9 3.7E-07 8E-12 78.7 19.5 194 173-390 46-263 (282)
293 KOG0309 Conserved WD40 repeat- 98.9 1.3E-08 2.7E-13 97.8 11.7 212 164-387 108-340 (1081)
294 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 84.8 24.3 191 172-386 189-400 (419)
295 COG5170 CDC55 Serine/threonine 98.9 3.8E-08 8.3E-13 84.9 12.0 240 213-504 25-323 (460)
296 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.4E-11 74.6 19.4 267 192-492 51-332 (344)
297 KOG4714 Nucleoporin [Nuclear s 98.8 5E-08 1.1E-12 82.1 10.6 164 166-343 85-255 (319)
298 PRK11138 outer membrane biogen 98.8 3.4E-06 7.3E-11 82.0 24.7 274 185-501 71-363 (394)
299 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 3.9E-13 61.1 5.7 38 161-199 2-39 (39)
300 KOG1008 Uncharacterized conser 98.8 3.5E-09 7.5E-14 100.1 2.5 205 170-387 56-276 (783)
301 KOG1645 RING-finger-containing 98.7 5.9E-07 1.3E-11 80.6 15.8 84 164-249 187-270 (463)
302 KOG2695 WD40 repeat protein [G 98.7 4.4E-08 9.6E-13 85.8 8.2 161 221-392 218-382 (425)
303 PRK04043 tolB translocation pr 98.7 1.6E-05 3.5E-10 77.0 26.5 174 193-390 169-361 (419)
304 KOG1832 HIV-1 Vpr-binding prot 98.7 2.6E-08 5.6E-13 97.7 6.3 217 211-479 1098-1318(1516)
305 KOG1912 WD40 repeat protein [G 98.7 2E-06 4.4E-11 83.7 18.6 221 165-390 104-368 (1062)
306 PF08450 SGL: SMP-30/Gluconola 98.7 8.7E-05 1.9E-09 67.0 28.3 199 175-390 4-216 (246)
307 PF08553 VID27: VID27 cytoplas 98.7 2E-05 4.3E-10 80.2 25.8 139 235-386 502-647 (794)
308 KOG2695 WD40 repeat protein [G 98.7 6.3E-08 1.4E-12 84.9 7.1 158 282-504 228-389 (425)
309 PF13360 PQQ_2: PQQ-like domai 98.6 6E-06 1.3E-10 74.3 20.2 224 192-453 2-235 (238)
310 KOG3621 WD40 repeat-containing 98.6 4.1E-06 9E-11 80.9 19.3 147 169-320 32-179 (726)
311 KOG2066 Vacuolar assembly/sort 98.6 9.3E-07 2E-11 86.4 14.9 186 171-387 40-234 (846)
312 PF07433 DUF1513: Protein of u 98.6 4.7E-05 1E-09 68.1 24.0 245 216-491 6-285 (305)
313 PRK11138 outer membrane biogen 98.6 5.1E-05 1.1E-09 73.8 26.6 265 185-490 122-393 (394)
314 PF08553 VID27: VID27 cytoplas 98.6 2.3E-06 5.1E-11 86.7 17.4 139 191-341 502-646 (794)
315 KOG2066 Vacuolar assembly/sort 98.6 2E-06 4.4E-11 84.2 15.9 191 214-448 39-233 (846)
316 PF08450 SGL: SMP-30/Gluconola 98.6 2.9E-05 6.3E-10 70.1 22.5 224 219-479 4-242 (246)
317 PF13360 PQQ_2: PQQ-like domai 98.6 3.7E-06 8E-11 75.7 16.6 230 236-497 2-236 (238)
318 KOG0882 Cyclophilin-related pe 98.6 1.6E-06 3.5E-11 79.0 13.3 233 212-503 7-243 (558)
319 KOG1920 IkappaB kinase complex 98.5 5.4E-05 1.2E-09 78.0 24.7 212 169-389 67-325 (1265)
320 KOG1275 PAB-dependent poly(A) 98.5 3.9E-06 8.4E-11 83.3 15.9 183 184-385 148-341 (1118)
321 PF07433 DUF1513: Protein of u 98.5 0.00017 3.6E-09 64.7 24.2 206 173-392 7-253 (305)
322 PF06433 Me-amine-dh_H: Methyl 98.5 1.4E-05 3.1E-10 72.2 17.6 284 193-502 17-331 (342)
323 PF11768 DUF3312: Protein of u 98.5 0.00026 5.7E-09 67.9 26.3 118 313-452 207-333 (545)
324 KOG2114 Vacuolar assembly/sort 98.4 5.9E-05 1.3E-09 74.8 21.9 203 172-387 27-244 (933)
325 cd00216 PQQ_DH Dehydrogenases 98.4 9E-05 2E-09 73.9 23.7 296 185-504 63-437 (488)
326 PRK02888 nitrous-oxide reducta 98.4 6.2E-05 1.4E-09 73.8 21.0 233 181-449 140-405 (635)
327 PF00400 WD40: WD domain, G-be 98.4 1.2E-06 2.6E-11 52.9 6.2 37 205-243 3-39 (39)
328 PF11768 DUF3312: Protein of u 98.4 5.4E-05 1.2E-09 72.4 19.8 93 291-388 239-331 (545)
329 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00057 1.2E-08 58.4 23.2 147 178-341 18-164 (354)
330 KOG1275 PAB-dependent poly(A) 98.4 1E-05 2.2E-10 80.5 14.4 152 172-341 179-341 (1118)
331 KOG1920 IkappaB kinase complex 98.3 0.00015 3.3E-09 74.9 22.1 200 268-492 70-323 (1265)
332 PF06977 SdiA-regulated: SdiA- 98.3 0.00052 1.1E-08 60.6 22.6 212 164-383 15-247 (248)
333 KOG3617 WD40 and TPR repeat-co 98.3 1.4E-05 3E-10 78.9 13.4 70 173-245 62-131 (1416)
334 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0033 7.2E-08 63.0 30.6 304 185-504 71-503 (527)
335 PF14583 Pectate_lyase22: Olig 98.2 0.00093 2E-08 62.0 23.4 198 177-389 42-275 (386)
336 cd00216 PQQ_DH Dehydrogenases 98.2 0.00074 1.6E-08 67.4 24.5 249 185-460 112-436 (488)
337 KOG2114 Vacuolar assembly/sort 98.2 0.00032 6.9E-09 69.9 20.4 155 221-386 30-201 (933)
338 PF00780 CNH: CNH domain; Int 98.1 0.0042 9.1E-08 57.2 26.1 248 227-510 7-274 (275)
339 KOG1008 Uncharacterized conser 98.1 1.7E-06 3.6E-11 82.5 2.8 209 215-448 57-275 (783)
340 PF00780 CNH: CNH domain; Int 98.1 0.00089 1.9E-08 61.6 20.8 241 184-460 8-267 (275)
341 PF06977 SdiA-regulated: SdiA- 98.1 0.0034 7.5E-08 55.5 22.9 165 211-385 18-200 (248)
342 PF04841 Vps16_N: Vps16, N-ter 98.1 0.013 2.8E-07 56.9 29.1 200 194-417 62-270 (410)
343 KOG3617 WD40 and TPR repeat-co 98.0 5.9E-05 1.3E-09 74.6 11.3 109 218-342 19-131 (1416)
344 COG0823 TolB Periplasmic compo 98.0 0.00053 1.1E-08 66.2 17.3 193 165-377 187-390 (425)
345 COG3391 Uncharacterized conser 98.0 0.0033 7.1E-08 60.6 22.8 204 172-390 75-287 (381)
346 PF02897 Peptidase_S9_N: Proly 98.0 0.013 2.8E-07 57.6 27.6 203 172-386 125-357 (414)
347 KOG3621 WD40 repeat-containing 98.0 0.00026 5.5E-09 69.0 14.7 116 269-387 36-155 (726)
348 KOG2395 Protein involved in va 97.9 0.0003 6.6E-09 66.2 13.7 148 184-342 347-500 (644)
349 PF03178 CPSF_A: CPSF A subuni 97.9 0.0028 6.1E-08 59.7 20.8 185 184-383 43-262 (321)
350 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0027 5.8E-08 60.7 20.5 263 192-479 22-344 (353)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.011 2.3E-07 59.5 25.2 158 185-346 122-337 (527)
352 PRK02888 nitrous-oxide reducta 97.9 0.0034 7.3E-08 62.1 20.7 190 176-387 198-405 (635)
353 KOG2444 WD40 repeat protein [G 97.9 1E-05 2.2E-10 67.6 2.9 143 327-492 33-178 (238)
354 PF08596 Lgl_C: Lethal giant l 97.8 0.0052 1.1E-07 58.8 20.9 211 172-388 3-292 (395)
355 COG3391 Uncharacterized conser 97.8 0.044 9.6E-07 52.9 26.9 275 195-503 13-295 (381)
356 COG3204 Uncharacterized protei 97.7 0.013 2.9E-07 51.6 19.9 173 166-342 81-263 (316)
357 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0059 1.3E-07 45.6 14.9 101 173-291 2-109 (111)
358 PF05096 Glu_cyclase_2: Glutam 97.7 0.031 6.6E-07 49.4 21.4 185 172-374 46-249 (264)
359 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 43.4 5.1 37 162-199 4-40 (40)
360 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.033 7.1E-07 48.1 23.7 146 222-386 18-165 (354)
361 PF03178 CPSF_A: CPSF A subuni 97.6 0.015 3.3E-07 54.8 20.1 178 194-386 3-202 (321)
362 PF02897 Peptidase_S9_N: Proly 97.6 0.02 4.3E-07 56.3 21.7 250 217-495 126-408 (414)
363 PF04053 Coatomer_WDAD: Coatom 97.5 0.034 7.3E-07 54.1 21.6 143 213-386 31-173 (443)
364 KOG4640 Anaphase-promoting com 97.5 0.00062 1.3E-08 65.6 8.9 96 214-321 20-115 (665)
365 PF08596 Lgl_C: Lethal giant l 97.4 0.0038 8.2E-08 59.7 14.0 211 164-385 80-334 (395)
366 COG3490 Uncharacterized protei 97.4 0.072 1.6E-06 46.8 20.7 131 178-331 43-180 (366)
367 COG0823 TolB Periplasmic compo 97.4 0.011 2.4E-07 57.2 16.5 157 213-388 191-360 (425)
368 KOG2395 Protein involved in va 97.4 0.023 5E-07 54.1 17.5 145 227-386 345-500 (644)
369 KOG1897 Damage-specific DNA bi 97.3 0.25 5.5E-06 51.1 26.1 286 170-490 530-897 (1096)
370 KOG4640 Anaphase-promoting com 97.3 0.0013 2.9E-08 63.4 9.4 79 171-253 21-100 (665)
371 PF04053 Coatomer_WDAD: Coatom 97.3 0.013 2.7E-07 57.0 15.9 183 166-382 28-219 (443)
372 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.047 1E-06 40.9 14.9 100 269-381 2-109 (111)
373 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.037 8.1E-07 52.9 17.5 216 236-479 22-297 (353)
374 PRK13616 lipoprotein LpqB; Pro 97.1 0.07 1.5E-06 54.2 19.8 199 171-380 350-562 (591)
375 COG3204 Uncharacterized protei 97.1 0.063 1.4E-06 47.5 16.2 165 212-386 83-263 (316)
376 KOG2079 Vacuolar assembly/sort 97.0 0.013 2.9E-07 60.5 13.6 102 184-292 100-201 (1206)
377 KOG2444 WD40 repeat protein [G 97.0 0.0014 3E-08 55.3 5.4 105 277-386 69-177 (238)
378 COG3386 Gluconolactonase [Carb 97.0 0.2 4.4E-06 46.2 19.8 226 221-481 31-274 (307)
379 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.26 5.6E-06 44.2 21.0 221 268-503 24-291 (336)
380 KOG4441 Proteins containing BT 97.0 0.11 2.4E-06 52.8 19.5 189 184-389 286-502 (571)
381 PF15390 DUF4613: Domain of un 97.0 0.43 9.4E-06 46.7 22.7 152 168-331 54-220 (671)
382 KOG4441 Proteins containing BT 96.9 0.08 1.7E-06 53.8 18.2 226 227-494 285-549 (571)
383 KOG3630 Nuclear pore complex, 96.9 0.014 3.1E-07 60.6 12.5 117 268-386 102-228 (1405)
384 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.6E-08 37.1 5.1 32 211-243 9-40 (40)
385 KOG1897 Damage-specific DNA bi 96.8 0.84 1.8E-05 47.6 28.3 295 185-499 501-864 (1096)
386 PF04841 Vps16_N: Vps16, N-ter 96.8 0.59 1.3E-05 45.6 22.9 195 171-384 81-285 (410)
387 PHA02713 hypothetical protein; 96.7 0.092 2E-06 53.4 17.2 190 184-389 305-536 (557)
388 KOG1916 Nuclear protein, conta 96.7 0.00014 3.1E-09 72.6 -2.8 216 192-453 110-328 (1283)
389 COG3490 Uncharacterized protei 96.7 0.11 2.5E-06 45.6 14.7 201 164-384 113-346 (366)
390 PF14870 PSII_BNR: Photosynthe 96.7 0.37 7.9E-06 44.3 18.8 160 168-339 142-301 (302)
391 KOG2079 Vacuolar assembly/sort 96.7 0.0096 2.1E-07 61.5 9.3 105 277-386 98-203 (1206)
392 PHA02713 hypothetical protein; 96.5 0.13 2.9E-06 52.3 16.3 61 440-504 480-546 (557)
393 PF06433 Me-amine-dh_H: Methyl 96.5 0.26 5.5E-06 45.4 16.1 173 180-357 144-335 (342)
394 PF12894 Apc4_WD40: Anaphase-p 96.5 0.016 3.5E-07 36.0 5.9 32 355-386 10-41 (47)
395 PF14870 PSII_BNR: Photosynthe 96.4 0.79 1.7E-05 42.1 21.7 158 211-383 141-301 (302)
396 COG3386 Gluconolactonase [Carb 96.4 0.84 1.8E-05 42.2 20.7 199 176-390 30-246 (307)
397 PF12894 Apc4_WD40: Anaphase-p 96.3 0.016 3.5E-07 35.9 5.4 34 213-248 10-43 (47)
398 PF10647 Gmad1: Lipoprotein Lp 96.3 0.69 1.5E-05 41.7 18.2 149 216-378 25-187 (253)
399 TIGR03074 PQQ_membr_DH membran 96.2 1.4 3E-05 46.5 22.1 75 227-302 194-284 (764)
400 PF05694 SBP56: 56kDa selenium 96.2 0.84 1.8E-05 43.4 18.4 162 179-350 138-350 (461)
401 COG5276 Uncharacterized conser 96.2 0.83 1.8E-05 40.7 26.9 157 213-386 85-241 (370)
402 PF05694 SBP56: 56kDa selenium 96.2 0.56 1.2E-05 44.6 17.0 153 227-383 87-274 (461)
403 KOG2280 Vacuolar assembly/sort 96.0 1.2 2.5E-05 45.2 19.1 227 170-418 43-271 (829)
404 PRK13616 lipoprotein LpqB; Pro 96.0 0.46 1E-05 48.4 17.0 149 215-385 350-524 (591)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.9 4E-05 41.7 25.4 73 427-502 319-409 (415)
406 PF14761 HPS3_N: Hermansky-Pud 95.8 0.57 1.2E-05 40.0 13.7 106 279-389 29-166 (215)
407 PF10647 Gmad1: Lipoprotein Lp 95.7 1.5 3.3E-05 39.5 20.5 151 172-334 25-187 (253)
408 PF14583 Pectate_lyase22: Olig 95.7 1.9 4.2E-05 40.6 19.6 184 175-377 85-303 (386)
409 KOG4499 Ca2+-binding protein R 95.7 1.2 2.7E-05 38.2 16.0 46 469-514 218-264 (310)
410 PF08728 CRT10: CRT10; InterP 95.6 1 2.2E-05 46.2 17.4 117 268-385 102-245 (717)
411 PF05096 Glu_cyclase_2: Glutam 95.6 1.5 3.3E-05 39.0 23.2 155 215-387 45-204 (264)
412 PF10168 Nup88: Nuclear pore c 95.5 1.4 3.1E-05 45.9 18.6 74 172-247 86-181 (717)
413 COG3823 Glutamine cyclotransfe 95.5 0.93 2E-05 38.2 13.5 175 184-374 57-247 (262)
414 PRK10115 protease 2; Provision 95.4 4.3 9.2E-05 42.7 25.3 196 172-385 128-343 (686)
415 PHA03098 kelch-like protein; P 95.4 0.91 2E-05 46.4 17.0 188 184-388 296-513 (534)
416 PF10313 DUF2415: Uncharacteri 95.3 0.086 1.9E-06 31.7 5.4 33 215-247 1-35 (43)
417 PF14761 HPS3_N: Hermansky-Pud 95.3 1.2 2.6E-05 38.0 14.1 144 228-385 29-213 (215)
418 KOG1898 Splicing factor 3b, su 95.3 4 8.6E-05 43.2 20.0 80 169-248 581-676 (1205)
419 COG5167 VID27 Protein involved 95.2 2.2 4.7E-05 41.2 16.8 144 185-342 482-632 (776)
420 PF15390 DUF4613: Domain of un 95.2 2.5 5.5E-05 41.7 17.5 155 172-342 21-186 (671)
421 PHA02790 Kelch-like protein; P 94.8 1.8 3.9E-05 43.4 16.6 185 184-388 273-472 (480)
422 PF08728 CRT10: CRT10; InterP 94.8 1.9 4E-05 44.4 16.4 157 184-341 50-245 (717)
423 KOG3630 Nuclear pore complex, 94.8 0.15 3.3E-06 53.5 8.8 146 172-329 102-260 (1405)
424 KOG4499 Ca2+-binding protein R 94.8 1.3 2.7E-05 38.2 12.6 147 172-330 110-272 (310)
425 PF10168 Nup88: Nuclear pore c 94.6 0.69 1.5E-05 48.2 13.2 75 312-388 85-181 (717)
426 PF10313 DUF2415: Uncharacteri 94.3 0.24 5.2E-06 29.8 5.4 31 313-343 2-34 (43)
427 TIGR03074 PQQ_membr_DH membran 94.3 8.6 0.00019 40.8 22.7 207 185-393 196-484 (764)
428 PRK13684 Ycf48-like protein; P 94.2 5.3 0.00011 37.8 17.8 158 170-341 172-330 (334)
429 TIGR03118 PEPCTERM_chp_1 conse 93.9 4.9 0.00011 36.4 21.9 209 172-391 24-284 (336)
430 KOG1900 Nuclear pore complex, 93.8 2.8 6.2E-05 45.4 15.6 157 218-387 82-273 (1311)
431 PHA03098 kelch-like protein; P 93.6 3.3 7.1E-05 42.4 16.2 149 227-390 295-468 (534)
432 COG3823 Glutamine cyclotransfe 93.4 4.3 9.4E-05 34.4 14.2 108 227-350 56-166 (262)
433 TIGR02604 Piru_Ver_Nterm putat 93.3 4.3 9.3E-05 39.1 15.4 149 171-331 14-202 (367)
434 PF12234 Rav1p_C: RAVE protein 93.2 3.2 6.9E-05 42.3 14.5 115 172-296 31-156 (631)
435 PF14655 RAB3GAP2_N: Rab3 GTPa 93.1 1.5 3.3E-05 42.3 11.7 92 162-255 299-408 (415)
436 PF13449 Phytase-like: Esteras 92.9 8.4 0.00018 36.4 23.4 157 169-329 18-231 (326)
437 PF12234 Rav1p_C: RAVE protein 92.8 2.6 5.6E-05 42.9 13.2 104 227-341 41-155 (631)
438 KOG2377 Uncharacterized conser 92.7 9.7 0.00021 36.5 19.6 156 174-342 26-185 (657)
439 KOG1983 Tomosyn and related SN 92.7 2.5 5.4E-05 46.1 13.9 31 172-203 37-67 (993)
440 COG5167 VID27 Protein involved 92.6 4 8.6E-05 39.5 13.2 143 227-386 479-632 (776)
441 PF14727 PHTB1_N: PTHB1 N-term 92.0 12 0.00027 36.2 23.9 150 180-341 34-203 (418)
442 KOG1900 Nuclear pore complex, 91.9 5.1 0.00011 43.6 14.4 164 174-343 82-273 (1311)
443 PHA02790 Kelch-like protein; P 91.8 6.6 0.00014 39.4 15.0 145 227-389 272-426 (480)
444 KOG2377 Uncharacterized conser 91.7 5.3 0.00011 38.2 12.7 116 268-388 68-187 (657)
445 TIGR03548 mutarot_permut cycli 91.6 12 0.00026 35.2 16.4 106 184-299 74-197 (323)
446 KOG4460 Nuclear pore complex, 91.6 1.8 4E-05 41.8 9.9 76 313-389 105-201 (741)
447 PLN02193 nitrile-specifier pro 91.4 16 0.00034 36.6 17.1 150 184-344 177-353 (470)
448 TIGR02604 Piru_Ver_Nterm putat 91.2 8.9 0.00019 36.9 14.8 159 313-481 15-202 (367)
449 PF10214 Rrn6: RNA polymerase 91.2 24 0.00052 37.9 23.1 172 168-343 77-277 (765)
450 PF07995 GSDH: Glucose / Sorbo 91.2 14 0.0003 35.0 22.2 109 172-285 3-132 (331)
451 PF07569 Hira: TUP1-like enhan 90.6 3 6.4E-05 36.6 9.9 72 313-388 14-97 (219)
452 PF07569 Hira: TUP1-like enhan 90.5 2 4.4E-05 37.6 8.7 70 227-297 22-96 (219)
453 COG4590 ABC-type uncharacteriz 90.4 0.64 1.4E-05 43.9 5.7 74 268-343 222-300 (733)
454 PF03022 MRJP: Major royal jel 89.9 16 0.00034 33.7 19.5 202 172-374 2-253 (287)
455 PTZ00415 transmission-blocking 89.8 0.12 2.5E-06 56.5 0.6 11 172-182 396-406 (2849)
456 PLN02153 epithiospecifier prot 89.2 21 0.00045 34.0 17.7 64 184-250 34-114 (341)
457 KOG1916 Nuclear protein, conta 89.0 0.21 4.5E-06 51.2 1.6 78 164-245 174-265 (1283)
458 KOG2247 WD40 repeat-containing 88.9 0.076 1.6E-06 50.4 -1.3 144 215-378 35-180 (615)
459 KOG4460 Nuclear pore complex, 88.6 13 0.00028 36.4 12.8 32 313-344 167-200 (741)
460 PLN00033 photosystem II stabil 88.5 25 0.00055 34.1 18.6 153 171-339 239-396 (398)
461 COG5276 Uncharacterized conser 88.4 19 0.00041 32.5 24.2 195 171-387 87-286 (370)
462 KOG1896 mRNA cleavage and poly 88.4 22 0.00047 38.8 15.3 145 184-341 1047-1212(1366)
463 PF14781 BBS2_N: Ciliary BBSom 88.3 11 0.00023 29.7 11.4 124 362-498 4-132 (136)
464 KOG1898 Splicing factor 3b, su 88.3 26 0.00056 37.6 15.5 135 192-341 911-1047(1205)
465 KOG4659 Uncharacterized conser 88.3 46 0.001 36.9 17.5 87 165-254 342-436 (1899)
466 PF10214 Rrn6: RNA polymerase 88.2 41 0.00088 36.2 26.7 167 212-388 77-278 (765)
467 PF07676 PD40: WD40-like Beta 87.8 2.4 5.3E-05 24.9 5.2 32 167-198 5-38 (39)
468 PF10446 DUF2457: Protein of u 87.5 0.11 2.3E-06 48.7 -1.3 8 228-235 193-200 (458)
469 PRK13684 Ycf48-like protein; P 87.4 27 0.00058 33.1 21.8 157 213-384 171-329 (334)
470 KOG2063 Vacuolar assembly/sort 87.0 47 0.001 35.6 20.2 69 178-249 22-100 (877)
471 COG4590 ABC-type uncharacteriz 87.0 5.6 0.00012 38.0 9.3 169 211-389 217-389 (733)
472 TIGR03606 non_repeat_PQQ dehyd 86.9 34 0.00073 33.8 15.3 61 164-225 23-89 (454)
473 TIGR03548 mutarot_permut cycli 86.8 28 0.00061 32.8 18.6 107 227-343 73-195 (323)
474 PF11715 Nup160: Nucleoporin N 86.2 2.8 6E-05 43.0 7.9 68 323-390 157-252 (547)
475 PF11081 DUF2890: Protein of u 86.1 0.33 7.1E-06 40.1 0.9 8 1-8 1-8 (187)
476 COG4257 Vgb Streptogramin lyas 85.9 25 0.00055 31.4 17.4 192 171-387 62-263 (353)
477 KOG2247 WD40 repeat-containing 85.8 0.12 2.5E-06 49.1 -2.0 149 169-335 33-181 (615)
478 PF14781 BBS2_N: Ciliary BBSom 85.3 16 0.00035 28.7 12.0 109 273-386 5-125 (136)
479 TIGR03606 non_repeat_PQQ dehyd 84.9 42 0.00092 33.1 18.6 61 215-278 30-90 (454)
480 PF12657 TFIIIC_delta: Transcr 84.8 6 0.00013 33.2 8.0 31 216-246 87-122 (173)
481 KOG1983 Tomosyn and related SN 84.6 14 0.0003 40.6 12.4 29 269-297 38-66 (993)
482 PF12657 TFIIIC_delta: Transcr 84.2 11 0.00024 31.6 9.3 31 357-387 86-122 (173)
483 PF07250 Glyoxal_oxid_N: Glyox 83.7 28 0.00062 30.9 11.8 140 239-390 48-201 (243)
484 PF08801 Nucleoporin_N: Nup133 83.5 48 0.001 32.7 16.9 31 357-387 190-220 (422)
485 PF02333 Phytase: Phytase; In 83.2 44 0.00096 32.0 20.4 152 227-386 68-237 (381)
486 COG5290 IkappaB kinase complex 82.9 54 0.0012 34.2 14.4 124 316-449 251-390 (1243)
487 PF02333 Phytase: Phytase; In 82.8 46 0.00099 31.9 21.3 195 184-387 69-291 (381)
488 PF07995 GSDH: Glucose / Sorbo 82.6 44 0.00096 31.6 22.0 110 216-331 3-132 (331)
489 PF13449 Phytase-like: Esteras 82.3 45 0.00098 31.5 17.9 158 213-373 18-231 (326)
490 PLN00033 photosystem II stabil 81.8 53 0.0011 31.9 18.5 110 268-383 282-396 (398)
491 PF10433 MMS1_N: Mono-function 80.8 59 0.0013 33.0 14.8 106 227-341 222-341 (504)
492 TIGR02276 beta_rpt_yvtn 40-res 80.3 9 0.0002 22.7 5.6 31 180-210 1-31 (42)
493 PF11635 Med16: Mediator compl 80.1 90 0.002 33.5 20.2 203 178-381 56-345 (753)
494 TIGR03547 muta_rot_YjhT mutatr 80.1 56 0.0012 31.1 17.2 185 181-378 63-332 (346)
495 PF12768 Rax2: Cortical protei 79.9 41 0.00088 30.8 11.8 118 195-321 18-146 (281)
496 PTZ00415 transmission-blocking 79.8 1.1 2.4E-05 49.6 2.0 50 4-53 146-195 (2849)
497 PF07676 PD40: WD40-like Beta 79.0 2.9 6.4E-05 24.5 3.0 20 469-488 15-38 (39)
498 PF11715 Nup160: Nucleoporin N 79.0 18 0.00038 37.2 10.5 91 163-255 136-258 (547)
499 TIGR02276 beta_rpt_yvtn 40-res 78.9 9.9 0.00021 22.5 5.4 42 224-275 1-42 (42)
500 COG5308 NUP170 Nuclear pore co 78.9 33 0.00072 36.2 11.6 204 190-397 99-363 (1263)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-47 Score=329.84 Aligned_cols=329 Identities=19% Similarity=0.295 Sum_probs=278.6
Q ss_pred eeccCCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.||. .+.|.++.+....+++++.+.+.++|+...+-. .++.++|...|.|++|+||
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------------~~t~KgH~~WVlcvawsPD 168 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------------LFTCKGHKNWVLCVAWSPD 168 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------------ceeecCCccEEEEEEECCC
Confidence 34678999 667777777778999999999999998554333 2578899999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC----CCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN----DGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
| +.||+|+.||+|++||..++++......+|...|++++|.|-+ .++|++++.||.|+|||+..+.++..+..|.
T Consensus 169 g-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 169 G-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred c-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 9 7899999999999999999998888889999999999998742 6789999999999999999999999887776
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC-----------C-----
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN-----------P----- 321 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~-----------p----- 321 (546)
. +|+|+.|.-+ .+|++|+.|++|++|+...+..... +..|.| .|+.++.+ |
T Consensus 248 ~---------~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~-lkGHah--wvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 248 A---------SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRE-LKGHAH--WVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred c---------ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHh-hcccch--heeeeeccchhhhhccccccccccC
Confidence 5 5999999654 5899999999999999988766543 244444 78888776 2
Q ss_pred -------------------CCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 322 -------------------IQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 322 -------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
..+..|++|+.|.++.+|+....+ +++.. .+|...|+.+.|+|+++++|++|.|..|+
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 123359999999999999986433 23433 38999999999999999999999999999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
+|+-++|+.+.. +.+|.. .+.++|+.+ .++++ +|+.|.+++||++++.++...+.+|.
T Consensus 393 LW~g~tGk~las---------fRGHv~~VYqvawsaD---------sRLlV---S~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 393 LWDGRTGKFLAS---------FRGHVAAVYQVAWSAD---------SRLLV---SGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred eeeCCCcchhhh---------hhhccceeEEEEeccC---------ccEEE---EcCCCceEEEEEeeeeeecccCCCCC
Confidence 999999998554 333443 368999998 77777 89999999999999999999998887
Q ss_pred CCcccceeeecCCCcEEEEec-CCcEEEEc
Q 009022 461 ITTISPVNKLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 461 ~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd 489 (546)
..+.++ .|+|||..+++|+ |..+++|.
T Consensus 452 -DEVf~v-DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 -DEVFAV-DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -ceEEEE-EecCCCceeecCCCceEEEeec
Confidence 788888 9999999999999 99999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-46 Score=324.33 Aligned_cols=309 Identities=18% Similarity=0.300 Sum_probs=260.4
Q ss_pred CCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 158 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 158 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
|-..|-..+.||.++|.|++|+|+| ..|++|+.|.++|+||+.+.....+. ++|...|.|++|+|+ +..|++|+.||
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD-gk~iASG~~dg 179 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD-GKKIASGSKDG 179 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC-cchhhccccCC
Confidence 4456777899999999999999999 78999999999999999998888888 799999999999999 99999999999
Q ss_pred eEEEEECCCCceee-eeecCCCCCCCCCcccceEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC
Q 009022 238 TVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINP-----EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 311 (546)
Q Consensus 238 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 311 (546)
+|++||..+|+.+. .+..|.. .|++++|.| ..++|++++.||.|+|||+..+... ....+|.
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K---------~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~---~~lsgHT 247 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKK---------WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV---RTLSGHT 247 (480)
T ss_pred eEEEecCCCCCcccccccCccc---------ceeEEeecccccCCCccceecccCCCCEEEEEccCceEE---EEeccCc
Confidence 99999999987654 3333332 499999965 6789999999999999999876543 3567788
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEe-----------CCCC----------
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFS-----------PSGS---------- 369 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~-----------p~~~---------- 369 (546)
.+|+|+.|- ...+|++|+.|++|++|+...+.. ...+ +|...|+.++.+ |.++
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~---~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKL---CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEccchhH---HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 899999997 357999999999999999975443 3333 799999999877 3233
Q ss_pred ---------------EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeec
Q 009022 370 ---------------KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISEN 433 (546)
Q Consensus 370 ---------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~ 433 (546)
.|++|+.|.++.+|+....+. + .....+|.. ...+.|+|+ ++|++
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--p------i~rmtgHq~lVn~V~fSPd---------~r~IA-- 383 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--P------ITRMTGHQALVNHVSFSPD---------GRYIA-- 383 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEeccccccc--c------hhhhhchhhheeeEEECCC---------ccEEE--
Confidence 499999999999998754331 1 011122222 247899999 99999
Q ss_pred CCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 434 YNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 434 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
+++-|..|++|+..+|+.+.+|.+|- ..++.+ +|+.|.++|++|| |.+++||++++.++...+.+|...+.|
T Consensus 384 -SaSFDkSVkLW~g~tGk~lasfRGHv-~~VYqv-awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 384 -SASFDKSVKLWDGRTGKFLASFRGHV-AAVYQV-AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred -EeecccceeeeeCCCcchhhhhhhcc-ceeEEE-EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999999887 888888 9999999999999 999999999999999999999988766
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=316.22 Aligned_cols=283 Identities=21% Similarity=0.305 Sum_probs=247.8
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEEECCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 246 (546)
|-+.+|..+.|++++ ..||||+.+|.++||+..+......+ .+|...|.++.|+|. .+..+++|+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 567799999999999 79999999999999999998777777 799999999999998 467999999999999999999
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
...+..+..|.. .|..++|+|+|++|++++.|.+-++||++++.... ...+|...|.+++|.| +|.+
T Consensus 251 e~~l~~l~gH~~---------RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL---~QEGHs~~v~~iaf~~-DGSL 317 (459)
T KOG0272|consen 251 ETPLQDLEGHLA---------RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL---LQEGHSKGVFSIAFQP-DGSL 317 (459)
T ss_pred Ccchhhhhcchh---------hheeeeecCCCceeeecccccchhhcccccchhhH---hhcccccccceeEecC-CCce
Confidence 888888877654 58999999999999999999999999999976543 4456777999999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
+++|+.|..-+|||+|++.. .+...+|...|.+|.|+|+|..|||||.|++++|||++...... .+..|
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---------~ipAH 386 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---------TIPAH 386 (459)
T ss_pred eeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---------ecccc
Confidence 99999999999999998665 33334899999999999999999999999999999998765522 11222
Q ss_pred CCc-eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCc
Q 009022 407 LTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 484 (546)
Q Consensus 407 ~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~ 484 (546)
... ..+.|+|.. |.+++ +++.|++++||...++.+++++.||. +.|.++ .++|++.+++|++ |.+
T Consensus 387 ~nlVS~Vk~~p~~--------g~fL~---TasyD~t~kiWs~~~~~~~ksLaGHe-~kV~s~-Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 387 SNLVSQVKYSPQE--------GYFLV---TASYDNTVKIWSTRTWSPLKSLAGHE-GKVISL-DISPDSQAIATSSFDRT 453 (459)
T ss_pred cchhhheEecccC--------CeEEE---EcccCcceeeecCCCcccchhhcCCc-cceEEE-EeccCCceEEEeccCce
Confidence 222 357888853 88888 89999999999999999999999998 777788 9999999999999 999
Q ss_pred EEEEc
Q 009022 485 IFIWR 489 (546)
Q Consensus 485 i~vwd 489 (546)
|++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=277.24 Aligned_cols=288 Identities=19% Similarity=0.268 Sum_probs=240.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
++|+||.+.|.++.|+++. ++|++++.||.+.|||.-+......+ +.....|..++|+|. ++++++|+.|+...||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC-CCeEEecCcCceeEEEe
Confidence 6899999999999999999 78999999999999999887766666 567889999999999 99999999999999999
Q ss_pred CCCCc------eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 244 LETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 244 ~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
+.+.. ..+.+..| .. .+.++.|.+ ...|++++.|.+..+||+.+++... .+++|.+.|.++
T Consensus 126 ls~~d~~g~~~v~r~l~gH-------tg--ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~sl 192 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGH-------TG--YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSL 192 (343)
T ss_pred cccccccccceeeeeecCc-------cc--eeEEEEEcC-CCceEecCCCceEEEEEcccceEEE---EecCCcccEEEE
Confidence 98652 22223222 22 488888987 5678999999999999999987654 678888999999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
.++|.+++.+++|+-|+..+|||+|.+...+.+ .+|...|+++.|.|+|.-|++|+.|+++++||++..+.+....
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--
Confidence 999989999999999999999999976543332 3899999999999999999999999999999999765432211
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEE
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL 477 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 477 (546)
+ -.......+++|+.. |+++. .|..|.++.|||.-.++.+..|.+|. ..|.++ ..+|||.-|
T Consensus 269 ---~-~~~~~gitSv~FS~S---------GRlLf---agy~d~~c~vWDtlk~e~vg~L~GHe-NRvScl-~~s~DG~av 330 (343)
T KOG0286|consen 269 ---H-DSIICGITSVAFSKS---------GRLLF---AGYDDFTCNVWDTLKGERVGVLAGHE-NRVSCL-GVSPDGMAV 330 (343)
T ss_pred ---c-CcccCCceeEEEccc---------ccEEE---eeecCCceeEeeccccceEEEeeccC-CeeEEE-EECCCCcEE
Confidence 0 011111235566555 99887 88999999999999999999998887 888888 999999999
Q ss_pred EEec-CCcEEEEc
Q 009022 478 ASGS-SRSIFIWR 489 (546)
Q Consensus 478 ~sgs-dg~i~vwd 489 (546)
+||| |.+|+||.
T Consensus 331 ~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWDSTLRIWA 343 (343)
T ss_pred EecchhHheeecC
Confidence 9999 99999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=270.36 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=237.2
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-----ceeEEecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
...+|.+|++.|+.++..+.+..+|++++.|.++.+|++... .....+ .+|...|..+..+++ ++++++++.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d-g~~alS~swD 84 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD-GNFALSASWD 84 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC-CceEEecccc
Confidence 346789999999999999998889999999999999998753 334445 789999999999999 9999999999
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+.+++||+.+++..+.+..|.. .|.+++|+++.+.|++|+.|.+|.+|+........ +....+...|.|
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~---------dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--~~~~~~~~WVsc 153 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTK---------DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--IHEDSHREWVSC 153 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCC---------ceEEEEecCCCceeecCCCcceeeeeeecccEEEE--EecCCCcCcEEE
Confidence 9999999999999999988876 49999999999999999999999999987643321 111122568999
Q ss_pred EEECCCC-CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 317 LHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 317 ~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
+.|+|.. ..+|++++.|++|++||+++.+.... ..+|.+.++.++++|+|.++++|+.||.+.+||++.++.+.
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly--- 228 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY--- 228 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhc--cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---
Confidence 9999933 67999999999999999987655333 24899999999999999999999999999999999887532
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC-------CCccccee
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN-------ITTISPVN 468 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~-------~~~i~~v~ 468 (546)
.+........++|+|+. |.. +......|+|||+.++.++..+.... ....+-.+
T Consensus 229 ------sl~a~~~v~sl~fspnr----------ywL---~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 229 ------SLEAFDIVNSLCFSPNR----------YWL---CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred ------eccCCCeEeeEEecCCc----------eeE---eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 22333334578999973 222 22333459999999999988775321 12233334
Q ss_pred eecCCCcEEEEec-CCcEEEEcCC
Q 009022 469 KLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 469 ~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
+|+++|..|++|- |+.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999999999 9999999875
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-40 Score=288.05 Aligned_cols=286 Identities=20% Similarity=0.261 Sum_probs=235.8
Q ss_pred eccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC-
Q 009022 104 CKMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT- 181 (546)
Q Consensus 104 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~- 181 (546)
+.-.+.+. +..+.+......+++++-.+..++|. .|+.....+|.||.+.|.++.|+|.
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~-------------------~~~~~~~~~l~gH~~~v~~~~fhP~~ 229 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWS-------------------VPQCNLLQTLRGHTSRVGAAVFHPVD 229 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEee-------------------cCCcceeEEEeccccceeeEEEccCC
Confidence 33344443 33333333446667777666666664 3334445789999999999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
.+.-||||+.||++++|++.+...+..+ .+|...|..++|+|+ |++|++++.|.+-++||+.++..+....+|..
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~--- 304 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELLLQEGHSK--- 304 (459)
T ss_pred CccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCC-CceeeecccccchhhcccccchhhHhhccccc---
Confidence 3467999999999999999998888877 789999999999999 99999999999999999999998887777665
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.|.+++|.++|.++++|+.|..-+|||++++..+. .+.+|..+|.+|.|+| +|..||||+.|++++|||+
T Consensus 305 ------~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 305 ------GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred ------ccceeEecCCCceeeccCccchhheeecccCcEEE---EecccccceeeEeECC-CceEEeecCCCCcEEEeee
Confidence 49999999999999999999999999999987653 5566777999999999 9999999999999999999
Q ss_pred CCCCCCceeee-cCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 342 RRLEAGSSLCD-LPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 342 ~~~~~~~~~~~-~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
+.... +.. .+|..-|+.|.|+| .|.+|+|++.|++++||...++.++.... ++....+++..+|+
T Consensus 375 R~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa--------GHe~kV~s~Dis~d-- 441 (459)
T KOG0272|consen 375 RMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA--------GHEGKVISLDISPD-- 441 (459)
T ss_pred ccccc---ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc--------CCccceEEEEeccC--
Confidence 86554 333 37999999999999 89999999999999999998887644311 22233467888888
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
|.+++ +++.|++|++|.
T Consensus 442 -------~~~i~---t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 -------SQAIA---TSSFDRTIKLWR 458 (459)
T ss_pred -------CceEE---EeccCceeeecc
Confidence 88888 899999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-38 Score=255.96 Aligned_cols=293 Identities=15% Similarity=0.199 Sum_probs=239.9
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce--eeeeecCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWH 261 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~ 261 (546)
-+|++++.|.+||+|...++.+...+ +...+.|+.+...|+ ++.|++++. ..|++||++++.. +..+..+..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k--- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK--- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCC---
Confidence 58999999999999999999999998 556778999999999 888888886 5799999998765 555655543
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.|.++.|..+|+.+++|+.||.++|||++..... ....+..+|+++..+| +...|++|..+|.|++||+
T Consensus 85 ------NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 85 ------NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ------ceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecC-CcceEEeecCCCcEEEEEc
Confidence 4999999999999999999999999999984433 3345557999999999 8888999999999999999
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
.+......+. ......|.++...|+|.+|+.+..-|...+|++-+.....+...+.......++ .+++.++|+
T Consensus 154 ~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--il~C~lSPd---- 226 (311)
T KOG0315|consen 154 GENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH--ILRCLLSPD---- 226 (311)
T ss_pred cCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce--EEEEEECCC----
Confidence 8654322221 135578999999999999999999999999999886554443333222222222 368899999
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCch-hhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCcccee
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~ 499 (546)
++|++ +.+.|.+++||++.+. +.-..+.+|. .-+..+ +||.+|+||+||+ |+.+++|++..++.++..
T Consensus 227 -----~k~la---t~ssdktv~iwn~~~~~kle~~l~gh~-rWvWdc-~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 227 -----VKYLA---TCSSDKTVKIWNTDDFFKLELVLTGHQ-RWVWDC-AFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred -----CcEEE---eecCCceEEEEecCCceeeEEEeecCC-ceEEee-eeccCccEEEecCCCCceeecccccCceeeec
Confidence 99999 8999999999999887 4444566666 667777 8999999999999 999999999999999999
Q ss_pred eccceEEEeec
Q 009022 500 KEEMKIIVCGK 510 (546)
Q Consensus 500 ~~~~~~i~~~~ 510 (546)
.+|-...+|-+
T Consensus 297 ~gh~K~~vc~~ 307 (311)
T KOG0315|consen 297 QGHHKAAVCVA 307 (311)
T ss_pred CCcccccEEEE
Confidence 99988777644
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.2e-38 Score=264.56 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=243.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..+.+|.+.|+.+.|+|+| .+||||+.|..|.+|++..........++|.+.|..+.|.++ ++.|++++.|.+|+.||
T Consensus 41 m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-CCEEEEecCCceEEEEe
Confidence 4578999999999999999 699999999999999987655555445799999999999999 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
+++|+.+..++.+.. .++++.-+.-| .++.+++.|+++++||+++...... ......++++.|..
T Consensus 119 ~~tG~~~rk~k~h~~---------~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----~~~kyqltAv~f~d- 184 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTS---------FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----FENKYQLTAVGFKD- 184 (338)
T ss_pred cccceeeehhccccc---------eeeecCccccCCeEEEecCCCceEEEEeecccchhhc----cccceeEEEEEecc-
Confidence 999999998877654 36776644444 4666788999999999998765543 22334799999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
.+..+.+|+-|+.|++||++.... .....+|...|+.+..+|+|.++.+-+.|.++++||++-.....+.-.+...+.
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 888999999999999999986554 222238999999999999999999999999999999986655444333444444
Q ss_pred CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-
Q 009022 403 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 481 (546)
Q Consensus 403 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs- 481 (546)
.+-....+.+.|+|+ +.++. .|+.|..+++||..+...+..+.||. +.|..+ +|+|...+|.+++
T Consensus 263 hnfeknlL~cswsp~---------~~~i~---ags~dr~vyvwd~~~r~~lyklpGh~-gsvn~~-~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPN---------GTKIT---AGSADRFVYVWDTTSRRILYKLPGHY-GSVNEV-DFHPTEPIILSCSS 328 (338)
T ss_pred hhhhhhcceeeccCC---------CCccc---cccccceEEEeecccccEEEEcCCcc-eeEEEe-eecCCCcEEEEecc
Confidence 443444578999999 66676 79999999999999999999998887 778887 9999999999998
Q ss_pred CCcEEEEc
Q 009022 482 SRSIFIWR 489 (546)
Q Consensus 482 dg~i~vwd 489 (546)
|.+|++=.
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99998743
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=255.97 Aligned_cols=301 Identities=16% Similarity=0.167 Sum_probs=238.8
Q ss_pred eeccCCCcccccccccccc--CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMSCPHRVATE--YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
...+.+|+..+......+. ..+++++++.+.-+|.+..... .....++.|.||...|..+..++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--------------~~G~~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--------------KYGVPVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------ccCceeeeeeccceEecceEEcc
Confidence 4566888866555555543 5678888998888887655422 22344588999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
+| +++++++.|+++++||+.+++....+ .+|...|.+++|+|+ ++.+++|+.|.+|++|++...... ++....
T Consensus 74 dg-~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck~-t~~~~~--- 146 (315)
T KOG0279|consen 74 DG-NFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCKY-TIHEDS--- 146 (315)
T ss_pred CC-ceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCC-CceeecCCCcceeeeeeecccEEE-EEecCC---
Confidence 99 79999999999999999999777777 799999999999999 999999999999999999755433 332211
Q ss_pred CCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 261 HGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
.+ .-|.|+.|+|+ ..+|++++.|+.|++||+++.+... ...+|.+.++.++++| +|.++++|+.||.+.+
T Consensus 147 --~~--~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 147 --HR--EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNTVTVSP-DGSLCASGGKDGEAML 218 (315)
T ss_pred --Cc--CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEEEEECC-CCCEEecCCCCceEEE
Confidence 01 24999999998 7899999999999999999876554 3345667999999999 9999999999999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc-CCcccCCceeEEecCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH-DFNRHLTPFRAEWDPK 417 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ 417 (546)
||++..+ .++.++|...|.+++|+|+.-.|+.+. +..|+|||+.++.++...+.-.... ........+.++|+++
T Consensus 219 wdL~~~k---~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d 294 (315)
T KOG0279|consen 219 WDLNEGK---NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD 294 (315)
T ss_pred EEccCCc---eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC
Confidence 9998544 477789999999999999887776664 5569999999988766544322222 2223344567899998
Q ss_pred CCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 418 DPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 418 ~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
|..+. +|..|+.|++|.+.
T Consensus 295 ---------G~tLf---~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 295 ---------GQTLF---AGYTDNVIRVWQVA 313 (315)
T ss_pred ---------CcEEE---eeecCCcEEEEEee
Confidence 76666 78999999999864
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-36 Score=247.63 Aligned_cols=291 Identities=19% Similarity=0.281 Sum_probs=231.8
Q ss_pred eeeeccccCCCeEEEEEcCC-CCcEEEEEcCCCcEEEEeCCC---CceeEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~-~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
.++.+.+|++.|..++|+|- | .+||||+.|+.|+||+... -.+...+..+|+..|++++|+|. +++|++++.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-CcEEEEeeccc
Confidence 45788999999999999998 7 6999999999999999985 34555565789999999999999 99999999999
Q ss_pred eEEEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 238 TVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 238 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
++.||.-..+ +++..+..|.. .|.+++|+++|++||++++|..|.+|.+.......-.-.+..|...|.
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEn---------EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHEN---------EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred eEEEeecCCCceeEEeeeecccc---------ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 9999986644 45666666654 599999999999999999999999999986554433344566777899
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 394 (546)
.+.|+| ...+|++++.|.+|++|.-.....-.+...+ +|...|.+++|+|.|..|++++.|++|+||.+.+.-.
T Consensus 155 ~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---- 229 (312)
T KOG0645|consen 155 HVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---- 229 (312)
T ss_pred EEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----
Confidence 999999 8999999999999999987644444555555 7888999999999999999999999999998652211
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc------hhhhHhhcCCCCCccccee
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT------GQLVAEVMDPNITTISPVN 468 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~------~~~~~~~~~~~~~~i~~v~ 468 (546)
..+....+.+.|. + | .++ +++.|+.|++|.-.. ..++....+.|...|.++
T Consensus 230 --------~~~sr~~Y~v~W~-~---------~-~Ia---S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV- 286 (312)
T KOG0645|consen 230 --------GMHSRALYDVPWD-N---------G-VIA---SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV- 286 (312)
T ss_pred --------hhcccceEeeeec-c---------c-ceE---eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE-
Confidence 1111122346665 2 2 233 789999999997654 244454555566788888
Q ss_pred eecCC-CcEEEEec-CCcEEEEcCC
Q 009022 469 KLHPR-DDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 469 ~~s~~-~~~l~sgs-dg~i~vwd~~ 491 (546)
+|.|. ..+|++|+ ||.|++|.+.
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEEec
Confidence 99995 67888888 9999999874
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.6e-37 Score=262.95 Aligned_cols=319 Identities=12% Similarity=0.112 Sum_probs=249.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.+|..|+++|.+++.+|+. ++++||+.|....||++.++.....+ .+|...|+++.|+.+ +.+|++|..+|.|+||.
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFK 134 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC-ceEEEecCCCccEEEEE
Confidence 4577899999999999976 79999999999999999999977766 799999999999999 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
..++.....+..... .+.-+.|+|.+..|++|+.||.+++|.+.+... ...+.+|..++++-.|.| +
T Consensus 135 ~stg~~~~~~~~e~~---------dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv~~Gh~~~ct~G~f~p-d 201 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVE---------DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKVMSGHNSPCTCGEFIP-D 201 (399)
T ss_pred cccCceEEEeecccC---------ceEEEEecccccEEEeecCCCcEEEEECCCcce---eeEecCCCCCcccccccC-C
Confidence 999988877753222 377899999999999999999999999988632 234566777999999999 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
|..++++..||+|++|++.+..+...+.. .......++.++..+..++.|+.++.+++-+..+|+.+...+........
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecc-cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 99999999999999999987654333321 22445778899999999999999999999999888865433310000000
Q ss_pred cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-C
Q 009022 404 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S 482 (546)
Q Consensus 404 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d 482 (546)
......-++.+.|...... +.| +|+.||+|.|||+.+.++...+ .|. ..|..+ .|-+ ..+|++++ +
T Consensus 281 ~~e~~~esve~~~~ss~lp------L~A---~G~vdG~i~iyD~a~~~~R~~c-~he-~~V~~l-~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLP------LAA---CGSVDGTIAIYDLAASTLRHIC-EHE-DGVTKL-KWLN-TDYLLTACAN 347 (399)
T ss_pred cchhhhhhhhhcccccccc------hhh---cccccceEEEEecccchhheec-cCC-CceEEE-EEcC-cchheeeccC
Confidence 1111111334444322211 222 8999999999999887766554 333 557777 7888 67888888 9
Q ss_pred CcEEEEcCCCCCccceeeccceEEEeeccc
Q 009022 483 RSIFIWRPKEKSELVEQKEEMKIIVCGKAD 512 (546)
Q Consensus 483 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 512 (546)
|.|++||.++|+++.++.+|+..|++-...
T Consensus 348 g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 348 GKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred ceEEeeeccccceEEEEecCchheeEEEEc
Confidence 999999999999999999999877664433
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-36 Score=269.78 Aligned_cols=314 Identities=19% Similarity=0.318 Sum_probs=254.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeE--Ee---------cccCCCceEEEEEecCCCCEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKI--VY---------GNIHSCIVNNIRFNPTNDGTV 230 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~--~~---------~~~~~~~v~~~~~~~~~~~~l 230 (546)
+.+. |..+|.+.+|+|-...+|++|+.|-+.++|++.... ... .+ .......|++++|+.+ |.+|
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~L 250 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLL 250 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeE
Confidence 3445 999999999999874589999999999999987411 100 00 0123457999999999 9999
Q ss_pred EEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 231 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
++|+.||.+++|+.. |..+..+..|.. +|.++.|+..|.+|++++.|+++.+||..++.... .+..+
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl~~Hkg---------PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q---~f~~~ 317 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTLGQHKG---------PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ---QFEFH 317 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhhhccCC---------ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE---eeeec
Confidence 999999999999976 556666655544 59999999999999999999999999998876543 22333
Q ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 311 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
..+-..+.|- +..-|++.+.|+.|+|+.+....+... ..+|.+.|.+|.|.|.+.+|+++|.|++++||.......
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t--~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKT--FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEecCCCccee--eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 3355678887 567799999999999999975444333 347999999999999999999999999999999865543
Q ss_pred CCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceee
Q 009022 391 DSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK 469 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~ 469 (546)
.+.+..|. .++.+.|+|.++.....-.+..++ +.+.|++|++||+..|.++.+|..|. ..|++| +
T Consensus 394 ---------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~---sas~dstV~lwdv~~gv~i~~f~kH~-~pVysv-a 459 (524)
T KOG0273|consen 394 ---------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA---SASFDSTVKLWDVESGVPIHTLMKHQ-EPVYSV-A 459 (524)
T ss_pred ---------hhhhhhhccceeeEeecCCCCccCCCcCCceEE---EeecCCeEEEEEccCCceeEeeccCC-CceEEE-E
Confidence 22333333 346889999988877777788887 88999999999999999999998887 889999 9
Q ss_pred ecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceE-EEeec
Q 009022 470 LHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI-IVCGK 510 (546)
Q Consensus 470 ~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~ 510 (546)
|+|+|+|||+|+ ||.|.||+.++++..+...+...+ -+|..
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn 502 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWN 502 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEc
Confidence 999999999999 999999999999999999888773 44433
No 13
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=259.50 Aligned_cols=327 Identities=15% Similarity=0.130 Sum_probs=251.4
Q ss_pred CCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcE
Q 009022 107 PGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHI 185 (546)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 185 (546)
..|+. +++....+....+++++.+...-+|..... .....+.+|++.|+|+.|+.+| .|
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~~~Fshdg-tl 120 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTCCSFSHDG-TL 120 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEEEEEccCc-eE
Confidence 45773 333333343455566677777666653221 1235788999999999999999 79
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
||||+.+|.|+||...++.....+. ..-..|.-+.|+|. +..|++|+.||.+.+|.+.++...+.+..+..
T Consensus 121 LATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~------- 191 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNS------- 191 (399)
T ss_pred EEecCCCccEEEEEcccCceEEEee-cccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCC-------
Confidence 9999999999999999988887773 45677889999998 99999999999999999999877777766544
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 345 (546)
++++=.|.|+|+.++++..||+|++|++.++++........ .....++.++. .+..++.|+.++.+++-+..+++
T Consensus 192 --~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 192 --PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred --CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCcccccc-ccceeEeccCCccEEEEccccce
Confidence 48888999999999999999999999999997765443222 33567778777 78888999999888888776544
Q ss_pred CCceee------ecCCCCcEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecC
Q 009022 346 AGSSLC------DLPHKRVVNSAYFSP---SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 416 (546)
Q Consensus 346 ~~~~~~------~~~~~~~v~~~~~~p---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 416 (546)
...+.. ...+...+.|+.+.| .-.++|+|+.||+|.|||+...++. +........+++.|-+
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---------~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---------HICEHEDGVTKLKWLN 337 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---------eeccCCCceEEEEEcC
Confidence 322222 113444555555555 5678899999999999999876652 2223333356777776
Q ss_pred CCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 417 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 417 ~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
. .++. +++.+|.|++||.++|+++.++.+|. ..|... +++|+.++++|+| |++.+||++.
T Consensus 338 t----------~~l~---t~c~~g~v~~wDaRtG~l~~~y~GH~-~~Il~f-~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 T----------DYLL---TACANGKVRQWDARTGQLKFTYTGHQ-MGILDF-ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred c----------chhe---eeccCceEEeeeccccceEEEEecCc-hheeEE-EEcCCCcEEEEecCCCeEEEEecC
Confidence 3 3344 78999999999999999999999998 778777 8999999999999 9999999875
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.2e-36 Score=256.07 Aligned_cols=299 Identities=19% Similarity=0.309 Sum_probs=242.1
Q ss_pred CCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE
Q 009022 151 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 230 (546)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (546)
.+|.|-.|-+ ..+.+.+|.+.|.|+++.|.+ .+|++|+.|++|+|||+.+++....+ .+|-..|..+++++. ..||
T Consensus 133 ~rPeWHapwK-l~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r-HpYl 208 (460)
T KOG0285|consen 133 PRPEWHAPWK-LYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR-HPYL 208 (460)
T ss_pred CCccccCcce-ehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc-CceE
Confidence 4444544443 447899999999999999987 79999999999999999999988888 799999999999999 8899
Q ss_pred EEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 231 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
++++.|+.|+.||+...+.++.+..|.. .|+|++..|.-..|++|+.|..+++||+++...+. .+.+|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS---------~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH 276 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLS---------GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGH 276 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccc---------eeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCC
Confidence 9999999999999999999988755544 59999999999999999999999999999976543 55677
Q ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 311 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
..+|..+.+.| ....+++|+.|++|++||++.++... ....|...|.+++.+|....||+++.|. |+-|++..|.+
T Consensus 277 ~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f 352 (460)
T KOG0285|consen 277 TNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF 352 (460)
T ss_pred CCcceeEEeec-CCCceEEecCCceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch
Confidence 78999999999 55678999999999999998766532 2347999999999999999999999885 99999988876
Q ss_pred CCCCcceeeccCCcccCCc-eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc---CC----CCC
Q 009022 391 DSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DP----NIT 462 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~---~~----~~~ 462 (546)
+.. +.++... .++.-+.+ |-++ +|+.+|.|.+||.++|...+.+. .+ ...
T Consensus 353 ~~n---------lsgh~~iintl~~nsD---------~v~~----~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 353 LQN---------LSGHNAIINTLSVNSD---------GVLV----SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred hhc---------cccccceeeeeeeccC---------ceEE----EcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 432 2222221 12222222 4444 69999999999999987655542 11 223
Q ss_pred cccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 463 TISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 463 ~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
.|.+. +|...|..|++|. |.+|++|.-..
T Consensus 411 gI~as-~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 411 GIFAS-CFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceeEE-eecccCceEEeccCCcceEEEeccc
Confidence 45555 7999999999999 99999998654
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.2e-37 Score=266.63 Aligned_cols=293 Identities=17% Similarity=0.313 Sum_probs=236.3
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
+.+-.....-...|..|.|.|+| +.|++|+..|.+.+|+..+......+ +.|..+|+++.|+++ +.++++|..+|.|
T Consensus 86 Kf~h~s~NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtil-QaHDs~Vr~m~ws~~-g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 86 KFVHTSSNKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETIL-QAHDSPVRTMKWSHN-GTWMISGDKGGMI 162 (464)
T ss_pred ceEeccccccccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHh-hhhcccceeEEEccC-CCEEEEcCCCceE
Confidence 33333334455689999999999 67999999999999998654433333 789999999999999 9999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
++|+..-.. +..+..+.. ..|++++|+|+...|++++.||.|+|||....+... .+.+|+-.|.++.|
T Consensus 163 KyWqpnmnn-Vk~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 163 KYWQPNMNN-VKIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---VLRGHGWDVKSVDW 230 (464)
T ss_pred Eecccchhh-hHHhhHhhh--------hhhheeccCCCCceeEEecCCCeEEEEeccCCchhh---eeccCCCCcceecc
Confidence 999986443 333333221 159999999999999999999999999998876544 33677778999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
+| ...+|++|+.|..|++||.+++.+...+ .+|...|..+.|+|++++|+++|.|..++++|+++.+-+..
T Consensus 231 HP-~kgLiasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~------ 301 (464)
T KOG0284|consen 231 HP-TKGLIASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT------ 301 (464)
T ss_pred CC-ccceeEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH------
Confidence 99 8889999999999999999876653222 37999999999999999999999999999999985443221
Q ss_pred ccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEE
Q 009022 400 SHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 400 ~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 478 (546)
+.++ ....++.|+|-.. .++. +|+.||.|..|.+...+++..+...|...|.++ +|+|-|.+|+
T Consensus 302 ---~r~Hkkdv~~~~WhP~~~--------~lft---sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl-~~hPlGhil~ 366 (464)
T KOG0284|consen 302 ---YRGHKKDVTSLTWHPLNE--------SLFT---SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL-AYHPLGHILA 366 (464)
T ss_pred ---hhcchhhheeeccccccc--------ccee---eccCCCceEEEeccccccccCCCcccccceeee-eccccceeEe
Confidence 1212 2234788999742 3333 789999999999997788888877788999999 9999999999
Q ss_pred Eec-CCcEEEEcCC
Q 009022 479 SGS-SRSIFIWRPK 491 (546)
Q Consensus 479 sgs-dg~i~vwd~~ 491 (546)
+|+ |.++++|.-.
T Consensus 367 tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRN 380 (464)
T ss_pred ecCCCcceeeeccC
Confidence 999 9999999743
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=271.27 Aligned_cols=295 Identities=21% Similarity=0.336 Sum_probs=242.0
Q ss_pred ceeeeeccccCCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCC-CceeEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
...++++.||+..|+++.|.| .+ .||++|+.|+.|+||++.. +.++.++ .+|..+|..++|+++ +..|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~-g~~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC-GTSFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc-CCeeeeeecce
Confidence 445688999999999999999 66 8999999999999999987 5555555 799999999999999 99999999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
.|++||+++|+++..+.... .++|+.|.|++ +.+++|+.|+.|+.||+++++.+... ..|-+.|..
T Consensus 281 ~lKlwDtETG~~~~~f~~~~----------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---d~hLg~i~~ 347 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDK----------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---DRHLGAILD 347 (503)
T ss_pred eeeeeccccceEEEEEecCC----------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---Hhhhhheee
Confidence 99999999999998887653 48899999988 89999999999999999998866533 445568999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcc
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
+.|.+ ++..+++.+.|++++||+.+..-..+.+.. .+.-...+|..+|++.+++.-+.|+.|.+|.+...-... ...
T Consensus 348 i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n-kkK 424 (503)
T KOG0282|consen 348 ITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN-KKK 424 (503)
T ss_pred eEEcc-CCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEEEecccccccC-Hhh
Confidence 99999 999999999999999999986554433322 233346789999999999999999999999875322111 111
Q ss_pred eeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC-c
Q 009022 397 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-D 475 (546)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~ 475 (546)
....+... ...+.+.|+|+ |.+++ +|..+|.+.+||.++-+++..+..|. ..+..+ .|+|.. .
T Consensus 425 ~feGh~va--Gys~~v~fSpD---------G~~l~---SGdsdG~v~~wdwkt~kl~~~lkah~-~~ci~v-~wHP~e~S 488 (503)
T KOG0282|consen 425 RFEGHSVA--GYSCQVDFSPD---------GRTLC---SGDSDGKVNFWDWKTTKLVSKLKAHD-QPCIGV-DWHPVEPS 488 (503)
T ss_pred hhcceecc--CceeeEEEcCC---------CCeEE---eecCCccEEEeechhhhhhhccccCC-cceEEE-EecCCCcc
Confidence 11111111 12357899999 89998 99999999999999999999999885 555555 899964 5
Q ss_pred EEEEec-CCcEEEEc
Q 009022 476 VLASGS-SRSIFIWR 489 (546)
Q Consensus 476 ~l~sgs-dg~i~vwd 489 (546)
.|||++ ||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 788899 99999996
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-35 Score=260.73 Aligned_cols=335 Identities=17% Similarity=0.264 Sum_probs=257.1
Q ss_pred CCccc-cccccccccC-CccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcE
Q 009022 108 GHTTM-SCPHRVATEY-GVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHI 185 (546)
Q Consensus 108 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 185 (546)
.|++. .++...+... .+.+++.+.+.++|.+............++.+.. .+.+. ..-...|++|+|+.+| .+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~----~~~~s-~~~nkdVT~L~Wn~~G-~~ 249 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIR----EGGKS-VPSNKDVTSLDWNNDG-TL 249 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhh----hhccc-CCccCCcceEEecCCC-Ce
Confidence 37744 4444444444 6677788888888877652221111111111100 00000 0124589999999999 79
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
||+|+.||.++||+.... ....+ ..|.++|.+++|+.. +++|++++.|+++.+||..++...+.+.++..+
T Consensus 250 LatG~~~G~~riw~~~G~-l~~tl-~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~------ 320 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGN-LISTL-GQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP------ 320 (524)
T ss_pred EEEeecCcEEEEEecCch-hhhhh-hccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeeccCC------
Confidence 999999999999998654 33444 679999999999999 999999999999999999999999988887642
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 345 (546)
...+.|-. ...+++++.|+.|+++-+....+..++ .+|.+.|.++.|+| .+.+|++++.|++++||.+....
T Consensus 321 ---~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 321 ---ALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred ---ccceEEec-CceEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc
Confidence 24456654 456888999999999999877665533 34677999999999 99999999999999999986544
Q ss_pred CCceeeecCCCCcEEEEEEeCCC---------CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCc-eeEEec
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSG---------SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWD 415 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 415 (546)
....+ ..|...|..+.|+|.| ..+++++.|++|++||+..+.+ .+.+.+|..+ +.++|+
T Consensus 393 ~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~---------i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 393 SVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP---------IHTLMKHQEPVYSVAFS 461 (524)
T ss_pred chhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce---------eEeeccCCCceEEEEec
Confidence 43333 2699999999999854 4799999999999999998876 3335444444 689999
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
|+ |+|++ +|+.|+.|.||+++++++++.+.+. +.|..| +|+.+|.+|..+- |+.+++-|++
T Consensus 462 ~~---------g~ylA---sGs~dg~V~iws~~~~~l~~s~~~~--~~Ifel-~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 462 PN---------GRYLA---SGSLDGCVHIWSTKTGKLVKSYQGT--GGIFEL-CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CC---------CcEEE---ecCCCCeeEeccccchheeEeecCC--CeEEEE-EEcCCCCEEEEEecCCCceEEEec
Confidence 99 99999 9999999999999999999998766 457777 8999999988876 9999998875
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=240.51 Aligned_cols=288 Identities=18% Similarity=0.243 Sum_probs=232.2
Q ss_pred CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 009022 122 YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY 201 (546)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~ 201 (546)
..+++++++.++++|+.. +..|.++++...+.|+.|...|++ ++||+++. ..||+||+.
T Consensus 11 viLvsA~YDhTIRfWqa~-------------------tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~ 69 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-------------------TGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLN 69 (311)
T ss_pred eEEEeccCcceeeeeehh-------------------cCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEcc
Confidence 457888999999999633 356677888788899999999999 68888875 589999999
Q ss_pred CCce--eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC
Q 009022 202 KVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 279 (546)
Q Consensus 202 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 279 (546)
+... +..+ .+|...|+++.|..+ ++.+++|+.||+++|||++...+.+.+... .+|+++..+|+..
T Consensus 70 S~np~Pv~t~-e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvlhpnQt 137 (311)
T KOG0315|consen 70 SNNPNPVATF-EGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVLHPNQT 137 (311)
T ss_pred CCCCCceeEE-eccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhccCC----------CCcceEEecCCcc
Confidence 8654 3444 789999999999999 999999999999999999986666655443 2599999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee----cCC
Q 009022 280 VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LPH 355 (546)
Q Consensus 280 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~ 355 (546)
.|++|..+|.|++||+........++. ....+|.++...| ++.+++.+...|..++|++-.......+.. ..|
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 999999999999999998755544332 3335899999999 999999999999999999976443333322 269
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecC
Q 009022 356 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENY 434 (546)
Q Consensus 356 ~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~ 434 (546)
.+.+..+.+||++++|+++|.|.+++||++.+. +.. .....++. =.+.++|+.+ |.|++
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kl-------e~~l~gh~rWvWdc~FS~d---------g~Ylv--- 274 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKL-------ELVLTGHQRWVWDCAFSAD---------GEYLV--- 274 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eee-------EEEeecCCceEEeeeeccC---------ccEEE---
Confidence 999999999999999999999999999999765 110 11111111 1245666666 99999
Q ss_pred CCCcCcceEEEECCchhhhHhhcCCCCCccc
Q 009022 435 NGAALHPIDFIDITTGQLVAEVMDPNITTIS 465 (546)
Q Consensus 435 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 465 (546)
+|+.|+.+++|++..++.++...+|+...++
T Consensus 275 Tassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred ecCCCCceeecccccCceeeecCCcccccEE
Confidence 9999999999999999999999999865544
No 19
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=8e-35 Score=257.69 Aligned_cols=320 Identities=38% Similarity=0.653 Sum_probs=264.2
Q ss_pred CCCCccCCCceeeeeccccCCCeEEEEEcCCCC-cEEEEEcCCCcEEEEeCCCC---ceeEEecccCCCceEEEEEecCC
Q 009022 151 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTN 226 (546)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~ 226 (546)
+.....++.......++.|.+.|++++|+|..+ +++|+|+.-|+|-+||+.+. .....+...|..+|.+|.|+|.+
T Consensus 167 ~~~dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 167 IKFDLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred cccccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC
Confidence 555667777777788899999999999999876 78999999999999999532 22333447899999999999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 306 (546)
...+++.+.||+|++-|+........+... ..+..+.++.|+.+...++.++.-|...+||+++.......+.
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLD-------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcC-------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 899999999999999999987655444332 1122478889999999999999889999999999876555555
Q ss_pred eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc--eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 009022 307 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 384 (546)
Q Consensus 307 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd 384 (546)
.+.. .|+.|+++|....+|++++.|++++|||+|...... .+..+.|...|.+..|||.+-.|++.+.|..|+|||
T Consensus 320 lh~k--KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 320 LHKK--KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhc--ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 5555 899999999989999999999999999999876555 367779999999999999777799999999999999
Q ss_pred CC-CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCc
Q 009022 385 SI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 463 (546)
Q Consensus 385 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~ 463 (546)
.. -+....+...+.+.+...++.+++...|.|+ ..+.+. |..-..|-|||...++.+..+..+....
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~---~~li~v---------g~~~r~IDv~~~~~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPD---YNLIVV---------GRYPRPIDVFDGNGGQMVCELHDPESST 465 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCC---ccEEEE---------eccCcceeEEcCCCCEEeeeccCccccc
Confidence 84 3444567778888999999999999999996 333333 4444569999999999999998888789
Q ss_pred ccceeeecCCCcEEEEec--CCcEEEEcCC
Q 009022 464 ISPVNKLHPRDDVLASGS--SRSIFIWRPK 491 (546)
Q Consensus 464 i~~v~~~s~~~~~l~sgs--dg~i~vwd~~ 491 (546)
|.+++.|+|-+..+++|+ .|.|+||--.
T Consensus 466 I~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 466 IPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeecccccceeccCCccceEEEEecC
Confidence 999999999999777776 6888888654
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=270.65 Aligned_cols=301 Identities=19% Similarity=0.301 Sum_probs=241.7
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
-..+||...|+|++++||| +++|||+.||.|+|||...+-+..++ ..|+..|+.+.|+.. ++.+++++.||+|+.||
T Consensus 344 lKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~-g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEec-CCEEEEeecCCeEEeee
Confidence 3457899999999999999 79999999999999999999999998 689999999999999 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
+......+++..+... ...|++..|.|..+++|+.|. .|.+|++.+++.+- .+.+|.++|.+++|+|
T Consensus 421 lkRYrNfRTft~P~p~--------QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~- 488 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPI--------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSP- 488 (893)
T ss_pred ecccceeeeecCCCce--------eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEcc-
Confidence 9999998888766542 578999999999999998876 89999999988654 4567778999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc-------
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR------- 395 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------- 395 (546)
.+..|++++.|.+|++||+-.. ......+.+...+..++|+|+|+.|++++.||.|.+||+..+.......
T Consensus 489 ~~~~LaS~SWDkTVRiW~if~s--~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~ 566 (893)
T KOG0291|consen 489 DGSLLASGSWDKTVRIWDIFSS--SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG 566 (893)
T ss_pred ccCeEEeccccceEEEEEeecc--CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc
Confidence 9999999999999999998642 2356666788889999999999999999999999999998765432111
Q ss_pred -----ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC----------
Q 009022 396 -----EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN---------- 460 (546)
Q Consensus 396 -----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~---------- 460 (546)
..+............+++|+++ |.++. +|+..+.|+||++.++-+++.++-.+
T Consensus 567 gR~~~D~~ta~~sa~~K~Ftti~ySaD---------G~~Il---AgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~ef 634 (893)
T KOG0291|consen 567 GRKETDRITAENSAKGKTFTTICYSAD---------GKCIL---AGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEF 634 (893)
T ss_pred cccccceeehhhcccCCceEEEEEcCC---------CCEEE---ecCCcccEEEEECchhheeeeEEeccccchhHHHHH
Confidence 1111111111122246778887 77777 78999999999998876555433100
Q ss_pred ---------------------------------------------CCcccceeeecCCCcEEEEecCCcEEEEcCCCCC
Q 009022 461 ---------------------------------------------ITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 461 ---------------------------------------------~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
.-.+..+ .|+|.|+-+|.++--.|.||.+.+.-
T Consensus 635 ln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv-~fsPtgraFAaatTEGl~IYsld~~~ 712 (893)
T KOG0291|consen 635 LNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSV-QFSPTGRAFAAATTEGLLIYSLDTTI 712 (893)
T ss_pred hccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEE-EECCCcCeeeeecccceEEEecCCce
Confidence 1123344 78999999999886667788876543
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=271.53 Aligned_cols=313 Identities=18% Similarity=0.248 Sum_probs=254.6
Q ss_pred CccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEE
Q 009022 154 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 232 (546)
Q Consensus 154 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 232 (546)
.+.+|...+++.+.--..+|..++|+..|+ +||.|+. -|.+-||++++...+... ++|...+++++++|+ +.++++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD-gq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD-GQLIAT 367 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC-CcEEEe
Confidence 456788888899988889999999999994 7877765 489999999998887777 799999999999999 999999
Q ss_pred EeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC
Q 009022 233 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 312 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 312 (546)
|+.||.|+|||..++-+..++.-|.. .|+.+.|+..++.+++++-||+|+.||+.......+... ....
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts---------~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--P~p~ 436 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTS---------GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--PEPI 436 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCC---------ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--CCce
Confidence 99999999999999999999987765 499999999999999999999999999987655443222 1222
Q ss_pred cEEEEEECCCCCCEEEEEeCCC-eEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 313 KVVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
...|++..| .|.++.+|+.|. .|++|++.+++. +-.+ +|.++|.+++|+|.+..|+++|.|.+|++||+-....
T Consensus 437 QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 437 QFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred eeeEEEEcC-CCCEEEeeccceEEEEEEEeecCee---eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 577899999 889888888876 599999976554 4444 8999999999999999999999999999999865421
Q ss_pred CCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC-----------
Q 009022 391 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP----------- 459 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~----------- 459 (546)
.. ..+......+.+.|.|+ |+-++ ....||.|.+||+..+..+..+.+.
T Consensus 513 ~v--------Etl~i~sdvl~vsfrPd---------G~ela---VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 513 TV--------ETLEIRSDVLAVSFRPD---------GKELA---VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred ee--------eeEeeccceeEEEEcCC---------CCeEE---EEEecceEEEEEhhhceeeccccchhhccccccccc
Confidence 10 11122223457889998 77777 6788999999999876555433321
Q ss_pred --------CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceE
Q 009022 460 --------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 505 (546)
Q Consensus 460 --------~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~ 505 (546)
....+.++ ++|+||.+|++|+ ...|+||++.++-.++++.-....
T Consensus 573 ~~ta~~sa~~K~Ftti-~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTI-CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred eeehhhcccCCceEEE-EEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 12456666 8999999999999 999999999999999988765543
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-35 Score=277.99 Aligned_cols=254 Identities=22% Similarity=0.290 Sum_probs=215.1
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc------------------------------eeEEe
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------------------------------EKIVY 209 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------------------------~~~~~ 209 (546)
..|..++..-...|+|..|++++ .+||.|..|..|++|.+...+ .....
T Consensus 368 Sic~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 45666777677799999999999 699999999999999986311 01112
Q ss_pred cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc
Q 009022 210 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 289 (546)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 289 (546)
..+|.++|..+.|+|+ .++|++++.|+++++|.+.+..++..++.|.. +|+.+.|+|.|-++|+++.|++
T Consensus 447 L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~---------PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA---------PVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCc---------ceeeEEecCCceEEEecCCCce
Confidence 3689999999999999 99999999999999999999999988876654 5999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
.++|......+.+ .+.+|-..|.|+.|+| +.+++++||.|.+|++||+.++...+.+ .+|.++|.+++|+|+|+
T Consensus 517 ArLWs~d~~~PlR---ifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 517 ARLWSTDHNKPLR---IFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeecccCCchh---hhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCCCc
Confidence 9999988765543 3345556899999999 9999999999999999999876553333 38999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+|++|+.||.|.+||+.+
T Consensus 591 ~LaSg~ed~~I~iWDl~~-------------------------------------------------------------- 608 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLAN-------------------------------------------------------------- 608 (707)
T ss_pred eEeecccCCcEEEEEcCC--------------------------------------------------------------
Confidence 999999999888888754
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
|+++..+.+| .+.+.++ .|+.+|..||+|+ |.+|++||+..-.
T Consensus 609 ~~~v~~l~~H-t~ti~Sl-sFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 609 GSLVKQLKGH-TGTIYSL-SFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred Ccchhhhhcc-cCceeEE-EEecCCCEEEecCCCCeEEEEEchhhc
Confidence 3445567777 5888888 9999999999999 9999999986543
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-33 Score=253.73 Aligned_cols=308 Identities=13% Similarity=0.228 Sum_probs=241.2
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec--ccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
....++..|..-|.|+.|+|+| .++||++.||+|.|||-.+++.+..+. .+|.+.|.+|+|+|+ +..|++++.|.+
T Consensus 181 KFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt 258 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKT 258 (603)
T ss_pred eeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCce
Confidence 3446788899999999999999 689999999999999999998887773 489999999999999 999999999999
Q ss_pred EEEEECCCCceeeeeecCCCC----------------------------------CCCCCcccceEEEEecCCCCEEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNG----------------------------------WHGPRTWRMLYGMDINPEKGVVLVA 284 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~ 284 (546)
++|||+.+.+++.++...... ..-..+...|+++..++++.+|++|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999999998887766543320 0012234579999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCcc-------------------e-----------------------------------------
Q 009022 285 DNFGFLYLVDARTNSRSGE-------------------A----------------------------------------- 304 (546)
Q Consensus 285 ~~dg~i~i~d~~~~~~~~~-------------------~----------------------------------------- 304 (546)
+.||.|.-|++.++..-.. +
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 9999999999876421100 0
Q ss_pred ----------EEee--------cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC
Q 009022 305 ----------ILIH--------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 366 (546)
Q Consensus 305 ----------~~~~--------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p 366 (546)
..+. .-.....+++++| ++..+++|+.|+.|+||.+.............|.++|++++++|
T Consensus 419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred EEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence 0000 0012345778888 99999999999999999998655444445558999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
++.+||+|...+.+.+||+.+.+. ...+-.. +.....+++|+|+ ..++| +|+-|.+|.||+
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~-~~~~w~F------HtakI~~~aWsP~---------n~~vA---TGSlDt~Viiys 558 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREV-KTNRWAF------HTAKINCVAWSPN---------NKLVA---TGSLDTNVIIYS 558 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCce-ecceeee------eeeeEEEEEeCCC---------ceEEE---eccccceEEEEE
Confidence 999999999999999999988765 2211111 2334468999999 77888 999999999999
Q ss_pred CCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCC
Q 009022 447 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~ 491 (546)
+........+.+.|...+..+ .|-.+..++.+|.|..|++|++.
T Consensus 559 v~kP~~~i~iknAH~~gVn~v-~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 559 VKKPAKHIIIKNAHLGGVNSV-AWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccChhhheEeccccccCceeE-EEecCceEEeccCcceeEEeccc
Confidence 987766666667676778888 78765544444449999999874
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=270.67 Aligned_cols=353 Identities=13% Similarity=0.173 Sum_probs=268.1
Q ss_pred eeccCCCcccccccccccc---CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEc
Q 009022 103 LCKMPGHTTMSCPHRVATE---YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFH 179 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 179 (546)
+-.+.||..+++...+.+. ..+.++..+....+|++...+. |.+++..|.+.|++|+|+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------------cl~~~~~H~S~vtsL~~~ 201 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------------------CLHTMILHKSAVTSLAFS 201 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------------------HHHHHHhhhhheeeeeec
Confidence 3445667655555444443 3457777888888887554333 457788999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCcee-----------------------------------------------------
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEK----------------------------------------------------- 206 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------------------- 206 (546)
+++ .-+++++.|..+.|||+.+.+..
T Consensus 202 ~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~ 280 (775)
T KOG0319|consen 202 EDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD 280 (775)
T ss_pred cCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence 998 67899999999999998221100
Q ss_pred -------------------------EEe----------cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 207 -------------------------IVY----------GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 207 -------------------------~~~----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
..+ ..+....|..++|-....++|+.++..+.+++|++.+..+.
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~- 359 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ- 359 (775)
T ss_pred chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-
Confidence 000 01245567788775433789999999999999999888776
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc-ceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.+..|.. .|.++....+|-+|++|+.|..+++|.+....... ......+|...|.+++++.....+|+++
T Consensus 360 ii~GH~e---------~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 360 IIPGHTE---------AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred EEeCchh---------heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence 5555544 48888866778899999999999999884433221 1223456667899999987667899999
Q ss_pred eCCCeEEEEECCCCCCCc--eee-----ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 331 GNDHFARIWDIRRLEAGS--SLC-----DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~--~~~-----~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
|.|++|++|++...+... ... ...|...|+|++++|+.++|||||.|.+.+||++....+ .+.+
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l---------~~vL 501 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL---------LGVL 501 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE---------EEEe
Confidence 999999999997622211 111 126999999999999999999999999999999984443 2233
Q ss_pred cccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-
Q 009022 404 NRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 481 (546)
Q Consensus 404 ~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs- 481 (546)
.+|. ..+++.|+|. .+.++ +++.|.+|+||.+.+..++.+|.||. ..|..+ .|-.+|..|++++
T Consensus 502 sGH~RGvw~V~Fs~~---------dq~la---T~SgD~TvKIW~is~fSClkT~eGH~-~aVlra-~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKN---------DQLLA---TCSGDKTVKIWSISTFSCLKTFEGHT-SAVLRA-SFIRNGKQLISAGA 567 (775)
T ss_pred eCCccceEEEEeccc---------cceeE---eccCCceEEEEEeccceeeeeecCcc-ceeEee-eeeeCCcEEEeccC
Confidence 3333 3468899997 56666 89999999999999999999999988 666666 7999999999988
Q ss_pred CCcEEEEcCCCCCccceeeccceEEE
Q 009022 482 SRSIFIWRPKEKSELVEQKEEMKIIV 507 (546)
Q Consensus 482 dg~i~vwd~~~~~~~~~~~~~~~~i~ 507 (546)
||.|+||++.++.++.++.+|...+.
T Consensus 568 dGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred CCcEEEEeccchhhhhhhhhccceeE
Confidence 99999999999999999999987543
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-34 Score=249.70 Aligned_cols=295 Identities=18% Similarity=0.250 Sum_probs=245.9
Q ss_pred cCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 156 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 156 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
.+|-....+.+.+|..+|+.+-|+|+- .++++++.|++|++||..+++....+ ++|...|..|+|+.. +.+|++++.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~-Gk~l~tcSs 170 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS-GKYLATCSS 170 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC-ccEEEecCC
Confidence 344445567788999999999999998 68999999999999999999986666 899999999999999 999999999
Q ss_pred CCeEEEEECCC-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 236 DGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 236 dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
|-.+++||..+ .+++.....+.. .|.++.|-|.|.+|++++.|..|+.|++.++.... .+.+|...|
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h---------~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~---t~~~h~ewv 238 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEH---------GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK---TFPGHSEWV 238 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCccc---------ceeeEEEEecCCeeeecccccceeEEecccceeEE---eccCchHhE
Confidence 99999999986 344444433332 49999999999999999999999999999986544 456666799
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC---------------CCEEEEEeCCCc
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS---------------GSKILTTSQDNR 379 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~s~s~dg~ 379 (546)
..+..+. ++.++++++.|.+|++|-+.+......+. .|..+|.+++|.|. +.++++++.|++
T Consensus 239 r~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 239 RMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred EEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 9999998 99999999999999999998765544443 58888999999762 258999999999
Q ss_pred EEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 380 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
|++||+.++.++- ........+ -.++|+|. |+|++ +...|+++++||+++++++.++..|
T Consensus 316 Ik~wdv~tg~cL~------tL~ghdnwV--r~~af~p~---------Gkyi~---ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 316 IKIWDVSTGMCLF------TLVGHDNWV--RGVAFSPG---------GKYIL---SCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EEEEeccCCeEEE------EEeccccee--eeeEEcCC---------CeEEE---EEecCCcEEEEEeccceeeeccCCC
Confidence 9999999987632 222222222 25788998 99999 8999999999999999999999855
Q ss_pred CCCcccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 460 NITTISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
. .-+.++ .|+.+..+++||+ |.++++|.-
T Consensus 376 ~-hfvt~l-Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 376 E-HFVTSL-DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred c-ceeEEE-ecCCCCceEEeccccceeeeeec
Confidence 4 555555 9999999999999 999999964
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=269.71 Aligned_cols=327 Identities=18% Similarity=0.231 Sum_probs=247.8
Q ss_pred CCccCCCceeeeeccc-cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC-CCEE
Q 009022 153 PAHVIPDQVNCAVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTV 230 (546)
Q Consensus 153 ~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l 230 (546)
..|.+|...+++.++. |.++|.-++|+|.+ .+|++|+.|+.++|||+..+.+...+ ++|.+.|.++.|+|+. ..+|
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL 164 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLL 164 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhhe
Confidence 3466777778888888 99999999999999 79999999999999999999888888 8999999999999983 2357
Q ss_pred EEEeCCCeEEEEECCCCce-eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC---------
Q 009022 231 YAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR--------- 300 (546)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 300 (546)
++|..|+++++||+++... +..+..|.. .|++++|++++..++++++|..+.+||+.+.+.
T Consensus 165 ~sg~~D~~v~vwnl~~~~tcl~~~~~H~S---------~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 165 ASGATDGTVRVWNLNDKRTCLHTMILHKS---------AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred eecCCCceEEEEEcccCchHHHHHHhhhh---------heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence 8999999999999996554 444444433 477788887777777777777777777643200
Q ss_pred --------------------------------------------------------------------------------
Q 009022 301 -------------------------------------------------------------------------------- 300 (546)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (546)
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence
Q ss_pred ---------------------------------------CcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 301 ---------------------------------------SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 301 ---------------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.......++|...|.++.... .+.+|++|+.|.++++|.+
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRL 394 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEe
Confidence 000001234445566666333 5679999999999999988
Q ss_pred CCCCCCc-eeee-cCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCccee-eccCCcccCCceeEEecCC
Q 009022 342 RRLEAGS-SLCD-LPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIV-HSHDFNRHLTPFRAEWDPK 417 (546)
Q Consensus 342 ~~~~~~~-~~~~-~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ 417 (546)
++..... ++.. .+|...|.+++++. ...+|+++|.|++|++|++...+...+..... ......+...+-+++.+|+
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 4433221 1211 27999999999977 45689999999999999998633222211110 0001111112236777887
Q ss_pred CCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 418 DPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 418 ~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
.++++ +|+.|.+.+||++..+..+.++.+|. .++.+| .|+|..+.|+|+| |++|+||.+.+..++
T Consensus 475 ---------dkLiA---T~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V-~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 475 ---------DKLIA---TGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCV-SFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred ---------CceEE---ecccccceeeecccCceEEEEeeCCc-cceEEE-EeccccceeEeccCCceEEEEEeccceee
Confidence 67777 99999999999999999999998887 888899 9999999999999 999999999999999
Q ss_pred ceeeccceE
Q 009022 497 VEQKEEMKI 505 (546)
Q Consensus 497 ~~~~~~~~~ 505 (546)
+++.+|...
T Consensus 541 kT~eGH~~a 549 (775)
T KOG0319|consen 541 KTFEGHTSA 549 (775)
T ss_pred eeecCccce
Confidence 999998863
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=252.26 Aligned_cols=373 Identities=17% Similarity=0.244 Sum_probs=274.8
Q ss_pred CCCCceeeeccCCCccccccccccc-cCCccccCCCCCCCCchhhhh-----cccCCCCCCCCCC-c-------------
Q 009022 96 CPMKPCFLCKMPGHTTMSCPHRVAT-EYGVTPASHRNAGNPVEYVFE-----RQLRPNMTYMKPA-H------------- 155 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~------------- 155 (546)
+..++.....+..|...+.....+| +..++++-..+..++|+.... .+.......++.. |
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 3344444556678886555555555 455566656777888875432 1111111111111 1
Q ss_pred --------cCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCC
Q 009022 156 --------VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTND 227 (546)
Q Consensus 156 --------~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (546)
.......+..+.||...|+++.|-|.-+..++||+.|++|.+|.-...+....+ ..|..-|.++.|+|+ +
T Consensus 125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPD-G 202 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPD-G 202 (603)
T ss_pred ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCC-C
Confidence 112234456788999999999999999888999999999999986655555555 679999999999999 9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcce---
Q 009022 228 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA--- 304 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--- 304 (546)
.+|++++.||.+.+||-.+++.+..+... ..+...|++++|+||+..+++++.|.++++||+.+.....+.
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999999888641 122236999999999999999999999999999875322111
Q ss_pred -------------------------------------EEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 009022 305 -------------------------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 347 (546)
Q Consensus 305 -------------------------------------~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 347 (546)
....+|...|+++..+| ++.+|++|+.||.|.-|+..++...
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCcccc
Confidence 12335666899999999 8899999999999999998643221
Q ss_pred cee--------e-----------------------------------ec-------------------------------
Q 009022 348 SSL--------C-----------------------------------DL------------------------------- 353 (546)
Q Consensus 348 ~~~--------~-----------------------------------~~------------------------------- 353 (546)
+.. . .+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 000 0 00
Q ss_pred -----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee
Q 009022 354 -----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 428 (546)
Q Consensus 354 -----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~ 428 (546)
...-...+++++|+++.+++|+.|+.|+||.+....+...... ......+..++|+|+ |.
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~------~~h~a~iT~vaySpd---------~~ 500 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL------LEHRAAITDVAYSPD---------GA 500 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee------ecccCCceEEEECCC---------Cc
Confidence 0012356789999999999999999999999987665322111 112223347899999 99
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
|++ +|...+.+.+||..+.+.......-|...|.++ +|+|+..+||||+ |-.|.||++......
T Consensus 501 yla---~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~-aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 501 YLA---AGDASRKVVLYDVASREVKTNRWAFHTAKINCV-AWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEE---EeccCCcEEEEEcccCceecceeeeeeeeEEEE-EeCCCceEEEeccccceEEEEEccChhhh
Confidence 999 889999999999999887555555455889998 9999999999999 999999999876543
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-34 Score=231.67 Aligned_cols=287 Identities=16% Similarity=0.221 Sum_probs=237.1
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.++|..|.++|.++.|+-+| +|.++++.|.+|++|+...+.++..+ .+|...|..++.+.+ +..|++|+.|..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D-nskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD-NSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc-ccccccCCCCceEEEE
Confidence 46789999999999999999 79999999999999999999999988 799999999999999 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|+.+|+.++.+..|.. .|+.+.|+.+...+++|+-|..+++||.+...... +..+......|.++..+
T Consensus 87 DV~TGkv~Rr~rgH~a---------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~-- 154 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLA---------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVA-- 154 (307)
T ss_pred EcccCeeeeecccccc---------eeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEec--
Confidence 9999999999988765 49999999999999999999999999999865432 22334445578999885
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
+..|++|+.||+++.||+|.+.. ... ....+|+|++|+++++..+.++.|+++++.|-.+|+++....
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l---~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk------- 222 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTL---SSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK------- 222 (307)
T ss_pred -ccEEEeeccCCcEEEEEeeccee---ehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------
Confidence 48899999999999999986543 211 234579999999999999999999999999999999855322
Q ss_pred CcccCC-ce--eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 403 FNRHLT-PF--RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 403 ~~~~~~-~~--~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
++.. .+ .+++... ...++ +|+.||.|++||+.....+..+..+....+..+ +++|.-..|++
T Consensus 223 --Ghkn~eykldc~l~qs---------dthV~---sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl-~~hp~~~~f~~ 287 (307)
T KOG0316|consen 223 --GHKNMEYKLDCCLNQS---------DTHVF---SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL-SCHPTMDDFIT 287 (307)
T ss_pred --ccccceeeeeeeeccc---------ceeEE---eccCCceEEEEEeccceeeeeeccCCceeEEee-ecccCccceeE
Confidence 1111 11 2222222 23333 899999999999999999988877775557777 99999988999
Q ss_pred ecCCcEEEEcCC
Q 009022 480 GSSRSIFIWRPK 491 (546)
Q Consensus 480 gsdg~i~vwd~~ 491 (546)
+.++.+.+|--.
T Consensus 288 A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 288 ATGHGDLFWYQE 299 (307)
T ss_pred ecCCceeceeeh
Confidence 888888888643
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=252.08 Aligned_cols=293 Identities=19% Similarity=0.218 Sum_probs=232.8
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce---eEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
..++|..|++.|.-+.||++| ++|||++.|.+..||.+..... ..++ .+|..+|..+.|+|+ .++|++|+.+..
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD-dryLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD-DRYLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC-CCeEEecCchHh
Confidence 347899999999999999999 8999999999999999865433 3334 689999999999999 999999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC-CCcEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK-GSKVVGL 317 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~i~~~ 317 (546)
+.+||+.+|.....+.... ...+.+++|.|||..+++|+.|+.+..||+.....- ..... ...|.++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~--------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~----~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGL--------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG----NWEGVRDPKVHDL 360 (519)
T ss_pred eeeccCCcchhhhhcccCc--------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhh----cccccccceeEEE
Confidence 9999999998877664331 125889999999999999999999999999764311 11111 1269999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
+..+ ++.++++.+.|..|++|+..+...... .....+|++++++.+++++++.-.+..|++||+...+++....
T Consensus 361 ait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~l---ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-- 434 (519)
T KOG0293|consen 361 AITY-DGKYVLLVTVDKKIRLYNREARVDRGL---ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-- 434 (519)
T ss_pred EEcC-CCcEEEEEecccceeeechhhhhhhcc---ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh--
Confidence 9999 999999999999999999865433222 2456789999999999999999999999999998665533211
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC-cE
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-DV 476 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~ 476 (546)
........++.+|.-.+ ..+++ +|+.|+.|+||+..+|+++..+.||. ..+.+| +|+|.. .+
T Consensus 435 ----Ghkq~~fiIrSCFgg~~--------~~fia---SGSED~kvyIWhr~sgkll~~LsGHs-~~vNcV-swNP~~p~m 497 (519)
T KOG0293|consen 435 ----GHKQGHFIIRSCFGGGN--------DKFIA---SGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCV-SWNPADPEM 497 (519)
T ss_pred ----cccccceEEEeccCCCC--------cceEE---ecCCCceEEEEEccCCceeEeecCCc-ceeeEE-ecCCCCHHH
Confidence 11111112334443331 35666 89999999999999999999999987 788888 999966 57
Q ss_pred EEEec-CCcEEEEcCCC
Q 009022 477 LASGS-SRSIFIWRPKE 492 (546)
Q Consensus 477 l~sgs-dg~i~vwd~~~ 492 (546)
+|+|| ||+|+||.+..
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 88888 89999998764
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=273.13 Aligned_cols=294 Identities=22% Similarity=0.386 Sum_probs=237.3
Q ss_pred eeecccc-CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 163 CAVIRYH-SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 163 ~~~~~~h-~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
...+.+| ...|.|+.|+++| ++|++++.++.+++|+..... ....+ .+|...|..++|+|+ +.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d-~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD-GSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC-CcEEEEecCCceE
Confidence 3455454 8899999999999 679999999999999997666 44444 689999999999999 9999999999999
Q ss_pred EEEEC-CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 240 SCTDL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 240 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
++||+ ..+..+..+..|.. .|++++|+|+++++++|+.|+.|++||+++++... .+..|...|++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~---------~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHST---------YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGISGLA 295 (456)
T ss_pred EEeeccCCCeEEEEecCCCC---------ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCceEEEE
Confidence 99999 55578888877665 49999999999999999999999999999965543 4566667999999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCC--cEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~--~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
|++ ++++|++++.|+.|+|||+.++... ++..+ ++.. +++++.|+|++.+|++++.|+.+++||+..+.......
T Consensus 296 f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 296 FSP-DGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred ECC-CCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 999 9999999999999999999876622 12222 2322 69999999999999999999999999999877644322
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 475 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 475 (546)
.+... ..+.+++.. ...|.++. +|+.|+.|++|++.++..+..+.+|....+..+ +++|..+
T Consensus 374 ----~~~~~-----~~~~~~~~~-----~~~~~~i~---sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~-~~~~~~~ 435 (456)
T KOG0266|consen 374 ----GHSNL-----VRCIFSPTL-----STGGKLIY---SGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL-SSHPTEN 435 (456)
T ss_pred ----ccCCc-----ceeEecccc-----cCCCCeEE---EEeCCceEEEEeCCccchhhhhcCCCCCceecc-ccCCCcC
Confidence 11111 112222221 22267776 899999999999999999999999854666666 8999999
Q ss_pred EEEEec---CCcEEEEcCC
Q 009022 476 VLASGS---SRSIFIWRPK 491 (546)
Q Consensus 476 ~l~sgs---dg~i~vwd~~ 491 (546)
++++++ |+.|++|...
T Consensus 436 ~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeeecCcCCCceEEEecCC
Confidence 999976 7999999864
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.9e-33 Score=257.61 Aligned_cols=286 Identities=23% Similarity=0.389 Sum_probs=233.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+++.+|.++|++++|+|++ ++|++++.+|.|++|++.+......+ ..|...+..+.|+|+ +.+|++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD-GTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC-CCEEEEEcCCCeEEEEE
Confidence 4678999999999999998 68999999999999999987765555 678899999999999 78999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
+.+++....+..+.. .+.++.|++++.++++++.++.|.+|++.+.+... ....+...+.++.|+| +
T Consensus 80 ~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-~ 146 (289)
T cd00200 80 LETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---TLRGHTDWVNSVAFSP-D 146 (289)
T ss_pred cCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---EeccCCCcEEEEEEcC-c
Confidence 998776666654432 48999999998888888889999999998654432 2335556899999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
+.++++++.++.|++||+++.+....+. .|...|.++.|+|+++.|++++.++.|++||+..++......
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-------- 216 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------- 216 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--------
Confidence 8888888889999999998655433332 577799999999999999999999999999998765433211
Q ss_pred cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-C
Q 009022 404 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S 482 (546)
Q Consensus 404 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d 482 (546)
........+.|+|+ +.+++ +++.++.|++|++.+++.+..+..+. ..+.++ +|+|++.+|++++ |
T Consensus 217 ~~~~~i~~~~~~~~---------~~~~~---~~~~~~~i~i~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~l~~~~~d 282 (289)
T cd00200 217 GHENGVNSVAFSPD---------GYLLA---SGSEDGTIRVWDLRTGECVQTLSGHT-NSVTSL-AWSPDGKRLASGSAD 282 (289)
T ss_pred hcCCceEEEEEcCC---------CcEEE---EEcCCCcEEEEEcCCceeEEEccccC-CcEEEE-EECCCCCEEEEecCC
Confidence 11113356788887 44554 45678999999999988888887554 677777 8999999999999 9
Q ss_pred CcEEEEc
Q 009022 483 RSIFIWR 489 (546)
Q Consensus 483 g~i~vwd 489 (546)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 32
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-34 Score=239.14 Aligned_cols=310 Identities=16% Similarity=0.219 Sum_probs=236.4
Q ss_pred CCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-----------------ceeEEecccCCCceEE
Q 009022 157 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-----------------SEKIVYGNIHSCIVNN 219 (546)
Q Consensus 157 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~ 219 (546)
-|..-+-..+..|++++.+.+|+|+| .++|+|+.|..|+|.|++.. ..+......|...|++
T Consensus 99 e~~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 99 EPSEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred CCcccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 33344456788999999999999999 79999999999999998621 1222333579999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009022 220 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS 299 (546)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 299 (546)
+.|+|. ...|++++.|++|++||+......+.++.-... .+|.+|+|+|.|.+|++|+..-.+++||+.+.+
T Consensus 178 l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~-------~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 178 LDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT-------EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred eeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhcc-------ceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 999999 999999999999999999876655554433222 259999999999999999999999999999977
Q ss_pred CCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc
Q 009022 300 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR 379 (546)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~ 379 (546)
..........|.+.|+++.+++ .+++.++++.||.|+|||--+.++...+........|.+..|..+++|+++.+.|..
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 6554445566778999999999 999999999999999999866555444443334567999999999999999999999
Q ss_pred EEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 380 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
+++|.+.+++++........... ........|+.. ..|+. +---..+.+.-||.+++..+..+...
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgr---q~~rtqAvFNht---------EdyVl--~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGR---QKHRTQAVFNHT---------EDYVL--FPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred eeeeeecCCceEEEEecCCcccc---hhhhhhhhhcCc---------cceEE--ccccccCceeeccccchhhhhhcccC
Confidence 99999999987542211110100 000112233332 22222 12233466889999999988888766
Q ss_pred CCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 460 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
|.+.+..+ .-||.+.-+.+|+ |-.+++|--+
T Consensus 395 Hn~a~R~i-~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 395 HNGAVRWI-VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCceEE-EeCCCCCceeeecccceeeeeeec
Confidence 66777777 7899999999999 9999999643
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-34 Score=269.91 Aligned_cols=264 Identities=18% Similarity=0.191 Sum_probs=214.5
Q ss_pred CCCccccccccccccCCccccCCCCCCCCchhhhhc--ccCCCCCCCC----------CCccCCCceeeeeccccCCCeE
Q 009022 107 PGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFER--QLRPNMTYMK----------PAHVIPDQVNCAVIRYHSRRVT 174 (546)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~h~~~V~ 174 (546)
..+..+.|..+......++.+-.+..+.+|.+.... .++....... ............++.||.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 444455666665555555555567777777665321 1111111111 1111122334567999999999
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.+.|+|+. ++|++++.|+++|+|.+.+..+...+ .+|..||..+.|+|. |-+||+++.|++.++|.....++++.+.
T Consensus 456 g~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 456 GCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeecccc-cceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999998 79999999999999999999988888 699999999999999 9999999999999999999999999887
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.|.. .|.|+.|+|+..|+++|+.|.+|++||+.++..++ .+.+|.++|.+++|+| +|.+|++|+.||
T Consensus 533 ghls---------DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp-~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 533 GHLS---------DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSP-CGRYLASGDEDG 599 (707)
T ss_pred cccc---------ccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcC-CCceEeecccCC
Confidence 7765 48999999999999999999999999999987654 4567888999999999 999999999999
Q ss_pred eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 335 FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.|.+||+.++.... ...+|.+.|.++.|+.+|..||+|+.|++|++||+..-
T Consensus 600 ~I~iWDl~~~~~v~--~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVK--QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchh--hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999998755532 23479999999999999999999999999999998653
No 34
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=5.9e-33 Score=249.27 Aligned_cols=323 Identities=17% Similarity=0.217 Sum_probs=235.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce----eEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
..|.+|+..|.++++.|.| ..|++|+.|-+|++||+..... ...+.......|+++.|++. +..|++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-CCeEEEEecCcce
Confidence 3577899999999999999 5799999999999999986432 22333456678999999999 8888888888899
Q ss_pred EEEECCCCceeeeeecCC---CCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEee---cCCC
Q 009022 240 SCTDLETGLALSLMNVNP---NGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIH---RKGS 312 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~ 312 (546)
+|+|-.........+... ....+..+...++|.+|+|. ...+++++.||++++|++...+...+++... ....
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 999976554444433321 11123344457999999996 4678999999999999998876554444432 2334
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCC--cEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~--~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
+++.++|+| ++.+||+|..||.|.+|+.+.......+... .|.. .|+||.|+++|++|++-+.|+++++||++..+
T Consensus 319 ~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 319 PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 789999999 9999999999999999998654443333322 5766 89999999999999999999999999998654
Q ss_pred CCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceee
Q 009022 390 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK 469 (546)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~ 469 (546)
. +. .....+........++|+|+ ..+++.|.-+. -+...+.+.+||..+...++.+.-.. ..+..+ .
T Consensus 398 k--pL---~~~tgL~t~~~~tdc~FSPd---~kli~TGtS~~---~~~~~g~L~f~d~~t~d~v~ki~i~~-aSvv~~-~ 464 (641)
T KOG0772|consen 398 K--PL---NVRTGLPTPFPGTDCCFSPD---DKLILTGTSAP---NGMTAGTLFFFDRMTLDTVYKIDIST-ASVVRC-L 464 (641)
T ss_pred c--ch---hhhcCCCccCCCCccccCCC---ceEEEeccccc---CCCCCceEEEEeccceeeEEEecCCC-ceEEEE-e
Confidence 2 11 11111122222246899997 44555565554 56667899999999999988886654 445555 7
Q ss_pred ecCCCcEEEEec-CCcEEEE-cCC---CCCccceeecc
Q 009022 470 LHPRDDVLASGS-SRSIFIW-RPK---EKSELVEQKEE 502 (546)
Q Consensus 470 ~s~~~~~l~sgs-dg~i~vw-d~~---~~~~~~~~~~~ 502 (546)
|+|.-+.|+.|+ ||+++|| |.. .|..+..++.+
T Consensus 465 WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~ 502 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKPP 502 (641)
T ss_pred ecchhhheeeecCCCceEEEECccccccchhheeecCc
Confidence 999988888877 9999886 332 34444444443
No 35
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=228.37 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=222.7
Q ss_pred EecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC
Q 009022 208 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 287 (546)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 287 (546)
...++|.+.|.++.|+++ .++|++++.||.+.|||.-+......+..+.. -|..++|+|.|+++|+|+-|
T Consensus 49 r~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcC
Confidence 334899999999999999 99999999999999999999888887766543 48999999999999999999
Q ss_pred CcEEEEeCCCCCCC---cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEE
Q 009022 288 GFLYLVDARTNSRS---GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 364 (546)
Q Consensus 288 g~i~i~d~~~~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 364 (546)
....||++.+.... .....+.+|.+.+.+..|.+ ...|++++.|.+..+||+.+++... ...+|.+.|.++++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~--~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQ--VFHGHTGDVMSLSL 194 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEE--EecCCcccEEEEec
Confidence 99999999865222 22234567788999999985 5678999999999999997655422 22389999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcce
Q 009022 365 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 442 (546)
Q Consensus 365 ~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i 442 (546)
+| +++.+++|+-|+..++||++.+.+.+ .|.+|.. +-.+.|.|+ |.-++ +|+.|++.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~q---------tF~ghesDINsv~ffP~---------G~afa---tGSDD~tc 253 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQ---------TFEGHESDINSVRFFPS---------GDAFA---TGSDDATC 253 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeE---------eecccccccceEEEccC---------CCeee---ecCCCcee
Confidence 99 99999999999999999999886533 2333322 346889998 76677 89999999
Q ss_pred EEEECCchhhhHhhcCC-CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEee
Q 009022 443 DFIDITTGQLVAEVMDP-NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCG 509 (546)
Q Consensus 443 ~iwd~~~~~~~~~~~~~-~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 509 (546)
++||++..+.+..+... ....+.++ +||..|++|++|. |.++.+||.-.++.+..+.+|...|.|-
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv-~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSV-AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeE-EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 99999999988887643 23567777 9999999999998 9999999999999999999999988773
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-32 Score=251.29 Aligned_cols=306 Identities=16% Similarity=0.236 Sum_probs=255.5
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+.+..|+..|.|+.|+|.. .+++++-..|.|.||+.++......+ ....-||++..|.+. .+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec-cceEEEecCCceEEEEe
Confidence 3466699999999999999 48888999999999999998888887 567889999999998 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
..++..+..+..|.. .|.+++.+|...++++++.|-.|++||....-...+....|.| .|.+++|+|.+
T Consensus 84 ynt~ekV~~FeAH~D---------yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD 152 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSD---------YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKD 152 (794)
T ss_pred cccceeeEEeecccc---------ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCC
Confidence 999999999988776 4999999999999999999999999999886655554455555 99999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
.+.+++++.|++|+||.+.+..+. +...+|...|+|+++-+ +..+|++|+.|.+|+|||.++..++..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~n--fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------- 222 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPN--FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------- 222 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCc--eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH--------
Confidence 999999999999999999755443 33338999999999998 557999999999999999998776443
Q ss_pred CCcccCCc-eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEe
Q 009022 402 DFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 480 (546)
Q Consensus 402 ~~~~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sg 480 (546)
+.+|... ..+.|+|. =.+++ +|+.||+++||+..|-++..++.-.- ..+.++ +-.+.++.++.|
T Consensus 223 -LeGHt~Nvs~v~fhp~---------lpiii---sgsEDGTvriWhs~Ty~lE~tLn~gl-eRvW~I-~~~k~~~~i~vG 287 (794)
T KOG0276|consen 223 -LEGHTNNVSFVFFHPE---------LPIII---SGSEDGTVRIWNSKTYKLEKTLNYGL-ERVWCI-AAHKGDGKIAVG 287 (794)
T ss_pred -hhcccccceEEEecCC---------CcEEE---EecCCccEEEecCcceehhhhhhcCC-ceEEEE-eecCCCCeEEEe
Confidence 2233322 25677776 22333 89999999999999998888876554 778877 677888889999
Q ss_pred cCCcEEEEcCCCCCccceeeccceEEEe
Q 009022 481 SSRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 481 sdg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
.|....+..+..+.+..++...+.++.+
T Consensus 288 ~Deg~i~v~lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 288 FDEGSVTVKLGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred ccCCcEEEEccCCCCceeecCCccEEEE
Confidence 9766677788888888888877777655
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.4e-32 Score=282.24 Aligned_cols=293 Identities=15% Similarity=0.189 Sum_probs=220.6
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc----e--eEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----E--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
+..|.+.|.+++|+|+| .+||+|+.|+.|+||++.... . .......+...|.+++|+|..+.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 55699999999999999 699999999999999975421 0 0111123456899999998657899999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
++||+.+++.+..+..|.. .|++++|+| ++.+|++|+.||.|++||++++...... . ....+.++.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~---------~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~-~~~~v~~v~ 624 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEK---------RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---K-TKANICCVQ 624 (793)
T ss_pred EEEECCCCeEEEEecCCCC---------CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---e-cCCCeEEEE
Confidence 9999999888877765543 599999997 7899999999999999999886544322 2 234789999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
|++.++.+|++|+.||.|++||+++.... .....+|...|.++.|. ++.+|++++.|++|++||+..+....... .+
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~-~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l 701 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLP-LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PL 701 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCcc-ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ce
Confidence 97657999999999999999999864421 22224799999999997 68899999999999999997542110000 11
Q ss_pred eccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc------------CCCCCccc
Q 009022 399 HSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM------------DPNITTIS 465 (546)
Q Consensus 399 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~------------~~~~~~i~ 465 (546)
..+.++.. ...+.|+|+ +.+++ +|+.|+.|+||+......+..+. .++...+.
T Consensus 702 --~~~~gh~~~i~~v~~s~~---------~~~la---sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 702 --HSFMGHTNVKNFVGLSVS---------DGYIA---TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred --EEEcCCCCCeeEEEEcCC---------CCEEE---EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 11222222 235678887 67777 89999999999986554332111 12224567
Q ss_pred ceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 466 PVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 466 ~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
++ +|+|++.+|++|+ ||.|+||++
T Consensus 768 ~v-~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SV-CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EE-EEcCCCCeEEEecCCCcEEEEec
Confidence 77 8999999999999 999999986
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-34 Score=243.73 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=226.0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|..+|+.+.|+|+ -.++++++.|++|++||..+++....++.+.. .+..++|+..|++|++++.|-.+
T Consensus 105 ~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~---------sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTD---------SVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred hccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhcccc---------ceeEEEEecCccEEEecCCccch
Confidence 569999999999999 88999999999999999999999888877665 39999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS 369 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 369 (546)
.+||..+.....+....+.| .|.+++|-| .+.+|++++.|.+|+.|++.++-. +..+ +|..+|..+..+.+|.
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h--~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c---v~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEH--GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred hheeHHHHHHHHHHhcCccc--ceeeEEEEe-cCCeeeecccccceeEEeccccee---EEeccCchHhEEEEEecCCee
Confidence 99999874333333333444 799999999 889999999999999999986554 4444 7999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeE------EeeeeeecCCCCcCcceE
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV------IGRYISENYNGAALHPID 443 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------~g~~~~~~~~g~~d~~i~ 443 (546)
++++++.|.+|++|-+.++.+....+...+. .-+++|.|......+.. .|+++. +|+.|++|+
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~--------vEci~wap~~~~~~i~~at~~~~~~~~l~---s~SrDktIk 317 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHP--------VECIAWAPESSYPSISEATGSTNGGQVLG---SGSRDKTIK 317 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccc--------eEEEEecccccCcchhhccCCCCCccEEE---eecccceEE
Confidence 9999999999999999988654433321111 12567776543222221 135666 899999999
Q ss_pred EEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEeecccc
Q 009022 444 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADK 513 (546)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 513 (546)
+||+.+|.++.++.+|. ..|..+ +|+|.|+||+++. |++|++||+.++++..++..|...+++-...+
T Consensus 318 ~wdv~tg~cL~tL~ghd-nwVr~~-af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHD-NWVRGV-AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred EEeccCCeEEEEEeccc-ceeeee-EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 99999999999998887 888888 9999999999999 99999999999999999999988877744443
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=245.99 Aligned_cols=271 Identities=18% Similarity=0.274 Sum_probs=222.8
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF 200 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~ 200 (546)
+-.+++++..+...+|+-.. ...-.+++.|..+|+++.|+++| .+++||+.+|.|++|+.
T Consensus 108 GRRLltgs~SGEFtLWNg~~-------------------fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTS-------------------FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQP 167 (464)
T ss_pred CceeEeecccccEEEecCce-------------------eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEeccc
Confidence 46788888777777775310 00114578899999999999999 79999999999999998
Q ss_pred CCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCE
Q 009022 201 YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGV 280 (546)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 280 (546)
.-....... ..|...|++++|+|+ ...|++++.||+|+|||....+..+.+..|.- .|.+++|+|...+
T Consensus 168 nmnnVk~~~-ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgw---------dVksvdWHP~kgL 236 (464)
T KOG0284|consen 168 NMNNVKIIQ-AHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW---------DVKSVDWHPTKGL 236 (464)
T ss_pred chhhhHHhh-HhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCC---------CcceeccCCccce
Confidence 754443333 556699999999998 99999999999999999998888777766544 4999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEE
Q 009022 281 VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVN 360 (546)
Q Consensus 281 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 360 (546)
|++|+.|..|++||.+++..+. ..+.|...|..+.|+| ++++|+++|.|..+++||+++.+. .+...+|...|+
T Consensus 237 iasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHKKDVT 310 (464)
T ss_pred eEEccCCceeEeecCCCcchhh---hhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHH--HHHhhcchhhhe
Confidence 9999999999999999988765 4566777999999999 889999999999999999986554 233347999999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcC
Q 009022 361 SAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 439 (546)
Q Consensus 361 ~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d 439 (546)
++.|+| ...+|.+|+.||.|..|.+...+. +..........+.+++|+|- |.+++ +|+.|
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p-------~~~i~~AHd~~iwsl~~hPl---------Ghil~---tgsnd 371 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEP-------LGEIPPAHDGEIWSLAYHPL---------GHILA---TGSND 371 (464)
T ss_pred eeccccccccceeeccCCCceEEEecccccc-------ccCCCcccccceeeeecccc---------ceeEe---ecCCC
Confidence 999999 888999999999999999873222 12222334445578999998 99998 89999
Q ss_pred cceEEEEC
Q 009022 440 HPIDFIDI 447 (546)
Q Consensus 440 ~~i~iwd~ 447 (546)
.++++|.-
T Consensus 372 ~t~rfw~r 379 (464)
T KOG0284|consen 372 RTVRFWTR 379 (464)
T ss_pred cceeeecc
Confidence 99999975
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.2e-33 Score=246.44 Aligned_cols=295 Identities=14% Similarity=0.147 Sum_probs=236.2
Q ss_pred CceeeeccCCCccccccccccc--cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEE
Q 009022 99 KPCFLCKMPGHTTMSCPHRVAT--EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCL 176 (546)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 176 (546)
....+..+.||+.++....+-+ ...+++++.+..+++|+.... ..|+++|.||..+|..+
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~ 264 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDA 264 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhh
Confidence 3444677899996665555544 577899999999999975432 34668899999999999
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
+|+++| .-++|++.|+.|++||++++++...+. ....++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..+
T Consensus 265 ~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 265 SFNNCG-TSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred hccccC-CeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999999 679999999999999999999998885 45578999999996699999999999999999999988877655
Q ss_pred CCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeE
Q 009022 257 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFA 336 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 336 (546)
.. .|..+.|-++++++++++.++.+++|+.+.+-.+........| .+.++..+| ++.++++-+.|+.|
T Consensus 342 Lg---------~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h--smP~~~~~P-~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 342 LG---------AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH--TMPCLTLHP-NGKWFAAQSMDNYI 409 (503)
T ss_pred hh---------heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhc--cCcceecCC-CCCeehhhccCceE
Confidence 44 5999999999999999999999999999987766554444455 678899999 99999999999999
Q ss_pred EEEECCCCCCCceeeec-CC--CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc-CCceeE
Q 009022 337 RIWDIRRLEAGSSLCDL-PH--KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRA 412 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~-~~--~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 412 (546)
.+|.+...-....-..+ +| .+.-..+.|||+|.+|++|+.+|.+.+||.++-++... +..+ ..++.+
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~---------lkah~~~ci~v 480 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK---------LKAHDQPCIGV 480 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc---------cccCCcceEEE
Confidence 99997543222111112 33 44566789999999999999999999999998776432 2222 334678
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
.|+|...+ .++ +++.+|.|++|+
T Consensus 481 ~wHP~e~S--------kva---t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPS--------KVA---TCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcc--------eeE---ecccCceeEecC
Confidence 99998643 233 677999999996
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=235.66 Aligned_cols=276 Identities=18% Similarity=0.285 Sum_probs=217.0
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
....|+|+.+.. ..+++|..|++|+|||..+..+...+ .+|++.|.|+.|. .+.|++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCc
Confidence 567899999963 35999999999999999998888877 7999999999997 5699999999999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
++.++-.|.. .|..+.|+ ..++++++.|..+.+||+.......-.....+|...|+.+.|+. .+++
T Consensus 269 ~l~tlihHce---------aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIV 334 (499)
T KOG0281|consen 269 PLNTLIHHCE---------AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV 334 (499)
T ss_pred hhhHHhhhcc---------eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEE
Confidence 9988876655 47888885 57999999999999999988664332223456666899999964 7999
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 408 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 408 (546)
+++.|.+|++|++.+......+ .+|...|.|+.+ .++++++||.|.+|++||+..|.++.... +|-.
T Consensus 335 sASgDRTikvW~~st~efvRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---------GHEe 401 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---------GHEE 401 (499)
T ss_pred EecCCceEEEEeccceeeehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---------chHH
Confidence 9999999999999876653333 279999999888 89999999999999999999998754221 1111
Q ss_pred ce-eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh---------hhHhhcCCCCCcccceeeecCCCcEEE
Q 009022 409 PF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ---------LVAEVMDPNITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 409 ~~-~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~v~~~s~~~~~l~ 478 (546)
.+ ++.|. .+.++ +|+.||+|+|||+.++. ++.++..|. +.+..+ .| |...++
T Consensus 402 LvRciRFd-----------~krIV---SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs-gRVFrL-QF--D~fqIv 463 (499)
T KOG0281|consen 402 LVRCIRFD-----------NKRIV---SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS-GRVFRL-QF--DEFQII 463 (499)
T ss_pred hhhheeec-----------Cceee---eccccceEEEEecccccCCcccccchHHHhhhhcc-ceeEEE-ee--cceEEE
Confidence 11 22232 44455 89999999999998764 344444444 556655 44 567788
Q ss_pred Eec-CCcEEEEcCCCCCcc
Q 009022 479 SGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 479 sgs-dg~i~vwd~~~~~~~ 496 (546)
+++ |.+|.|||+..+...
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 888 999999999887654
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=248.23 Aligned_cols=294 Identities=16% Similarity=0.222 Sum_probs=241.7
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
.....+.||...|.+++||.+. .++++|+ .+.|+||+..+.+++.++. ..-+.+..|.|. ++++++|...|.+.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg-d~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPG-DRYIVLGTKNGELQ 437 (888)
T ss_pred cceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCC-CceEEEeccCCceE
Confidence 3345688999999999999987 5667665 5689999999999998884 348899999999 99999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC----CcceEE-----eecCC
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR----SGEAIL-----IHRKG 311 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~-----~~~~~ 311 (546)
+||+.+...+.++..|.. .+++++.+|++..+++|+.|.+|++||..-... ..+.+. ...-.
T Consensus 438 vfdlaS~~l~Eti~AHdg---------aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDG---------AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred EEEeehhhhhhhhhcccc---------ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 999999888877765544 599999999999999999999999999753211 001111 12234
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
..|.|+.++| ++.+|+++-.|.+++||-+.+.+. .+...+|.-+|.||.++|++++++|||.|..|+||-+..|.+-
T Consensus 509 ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 509 DDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred ccEEEEEEcC-CCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence 5799999999 999999999999999999987554 4444599999999999999999999999999999999988873
Q ss_pred CCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeec
Q 009022 392 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 471 (546)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s 471 (546)
.. -+.+.-..+++.|.|. ..++. +++.|+.|+-||......++++.+|+ ..+.++ +.+
T Consensus 586 KS--------~fAHdDSvm~V~F~P~---------~~~FF---t~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cL-av~ 643 (888)
T KOG0306|consen 586 KS--------FFAHDDSVMSVQFLPK---------THLFF---TCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCL-AVS 643 (888)
T ss_pred hh--------hhcccCceeEEEEccc---------ceeEE---EecCcceEEeechhhhhhheeeccch-heeeee-EEc
Confidence 21 1222233467888886 33333 78899999999999999999999988 788888 999
Q ss_pred CCCcEEEEec-CCcEEEEcCCCCC
Q 009022 472 PRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 472 ~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
|+|.+++++| |.+|++|.-....
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCcc
Confidence 9999999999 9999999976543
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-31 Score=217.34 Aligned_cols=276 Identities=20% Similarity=0.248 Sum_probs=223.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE-ecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
+.+++|.+.|.+++|+.+| ..|++|+.|+++.||++........ ...+|.+.|-.++|+|.++.+|++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5678899999999999999 6899999999999999987643332 2368999999999999889999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|++.+++...+..... =.-+.|+|+|.+++++..|..|.++|.++.+..... .....+..++|+-
T Consensus 93 d~r~~k~~~~i~~~~e----------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~----~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGE----------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE----QFKFEVNEISWNN- 157 (313)
T ss_pred EeccCcEEEEeeccCc----------ceEEEEcCCCCEEEEecCcccEEEEEecccceeehh----cccceeeeeeecC-
Confidence 9999999988765543 245789999999999999999999999987654332 2233678889986
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
++++|+.....|.|.|......++...+. .|.....||.|+|+|++||+|+.|..+.+||+..--+. ..
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~---------R~ 226 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE---------RC 226 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhh---------ee
Confidence 77777776778999999987666544443 68999999999999999999999999999999753332 22
Q ss_pred CcccCCce-eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 403 FNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 403 ~~~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
+.+.--++ .+.|+.+ |+|+| +|+.|..|-|=++.||..+..++.. +....| +|+|...+||.+.
T Consensus 227 isRldwpVRTlSFS~d---------g~~lA---SaSEDh~IDIA~vetGd~~~eI~~~--~~t~tV-AWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHD---------GRMLA---SASEDHFIDIAEVETGDRVWEIPCE--GPTFTV-AWHPKRPLLAYAC 291 (313)
T ss_pred eccccCceEEEEeccC---------cceee---ccCccceEEeEecccCCeEEEeecc--CCceeE-EecCCCceeeEEe
Confidence 22222222 4566666 99999 9999999999999999988887543 556677 9999999999865
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-32 Score=223.36 Aligned_cols=289 Identities=19% Similarity=0.227 Sum_probs=237.4
Q ss_pred eccccCCCeEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 165 VIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
+-.||+.+|..|+|+| +| .+|++++.|+.-.+-+-.++.-+-++ .+|.+.|.+...+.+ ....++++.|=+-++
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n-a~~aasaaadftakv 85 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN-ATRAASAAADFTAKV 85 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch-hhhhhhhcccchhhh
Confidence 4578999999999986 67 79999999999999999999999988 699999999999888 888899999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
||.-+|..+..+... ..|.+++|+.+.++|++|+.+..+++||++....... ...+|.+.|..+.|+.
T Consensus 86 w~a~tgdelhsf~hk----------hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHK----------HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhhh----------heeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEec
Confidence 999999888776432 1489999999999999999999999999998776543 4456667899999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
..+.|+++..|++||+||.+++...+ .+....+|+++.++++|++|.++ ..+.|.+||..+..++.....
T Consensus 154 -eD~~iLSSadd~tVRLWD~rTgt~v~---sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~----- 223 (334)
T KOG0278|consen 154 -EDKCILSSADDKTVRLWDHRTGTEVQ---SLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM----- 223 (334)
T ss_pred -cCceEEeeccCCceEEEEeccCcEEE---EEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-----
Confidence 77788888999999999999766544 44457789999999999877655 677899999988766442221
Q ss_pred CCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 402 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
. ...-+...+|+. +.|+ +|+.|..++.||..||..+..+...+.+.|.+| .|+|+|...|+||
T Consensus 224 --P--~nV~SASL~P~k--------~~fV----aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV-rFSPdGE~yAsGS 286 (334)
T KOG0278|consen 224 --P--CNVESASLHPKK--------EFFV----AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-RFSPDGELYASGS 286 (334)
T ss_pred --c--cccccccccCCC--------ceEE----ecCcceEEEEEeccCCceeeecccCCCCceEEE-EECCCCceeeccC
Confidence 1 111244556663 3344 599999999999999999888743444899999 9999999999999
Q ss_pred -CCcEEEEcCCCCCc
Q 009022 482 -SRSIFIWRPKEKSE 495 (546)
Q Consensus 482 -dg~i~vwd~~~~~~ 495 (546)
||+|+||....++.
T Consensus 287 EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEEEEecCCCc
Confidence 99999999877653
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-31 Score=216.52 Aligned_cols=299 Identities=18% Similarity=0.194 Sum_probs=227.9
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
.|+||..+++.|.|+.+| .+|++++.|.++.||-..+++.+-.+ .+|.+.|+|+....+ ...+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC-cceeeeccccceeEEEEc
Confidence 478999999999999999 59999999999999999889988888 799999999999998 999999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCC----CCcceEEeecCCCcEE
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-----NFGFLYLVDARTNS----RSGEAILIHRKGSKVV 315 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~----~~~~~~~~~~~~~~i~ 315 (546)
.+|+.+..++... +|..+.|+++|++++..+ ..+.|.++|++... .....+....+...++
T Consensus 82 ~tGk~la~~k~~~----------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 82 ETGKQLATWKTNS----------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred CCCcEEEEeecCC----------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 9999999887654 599999999999988875 44789999998533 1112334444556899
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 394 (546)
.+-|.| -+.+|++|..+|.|.+||++++.. .+.. ..|...|+.|+++|+..+++++|.|.+-++||+.+-.++...
T Consensus 152 ~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGP-LGETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecc-cCCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 999999 999999999999999999987543 2222 258889999999999999999999999999999876653321
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecC--CCCcC--cceEEEECCchhhhHhhcCCCCCcccceeee
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAAL--HPIDFIDITTGQLVAEVMDPNITTISPVNKL 470 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~g~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~ 470 (546)
. .....-+.+.+|... .+.+.|-.-|... +.... -.-++|++-..+.+..+.+|- +.|.+| +|
T Consensus 229 ~---------te~PvN~aaisP~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsv-Af 295 (327)
T KOG0643|consen 229 T---------TERPVNTAAISPLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSV-AF 295 (327)
T ss_pred e---------ecccccceecccccc--eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCccee-EE
Confidence 1 111112455566421 1111110000000 00001 123444554555666676776 899999 99
Q ss_pred cCCCcEEEEec-CCcEEEEcCCC
Q 009022 471 HPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 471 s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
||+|...++|+ ||.|+|.-...
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCcccccCCCCceEEEEEecc
Confidence 99999999999 99999986654
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-31 Score=212.16 Aligned_cols=259 Identities=17% Similarity=0.206 Sum_probs=217.5
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
..+.++|..+.|+-+ ++|.++++.|.+|++|+...+.++.++..+.. .|..++.+.+...|++++.|..+
T Consensus 14 ~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~---------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH---------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCc---------eeeeccccccccccccCCCCceE
Confidence 679999999999999 99999999999999999999999999877654 48899999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS 369 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 369 (546)
.+||+.+++... .+.+|.+.|+.+.|+. +...+++|+.|..+++||.|+... .+++.+ .....|.++.. .+.
T Consensus 84 ~vwDV~TGkv~R---r~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v--~~h 156 (307)
T KOG0316|consen 84 QVWDVNTGKVDR---RFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDV--AEH 156 (307)
T ss_pred EEEEcccCeeee---ecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEe--ccc
Confidence 999999998765 5577888999999998 889999999999999999987543 344444 46678999888 567
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
.|++|+.||+++.||++.|++... .+...+ .++.|+++ |+... .++.+++|++.|-.+
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sD--------y~g~pi--t~vs~s~d---------~nc~L---a~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPI--TSVSFSKD---------GNCSL---ASSLDSTLRLLDKET 214 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehh--------hcCCcc--eeEEecCC---------CCEEE---Eeeccceeeecccch
Confidence 899999999999999999876321 122222 36788887 54444 588899999999999
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
|++++.+.+|......--+++......+++|+ ||.|++||+..+..+..+..+..+++.
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~ 274 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVT 274 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEE
Confidence 99999999997554443336788888999999 999999999999999999888877443
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-31 Score=252.16 Aligned_cols=299 Identities=19% Similarity=0.279 Sum_probs=243.8
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
|...+..|..|+|+|.. .+++++-..|.|++||.+-+.++..+ ..|.++|+.+.|+|. ..+|++|+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC-CCeEEecCCccEEEEEecc
Confidence 45567789999999998 48999999999999999988888877 689999999999999 9999999999999999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+.+++.++..|.. .|..+.|++.-.+|++++.|.+|+||+..+.+.+. .+..|.| .|.|.+|+| ...
T Consensus 82 ~rrclftL~GHlD---------YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-vltGHnH--YVMcAqFhp-tED 148 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLD---------YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-VLTGHNH--YVMCAQFHP-TED 148 (1202)
T ss_pred cceehhhhccccc---------eeEEeeccCCCceEEEccCCCeEEEEeccCCceEE-EEecCce--EEEeeccCC-ccc
Confidence 9999988877665 49999999999999999999999999999877654 2344444 999999999 899
Q ss_pred EEEEEeCCCeEEEEECCCCCC-----C--------------------ceeee-c-CCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 326 LLLSCGNDHFARIWDIRRLEA-----G--------------------SSLCD-L-PHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~-----~--------------------~~~~~-~-~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
+++++|.|.+|+|||+.-.+. + ..++. + +|...|+-++|+|.-.+|++|+.|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 999999999999999853211 0 11111 1 7999999999999999999999999
Q ss_pred cEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc
Q 009022 379 RLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 457 (546)
.|++|.+..-+.-. .-...+|. ...++.|+|. ..++. +.+.|++|+|||+...+.+.++.
T Consensus 229 qVKlWrmnetKaWE-------vDtcrgH~nnVssvlfhp~---------q~lIl---SnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWE-------VDTCRGHYNNVSSVLFHPH---------QDLIL---SNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eeeEEEecccccee-------ehhhhcccCCcceEEecCc---------cceeE---ecCCCccEEEEecccccceeeee
Confidence 99999987543211 11111222 2237888887 44444 78999999999999999999986
Q ss_pred CCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCCCccceeec
Q 009022 458 DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 458 ~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~~~~~ 501 (546)
..+ +.++.+ +.+|..+++|+|-|+.+.||.++...+..-+.+
T Consensus 290 ren-dRFW~l-aahP~lNLfAAgHDsGm~VFkleRErpa~~v~~ 331 (1202)
T KOG0292|consen 290 REN-DRFWIL-AAHPELNLFAAGHDSGMIVFKLERERPAYAVNG 331 (1202)
T ss_pred ccC-CeEEEE-EecCCcceeeeecCCceEEEEEcccCceEEEcC
Confidence 555 667766 999999999999999999999886655544443
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=231.56 Aligned_cols=298 Identities=18% Similarity=0.232 Sum_probs=245.2
Q ss_pred CCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-------ccCCCceEEEEEecCCCCE
Q 009022 157 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNPTNDGT 229 (546)
Q Consensus 157 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~ 229 (546)
.|+.....+-.+....+-|..|+|+| ++|++|+.||.|.||+..+++....+. --+..+|.|+.|+.+ ...
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEM 277 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEM 277 (508)
T ss_pred chHHhhhheecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHH
Confidence 34444444555677889999999999 799999999999999998876544332 237789999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeee-cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEee
Q 009022 230 VYAASSDGTVSCTDLETGLALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 308 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 308 (546)
|++|+.||.|++|.+.+|.+++.+. .|.. .|+|+.|+.++..+++++.|..+++.-+++++... .+.
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtk---------Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---Efr 345 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTK---------GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFR 345 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhcc---------CeeEEEEccCcchhhcccccceEEEeccccchhHH---Hhc
Confidence 9999999999999999999999886 3333 49999999999999999999999999999987765 446
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+|...|+...|.+ +|..+++++.||+|++|+..+.++...+...+...+|+++..-| +...+++|...++|.|.++..
T Consensus 346 GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 346 GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 7777999999999 99999999999999999999888877777778888999999988 788999999999999999863
Q ss_pred CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccce
Q 009022 388 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPV 467 (546)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v 467 (546)
. .+.. .+.........+.++.+|. |.++- +.+.|+.++.|.+.+|++-.++..|. ..+..+
T Consensus 425 Q-vVrs-----fsSGkREgGdFi~~~lSpk---------GewiY---cigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl 485 (508)
T KOG0275|consen 425 Q-VVRS-----FSSGKREGGDFINAILSPK---------GEWIY---CIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGL 485 (508)
T ss_pred e-EEee-----eccCCccCCceEEEEecCC---------CcEEE---EEccCcEEEEEEeecCceeeeeeccc-cccccc
Confidence 2 2111 0111111122256777887 77775 77899999999999999999888887 445566
Q ss_pred eeecCCCcEEEEec-CCcEEEEc
Q 009022 468 NKLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 468 ~~~s~~~~~l~sgs-dg~i~vwd 489 (546)
+-+|..++||+-+ ||.+++|.
T Consensus 486 -~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 486 -THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -ccCcccchhhhhcccchhhhcC
Confidence 7899999999988 99999996
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=5.8e-32 Score=231.30 Aligned_cols=271 Identities=17% Similarity=0.265 Sum_probs=209.3
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF 200 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~ 200 (546)
...++++.+++++++|+... ..|.++|.||++.|.|+.|.. +++++|+.|.+|+|||+
T Consensus 207 D~kiVSGlrDnTikiWD~n~-------------------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNS-------------------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDV 264 (499)
T ss_pred chhhhcccccCceEEecccc-------------------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEec
Confidence 45678888999999987332 345678999999999999964 68999999999999999
Q ss_pred CCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee---eeecCCCCCCCCCcccceEEEEecCC
Q 009022 201 YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPE 277 (546)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~ 277 (546)
++++++.++ .+|...|..+.|+ +.++++++.|.++.+||+.....+. .+.+|. ..|+.+.|+
T Consensus 265 ~tge~l~tl-ihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr---------AaVNvVdfd-- 329 (499)
T KOG0281|consen 265 NTGEPLNTL-IHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---------AAVNVVDFD-- 329 (499)
T ss_pred cCCchhhHH-hhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh---------hheeeeccc--
Confidence 999999888 5899999999998 5699999999999999998765332 232332 258888885
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCC
Q 009022 278 KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK 356 (546)
Q Consensus 278 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 356 (546)
.++|++++.|.+|++|++.+...+. ..++|...|.|+.+ .++++++|+.|.+|++||+.. +.++..+ +|.
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvR---tl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~---G~cLRvLeGHE 400 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVR---TLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC---GACLRVLEGHE 400 (499)
T ss_pred cceEEEecCCceEEEEeccceeeeh---hhhcccccceehhc---cCeEEEecCCCceEEEEeccc---cHHHHHHhchH
Confidence 4599999999999999999987765 34566667888888 569999999999999999964 4455555 899
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC-cccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
.-|.|+.| +.+.+++|+.||+|+|||+..+..-......+..... .+....+.+.|.. ..+. +
T Consensus 401 eLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-----------fqIv---s 464 (499)
T KOG0281|consen 401 ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-----------FQII---S 464 (499)
T ss_pred Hhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-----------eEEE---e
Confidence 99999999 6788999999999999999877543222221111111 2222334555543 2233 6
Q ss_pred CCcCcceEEEECCchhhh
Q 009022 436 GAALHPIDFIDITTGQLV 453 (546)
Q Consensus 436 g~~d~~i~iwd~~~~~~~ 453 (546)
.+.|.+|.|||...+..-
T Consensus 465 ssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccCCCeEEEEEcCCCCcc
Confidence 788999999999776543
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=248.46 Aligned_cols=300 Identities=13% Similarity=0.139 Sum_probs=193.1
Q ss_pred eeeecc-ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc---------cCCCceEEEEEec-------
Q 009022 162 NCAVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN---------IHSCIVNNIRFNP------- 224 (546)
Q Consensus 162 ~~~~~~-~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~------- 224 (546)
..+.+. .|.++|+++.||++| +|||+||.|+.|+||.+...+....-.. .-.+.+..+.-++
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 344566 899999999999999 8999999999999999865211000000 0000000000000
Q ss_pred ---CCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009022 225 ---TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 301 (546)
Q Consensus 225 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 301 (546)
..+......-..-.+.++.- +.-+. ..- |. ..|..|.|+.+ ++|++++.|.+|+||++....
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~e-kP~~e-f~G-Ht---------~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-- 401 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSE-KPFCE-FKG-HT---------ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-- 401 (712)
T ss_pred cccccccCCccccCCCccccccc-cchhh-hhc-cc---------hhheecccccC-CeeEeccccccEEeecCCCcc--
Confidence 00000000000001111110 00000 000 00 13667777754 567777778888888777543
Q ss_pred cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 302 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
.+....|...|+||+|+|.+.++|++|+.||.|+||++... +++....-..-|++++|.|+|++.++|+.+|.++
T Consensus 402 --CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 402 --CLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred --eeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC---eeEeehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 33556677799999999999999999999999999999642 3333334558899999999999999999999999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 461 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~ 461 (546)
+|+....++.....-.........+..+..+.|.|.... +++ ..+.|..|+|||.++..++..|.|.+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~-------~vL----VTSnDSrIRI~d~~~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD-------EVL----VTSNDSRIRIYDGRDKDLVHKFKGFRN 545 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC-------eEE----EecCCCceEEEeccchhhhhhhccccc
Confidence 999987665332111111111112224456778887654 222 357899999999999999999998764
Q ss_pred CcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 462 TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 462 ~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
..-.....|+.+|++|++|+ |..|+||+....
T Consensus 546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 546 TSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 43333337999999999999 999999998543
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.6e-31 Score=240.11 Aligned_cols=301 Identities=15% Similarity=0.135 Sum_probs=208.7
Q ss_pred hhccCccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCccccccccccccCCccccCCCCCCCCchhh
Q 009022 60 AKRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYV 139 (546)
Q Consensus 60 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (546)
-.+.+..++++++|.+++.|+.++....++..-.+ .....|...+.. +......++..+..... .+
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l---------~P~E~h~i~sl~-ys~Tg~~iLvvsg~aqa----kl 240 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL---------QPCETHQINSLQ-YSVTGDQILVVSGSAQA----KL 240 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhcc---------Ccccccccceee-ecCCCCeEEEEecCcce----eE
Confidence 45678889999999999999988877655532111 122333322111 11222222222211222 22
Q ss_pred hhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-----ccCC
Q 009022 140 FERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-----NIHS 214 (546)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~ 214 (546)
+.+........+++..++.. ....+||...++|.+|+|.....++|++.||++|||++...+....+. .+..
T Consensus 241 ~DRdG~~~~e~~KGDQYI~D---m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRD---MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred EccCCceeeeeeccchhhhh---hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 33433333334444444433 245789999999999999987889999999999999998754322221 3345
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEe
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVD 294 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 294 (546)
-+++.++|+|+ +.+||+|..||+|.+|+.........+.... .|.....|+||.|+++|++|++-+.|+.+++||
T Consensus 318 v~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~----AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 318 VPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD----AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred cCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeee----ccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 57899999999 9999999999999999986544333332221 122223699999999999999999999999999
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe------CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG------NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
+++.+.............+-+.++|+| +..+|++|. ..|.+.+||..+....+.+.. ....|..+.|+|.-
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i--~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI--STASVVRCLWHPKL 469 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecC--CCceEEEEeecchh
Confidence 999776544433333344678899999 999999986 357899999987666444432 46678899999988
Q ss_pred CEEEEEeCCCcEEEEEC
Q 009022 369 SKILTTSQDNRLRIWDS 385 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~ 385 (546)
+.|++|+.||.++||--
T Consensus 470 NQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYYD 486 (641)
T ss_pred hheeeecCCCceEEEEC
Confidence 88999999999998743
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=237.00 Aligned_cols=366 Identities=13% Similarity=0.183 Sum_probs=289.3
Q ss_pred eeeeccCCCc-cccccccccccCCccccCCCCCCCCchhhhhcc---cCCCCCC--------------------CCCCcc
Q 009022 101 CFLCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQ---LRPNMTY--------------------MKPAHV 156 (546)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------------~~~~~~ 156 (546)
...+.+.||. .+.+..+...+..+++++.+..+.+|+.+.+.. +++.... +-..|.
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 4556778888 445556666778899999999999998876653 2332221 112377
Q ss_pred CCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC------------------------------------
Q 009022 157 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------------------------------------ 200 (546)
Q Consensus 157 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~------------------------------------ 200 (546)
+.++.|..+...|.+.|+++++.+ +++++++.|+.++||++
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred cccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 778999999999999999999997 46888889999999988
Q ss_pred ------------------------------------------------------------------------------CC
Q 009022 201 ------------------------------------------------------------------------------YK 202 (546)
Q Consensus 201 ------------------------------------------------------------------------------~~ 202 (546)
.+
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 00
Q ss_pred C--------------------ce-------eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 203 V--------------------SE-------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 203 ~--------------------~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
. .. ...-..+|...|++++|+.+ ...+++|+ .+.|++|+..+.++++++..
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEecc
Confidence 0 00 00011458888999999987 65666655 57899999999999999865
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 335 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 335 (546)
. .+.+..|-|.++++++|...|.+.+||+........ ...|.+.|..++.+| ++..+++|+.|.+
T Consensus 413 ~-----------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et---i~AHdgaIWsi~~~p-D~~g~vT~saDkt 477 (888)
T KOG0306|consen 413 G-----------YILASKFVPGDRYIVLGTKNGELQVFDLASASLVET---IRAHDGAIWSISLSP-DNKGFVTGSADKT 477 (888)
T ss_pred c-----------cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh---hhccccceeeeeecC-CCCceEEecCCcE
Confidence 4 388899999999999999999999999998766543 346777999999999 9999999999999
Q ss_pred EEEEECCCCCC--C---cee-----eecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 336 ARIWDIRRLEA--G---SSL-----CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 336 i~iwd~~~~~~--~---~~~-----~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
|++||..-... + +.+ ..+.-...|.|+.+||+|++|+++=-|++|+||-+.+-++. ..-+++
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf--------lsLYGH 549 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF--------LSLYGH 549 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee--------eeeccc
Confidence 99999742111 1 111 12245678999999999999999999999999998876541 222334
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCc
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 484 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~ 484 (546)
....+++..+|+ +++++ +|+.|.+|+||-+.-|.+.+.+.+|. ..+.++ .|-|...+++++| |+.
T Consensus 550 kLPV~smDIS~D---------Skliv---TgSADKnVKiWGLdFGDCHKS~fAHd-DSvm~V-~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 550 KLPVLSMDISPD---------SKLIV---TGSADKNVKIWGLDFGDCHKSFFAHD-DSVMSV-QFLPKTHLFFTCGKDGK 615 (888)
T ss_pred ccceeEEeccCC---------cCeEE---eccCCCceEEeccccchhhhhhhccc-CceeEE-EEcccceeEEEecCcce
Confidence 444567888888 77777 89999999999999999999998887 888888 8999999999999 999
Q ss_pred EEEEcCCCCCccceeeccceEEEe
Q 009022 485 IFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 485 i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
|+-||...-+.++++.+|...+.|
T Consensus 616 vKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred EEeechhhhhhheeeccchheeee
Confidence 999999999999999999887666
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-29 Score=211.24 Aligned_cols=293 Identities=19% Similarity=0.304 Sum_probs=235.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC--CCeEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS--DGTVSC 241 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~i 241 (546)
+.|....+.|++|.|+++| .+|++++.|.+|+|||..++.....+ ..+...|..++|... ...++.++. |.+|+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~-~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC-CceEEEccCCCCCceEE
Confidence 3455567899999999999 67888999999999999999988888 567778999999877 667777766 889999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
.++.+.+.++.+.+|.. .|++|+.+|-+..+++++.|++|++||++..+....+ +.. .-..++|.|
T Consensus 85 Lsl~dNkylRYF~GH~~---------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~--~~pi~AfDp 150 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKK---------RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---NLS--GRPIAAFDP 150 (311)
T ss_pred EEeecCceEEEcCCCCc---------eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---ecC--CCcceeECC
Confidence 99999999999988776 5999999999999999999999999999976655432 111 234578999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCce--eeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSS--LCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
.|-++|++.....|++||+|....+.- +... +.....+.|.|+|+|++|+.++..+.+.+.|.-+|.......
T Consensus 151 -~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs--- 226 (311)
T KOG1446|consen 151 -EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS--- 226 (311)
T ss_pred -CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe---
Confidence 999999998888999999998644322 2111 456778999999999999999999999999999887533211
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEE
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 478 (546)
... .....++...|.|+ |+++. +|+.||+|.+|++.+|..+..+.+.+...+.++ .|.|...+++
T Consensus 227 -~~~-~~~~~~~~a~ftPd---------s~Fvl---~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~-~fnP~~~mf~ 291 (311)
T KOG1446|consen 227 -GYP-NAGNLPLSATFTPD---------SKFVL---SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV-RFNPRYAMFV 291 (311)
T ss_pred -ecc-CCCCcceeEEECCC---------CcEEE---EecCCCcEEEEEcCCCcEeeEecCCCCCCcccc-ccCCceeeee
Confidence 111 11122367889998 88888 899999999999999999999999876777777 8999877777
Q ss_pred EecCCcEEEEcCCCC
Q 009022 479 SGSSRSIFIWRPKEK 493 (546)
Q Consensus 479 sgsdg~i~vwd~~~~ 493 (546)
+++ ..+.+|=....
T Consensus 292 sa~-s~l~fw~p~~~ 305 (311)
T KOG1446|consen 292 SAS-SNLVFWLPDED 305 (311)
T ss_pred ecC-ceEEEEecccc
Confidence 665 77888876543
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=227.71 Aligned_cols=293 Identities=17% Similarity=0.313 Sum_probs=232.3
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
+..|.||.+.|.||+=+|.....+|+|+.||.|+|||+.+..+...+ ..|.+.|..|++.. ..+++++.|.+|+.|
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ---TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc---cceEEecCCcceeee
Confidence 45689999999999999987667999999999999999998888888 78999999999985 589999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
-+... .+.++.... .+..|.-+..+..+++++. .|.|||.....+...+ .-....|.++.|+|.
T Consensus 135 k~~~~-p~~tilg~s----------~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm---swG~Dti~svkfNpv 198 (433)
T KOG0268|consen 135 KIDGP-PLHTILGKS----------VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM---SWGADSISSVKFNPV 198 (433)
T ss_pred eccCC-cceeeeccc----------cccccccccccccccccCc--eeeecccccCCcccee---ecCCCceeEEecCCC
Confidence 98753 444433221 3566666667777888775 7999999876665432 233347999999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
...+|++++.|+.|.|||+++..+.+.+. ....-+.|+|+|.+..|++++.|..++.||++.-.. | ...
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p------~~v 267 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--P------LNV 267 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceee---eeccccceecCccccceeeccccccceehhhhhhcc--c------chh
Confidence 78899999999999999999876654443 234457899999998999999999999999975331 1 122
Q ss_pred CcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 403 FNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 403 ~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
+..+.. .+.+.|+|. |+-++ +|+.|.+|+||.+..+.....+.......+.+| .||.|.+|+++||
T Consensus 268 ~~dhvsAV~dVdfspt---------G~Efv---sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V-k~S~Dskyi~SGS 334 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPT---------GQEFV---SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV-KYSMDSKYIISGS 334 (433)
T ss_pred hcccceeEEEeccCCC---------cchhc---cccccceEEEeecCCCcchhhhhHhhhheeeEE-EEeccccEEEecC
Confidence 233333 367899998 77776 899999999999998877666655566778888 8999999999999
Q ss_pred -CCcEEEEcCCCCCcccee
Q 009022 482 -SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 482 -dg~i~vwd~~~~~~~~~~ 499 (546)
|+.|++|.....+.+..+
T Consensus 335 dd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 335 DDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred CCcceeeeecchhhhcCCC
Confidence 899999998776655544
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=208.28 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=215.5
Q ss_pred eEEEEEcCCCCcEEEEEc-------CCCcEEEEeCCCCceeEEe-cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 173 VTCLEFHPTNNHILLSGD-------KKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
=.++.|||--.+.||.+. ..|.+.|.++.....+... ...-...+..++|+++..+.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 357889995434454442 3688999998643332222 22356789999999998899999999999999996
Q ss_pred CCC-ceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 245 ETG-LALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
... .++..++-|.. .|.++.|++ ....+++++.|++|++|+...++.+. .+.+|...|...+|+|.
T Consensus 91 ~~~s~Pi~~~kEH~~---------EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKR---------EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPH 158 (311)
T ss_pred CCCCcchhHHHhhhh---------heEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCC
Confidence 432 34455544433 599999998 46678888999999999988766544 46677789999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
.++++++++.|+++++||++.. ++.+....|...|.|+.|+. +.+.|+||+.|+.|++||+++-+. | ..
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~--gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--p------l~ 228 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSP--GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--P------LF 228 (311)
T ss_pred CCCeEEEccCCceEEEEEecCC--CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--c------ce
Confidence 9999999999999999999865 33444457889999999998 888999999999999999986552 1 11
Q ss_pred CCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC-CCcEEEE
Q 009022 402 DFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RDDVLAS 479 (546)
Q Consensus 402 ~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~s 479 (546)
.+.++.. .-++.|+|.. ..+++ +++.|-+++|||...+........+|..-++.+ .||+ +..++|+
T Consensus 229 eL~gh~~AVRkvk~Sph~--------~~lLa---SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~-Dws~~~~~~vAs 296 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHH--------ASLLA---SASYDMTVRIWDPERQDSAIETVDHHTEFVCGL-DWSLFDPGQVAS 296 (311)
T ss_pred eecCCceEEEEEecCcch--------hhHhh---hccccceEEecccccchhhhhhhhccceEEecc-ccccccCceeee
Confidence 2233322 2468899985 33444 889999999999987665555556666777777 8887 5678999
Q ss_pred ec-CCcEEEEcC
Q 009022 480 GS-SRSIFIWRP 490 (546)
Q Consensus 480 gs-dg~i~vwd~ 490 (546)
.+ |+.++||+.
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 99 999999985
No 56
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.7e-29 Score=211.83 Aligned_cols=312 Identities=17% Similarity=0.198 Sum_probs=222.2
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE---EecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
..+..|++|.+.|++++|+.+| +.|||++.|++|+||++....... ......-+-.+.+.|.|+-...++++-...
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 3456899999999999999999 799999999999999987532110 000111224578899999555666666777
Q ss_pred eEEEEECCCCceeeeeecCCCC----CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 238 TVSCTDLETGLALSLMNVNPNG----WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
+|++|-+...+- .....+... .....+...+..+-...++.+|++++.|..|.+|+++ ++.+.. .......
T Consensus 156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~---idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS---IDTNQSS 230 (420)
T ss_pred EEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee---ecccccc
Confidence 899998753321 111111100 0112222346667777889999999999999999999 544432 2223335
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC------CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
-+..+.+| +|+++++++..--|++|.+--.+. .+.+...+|...|..++|+|+...+++.|.||+++|||+.-
T Consensus 231 n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 66788999 999999999999999998743222 23344448999999999999999999999999999999864
Q ss_pred CCCCCCCcceeecc---CCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcc
Q 009022 388 GNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 464 (546)
Q Consensus 388 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i 464 (546)
..-..+...++... .......++++..+|. |+.++ .+....|++|..++|+..-.+..-+...|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~---------g~~lA----~s~gs~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS---------GDSLA----VSFGSDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCC---------CcEEE----eecCCceEEEEcccCccchhHHHhhcCce
Confidence 32222211111111 1112233468888998 66665 33446799999999998888887777889
Q ss_pred cceeeecCCCcEEEEecCCcEEEEcCCCC
Q 009022 465 SPVNKLHPRDDVLASGSSRSIFIWRPKEK 493 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgsdg~i~vwd~~~~ 493 (546)
.++ +|+++|++++|++|..++|+.-..|
T Consensus 377 s~i-s~~~~g~~~atcGdr~vrv~~ntpg 404 (420)
T KOG2096|consen 377 SSI-SYSSDGKYIATCGDRYVRVIRNTPG 404 (420)
T ss_pred eeE-EecCCCcEEeeecceeeeeecCCCc
Confidence 988 9999999999999999999885444
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.6e-30 Score=242.68 Aligned_cols=308 Identities=15% Similarity=0.185 Sum_probs=239.5
Q ss_pred cccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEE
Q 009022 117 RVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVG 196 (546)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~ 196 (546)
+++.-.-++++-+.+.+.+|+|...-. +..|..|.++|..++|+|++ .++++||.|-.|+
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tl-------------------i~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIk 76 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTL-------------------IDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIK 76 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhH-------------------HhhhhccCCccceeeecCCC-CeEEecCCccEEE
Confidence 333445556666778889998775443 34577899999999999999 5999999999999
Q ss_pred EEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC
Q 009022 197 VWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP 276 (546)
Q Consensus 197 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 276 (546)
||+..+.+++.++ .+|-.-|+.+.|++. -.+|+++|.|.+|+||+..+++++..+.+|.. .|.|.+|+|
T Consensus 77 VWnYk~rrclftL-~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnH---------YVMcAqFhp 145 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTL-LGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNH---------YVMCAQFHP 145 (1202)
T ss_pred EEecccceehhhh-ccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCce---------EEEeeccCC
Confidence 9999999999998 799999999999999 99999999999999999999999999977654 499999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCC----c----------------------ceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 277 EKGVVLVADNFGFLYLVDARTNSRS----G----------------------EAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 277 ~~~~l~~~~~dg~i~i~d~~~~~~~----~----------------------~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
....+++++-|.+|++||+..-+.. . ......+|...|+-++|+| .-.+|++|
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG 224 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSG 224 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEec
Confidence 9999999999999999998642110 0 0012345666899999999 88899999
Q ss_pred eCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCce
Q 009022 331 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 410 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (546)
+.|..|++|.+...+....-...+|...|.++.|+|...++++.|.|++|+|||+...+.+...+ ..+-..+
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rendRFW 296 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------RENDRFW 296 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--------ccCCeEE
Confidence 99999999999765544433334899999999999999999999999999999998765433211 0111224
Q ss_pred eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcC
Q 009022 411 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRP 490 (546)
Q Consensus 411 ~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~ 490 (546)
.++-+|. .++++ ++.|+-+.||.+...+ ... +. +++.|+..-|..|+-+|+
T Consensus 297 ~laahP~---------lNLfA----AgHDsGm~VFkleREr-----------pa~---~v--~~n~LfYvkd~~i~~~d~ 347 (1202)
T KOG0292|consen 297 ILAAHPE---------LNLFA----AGHDSGMIVFKLERER-----------PAY---AV--NGNGLFYVKDRFIRSYDL 347 (1202)
T ss_pred EEEecCC---------cceee----eecCCceEEEEEcccC-----------ceE---EE--cCCEEEEEccceEEeeec
Confidence 5666776 55554 5667778888775322 222 22 345555555888888888
Q ss_pred CCC
Q 009022 491 KEK 493 (546)
Q Consensus 491 ~~~ 493 (546)
.+.
T Consensus 348 ~t~ 350 (1202)
T KOG0292|consen 348 RTQ 350 (1202)
T ss_pred ccc
Confidence 773
No 58
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.1e-30 Score=219.43 Aligned_cols=295 Identities=17% Similarity=0.191 Sum_probs=242.1
Q ss_pred eeccCCCccccccccccc-cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTTMSCPHRVAT-EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.+|...+......+ ..-+++++.+.+.++|++.. .....++.||...|..+++|+-
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-------------------g~LkltltGhi~~vr~vavS~r 204 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-------------------GQLKLTLTGHIETVRGVAVSKR 204 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-------------------CeEEEeecchhheeeeeeeccc
Confidence 355689996655555555 46678888999999997543 2234678999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
. .||++++.|+.|+.||+...+.+..+ .+|-+.|.|++.+|. -+.|++|+.|.++++||+++...+..+..|..
T Consensus 205 H-pYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~--- 278 (460)
T KOG0285|consen 205 H-PYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN--- 278 (460)
T ss_pred C-ceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCC---
Confidence 8 59999999999999999998888877 799999999999999 99999999999999999999999999887765
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
+|..+.+.|-...+++|+.|++|++||++.++... ....|...+.+++.+| ....||+++.| .|+-|++
T Consensus 279 ------~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~---tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 279 ------PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI---TLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKL 347 (460)
T ss_pred ------cceeEEeecCCCceEEecCCceEEEeeeccCceeE---eeecccceeeEEecCC-chhhhhccCCc-cceeccC
Confidence 48899999988999999999999999999887543 4455556899999999 88899998866 5999999
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
..+..... .-+|...|++++...++ ++++|+..|.|.+||.++|...+....++....+.....++..+|...
T Consensus 348 p~g~f~~n--lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt---- 420 (460)
T KOG0285|consen 348 PEGEFLQN--LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT---- 420 (460)
T ss_pred Cccchhhc--cccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc----
Confidence 75544222 23799999999997665 788999999999999999887666555666666666666677777766
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
|..+. +|..|.+|++|.-.
T Consensus 421 -----g~rli---t~eadKtIk~~keD 439 (460)
T KOG0285|consen 421 -----GSRLI---TGEADKTIKMYKED 439 (460)
T ss_pred -----CceEE---eccCCcceEEEecc
Confidence 55555 79999999999754
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=235.67 Aligned_cols=278 Identities=19% Similarity=0.299 Sum_probs=226.8
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 253 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (546)
+-+.|+..+ .||+|. ...|++|+..++...... ..+...|+++.|+++ +.+|++|..+|.|.|||..+.+.+..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTELC-SFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEeE-ecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccc
Confidence 346788654 577765 357999999888755555 334889999999999 999999999999999999988888877
Q ss_pred ec-CCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 254 NV-NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 254 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
.. +.. .|-+++|. +..+.+|+.++.|..+|++..+..... ...|...|+.++|++ ++.+||+|+.
T Consensus 256 ~~~h~~---------rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~-d~~~lASGgn 321 (484)
T KOG0305|consen 256 RGSHAS---------RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSP-DGNQLASGGN 321 (484)
T ss_pred cCCcCc---------eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECC-CCCeeccCCC
Confidence 66 322 58899997 788999999999999999997766552 455666899999999 9999999999
Q ss_pred CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeC--CCcEEEEECCCCCCCCCCcceeeccCCcccCCc
Q 009022 333 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQ--DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP 409 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (546)
|+.+.|||.....+ .+....|...|..++|+| ...+||+|+. |++|++||..++..+. .......+
T Consensus 322 DN~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~---------~vdtgsQV 390 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID---------SVDTGSQV 390 (484)
T ss_pred ccceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec---------ccccCCce
Confidence 99999999964433 455558999999999999 8889998864 9999999999887643 22233344
Q ss_pred eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEE
Q 009022 410 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIW 488 (546)
Q Consensus 410 ~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vw 488 (546)
..+.|++.. ..++. ..|..++.|.||+..+.+.+..+.+|. ..+..+ +++|+|..+++|+ |.++++|
T Consensus 391 csL~Wsk~~--------kEi~s--thG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~l-a~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 391 CSLIWSKKY--------KELLS--THGYSENQITLWKYPSMKLVAELLGHT-SRVLYL-ALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred eeEEEcCCC--------CEEEE--ecCCCCCcEEEEeccccceeeeecCCc-ceeEEE-EECCCCCEEEEecccCcEEec
Confidence 578999984 22222 167888999999999999999999988 557777 9999999999999 9999999
Q ss_pred cCCCC
Q 009022 489 RPKEK 493 (546)
Q Consensus 489 d~~~~ 493 (546)
++-..
T Consensus 459 ~~f~~ 463 (484)
T KOG0305|consen 459 NLFDE 463 (484)
T ss_pred cccCC
Confidence 98764
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.8e-29 Score=205.07 Aligned_cols=297 Identities=14% Similarity=0.187 Sum_probs=219.4
Q ss_pred eeccCCCcccccccccccc--CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeec-cccCCCeEEEEEc
Q 009022 103 LCKMPGHTTMSCPHRVATE--YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVI-RYHSRRVTCLEFH 179 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~ 179 (546)
...+.+|+...-.....+. ..+++++.+..+++|....... -.|...| .+|+..|++++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------~~ck~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------WTCKTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------EEEEEeccccchheeeeeeec
Confidence 3456677753333333333 3678888888888886432111 1233333 4799999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCC--ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc---eeeeee
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMN 254 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~ 254 (546)
|.| ++||+|+.|.++.||.-..+ ++...+ .+|...|.+++|+++ +++||+++.|.+|.||.+..+. +...+.
T Consensus 71 p~g-~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHG-RYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCC-cEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999 79999999999999986643 455555 799999999999999 9999999999999999998553 445555
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.|.+ .|..+.|+|...+|++++.|.+|++|.-...........+.++...|.+++|+| .+..|++++.|+
T Consensus 148 ~Htq---------DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 148 EHTQ---------DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDG 217 (312)
T ss_pred cccc---------cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCc
Confidence 5444 388899999999999999999999998774333333445667777999999999 899999999999
Q ss_pred eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEe
Q 009022 335 FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 414 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (546)
+++||-..+ .+ ...|...++.+.|. ...|++++.|+.|++|.-... ...|.-.+.......+....-++.|
T Consensus 218 tv~Iw~~~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 218 TVSIWRLYT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-PDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred ceEeeeecc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCC-CCCchHHHHHhhhcccccccceEEE
Confidence 999998752 11 12488899999997 557999999999999987632 2223223332222233334458999
Q ss_pred cCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 415 DPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
.|.. ...++ +|+.||.|++|.+.
T Consensus 289 ~p~~--------~~~L~---s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKV--------SNRLA---SGGDDGIVNFWELE 311 (312)
T ss_pred cCCC--------CCcee---ecCCCceEEEEEec
Confidence 9942 23333 78999999999874
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.7e-30 Score=215.18 Aligned_cols=288 Identities=18% Similarity=0.188 Sum_probs=228.5
Q ss_pred eeccCCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
+..+++|. .+....+.+.+..+++++.|..+-+|...-+. .+...+++|+++|+.+.|.++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccC
Confidence 45668888 56777777777899999999999999622111 123567899999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
+ +.|++++.|.+|+.||+++++..... ++|...|+.+.-+..+..++.+++.||++++||+++...+.++....
T Consensus 102 ~-s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky---- 175 (338)
T KOG0265|consen 102 G-SHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY---- 175 (338)
T ss_pred C-CEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce----
Confidence 9 68999999999999999999999888 79999999998665556788899999999999999888877664322
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.++++.|...+..+++|+-|+.|++||++...... ...+|..+|+.+..+| .+.++++-+.|.++++||+
T Consensus 176 ------qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 176 ------QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred ------eEEEEEecccccceeeccccCceeeeccccCcceE---EeecccCceeeEEecc-CCCccccccccceEEEEEe
Confidence 58999999999999999999999999998876543 5567778999999999 9999999999999999999
Q ss_pred CCCCCCce-eeec-C--C--CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEec
Q 009022 342 RRLEAGSS-LCDL-P--H--KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 415 (546)
Q Consensus 342 ~~~~~~~~-~~~~-~--~--~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (546)
+-..+.+. +..+ + | ......++|+|++..+..|+.|..+++||.....++. .... .......+.|+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly------klpG--h~gsvn~~~Fh 317 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY------KLPG--HYGSVNEVDFH 317 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE------EcCC--cceeEEEeeec
Confidence 86655443 3333 2 2 3345678999999999999999999999987655422 1111 11223478899
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEE
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDF 444 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~i 444 (546)
|.. .++. +++.|.+|++
T Consensus 318 p~e---------~iil---s~~sdk~i~l 334 (338)
T KOG0265|consen 318 PTE---------PIIL---SCSSDKTIYL 334 (338)
T ss_pred CCC---------cEEE---EeccCceeEe
Confidence 983 3333 6777887775
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.9e-30 Score=221.70 Aligned_cols=275 Identities=22% Similarity=0.243 Sum_probs=216.8
Q ss_pred cCccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCccccc-ccccccc---CCccccCCCCCCCCchh
Q 009022 63 KGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSC-PHRVATE---YGVTPASHRNAGNPVEY 138 (546)
Q Consensus 63 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 138 (546)
..+..++++||++.++|...+... ..+.||+.... +...... ..+++++.+++..+|.+
T Consensus 114 ~~~~IltgsYDg~~riWd~~Gk~~-----------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLKGKSI-----------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cCceEEEeecCCeeEEEecCCceE-----------------EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 366778999999999998665431 12245553222 2222222 34889999999999875
Q ss_pred hhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC---------------
Q 009022 139 VFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------------- 203 (546)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------- 203 (546)
.-...... +.+.-.||...|-+++..++| ..+++|+.|.+|.||+....
T Consensus 177 ~~~~~~~~---------------~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 177 NVGENKVK---------------ALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred cCchhhhh---------------HHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 54333111 112334999999999999999 68999999999999994210
Q ss_pred ---------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe
Q 009022 204 ---------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 204 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 274 (546)
+.+.....+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.+
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~k----------sl~~i~~ 308 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK----------SLNCISY 308 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCc----------ceeEeec
Confidence 112333378999999999987 6899999999999999999999888776543 4899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-
Q 009022 275 NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL- 353 (546)
Q Consensus 275 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 353 (546)
+|..++|++|+.|..|++||.+++........+.+|...|.++.|+|.+..+|++|+.|+++++||+|+.+. .+..+
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~ 386 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIA 386 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--cceeec
Confidence 999999999999999999999998765555667778889999999998889999999999999999997552 34444
Q ss_pred CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 354 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 354 ~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+|...|.++.|. ++.+|++|+.|++|+++.-
T Consensus 387 ~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 387 GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 899999999997 6778999999999999864
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3e-29 Score=244.51 Aligned_cols=294 Identities=20% Similarity=0.294 Sum_probs=223.3
Q ss_pred eccCCC--ccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 104 CKMPGH--TTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 104 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
..+.+| ..+.+..+.+.+..+++++.+....+|....... ...+.+.+|...|++++|+|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPD 214 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCC
Confidence 344444 2555656666666677777888888876522111 122456789999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCC-ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
+ +++++|+.|++|+|||+... ..+..+ .+|...|++++|+|. ++++++|+.|++|+|||+++++++..+..|..
T Consensus 215 ~-~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-- 289 (456)
T KOG0266|consen 215 G-SYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-- 289 (456)
T ss_pred C-cEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCC--
Confidence 9 79999999999999999444 566666 799999999999999 79999999999999999999999999988776
Q ss_pred CCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 261 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS-GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
.|.+++|++++++|++++.|+.|++||+.++... ...+.......++++++|+| ++.+|++++.|+.+++|
T Consensus 290 -------~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 290 -------GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLW 361 (456)
T ss_pred -------ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEE
Confidence 4999999999999999999999999999998742 11112222211699999999 99999999999999999
Q ss_pred ECCCCCCCceeeecCCCC---cEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc--CCceeEEe
Q 009022 340 DIRRLEAGSSLCDLPHKR---VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH--LTPFRAEW 414 (546)
Q Consensus 340 d~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 414 (546)
|++......... +|.. .+.+...++.+.++++|+.|+.|.+|++.++..... +.++ .....+.|
T Consensus 362 ~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~---------l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 362 DLRSGKSVGTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR---------LEGHSKAAVSDLSS 430 (456)
T ss_pred EccCCcceeeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh---------hcCCCCCceecccc
Confidence 998766544433 4444 444555677999999999999999999987654332 1222 22245677
Q ss_pred cCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 415 DPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+|. ..+++. .+...|+.|++|...
T Consensus 431 ~~~---------~~~~~s-~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPT---------ENLIAS-SSFEGDGLIRLWKYD 454 (456)
T ss_pred CCC---------cCeeee-cCcCCCceEEEecCC
Confidence 776 444441 133478999999753
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.9e-31 Score=230.76 Aligned_cols=287 Identities=19% Similarity=0.265 Sum_probs=236.1
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
..+..|.+.|..+.|-++. ..|++|+.|..|++|++...+ ....+ .+..++|+.+.|.++ +.++++++.|+.+++
T Consensus 169 ~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~-~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD-NKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC-CceEEeecCCCceee
Confidence 5677899999999999986 369999999999999998765 33344 577889999999999 999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|++...+...++.+|.. .|+++.|......+++|+.|.+|++||+........++. ...+..|+.++
T Consensus 246 Wnvd~~r~~~TLsGHtd---------kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~~ 312 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTD---------KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCSI 312 (459)
T ss_pred eeccchhhhhhhccccc---------ceeeehhhccccceeeccccchhhhhhhhhhheeccccc----cccccceEecc
Confidence 99999999999988766 489999988777799999999999999998655544322 22567777754
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
..+++|..|+.|++||.++... ....+..+.|+++..++++..|++++.|.++.+.|+++.....+.. ..
T Consensus 313 ---~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s----A~ 382 (459)
T KOG0288|consen 313 ---SDVISGHFDKKVRFWDIRSADK---TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS----AE 382 (459)
T ss_pred ---eeeeecccccceEEEeccCCce---eeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee----cc
Confidence 7889999999999999987554 3333445689999999999999999999999999999877643322 22
Q ss_pred CCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCC-cccceeeecCCCcEEEEe
Q 009022 402 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT-TISPVNKLHPRDDVLASG 480 (546)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~-~i~~v~~~s~~~~~l~sg 480 (546)
.+.....-.++.|+|+ +.|++ .|+.||.|+||++.++++...+...+.. .|+++ +|+|.|..|+++
T Consensus 383 g~k~asDwtrvvfSpd---------~~Yva---AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~-~W~~sG~~Llsa 449 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPD---------GSYVA---AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL-SWNPSGSGLLSA 449 (459)
T ss_pred ccccccccceeEECCC---------Cceee---eccCCCcEEEEEccCceEEEEeccCCCCcceEEE-EEcCCCchhhcc
Confidence 2222222347889998 89999 9999999999999999998888766544 68888 999999999999
Q ss_pred c-CCcEEEEc
Q 009022 481 S-SRSIFIWR 489 (546)
Q Consensus 481 s-dg~i~vwd 489 (546)
+ ++.+.+|.
T Consensus 450 dk~~~v~lW~ 459 (459)
T KOG0288|consen 450 DKQKAVTLWT 459 (459)
T ss_pred cCCcceEecC
Confidence 9 99999994
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=223.36 Aligned_cols=290 Identities=14% Similarity=0.173 Sum_probs=219.8
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE----------------Eec-ccCCCceEEEEEecC
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI----------------VYG-NIHSCIVNNIRFNPT 225 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------~~~-~~~~~~v~~~~~~~~ 225 (546)
+..+..|.-+|+|++++|++ .++++++.+++|.-|++.++.... ... ..|...+.+++.+|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 45677899999999999999 789999999999999998765320 011 268889999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 226 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
+++|++|+.|..|.||+.++.+.+..+..+.. .|.+++|-.....+++++.|+.|.+|++.....+.
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~---------~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve--- 280 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG---------AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE--- 280 (479)
T ss_pred -CcEEEecCCCceEEEecCcccchhhccccccc---------ceeeeeeecCccceeeeecCCceEEEehhHhHHHH---
Confidence 99999999999999999999999988776655 59999999999999999999999999998866554
Q ss_pred EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 306 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 306 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
.+++|...|.+|.... .++.+-+|+.|+++++|++. ...+.+ ..++.+.+-|++|- +...|++||.+|.|.+|++
T Consensus 281 tlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~--eesqli-frg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP--EESQLI-FRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHhCCccceeeechhc-ccceEEeccccceeEEEecc--ccceee-eeCCCCCeeeEEEe-cccceeeccCCceEEEeee
Confidence 4467777899998887 77777788899999999994 222333 34788899999997 5678999999999999999
Q ss_pred CCCCCCCCCcceeeccCCcccC-------CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh----hhH
Q 009022 386 IFGNLDSPSREIVHSHDFNRHL-------TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----LVA 454 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~----~~~ 454 (546)
...+.+...+. .|...... =...++..|. ..+++ +|+.+|+|++|-+..|- ++.
T Consensus 356 ~KKkplf~~~~---AHgv~~~~~~~~~~~Witsla~i~~---------sdL~a---sGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 356 LKKKPLFTSRL---AHGVIPELDPVNGNFWITSLAVIPG---------SDLLA---SGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred cccCceeEeec---cccccCCccccccccceeeeEeccc---------CceEE---ecCCCCceEEEEecCCccccceee
Confidence 87765432111 11111110 0012222232 45666 89999999999998882 333
Q ss_pred hhcCCCCCcccceeeecCCCcEEEEec--CCcEEEEc
Q 009022 455 EVMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWR 489 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd 489 (546)
.+. -.+-|+.+ +|+++|..|++|- ...+--|-
T Consensus 421 ~ls--~~GfVNsl-~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 421 SLS--LVGFVNSL-AFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ecc--cccEEEEE-EEccCCCEEEEecccccccceee
Confidence 332 23566677 8999999776654 55554444
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=221.98 Aligned_cols=292 Identities=17% Similarity=0.198 Sum_probs=225.9
Q ss_pred eccCCCcccc-ccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCC
Q 009022 104 CKMPGHTTMS-CPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTN 182 (546)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 182 (546)
..+..|+..+ ...+.+.+..+++++.+.+..+|...+...+. ..+++.+|..+|..+.||||.
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k----------------l~~tlvgh~~~V~yi~wSPDd 281 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK----------------LKKTLVGHSQPVSYIMWSPDD 281 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee----------------eeeeeecccCceEEEEECCCC
Confidence 3456777443 34455567889999999999999866554422 247899999999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 183 NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 183 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
++|++|+.+..+.+||+.++.....+..+|...+.+++|.|+ +..+++|+.|+.+..||++.. .+...+....
T Consensus 282 -ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~---- 354 (519)
T KOG0293|consen 282 -RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRD---- 354 (519)
T ss_pred -CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcc-hhhccccccc----
Confidence 789999999999999999999988887777889999999999 999999999999999999743 3333322211
Q ss_pred CCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 263 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
..|.++++++||+++++.+.|..|++|+..+...... .....+|++++.+. ++.++++.-.+..|++||+.
T Consensus 355 ----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l----ise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 355 ----PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL----ISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ----ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc----ccccCceeEEEEcC-CCcEEEEEcccCeeEEeecc
Confidence 1599999999999999999999999999876443321 11223899999999 99999999999999999997
Q ss_pred CCCCCceeeecCCCC--cEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCC
Q 009022 343 RLEAGSSLCDLPHKR--VVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKD 418 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~--~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ 418 (546)
.... ..+..+|.. .|..-||-- +..++++||.|+.|+||+..+|+++.. +.+|. ..-+++|+|.+
T Consensus 426 e~~l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~---------LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 426 ENKL--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV---------LSGHSKTVNCVSWNPAD 494 (519)
T ss_pred hhhH--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe---------ecCCcceeeEEecCCCC
Confidence 4333 223335543 355556755 668999999999999999999987443 22222 23478999986
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
..++| +++.||+|+||-...
T Consensus 495 --------p~m~A---SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 --------PEMFA---SASDDGTIRIWGPSD 514 (519)
T ss_pred --------HHHhh---ccCCCCeEEEecCCc
Confidence 34455 899999999998753
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-28 Score=212.73 Aligned_cols=289 Identities=16% Similarity=0.245 Sum_probs=220.9
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC--CCEEEEEeCCCeEEEEECC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~ 245 (546)
.|.+.|.++... + +.+++|+.||.++|||... +....+ .+|.++|.+++|.-.+ ...|++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~-~~IltgsYDg~~riWd~~G-k~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--S-KWILTGSYDGTSRIWDLKG-KSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--C-ceEEEeecCCeeEEEecCC-ceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 399999999887 3 5899999999999999865 444444 6899999999886441 3469999999999999998
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC----------------------CCCcc
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN----------------------SRSGE 303 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~ 303 (546)
.+........... .+...|-+++..+++..+++|+.|.+|.+|+..+. .....
T Consensus 178 ~~~~~~~~~~~~~-----GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 178 VGENKVKALKVCR-----GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred CchhhhhHHhHhc-----ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 7765433222111 12235999999999999999999999999993221 00112
Q ss_pred eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 304 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 304 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++... ..+.....++++..+|...+|++|+.|..|++|
T Consensus 253 ~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~---~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLK---STLTTNKSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred eEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccce---eeeecCcceeEeecccccceeeecCCCCceeec
Confidence 334667888999999996 678999999999999999765553 333456779999999999999999999999999
Q ss_pred ECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh-hhHhhcCCCC
Q 009022 384 DSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNI 461 (546)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~~~ 461 (546)
|.+++.-. +....+.+|.. .-.+.|+|... ..++ +|+.|+++++||+++-+ +++.+.+|.
T Consensus 328 DPR~~~gs------~v~~s~~gH~nwVssvkwsp~~~--------~~~~---S~S~D~t~klWDvRS~k~plydI~~h~- 389 (423)
T KOG0313|consen 328 DPRTGDGS------VVSQSLIGHKNWVSSVKWSPTNE--------FQLV---SGSYDNTVKLWDVRSTKAPLYDIAGHN- 389 (423)
T ss_pred CCCCCCCc------eeEEeeecchhhhhheecCCCCc--------eEEE---EEecCCeEEEEEeccCCCcceeeccCC-
Confidence 99987421 11222223322 23688999842 2222 78999999999999877 899998886
Q ss_pred CcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 462 TTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 462 ~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
..+.++ .|. ++.+|++|+ |.+|+|+.-.
T Consensus 390 DKvl~v-dW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 390 DKVLSV-DWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEE-ecc-CCceEEeccCcceEEEeccc
Confidence 777777 775 577899999 9999999754
No 68
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-28 Score=225.40 Aligned_cols=254 Identities=17% Similarity=0.229 Sum_probs=209.9
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
..++..|.++.|+|. ...++++-.+|.|.|||.++...+..+..... +|.+..|-+..+++++|+.|..|
T Consensus 10 ~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~---------PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEV---------PVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred hccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeeccc---------chhhheeeeccceEEEecCCceE
Confidence 348889999999999 89999999999999999999999988877654 48888899999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SG 368 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~ 368 (546)
++|+..+...+. .++.|...|.+++.+| ...++++++.|-+|++||.... ..+...+ +|...|++++|.| +.
T Consensus 80 rVfnynt~ekV~---~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 80 RVFNYNTGEKVK---TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EEEecccceeeE---EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCc
Confidence 999999976544 6788888999999999 7889999999999999999742 2344444 8999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
+.++++|.|++|+||.+....... .+.+|.. .-++.|-|.+. -.|+. +|+.|.+|+|||.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nf---------Tl~gHekGVN~Vdyy~~gd-------kpylI---sgaDD~tiKvWDy 214 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNF---------TLEGHEKGVNCVDYYTGGD-------KPYLI---SGADDLTIKVWDY 214 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCce---------eeeccccCcceEEeccCCC-------cceEE---ecCCCceEEEeec
Confidence 999999999999999986544311 1222222 23566655421 23555 8999999999999
Q ss_pred CchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeec
Q 009022 448 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~ 501 (546)
++.++++++.||. ..+..+ .|+|.-.+++||| ||+++||+..+-++..++.-
T Consensus 215 Qtk~CV~TLeGHt-~Nvs~v-~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 215 QTKSCVQTLEGHT-NNVSFV-FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred chHHHHHHhhccc-ccceEE-EecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 9999999999987 667777 8999999999999 99999999887665555543
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-29 Score=204.32 Aligned_cols=247 Identities=19% Similarity=0.245 Sum_probs=199.9
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
-.+.+..++|+++....+++++.||+++|||+.....+....+.|...|.++.|++.....+++++.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35689999999998889999999999999997765555555588999999999999878889999999999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.+.++..+.. .|+...|+| .++++++++.|+.+++||++... +.+.+..|...|.++.|+..+.+.|
T Consensus 139 Sv~Tf~gh~~---------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---k~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 SVQTFNGHNS---------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---KFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCcc---------EEEEEecCCCCCCeEEEccCCceEEEEEecCCC---ceeEEEeccceeEeecccccCCcEE
Confidence 9999877654 599999999 57899999999999999998753 3334556666899999999889999
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
+||+.|+.|++||+++.+.. .....+|.-.|..+.|+| ...+|++++.|-+++|||...+.... .....|
T Consensus 207 ~Tg~vd~~vr~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--------e~~~~H 277 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--------ETVDHH 277 (311)
T ss_pred EecCCCceEEEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--------hhhhcc
Confidence 99999999999999987653 233348999999999999 67789999999999999987544211 111122
Q ss_pred CC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 407 LT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 407 ~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
.. ...+.|++.. +.++| +.+-|..++||+.
T Consensus 278 tEFv~g~Dws~~~--------~~~vA---s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 TEFVCGLDWSLFD--------PGQVA---STGWDELLYVWNP 308 (311)
T ss_pred ceEEecccccccc--------Cceee---ecccccceeeecc
Confidence 21 1346677763 45566 7889999999984
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.8e-27 Score=249.94 Aligned_cols=302 Identities=13% Similarity=0.140 Sum_probs=218.6
Q ss_pred CCCcccccccccc-ccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcE
Q 009022 107 PGHTTMSCPHRVA-TEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHI 185 (546)
Q Consensus 107 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 185 (546)
..|...++...+. .+..+++++.+..+++|+....... ... . ......+. +...|.+++|+|....+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-~~~------~----~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-GRD------I----HYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-ccc------c----ccceEEec-ccCceeeEEeccCCCCE
Confidence 3466555544444 4466788889999999974321000 000 0 00112233 34689999999864478
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
|++++.||+|+|||+.++.....+ .+|...|++++|+|.++.+|++|+.||.|++||+.++..+..+..+.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~-------- 618 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA-------- 618 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC--------
Confidence 999999999999999988777766 68999999999997548899999999999999999988877665321
Q ss_pred ccceEEEEec-CCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 266 WRMLYGMDIN-PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 266 ~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.+.++.|+ +++.+|++|+.||.|++||++...... .....|...|.++.|. ++.+|++++.|++|++||++..
T Consensus 619 --~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~--~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 619 --NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL--CTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred --CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc--eEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 48889995 579999999999999999998765322 2344566789999996 5788999999999999999753
Q ss_pred CC---Cceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC----cceeeccCCcc-cCCceeEEec
Q 009022 345 EA---GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS----REIVHSHDFNR-HLTPFRAEWD 415 (546)
Q Consensus 345 ~~---~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~ 415 (546)
.. ...+..+ +|...+.+++|+|++.+|++|+.|+.|++|+.......... ........... ......++|+
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 21 1233333 78999999999999999999999999999998654321100 00000000111 1223578899
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
|+ |.+++ +|+.+|.|+||++
T Consensus 773 ~~---------~~~lv---a~~~dG~I~i~~~ 792 (793)
T PLN00181 773 GQ---------SSTLV---AANSTGNIKILEM 792 (793)
T ss_pred CC---------CCeEE---EecCCCcEEEEec
Confidence 97 66666 7889999999986
No 71
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.1e-27 Score=230.25 Aligned_cols=211 Identities=16% Similarity=0.302 Sum_probs=167.1
Q ss_pred eccccCCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCc-------eeEEecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 165 VIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
.+.+|.+.|++++|+| ++ ++|++|+.|++|+||++.... ....+ .+|...|.+++|+|..+++|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 4789999999999999 56 789999999999999997642 23334 78999999999999855799999999
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC-cEE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KVV 315 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~ 315 (546)
++|+|||+.+++.+..+..+.. .|.+++|+|++.+|++++.|+.|++||+++++... ....|.. .+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~---------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~ 215 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSD---------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQ 215 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCC---------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcce
Confidence 9999999999988777655443 49999999999999999999999999999876543 2233332 345
Q ss_pred EEEECCCCCCEEEEEe----CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCC
Q 009022 316 GLHCNPIQPELLLSCG----NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNL 390 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~ 390 (546)
.+.|.+ +...|++++ .|+.|++||+++...........+...+....|++++++|++++ .|+.|++||+.++++
T Consensus 216 ~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 216 RCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 678888 666666544 47899999998655422222223445666778999999999887 599999999988764
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.9e-28 Score=233.62 Aligned_cols=285 Identities=18% Similarity=0.242 Sum_probs=227.6
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.|...++|..|. + .++++++.+++|++|+..++..+.....+|.+.|.+++|... +.+|++|+.|.++++||+.+|
T Consensus 206 ~~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee-c--CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCC
Confidence 367789999998 3 369999999999999999998888845899999999999875 889999999999999999999
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.+...+..+.. .+.++.. ...++++|+.|..|++|++.++..+. ...+|..+|+++..+ +.++
T Consensus 282 ~C~~~l~gh~s---------tv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 282 ECTHSLQGHTS---------SVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD---EPLL 344 (537)
T ss_pred cEEEEecCCCc---------eEEEEEc--cCceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec---CCEE
Confidence 99999987654 3666554 45678888999999999999876554 223377899999995 6899
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-CCCCCCcceeeccCCcc
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG-NLDSPSREIVHSHDFNR 405 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~ 405 (546)
++|+.|++|++||+.+.+. +..+ +|...|.++.+.+. .++++|+.|++|++||+.+. +++.. +.+
T Consensus 345 vsgs~d~~v~VW~~~~~~c---l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t---------l~~ 411 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKC---LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT---------LQG 411 (537)
T ss_pred EEEecCceEEEEEhhhcee---eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh---------hcC
Confidence 9999999999999986554 4444 79999999988655 89999999999999999987 54321 111
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCc
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 484 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~ 484 (546)
+.. ....+...++++. +++.|++|++||..+++++..+.+++...+..+ ++. ...+++++ ||+
T Consensus 412 h~~----------~v~~l~~~~~~Lv---s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l-~~~--~~~il~s~~~~~ 475 (537)
T KOG0274|consen 412 HTS----------LVSSLLLRDNFLV---SSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL-ALG--KEEILCSSDDGS 475 (537)
T ss_pred Ccc----------cccccccccceeE---eccccccEEEeecccCceeeeeccCCcccEEEe-ecC--cceEEEEecCCe
Confidence 111 1122333466666 899999999999999999999988654666655 333 34566656 999
Q ss_pred EEEEcCCCCCccceeecc
Q 009022 485 IFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 485 i~vwd~~~~~~~~~~~~~ 502 (546)
+++||+.+++..+.+-.+
T Consensus 476 ~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 476 VKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEEEecccCchhhhhhhc
Confidence 999999999998877333
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=208.60 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=223.4
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+.++...|.. ..+++|+.|..+.++|...++.+..+ .+|...|+.+.|+|+ ...+++++.|-.|++|........
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCc
Confidence 578899999885 57999999999999999998888888 899999999999999 999999999999999999877766
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.....+.. +|+.+..+|.|.||++++.++...+.|++++........ ......+++.+|+| +|.+|.+|
T Consensus 297 ~~~~~h~~---------~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHp-DgLifgtg 365 (506)
T KOG0289|consen 297 TSSRPHEE---------PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHP-DGLIFGTG 365 (506)
T ss_pred cccccccc---------cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcC-CceEEecc
Confidence 55555544 599999999999999999999999999999876543211 12334699999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCce
Q 009022 331 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 410 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (546)
..||.|+|||+..... .-..-+|.++|..+.|+.+|-+|++++.|+.|++||++.-+.... +.... .....
T Consensus 366 t~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt----~~l~~---~~~v~ 436 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT----IQLDE---KKEVN 436 (506)
T ss_pred CCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce----eeccc---cccce
Confidence 9999999999976543 222237999999999999999999999999999999986553221 11111 11223
Q ss_pred eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC--CchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEE
Q 009022 411 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI--TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFI 487 (546)
Q Consensus 411 ~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~--~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~v 487 (546)
.+.|.+. |.|++ .++.+=.|++++- ..++++..+..|. +...++ .|....++|+++| |..++|
T Consensus 437 s~~fD~S---------Gt~L~---~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v-~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 437 SLSFDQS---------GTYLG---IAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGV-RFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eEEEcCC---------CCeEE---eecceeEEEEEecccccceeeehhhhcc-ccccee-eecccceEEeeccchhheEE
Confidence 5666665 88887 4555555555553 2567777776664 445555 8999999999999 999888
Q ss_pred EcC
Q 009022 488 WRP 490 (546)
Q Consensus 488 wd~ 490 (546)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 754
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.5e-28 Score=229.41 Aligned_cols=271 Identities=18% Similarity=0.237 Sum_probs=206.5
Q ss_pred eccC-CCcccccc-ccccccCCccccCCCCCCCCchhhhhcc------c------------------------CCCCCCC
Q 009022 104 CKMP-GHTTMSCP-HRVATEYGVTPASHRNAGNPVEYVFERQ------L------------------------RPNMTYM 151 (546)
Q Consensus 104 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------------~~~~~~~ 151 (546)
+.+. .|...+.. .+...+..+++++.|..+++|..+.... . .......
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3344 77744444 4444568899999999999998765000 0 0000000
Q ss_pred -----CCCccCCC------ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEE
Q 009022 152 -----KPAHVIPD------QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNI 220 (546)
Q Consensus 152 -----~~~~~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 220 (546)
.+...+|. ...+..|.||.+.|..|.||.++ +|++++.|.+||||++....++..+. |..-|+||
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcV 415 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCV 415 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe--cCCeeEEE
Confidence 00011111 33556899999999999999876 89999999999999999999999986 99999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009022 221 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 300 (546)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 300 (546)
+|+|.+.++|++|+.||.|+||++...+...-..++. .|++++|.|+|++.++|+.+|.+++|+....+.
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~----------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD----------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhh----------hheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 9999989999999999999999999887776655542 499999999999999999999999999987665
Q ss_pred CcceEEeec-----CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 301 SGEAILIHR-----KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 301 ~~~~~~~~~-----~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
......... ....|++++|.|.+...+++.+.|..|+|||.+.......++.+.....-....|+.+|++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 433221111 123799999999777778888999999999997656555554433333345678999999999999
Q ss_pred CCCcEEEEECCCC
Q 009022 376 QDNRLRIWDSIFG 388 (546)
Q Consensus 376 ~dg~i~vwd~~~~ 388 (546)
.|..|++|++...
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
No 75
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.1e-27 Score=200.81 Aligned_cols=295 Identities=19% Similarity=0.314 Sum_probs=222.2
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce----------eE----EecccCCCceEEEEEecCCCCEEE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----------KI----VYGNIHSCIVNNIRFNPTNDGTVY 231 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~----~~~~~~~~~v~~~~~~~~~~~~l~ 231 (546)
...|.+.|++|...+...+|+++|+.||.|.|||++.... .. ....+|.-.|..+.|.|-+...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 4569999999999997669999999999999999976430 11 112468889999999998788999
Q ss_pred EEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeCCCcEEEEeCCCCCCCcceEEee
Q 009022 232 AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGEAILIH 308 (546)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 308 (546)
+++.|.++++||..+-+....++... .|++-+++|- ..++|+|..+-.|++-|+..+.... .+.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~----------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~Ls 185 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEG----------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLS 185 (397)
T ss_pred cccccceEEEeecccceeeEEeecCc----------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eec
Confidence 99999999999999998888877654 3777778773 4578888999999999999987765 446
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------------CCCceee-ecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL------------EAGSSLC-DLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
+|...|.++.|+|...-.|++|+.||.|++||++.. +..+.+. ...|.+.|+.++|+.++.++++++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 677799999999966778899999999999999853 1112222 236889999999999999999999
Q ss_pred CCCcEEEEECCCCCCCC-CCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH
Q 009022 376 QDNRLRIWDSIFGNLDS-PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 454 (546)
Q Consensus 376 ~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~ 454 (546)
.|..+++|+..+|+-.. +..++...... +. .+.+. +.+ .+.++.. -.++.+.++++-.|..+.
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~-~~~~~-~~~--------s~vfv~~----p~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTT--SF-AVHIQ-SMD--------SDVFVLF----PNDGSLALLNLLEGSFVR 329 (397)
T ss_pred CccceEEeecccCcccccccccccccccc--cc-eEEEe-ecc--------cceEEEE----ecCCeEEEEEccCceEEE
Confidence 99999999998886422 11111111110 00 00111 111 1222211 123678899998998888
Q ss_pred hhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 455 EVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
.+..| ...+.+. ++.|+-+.+.+|+ |+.|..|-+.
T Consensus 330 ~l~~h-~k~i~c~-~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 330 RLSTH-LKRINCA-AYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eeecc-cceeeEE-eecCchhhhhccccCCcccccccc
Confidence 88888 4566655 7999999999999 9999999873
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=213.33 Aligned_cols=284 Identities=18% Similarity=0.242 Sum_probs=222.2
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
..+.|.+|+|+|..+.-+|+.+. -.+.||+..+......+ ......|.++.|..+ |.+|++|...|.|++||+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHH
Confidence 34589999999977655655553 37999998887766655 457788999999999 9999999999999999977766
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.++.+..|.. ++..+.|+|.+ ..+++|+.|+.+++||+.+... .....+|...|.|.+|+|.++.++
T Consensus 102 iLR~~~ah~a---------pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 102 ILRQLYAHQA---------PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHHHHhhccC---------ceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEE
Confidence 6666665554 58889999965 5667788888999999998763 335667788999999999888899
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
++|+.||.|++||++... ..+..+.|..+|.++.+-|.|.+|++++ .+.|+|||+.+|..... ...+++-
T Consensus 170 vtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~-------~~~~H~K 239 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT-------SMFNHNK 239 (487)
T ss_pred EecCCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh-------hhhcccc
Confidence 999999999999998754 4566678999999999999999999986 45799999986654211 1112223
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEE
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 486 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~ 486 (546)
+..++.+..+ +..+. +|+-|+.|+|||+.+.+.+..+.-+ +.+.++ +.+|+++.++.|. +|.+.
T Consensus 240 tVTcL~l~s~---------~~rLl---S~sLD~~VKVfd~t~~Kvv~s~~~~--~pvLsi-avs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 240 TVTCLRLASD---------STRLL---SGSLDRHVKVFDTTNYKVVHSWKYP--GPVLSI-AVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred eEEEEEeecC---------CceEe---ecccccceEEEEccceEEEEeeecc--cceeeE-EecCCCceEEEecccceee
Confidence 3345555544 34444 7999999999999888888777554 678888 9999999999999 89887
Q ss_pred EEcCCC
Q 009022 487 IWRPKE 492 (546)
Q Consensus 487 vwd~~~ 492 (546)
+=+...
T Consensus 305 ~rr~~~ 310 (487)
T KOG0310|consen 305 IRRREV 310 (487)
T ss_pred eehhhc
Confidence 775443
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.4e-26 Score=215.62 Aligned_cols=260 Identities=21% Similarity=0.317 Sum_probs=207.0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|..+|.+++|+|+ +.+|++++.+|.|++|++.++.....+..+.. .+..+.|+++++++++++.+|.|
T Consensus 6 ~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTG---------PVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc---------ceeEEEECCCCCEEEEEcCCCeE
Confidence 479999999999999 89999999999999999998876666554433 47899999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
++|++....... ....+...+.++.|+| ++.++++++.++.|++||+++.+....+ ..|...|.++.|+|++.+
T Consensus 76 ~i~~~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 76 RLWDLETGECVR---TLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTL--RGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred EEEEcCcccceE---EEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEe--ccCCCcEEEEEEcCcCCE
Confidence 999998764433 3334555899999999 7888888888999999999754432222 258889999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
+++++.++.|++||+.+++...... ........+.|+|+ +..++ +++.++.|++||+.++
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~---------~~~l~---~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLT--------GHTGEVNSVAFSPD---------GEKLL---SSSSDGTIKLWDLSTG 209 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEe--------cCccccceEEECCC---------cCEEE---EecCCCcEEEEECCCC
Confidence 9998889999999998766432211 11113357888887 54444 4556999999999998
Q ss_pred hhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 451 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
+.+..+..+. ..+.++ +|+|++.++++++ ||.|++|++.+++.+..+..|...+.+
T Consensus 210 ~~~~~~~~~~-~~i~~~-~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 210 KCLGTLRGHE-NGVNSV-AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred ceecchhhcC-CceEEE-EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE
Confidence 8888876654 567777 8999999999999 999999999999888888877654433
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=4.5e-27 Score=209.08 Aligned_cols=270 Identities=20% Similarity=0.302 Sum_probs=200.4
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE---------EecccCCCceEEEEEecCCCCEEE
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---------VYGNIHSCIVNNIRFNPTNDGTVY 231 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~ 231 (546)
..+...-.|.+.|+.+.+-|+.+.++|+++..+.|.|||..+..... ....+|...-.+|+|++.....|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 34444556999999999999998999999999999999986532211 123688887889999999888999
Q ss_pred EEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 232 AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
+++.|+.|++||+...............+.++ ...|..++|++ +..+|++++.|+.+.|||+|+. ..........|
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah 271 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAH 271 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecC--CcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCccccccc
Confidence 99999999999998654421111111111111 22589999998 4678888999999999999974 22223355677
Q ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 009022 311 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.+.|.|++|+|.++.+||+|+.|++|++||+|+... .+..+ +|...|.+|.|+| ....||+++.|+.+.|||+..-
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 789999999999999999999999999999998665 44444 8999999999999 6778999999999999999743
Q ss_pred CCCCC-------CcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 389 NLDSP-------SREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 389 ~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
...++ ..++++.| .+|. ......|+|..+ ..++ +.+.|+.++||.+.
T Consensus 350 g~eq~~eda~dgppEllF~H--gGH~~kV~DfsWnp~eP--------W~I~---SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIH--GGHTAKVSDFSWNPNEP--------WTIA---SVAEDNILQIWQMA 404 (422)
T ss_pred ccccChhhhccCCcceeEEe--cCcccccccccCCCCCC--------eEEE---EecCCceEEEeecc
Confidence 22111 11122222 2222 234688999853 3333 67889999999885
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-26 Score=194.69 Aligned_cols=279 Identities=12% Similarity=0.133 Sum_probs=209.4
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
-.+.|.+|+|||....+|++|+.|++||+|+++. +.........|.++|.+++|+.+ +..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEEEccCC
Confidence 4568999999996557888999999999999987 34444555679999999999999 899999999999999999999
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCC--EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+... +..|.. +|..+.|-+... .|++|+.|.+|++||.+....+..+ .-...++++..- ..
T Consensus 105 Q~~~-v~~Hd~---------pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~LPeRvYa~Dv~---~p 167 (347)
T KOG0647|consen 105 QVSQ-VAAHDA---------PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL----QLPERVYAADVL---YP 167 (347)
T ss_pred Ceee-eeeccc---------ceeEEEEecCCCcceeEecccccceeecccCCCCeeeee----eccceeeehhcc---Cc
Confidence 6544 444433 588888877655 8999999999999999987665432 223367777664 36
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC--
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF-- 403 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-- 403 (546)
+++++..++.|.+|+++.+........-+..-.+.||+..++....+.|+..|.+-|..+..+.... .-....|.-
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~--nFtFkCHR~~~ 245 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD--NFTFKCHRSTN 245 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC--ceeEEEeccCC
Confidence 7888888999999999765432222112445668999999988888999999999999998764311 112222221
Q ss_pred --cc-cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEe
Q 009022 404 --NR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 480 (546)
Q Consensus 404 --~~-~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sg 480 (546)
.. ....-.++|+|.. |.++ +.+.||++.+||-.....+.+...+. ..|.+. +|+.+|.++|.+
T Consensus 246 ~~~~~VYaVNsi~FhP~h--------gtlv----TaGsDGtf~FWDkdar~kLk~s~~~~-qpItcc-~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVH--------GTLV----TAGSDGTFSFWDKDARTKLKTSETHP-QPITCC-SFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeeccc--------ceEE----EecCCceEEEecchhhhhhhccCcCC-Ccccee-EecCCCCEEEEE
Confidence 11 1112357888863 3333 57889999999999888888776665 677776 899999999875
Q ss_pred c
Q 009022 481 S 481 (546)
Q Consensus 481 s 481 (546)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 4
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.7e-26 Score=193.29 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=211.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
.+.|++|.|+|.+ ..|+.+++||++++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC--CceEEEeccCceEEEEEecCCcc
Confidence 5689999999988 467777799999999999886666654 999999999987 57899999999999999998876
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
...... . .++.||.+++....+++|+.|+.|++||.+....... ...+..|.++... ++.|++
T Consensus 88 ~~igth-~---------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~----~d~~kkVy~~~v~---g~~LvV 150 (323)
T KOG1036|consen 88 DQIGTH-D---------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT----FDQGKKVYCMDVS---GNRLVV 150 (323)
T ss_pred eeeccC-C---------CceEEEEeeccCCeEEEcccCccEEEEeccccccccc----cccCceEEEEecc---CCEEEE
Confidence 544322 1 2599999999999999999999999999997443322 2223378888874 588999
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc---
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH--- 406 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--- 406 (546)
|+.+..|.+||+|+.........-...-.+.||++.|++.=++++|.+|.|.+=.+.........+.....|.....
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 99999999999998776554444456678999999998888999999999988766654222221222222221111
Q ss_pred --CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 407 --LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 407 --~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
...-.++|+|. -..++ +|+.||.|.+||+.+.+.+..+..-. ..|..+ +|+.+|..||.|+
T Consensus 231 ~~yPVNai~Fhp~---------~~tfa---TgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~sl-sfs~dG~~LAia~ 293 (323)
T KOG1036|consen 231 IIYPVNAIAFHPI---------HGTFA---TGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSL-SFSMDGSLLAIAS 293 (323)
T ss_pred EEEEeceeEeccc---------cceEE---ecCCCceEEEccCcchhhhhhccCCC-CceEEE-EeccCCCeEEEEe
Confidence 11134677776 33344 89999999999999999999886653 667777 9999999999986
No 81
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.3e-26 Score=221.84 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=160.0
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce-------eEEecccCCCceEEEEEecCCCCEEEEEe
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTNDGTVYAAS 234 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 234 (546)
.+..+.+|.+.|++++|+|+.+.+||+|+.|++|+||++.+... ......+|...|.+++|+|++..+|++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 45678999999999999997447999999999999999975421 11123679999999999998344567999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 235 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.|++|++||+.+++....+..+ ..|.+++|+|+|.+|++++.|+.|++||++++.... ....|.+.+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~----------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~ 212 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP----------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGK 212 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC----------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCc
Confidence 9999999999998876555321 149999999999999999999999999999876543 233443333
Q ss_pred EE-----EEECCCCCCEEEEEeCCC----eEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 009022 315 VG-----LHCNPIQPELLLSCGNDH----FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 384 (546)
Q Consensus 315 ~~-----~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd 384 (546)
.. ..|++ ++.+|++++.++ .|+|||+++.........+ .+.+.+......+++.++++|+.|+.|++|+
T Consensus 213 ~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 213 NTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred eeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 22 23457 778888877664 7999999864332222122 2334444444445789999999999999999
Q ss_pred CCCCC
Q 009022 385 SIFGN 389 (546)
Q Consensus 385 ~~~~~ 389 (546)
+..+.
T Consensus 292 ~~~~~ 296 (568)
T PTZ00420 292 HSLGS 296 (568)
T ss_pred ccCCc
Confidence 97654
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=209.27 Aligned_cols=265 Identities=14% Similarity=0.172 Sum_probs=204.8
Q ss_pred eeccCCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCC--CCCCccCCCceeeeeccccCCCeEEEEEc
Q 009022 103 LCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTY--MKPAHVIPDQVNCAVIRYHSRRVTCLEFH 179 (546)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 179 (546)
+.....|. ++.+....+.....++++.+.++.-|+...........+. +......|..... ++|...|.+++.+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r---~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR---KGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc---ccccceeEEEEEc
Confidence 34455666 4444444445577888888888888876554433222111 1111222222221 4899999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCC
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG 259 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 259 (546)
++| +|||+|+.|..|.||+..+.+.+..+ .+|.+.|.+++|-.. ...|++++.|++|++|+++....+.++..|+.
T Consensus 212 ~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd- 287 (479)
T KOG0299|consen 212 SDG-KYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQD- 287 (479)
T ss_pred CCC-cEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCcc-
Confidence 999 89999999999999999999988887 799999999999887 88999999999999999998888888776665
Q ss_pred CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 260 WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
.|.+|....-.+.+-+|+.|+++++|++....+ +.+..+.+.+-|++|- +...|++|+.+|.|.+|
T Consensus 288 --------~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 288 --------GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALW 353 (479)
T ss_pred --------ceeeechhcccceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEe--cccceeeccCCceEEEe
Confidence 488888888889999999999999999954322 2445556689999998 67889999999999999
Q ss_pred ECCCCCCCceeeec----------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 340 DIRRLEAGSSLCDL----------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 340 d~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
++.+.++....... .+..+|++++..|...++++|+.+|+|++|-+..+
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99876553222111 12348999999999999999999999999999876
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5e-27 Score=230.31 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=221.9
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCC------------ceeEEecccCCCceEEEEEecCCCCEEEEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKV------------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~--~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
.+...|.++..+|+| ..+|||+ .|+.++||+...- +.+... ..|.+.|+|+.|+|+ +.+||+|
T Consensus 11 H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d-G~~lAsG 87 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD-GSYLASG 87 (942)
T ss_pred cCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC-CCeEeec
Confidence 345679999999999 6899999 8999999987531 122223 569999999999999 9999999
Q ss_pred eCCCeEEEEECCCC------------------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009022 234 SSDGTVSCTDLETG------------------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 295 (546)
Q Consensus 234 ~~dg~i~iwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 295 (546)
+.|+.|.||..... +....+..|. ..|..++|+|++.+|++++.|+.|.+|+.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---------~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---------SDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---------CccceeccCCCccEEEEecccceEEEEcc
Confidence 99999999998731 1222333332 25899999999999999999999999999
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee----cCCCCcEEEEEEeCCCCEE
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l 371 (546)
++.... ..+..|.+.|..+.|.| -|++||+-+.|++|+||.+......+.+.. .+....+..+.|+|+|.+|
T Consensus 159 ~tF~~~---~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 159 KTFELL---KVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccceee---eeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 998433 24566777999999999 999999999999999999765333332221 1345678899999999999
Q ss_pred EEEeC----CCcEEEEECCCCCCCCCCcceeeccCCcccCCc-eeEEecCCCCCCcee----EEe-eeeeecCCCCcCcc
Q 009022 372 LTTSQ----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLA----VIG-RYISENYNGAALHP 441 (546)
Q Consensus 372 ~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~----~~g-~~~~~~~~g~~d~~ 441 (546)
++... -.++.|.+-.+.+. ...+-+|..+ ..+.|+|.-...... ..+ .+..+..+|+.|++
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~---------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKV---------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred cchhhccCCcceeEEEecCCcee---------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 98753 23566666544332 1223333333 356677742211111 001 11122238999999
Q ss_pred eEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 442 IDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 442 i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
|-||.+...+++.....-....|..+ +|+|||..|+.+| ||+|.+..+...
T Consensus 306 lSVW~T~~~RPl~vi~~lf~~SI~Dm-sWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 306 LSVWNTALPRPLFVIHNLFNKSIVDM-SWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEecCCCCchhhhhhhhcCceeee-eEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999988888877765555778888 9999999999999 999999998764
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-27 Score=208.31 Aligned_cols=292 Identities=14% Similarity=0.256 Sum_probs=215.5
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--eEEecccCCCceEEEEEecCCCC-EEEEEeCCCeEEEEECCC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGTVSCTDLET 246 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 246 (546)
.+.|++|.|+|.. .+|++|+.|++++||.+..... +..+ ..-..+|.+++|.|+ |. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC-CceEEEecccceEEEEeeccc
Confidence 4689999999998 6999999999999999976433 2222 345779999999999 55 999999999999999998
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
.+....-...... ...+..+..++++++|+..+..|.|.+....++..+..+ ...+.|..++|+. ++..
T Consensus 290 ak~~k~~~~~g~e------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsS-dsk~ 358 (514)
T KOG2055|consen 290 AKVTKLKPPYGVE------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSS-DSKE 358 (514)
T ss_pred cccccccCCCCcc------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEec-CCcE
Confidence 8765433221111 114777888999999999999999999999887766533 2334799999998 8899
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcE--EEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV--NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
|++.+.+|.|++||++.... +..+...+.| +++|.++++.|||+||..|.|.|||..+.......+.+.....+.
T Consensus 359 l~~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred EEEEcCCceEEEEecCCcce---EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 99988999999999987643 4433233333 567777899999999999999999976543322222211111111
Q ss_pred ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC--CCCcccceeeecCCCcEEEEec-
Q 009022 405 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP--NITTISPVNKLHPRDDVLASGS- 481 (546)
Q Consensus 405 ~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~v~~~s~~~~~l~sgs- 481 (546)
..+..+.|+|+ +++++.. +-.....+++-.+.+-.....+... ..+.+.|+ +|||.+.+||.|.
T Consensus 436 --t~Itsl~Fn~d---------~qiLAia-S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 436 --TAITSLQFNHD---------AQILAIA-SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-AFSPNSGYLAVGNE 502 (514)
T ss_pred --eeeeeeeeCcc---------hhhhhhh-hhccccceEEEeccceeeeccCCCCCCcccceEEE-EecCCCceEEeecC
Confidence 11236788887 4444422 4556678899888877766655432 34567777 9999999999999
Q ss_pred CCcEEEEcCC
Q 009022 482 SRSIFIWRPK 491 (546)
Q Consensus 482 dg~i~vwd~~ 491 (546)
+|.|.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 8999999874
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-27 Score=195.54 Aligned_cols=248 Identities=18% Similarity=0.242 Sum_probs=202.6
Q ss_pred eeccCCCcccccccccc-ccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTTMSCPHRVA-TEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
+-++.||.-.+-...+. .+...++++.+-+.++|+-+....++.. .|..-|.+++|+.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--------------------~hkhivk~~af~~d 111 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--------------------EHKHIVKAVAFSQD 111 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--------------------hhhheeeeEEeccc
Confidence 34567777443333333 3355677778888889987665554433 38889999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
. ++|++|+.+..+||||++..+....-..+|++.|..+.|... .+.|++++.|++|++||.+++..+..+....
T Consensus 112 s-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s---- 185 (334)
T KOG0278|consen 112 S-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFNS---- 185 (334)
T ss_pred c-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecCC----
Confidence 8 689999999999999999887666655899999999999998 8899999999999999999999998887654
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.|+++.++++|++|.++.. +.|.+||..+...+ ........|.+..++| +..++++|+.|..++.||.
T Consensus 186 ------~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~l----Ks~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 186 ------PVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLL----KSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred ------CCcceeeccCCCEEEEecC-ceeEEeccccccce----eeccCccccccccccC-CCceEEecCcceEEEEEec
Confidence 4899999999998877654 78999999886544 3334445799999999 7799999999999999999
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.++...... ..+|.++|.|+.|+|+|...++||.||+|++|....++
T Consensus 254 ~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 254 NTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 887664332 35899999999999999999999999999999986554
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9e-28 Score=203.94 Aligned_cols=292 Identities=15% Similarity=0.188 Sum_probs=234.5
Q ss_pred CCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEE
Q 009022 108 GHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILL 187 (546)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 187 (546)
....+.|..+.+.+..+++++.++-+.+|+|....-.+-. . |. ..-.|.-|..+|.|+.|+.+. .+||
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-k-----YQ-----Aqd~fMMmd~aVlci~FSRDs-EMlA 279 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-K-----YQ-----AQDNFMMMDDAVLCISFSRDS-EMLA 279 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhh-h-----hh-----hhcceeecccceEEEeecccH-HHhh
Confidence 3345677788788899999999999999987654321110 0 00 112355689999999999998 6999
Q ss_pred EEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCccc
Q 009022 188 SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWR 267 (546)
Q Consensus 188 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 267 (546)
+|+.||.|+||.+.++.++..+.+.|+..|+|+.|+.+ +..+++++.|.++++.-+.+|+++..++.|..
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS--------- 349 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSS--------- 349 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccc---------
Confidence 99999999999999999999998899999999999999 99999999999999999999999999877654
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 347 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 347 (546)
.|+...|.++|..+++++.||+|++|+.++.....+... .....+|+.+...|.+...++++...++|+|.++. +
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----G 424 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----G 424 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----c
Confidence 488999999999999999999999999999877665433 33456899999999888999999999999999984 5
Q ss_pred ceeeec----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCce
Q 009022 348 SSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL 423 (546)
Q Consensus 348 ~~~~~~----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 423 (546)
+.+..+ ...+...+.+.+|.|.++.+.+.|+.++.|.+.+|++..... . ....++.++.+|+
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~----V----hEkdvIGl~HHPH------ 490 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP----V----HEKDVIGLTHHPH------ 490 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee----c----ccccccccccCcc------
Confidence 555554 244567778899999999999999999999999988633211 1 1112345666776
Q ss_pred eEEeeeeeecCCCCcCcceEEEE
Q 009022 424 AVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 424 ~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
.++++ +=+.||.+++|.
T Consensus 491 ---qNllA---sYsEDgllKLWk 507 (508)
T KOG0275|consen 491 ---QNLLA---SYSEDGLLKLWK 507 (508)
T ss_pred ---cchhh---hhcccchhhhcC
Confidence 44555 667889999984
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-26 Score=193.50 Aligned_cols=259 Identities=16% Similarity=0.189 Sum_probs=203.6
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg 288 (546)
......|+++.|+++ |.++++++.|.+|++||..+++.+..+....- .+..++|......++.++. |.
T Consensus 11 ~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skky---------G~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 11 RETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY---------GVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred ccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccc---------cccEEEEecCCceEEEccCCCCC
Confidence 346788999999999 99999999999999999999999988865543 3777888888888887776 88
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
.|+..++.+.+.++ -+.+|...|++++.+| -+..+++++.|++|++||+|..+..-.+.. ..-..++|.|.|
T Consensus 81 tIryLsl~dNkylR---YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~AfDp~G 152 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLR---YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAFDPEG 152 (311)
T ss_pred ceEEEEeecCceEE---EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec----CCCcceeECCCC
Confidence 99999999877654 4567777999999999 779999999999999999997665444432 222357899999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
-++|++...+.|++||++.... .|...... .......-..+.|+|+ |+++. -+...+.+++.|.-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i--~~~~~~ew~~l~FS~d---------GK~iL---lsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDK-GPFTTFSI--TDNDEAEWTDLEFSPD---------GKSIL---LSTNASFIYLLDAF 217 (311)
T ss_pred cEEEEecCCCeEEEEEecccCC-CCceeEcc--CCCCccceeeeEEcCC---------CCEEE---EEeCCCcEEEEEcc
Confidence 9999999888999999986532 12111111 1122222236889998 77777 56677889999999
Q ss_pred chhhhHhhcCCCCCcccce-eeecCCCcEEEEec-CCcEEEEcCCCCCccceeecc
Q 009022 449 TGQLVAEVMDPNITTISPV-NKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v-~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
+|..+.++.++....-..+ .+|+|+++++++|+ ||+|.+|++.+|..+..+.++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 9999998887754442222 26999999999999 899999999999999999885
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=190.47 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=222.6
Q ss_pred CCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcE
Q 009022 107 PGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHI 185 (546)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 185 (546)
.+|. .+.....+..+..+++++-+.+..+|.....+-... ....+|.+.|-.++|+|..+.+
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 3444 333444555667788888888888887655432221 2467899999999999988889
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
|++++.|.+|++||+..+++...+. ....=.-+.|+|+ +.+++.+..|..|.+.|.++.+.....+...
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-------- 148 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFKF-------- 148 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhcccc--------
Confidence 9999999999999999998888774 3444456889999 9999999999999999999888776654432
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 345 (546)
.++-++|+-++.+++.....|.|.|......+++. .+..|...+.||.|+| +|++||+|+.|..+.+||+...-
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---SIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccccccc---ccccCCcceEEEEECC-CCceEeeccccceeeccChhHhh
Confidence 47889999888888888888999999888655543 4566777899999999 99999999999999999997655
Q ss_pred CCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeE
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 425 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 425 (546)
..+.+. .+.-+|..+.|+.+|++||++|.|..|-|=++.+|..+ +.+......++++|+|...-.+++.
T Consensus 223 C~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~---------~eI~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 223 CERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV---------WEIPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred hheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeE---------EEeeccCCceeEEecCCCceeeEEe
Confidence 544443 47889999999999999999999999999999988752 2233334446899999854333333
Q ss_pred EeeeeeecCCCCcCcceEEEEC
Q 009022 426 IGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 426 ~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
+.+.-- +...-|.|++|-+
T Consensus 292 ddk~~d---~~reag~vKiFG~ 310 (313)
T KOG1407|consen 292 DDKDGD---SNREAGTVKIFGL 310 (313)
T ss_pred cCCCCc---cccccceeEEecC
Confidence 221110 1222366777654
No 89
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.3e-26 Score=218.81 Aligned_cols=262 Identities=17% Similarity=0.124 Sum_probs=180.0
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC------CCCCCCCcccceEEEEecC-CCCEEEEEeCCC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP------NGWHGPRTWRMLYGMDINP-EKGVVLVADNFG 288 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 288 (546)
.|+....+++ +..+++++.+.....|+...+..+..+.... ..+.+ +...|.+++|+| ++++|++|+.|+
T Consensus 22 ~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G--H~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG--QEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC--CCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3444555565 5667777777777788765543222111000 00112 234699999999 889999999999
Q ss_pred cEEEEeCCCCCCC----cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEE
Q 009022 289 FLYLVDARTNSRS----GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAY 363 (546)
Q Consensus 289 ~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~ 363 (546)
.|++||+...... .....+..|...|.+++|+|...++|++++.|++|+|||+.+... +..+ +|...|.+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EEEEcCCCCceEEEE
Confidence 9999999765321 123345567779999999994457999999999999999986543 3333 6889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceE
Q 009022 364 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPID 443 (546)
Q Consensus 364 ~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~ 443 (546)
|+|++.+|++++.|+.|++||+++++.+.. ...+ .......+.|.|.. +.+++..++++.|+.|+
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~t----l~~H---~~~~~~~~~w~~~~--------~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSS----VEAH---ASAKSQRCLWAKRK--------DLIITLGCSKSQQRQIM 240 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEE----EecC---CCCcceEEEEcCCC--------CeEEEEecCCCCCCeEE
Confidence 999999999999999999999998764221 1111 11112356788763 22333334567799999
Q ss_pred EEECCchhhhHh-hcCCCCCcccceeeecCCCcEEEEec--CCcEEEEcCCCCCcccee
Q 009022 444 FIDITTGQLVAE-VMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 444 iwd~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd~~~~~~~~~~ 499 (546)
+||+++...... +..+....+. +..|++++++|++|+ |+.|++|++.+++.+...
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~-~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALF-IPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceE-EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 999987653322 2223322333 237899999988865 899999999998876554
No 90
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.1e-25 Score=217.11 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=176.3
Q ss_pred EcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce--------eeeeecCCCCC
Q 009022 189 GDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--------LSLMNVNPNGW 260 (546)
Q Consensus 189 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~ 260 (546)
|+.++.|++|+.........+ .+|...|.+++|+|+.+.+|++|+.||+|++|++.++.. +..+..|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--- 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--- 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC---
Confidence 667889999998776655555 789999999999997578999999999999999986432 11222221
Q ss_pred CCCCcccceEEEEecCCCCEE-EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 261 HGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
..|.+++|+|++..+ ++++.|+.|++||++++..... .. +...|.+++|+| ++.+|++++.|+.|+||
T Consensus 126 ------~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~---i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 126 ------KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ---IN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHII 194 (568)
T ss_pred ------CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE---Ee-cCCcEEEEEECC-CCCEEEEEecCCEEEEE
Confidence 259999999998764 6889999999999998764322 22 345799999999 99999999999999999
Q ss_pred ECCCCCCCceeeecCCCCcEEEE-----EEeCCCCEEEEEeCCC----cEEEEECCCCCCCCCCcceeeccCCcccCCce
Q 009022 340 DIRRLEAGSSLCDLPHKRVVNSA-----YFSPSGSKILTTSQDN----RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 410 (546)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~v~~~-----~~~p~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (546)
|++++..... ..+|.+.+.+. .|++++.+|++++.++ .|+|||++.... + +....+......+
T Consensus 195 D~Rsg~~i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--p----l~~~~ld~~~~~L 266 (568)
T PTZ00420 195 DPRKQEIASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--A----LVTMSIDNASAPL 266 (568)
T ss_pred ECCCCcEEEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC--c----eEEEEecCCccce
Confidence 9987554322 23677654332 3458889999988774 799999985221 1 1111222223333
Q ss_pred eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC
Q 009022 411 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 411 ~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
...|.+.. |.+++ +|..|++|++|++..+.....-.......+.++ +|.|..
T Consensus 267 ~p~~D~~t--------g~l~l---sGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~-~f~Pkr 318 (568)
T PTZ00420 267 IPHYDEST--------GLIYL---IGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF-GFLPKQ 318 (568)
T ss_pred EEeeeCCC--------CCEEE---EEECCCeEEEEEccCCcEEeecccccCCCccce-EEcccc
Confidence 34454442 55555 788999999999987642221112233445566 788864
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=203.98 Aligned_cols=290 Identities=16% Similarity=0.209 Sum_probs=225.4
Q ss_pred eeeccCCCcccccccccccc--CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEc
Q 009022 102 FLCKMPGHTTMSCPHRVATE--YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFH 179 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 179 (546)
+++.+.||..++.+..-.+. ..+++++.|+..++|+... ..|+.+|..|.+.|..|++.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEEec
Confidence 45567899965544444443 5688889999999997442 23456788999999999998
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCC
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG 259 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 259 (546)
. + .+++++.|.+|+.|.+... ....+. -...+..|.-+.. +..+++++. .|.|||.....++..+.....
T Consensus 119 ~-~--~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D- 188 (433)
T KOG0268|consen 119 Q-T--SFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGAD- 188 (433)
T ss_pred c-c--ceEEecCCcceeeeeccCC-cceeee--ccccccccccccc-cccccccCc--eeeecccccCCccceeecCCC-
Confidence 7 3 4889999999999998874 333332 4456777777766 788999886 599999998888888776554
Q ss_pred CCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 260 WHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
.|.++.|+|.. ..|+++..|+.|.+||+++..++.++.... .-+.|+|+| ....|++|+.|..++.
T Consensus 189 --------ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m----RTN~IswnP-eafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 189 --------SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM----RTNTICWNP-EAFNFVAANEDHNLYT 255 (433)
T ss_pred --------ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec----cccceecCc-cccceeecccccccee
Confidence 48999999965 566667799999999999998887654433 467899999 9999999999999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 418 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (546)
||++.......+ ..+|.+.|..+.|+|.|+.|++||.|.+|+||.++.+.. +.+.+.. +....+++.|+.+
T Consensus 256 ~DmR~l~~p~~v-~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S----RdiYhtk---RMq~V~~Vk~S~D- 326 (433)
T KOG0268|consen 256 YDMRNLSRPLNV-HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS----RDIYHTK---RMQHVFCVKYSMD- 326 (433)
T ss_pred hhhhhhcccchh-hcccceeEEEeccCCCcchhccccccceEEEeecCCCcc----hhhhhHh---hhheeeEEEEecc-
Confidence 999976653222 237999999999999999999999999999999987654 3333332 2334568999988
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECCchhhh
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
.+|+. +|+.|+.|++|.....+.+
T Consensus 327 --------skyi~---SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 327 --------SKYII---SGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred --------ccEEE---ecCCCcceeeeecchhhhc
Confidence 88888 9999999999998755443
No 92
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=194.88 Aligned_cols=292 Identities=16% Similarity=0.219 Sum_probs=212.6
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeee
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 252 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (546)
-.|+.|++-| .+||+|+.+|.|.|||+.+......+ .+|..+|++++|+++ ++.|++++.|..|.+||+..|.++..
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeE
Confidence 7799999999 69999999999999999987755555 789999999999999 99999999999999999999999988
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecC---CCcEEEEEECCCCCCEEE
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRK---GSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~~l~ 328 (546)
+.+.. +|+...|+|.....+++ -.+..-.+.++..+. ...+..... .....+..|.+ .|++++
T Consensus 103 irf~s----------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr-~g~yIi 169 (405)
T KOG1273|consen 103 IRFDS----------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDR-RGKYII 169 (405)
T ss_pred EEccC----------ccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccC-CCCEEE
Confidence 87764 58999999965433333 223334444444321 111111111 11223345777 899999
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC-
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL- 407 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~- 407 (546)
+|...|.+.+|+..+.+....++.. ....|..+.++..|+.|+..+.|..||.|+++.-........+...+.+...+
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EecCcceEEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 9999999999999877664444332 24679999999999999999999999999986311110001111111111110
Q ss_pred --CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcE
Q 009022 408 --TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSI 485 (546)
Q Consensus 408 --~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i 485 (546)
.=-+++|+.+ |.|+.. +......++||....|.+++.+.|........+ .|+|-...+++-..|.|
T Consensus 249 k~~Wk~ccfs~d---------geYv~a--~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV-~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 249 KLQWKKCCFSGD---------GEYVCA--GSARAHALYIWEKSIGSLVKILHGTKGEELLDV-NWHPVRPIIASIASGVV 316 (405)
T ss_pred hhhhhheeecCC---------ccEEEe--ccccceeEEEEecCCcceeeeecCCchhheeec-ccccceeeeeeccCCce
Confidence 0013555554 777763 235567899999999999999988887777788 89999999999888999
Q ss_pred EEEcCCCC
Q 009022 486 FIWRPKEK 493 (546)
Q Consensus 486 ~vwd~~~~ 493 (546)
+||....-
T Consensus 317 ~iw~~~~~ 324 (405)
T KOG1273|consen 317 YIWAVVQV 324 (405)
T ss_pred EEEEeecc
Confidence 99997543
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-26 Score=188.27 Aligned_cols=292 Identities=16% Similarity=0.204 Sum_probs=218.2
Q ss_pred CCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcE
Q 009022 107 PGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHI 185 (546)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 185 (546)
.||. +.....++..+..+.+++++.+..+|-- + ....+.++.||++.|+|+....+. +.
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-----~--------------nGerlGty~GHtGavW~~Did~~s-~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-----L--------------NGERLGTYDGHTGAVWCCDIDWDS-KH 66 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEe-----c--------------CCceeeeecCCCceEEEEEecCCc-ce
Confidence 5677 4555566667788899999988888831 1 123347899999999999999988 78
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-----CCeEEEEECCCC-------ceeeee
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-----DGTVSCTDLETG-------LALSLM 253 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~-------~~~~~~ 253 (546)
|+||+.|.+++|||+.+++++..+. ...+|..+.|++. +++++.+.. .+.|.++|++.. .+...+
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 9999999999999999999999875 7789999999998 777777654 477999999833 333343
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 333 (546)
..+. ..++.+-|.|-+.+|++|..+|.|..||++++.........| ...|+.++++| +..++++++.|
T Consensus 144 ~t~~---------skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~-d~T~FiT~s~D 211 (327)
T KOG0643|consen 144 PTPD---------SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSR-DRTYFITGSKD 211 (327)
T ss_pred cCCc---------cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccC-CcceEEecccC
Confidence 3332 258899999999999999999999999999987654443444 44899999999 99999999999
Q ss_pred CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc--EEEEECCCCCCCCCCcceee---ccCCcccCC
Q 009022 334 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR--LRIWDSIFGNLDSPSREIVH---SHDFNRHLT 408 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~ 408 (546)
.+-++||+++... ++.+....+|++.+++|....++.|+.... |.-=+.+.|+.....-..+. ...+.+|..
T Consensus 212 ttakl~D~~tl~v---~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 212 TTAKLVDVRTLEV---LKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred ccceeeeccceee---EEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence 9999999986554 444456789999999997777776654322 33333334443222222111 123344444
Q ss_pred c-eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 409 P-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 409 ~-~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+ -+++++|+ |+..+ +|+.||.|++.-..
T Consensus 289 PINsvAfhPd---------GksYs---SGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 289 PINSVAFHPD---------GKSYS---SGGEDGYVRLHHFD 317 (327)
T ss_pred CcceeEECCC---------Ccccc---cCCCCceEEEEEec
Confidence 4 46899999 77777 99999999997543
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=194.77 Aligned_cols=298 Identities=16% Similarity=0.174 Sum_probs=217.3
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
.++.|.||.+.|+.++..... .++.+++.|.+.+||.++++.++..+ .+|.+.|++|+|++. +.++++++.|++.+|
T Consensus 140 lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s-~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS-GLLLLTASGDETAHI 216 (481)
T ss_pred ehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeee-cccccceeeEEeccc-cceEEEccCCcchHH
Confidence 456789999999999998877 58999999999999999999999999 799999999999999 999999999999999
Q ss_pred EECC----CCceee-----------------------------eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC
Q 009022 242 TDLE----TGLALS-----------------------------LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 288 (546)
Q Consensus 242 wd~~----~~~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 288 (546)
|... ..+... .+..+.-.+. .+...|.+..|-..|+.+++++.|.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccc
Confidence 9721 111000 0000000011 1223577778888999999999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 367 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~ 367 (546)
+..+||+.++..+. .+.+|....+.++-+| ..+++++.+.|.+.++||++ ...+.+..+ +|...|+++.|..+
T Consensus 295 TAnlwDVEtge~v~---~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 295 TANLWDVETGEVVN---ILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred cceeeeeccCceec---cccCcchhccccccCC-cceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecC
Confidence 99999999988765 3345555788899999 88999999999999999998 334444444 89999999999864
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 368 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
..+++|+.|.+|+|||+++.+. |...+.... .. .+++.+. .+..++ .-..+..|++||+
T Consensus 369 -d~vVSgSDDrTvKvWdLrNMRs--plATIRtdS----~~--NRvavs~---------g~~iIA---iPhDNRqvRlfDl 427 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNMRS--PLATIRTDS----PA--NRVAVSK---------GHPIIA---IPHDNRQVRLFDL 427 (481)
T ss_pred -CceeecCCCceEEEeeeccccC--cceeeecCC----cc--ceeEeec---------CCceEE---eccCCceEEEEec
Confidence 4588999999999999987542 111111111 11 1222222 234555 3456788999999
Q ss_pred CchhhhHhhc----CCCCCcccceeeecCCC--cEEEEec-CCcEEEEcCCCC
Q 009022 448 TTGQLVAEVM----DPNITTISPVNKLHPRD--DVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 448 ~~~~~~~~~~----~~~~~~i~~v~~~s~~~--~~l~sgs-dg~i~vwd~~~~ 493 (546)
...+ +..+. ..|...++++ +|..+. .-|++++ |..+.=|++...
T Consensus 428 nG~R-laRlPrtsRqgHrRMV~c~-AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNR-LARLPRTSRQGHRRMVTCC-AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCc-cccCCcccccccceeeeee-eccccCcccccccccccceeeeeEeccc
Confidence 6443 33332 2233667776 886543 4577777 999999998654
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=207.53 Aligned_cols=258 Identities=18% Similarity=0.216 Sum_probs=196.3
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEE
Q 009022 214 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 293 (546)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 293 (546)
...|.+++|+|..+.-+++++. -.+.+|+..+......+.--.. .+++++|..||+++++|+..|.|++|
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~---------~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKD---------VVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhcc---------ceeEEEeecCCeEEEccCCcCcEEEe
Confidence 4689999999986666666554 5799999988777664432222 48999999999999999999999999
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEE
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKIL 372 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~ 372 (546)
|+.+...+. ....|..++..+.|+|+++..|++|+.|+.+++||+.+... .....+|...|.|.+|+| ++.+++
T Consensus 96 D~k~r~iLR---~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 96 DMKSRVILR---QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred ccccHHHHH---HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEE
Confidence 966532222 34566669999999998889999999999999999986542 333448999999999999 677999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh
Q 009022 373 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 452 (546)
Q Consensus 373 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~ 452 (546)
|||.||.|++||++.... . ...+++....-.+.+-|. |..++ ....+.|+|||+.+|..
T Consensus 171 tGsYDg~vrl~DtR~~~~------~--v~elnhg~pVe~vl~lps---------gs~ia----sAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTS------R--VVELNHGCPVESVLALPS---------GSLIA----SAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred ecCCCceEEEEEeccCCc------e--eEEecCCCceeeEEEcCC---------CCEEE----EcCCCeEEEEEecCCce
Confidence 999999999999986421 1 111222222224555555 55665 23347799999996654
Q ss_pred hHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 453 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 453 ~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
+......|...++|+ .+..++..|++|+ |+.|++|++.+-+.+..+.-+++++.+
T Consensus 230 ll~~~~~H~KtVTcL-~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCL-RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSI 285 (487)
T ss_pred ehhhhhcccceEEEE-EeecCCceEeecccccceEEEEccceEEEEeeecccceeeE
Confidence 444444344889998 8999999999999 999999999998999988888887555
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=188.52 Aligned_cols=251 Identities=17% Similarity=0.262 Sum_probs=193.3
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC--EEEEEeCCC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG--VVLVADNFG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg 288 (546)
..|.++|++++.+ +.++++|+.|-+|+|||+++...+..+..|.. .|+++.|.+.-. .|++|+.||
T Consensus 40 ~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag---------sitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 40 SAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAG---------SITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred cccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceecccc---------ceEEEEecCCcchhheeeecCCC
Confidence 6799999999987 78999999999999999999888877766543 599999998765 899999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
.|.+|+........ .+..|.+.|+.++++| .+.+.++.+.|+.+++||+-+++...++. +.+.. +.+.|+|.|
T Consensus 108 ~i~iw~~~~W~~~~---slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~a--t~v~w~~~G 180 (362)
T KOG0294|consen 108 HIIIWRVGSWELLK---SLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKA--TLVSWSPQG 180 (362)
T ss_pred cEEEEEcCCeEEee---eecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec-cCCcc--eeeEEcCCC
Confidence 99999998864433 3445555799999999 99999999999999999998877654443 34443 449999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
.+++.++.+ .|-+|.+.+..+...... ...++++.|.- +.+++ +|..++.|.+||..
T Consensus 181 d~F~v~~~~-~i~i~q~d~A~v~~~i~~---------~~r~l~~~~l~----------~~~L~---vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 181 DHFVVSGRN-KIDIYQLDNASVFREIEN---------PKRILCATFLD----------GSELL---VGGDNEWISLKDTD 237 (362)
T ss_pred CEEEEEecc-EEEEEecccHhHhhhhhc---------cccceeeeecC----------CceEE---EecCCceEEEeccC
Confidence 999988766 599999877654332111 11223333333 44444 78999999999999
Q ss_pred chhhhHhhcCCCCCcccceee-ecCCCcEEEEec-CCcEEEEcCCCC-----Cccceeeccce
Q 009022 449 TGQLVAEVMDPNITTISPVNK-LHPRDDVLASGS-SRSIFIWRPKEK-----SELVEQKEEMK 504 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v~~-~s~~~~~l~sgs-dg~i~vwd~~~~-----~~~~~~~~~~~ 504 (546)
++.+...+.+|. ..|-.+.. -.|.+.||+|+| ||.|+|||++.. .++.......+
T Consensus 238 s~~~~~~~~AH~-~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~R 299 (362)
T KOG0294|consen 238 SDTPLTEFLAHE-NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVR 299 (362)
T ss_pred CCccceeeecch-hheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCc
Confidence 998888888876 66776632 357789999998 999999999876 44555544333
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=9.4e-27 Score=204.08 Aligned_cols=285 Identities=15% Similarity=0.194 Sum_probs=219.4
Q ss_pred cCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCc
Q 009022 106 MPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNH 184 (546)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 184 (546)
+..|.. +-...++.....+.+++.+..+++|...-... ..+.+|.|-.+.|+++.|.+++ +
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-----------------~~~~tLaGs~g~it~~d~d~~~-~ 232 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-----------------ELISTLAGSLGNITSIDFDSDN-K 232 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-----------------hhhhhhhccCCCcceeeecCCC-c
Confidence 344442 23334444557788888888888887543331 1235688888999999999999 7
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
.+++++.|+.+++|++...+...++ .+|...|+++.|... ...+++|+.|.+|++||+....+...+....
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------- 303 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------- 303 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhcc-ccceeeccccchhhhhhhhhhheeccccccc-------
Confidence 8999999999999999999888888 689999999999887 5559999999999999999988876654322
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.+..|..+ ...+++|-.|+.|++||++........ ..++.|+++..++ ++..|++.+.|.++.+.|+++.
T Consensus 304 ---~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv----~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 304 ---QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV----PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred ---cccceEec--ceeeeecccccceEEEeccCCceeeEe----ecCcceeeEeecc-CCeEEeeecCCCceeeeecccc
Confidence 24455544 667889999999999999987655422 2334899999999 9999999999999999999987
Q ss_pred CCCceeeecC--CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCc
Q 009022 345 EAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 422 (546)
Q Consensus 345 ~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 422 (546)
....++...+ ....++.+.|||++.|+++||.||.|+||++.++++...... . .....++++.|+|.
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~----s--~s~~aI~s~~W~~s----- 442 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL----S--TSNAAITSLSWNPS----- 442 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc----C--CCCcceEEEEEcCC-----
Confidence 6655554332 334589999999999999999999999999999987432111 1 11114568999997
Q ss_pred eeEEeeeeeecCCCCcCcceEEE
Q 009022 423 LAVIGRYISENYNGAALHPIDFI 445 (546)
Q Consensus 423 ~~~~g~~~~~~~~g~~d~~i~iw 445 (546)
|.++. +.+.++.+.+|
T Consensus 443 ----G~~Ll---sadk~~~v~lW 458 (459)
T KOG0288|consen 443 ----GSGLL---SADKQKAVTLW 458 (459)
T ss_pred ----Cchhh---cccCCcceEec
Confidence 77776 67778888888
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=196.46 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=198.1
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
..+|.||...|+.+.|+|+. ..+++++.|..|+||........... ..|..+|+.+..+|. +.||++++.||+..+.
T Consensus 254 l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT-GEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC-CcEEEEecCCceEEEE
Confidence 46799999999999999998 68999999999999999887766665 789999999999999 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|++++..+......... ..+++.+|+|||..|.+|..||.|++||+..+.... .+.+|.++|..++|+.
T Consensus 331 d~~~g~~lt~vs~~~s~-------v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~Fpght~~vk~i~FsE- 399 (506)
T KOG0289|consen 331 DISSGSQLTVVSDETSD-------VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KFPGHTGPVKAISFSE- 399 (506)
T ss_pred EccCCcEEEEEeecccc-------ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cCCCCCCceeEEEecc-
Confidence 99999988776543211 258999999999999999999999999999877443 5567888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
+|.+|+++..|+.|++||+|..+..+.+.. .....|.+++|.+.|.+|+.++.+=.|++++-.+... ..+...+.
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W----~~~~~~~~ 474 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW----TEIKELAD 474 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEecccccc----eeeehhhh
Confidence 999999999999999999998775554432 3444799999999999999998776666666433221 11111111
Q ss_pred CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 403 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 403 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
..+. ...+.|... .++++ +++.|..++++.+
T Consensus 475 ~sg~--st~v~Fg~~---------aq~l~---s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 HSGL--STGVRFGEH---------AQYLA---STSMDAILRLYAL 505 (506)
T ss_pred cccc--cceeeeccc---------ceEEe---eccchhheEEeec
Confidence 1111 112333333 56666 8888888888754
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-24 Score=173.92 Aligned_cols=291 Identities=15% Similarity=0.228 Sum_probs=209.4
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC----------C----ceeEEecccCCCceEEEEEecC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----------V----SEKIVYGNIHSCIVNNIRFNPT 225 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~----------~----~~~~~~~~~~~~~v~~~~~~~~ 225 (546)
..++.+|. .+..|.+++|+|.| .+.++|+...+++|..... . .......+.|.+.|.|.+|+|.
T Consensus 23 f~~i~~l~-dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred eEEEEEec-chhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34444444 56789999999999 6999999999999975432 1 1122233679999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceee-----eeecCCCCCCCCCcccceEEEEecCC----CCEEEEEe-CCCcEEEEeC
Q 009022 226 NDGTVYAASSDGTVSCTDLETGLALS-----LMNVNPNGWHGPRTWRMLYGMDINPE----KGVVLVAD-NFGFLYLVDA 295 (546)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~ 295 (546)
+.+|++|+.|.+|++.-++...+.. .+..+. ..|..++|..+ +.+|++++ .|..|++-|.
T Consensus 101 -geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---------gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 101 -GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---------GTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred -cCeEEecCCCceEEEEecccccccccCcceeeeecC---------CceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 9999999999999998776443321 222222 25888998543 45666654 5668888888
Q ss_pred CCCCCCcceEEeecCCCcEEEE-EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-----CCCcEEEEEEeCCCC
Q 009022 296 RTNSRSGEAILIHRKGSKVVGL-HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNSAYFSPSGS 369 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~ 369 (546)
.+++... ...+|.+.|.++ .| ++-.|++|+.|.+|++||++-......+-..- ..+.|.+++..|.|+
T Consensus 171 ~~g~~~~---a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 171 GRGQGFH---ALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred CCCCcce---eecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 8876554 445666677776 45 56899999999999999998654433332221 246799999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+|++|-.|....+||++.++.++... ......-++.|+|. ..|+. +++.|..|++-|++.
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~--------phsadir~vrfsp~---------a~yll---t~syd~~ikltdlqg 304 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFH--------PHSADIRCVRFSPG---------AHYLL---TCSYDMKIKLTDLQG 304 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeC--------CCccceeEEEeCCC---------ceEEE---EecccceEEEeeccc
Confidence 99999999999999999888754311 11122236789997 66666 899999999999853
Q ss_pred hhhhHh-----hcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 450 GQLVAE-----VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 450 ~~~~~~-----~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
.+... +..|. ..+..+ .|+|..--+++.+ |.++.+|-+.
T Consensus 305 -dla~el~~~vv~ehk-dk~i~~-rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 305 -DLAHELPIMVVAEHK-DKAIQC-RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -chhhcCceEEEEecc-CceEEE-EecCccceeeeccCcceEEEeccC
Confidence 32222 22344 444444 7999988888888 9999999763
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=215.99 Aligned_cols=260 Identities=18% Similarity=0.239 Sum_probs=204.3
Q ss_pred ceeeee-ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 160 QVNCAV-IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 160 ~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
...+.. +.||.+.|.+++|..-+ .+|++|+.|.+++|||..++.+...+ .+|...|.++...+ .++++|+.|.+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~---~~~~sgs~D~t 312 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDP---FLLVSGSRDNT 312 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccC---ceEeeccCCce
Confidence 334444 99999999999998744 68999999999999999999999998 69999999998874 48899999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
|++|++.++..+..+..+.. +|+++.++ +.++++|+.|+.|.+|++.+++.+. ...+|...|+++.
T Consensus 313 VkVW~v~n~~~l~l~~~h~~---------~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTG---------PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSGHTGRVYSLI 378 (537)
T ss_pred EEEEeccCcceEEEeccccc---------cEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecCCcceEEEEE
Confidence 99999999999998876443 59999887 8999999999999999999877654 3345777999998
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
+.+ . ..+++|+.|++|++||+++.. .++..+ +|...|..+.+ .+++|++++.|++|++||..++++.......
T Consensus 379 ~~~-~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 379 VDS-E-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ecC-c-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence 865 3 899999999999999998762 344444 67777766655 7899999999999999999998875432211
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccc
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 465 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 465 (546)
.......+.+. -..++ +++.++.+++||++++++...+..+......
T Consensus 453 -------~~~~v~~l~~~-----------~~~il---~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~ 499 (537)
T KOG0274|consen 453 -------HVGGVSALALG-----------KEEIL---CSSDDGSVKLWDLRSGTLIRTLLSTDLGATW 499 (537)
T ss_pred -------CcccEEEeecC-----------cceEE---EEecCCeeEEEecccCchhhhhhhccccccc
Confidence 00111111111 02222 5788999999999999999888555434444
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.7e-25 Score=199.09 Aligned_cols=212 Identities=18% Similarity=0.287 Sum_probs=172.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce------eEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
..|.||.+.-++|+|++...-.|++|+.|++|++||+..... ......+|...|..++|+|.+..+|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 568999999999999998767899999999999999976432 33444789999999999999889999999999
Q ss_pred eEEEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 238 TVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 238 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.+.|||++++ +.......+ ...++|++|+| ++..||+|+.|++|.+||+|+... .+..+..|...|
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah---------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev 319 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAH---------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEV 319 (422)
T ss_pred eEEEEEcCCCCCCCccccccc---------CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcce
Confidence 9999999963 333333222 23699999999 566788889999999999999776 344667777899
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc-----------e-eeecCCCCcEEEEEEeCCCC-EEEEEeCCCcEE
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS-----------S-LCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLR 381 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~-~~~~~~~~~v~~~~~~p~~~-~l~s~s~dg~i~ 381 (546)
.+|.|+|.....||+++.|+.+.|||+..-...+ . +.--||...|..+.|+|+.. .|++.+.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 9999999888999999999999999997432221 2 22238999999999999554 577888999999
Q ss_pred EEECC
Q 009022 382 IWDSI 386 (546)
Q Consensus 382 vwd~~ 386 (546)
||...
T Consensus 400 IW~~s 404 (422)
T KOG0264|consen 400 IWQMA 404 (422)
T ss_pred Eeecc
Confidence 99875
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=174.54 Aligned_cols=258 Identities=19% Similarity=0.282 Sum_probs=192.1
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee-----EEecccCCCceEEEEEecC---CCCEEE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPT---NDGTVY 231 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~ 231 (546)
....+.-+.|.+.|+|.+|+|.| .+|++|+.|.+|++.-++...+. ..+ .-|.+.|..++|-.+ ++.+|+
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred eEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEE
Confidence 34446667899999999999999 79999999999999877643221 222 459999999999654 356677
Q ss_pred EEeC-CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE-eec
Q 009022 232 AASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHR 309 (546)
Q Consensus 232 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~ 309 (546)
+++. |..|++-|..+|+....+..+... |.++ ++-++-++++|+.|.+|++||++-...+..+-. .+.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtgh---------ilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGH---------ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCccc---------EEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 7654 677888888899888887766542 4443 466889999999999999999987655433211 122
Q ss_pred C---CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 310 K---GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 310 ~---~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
. ...|.+++..| .+++|++|-.|....+||++-+...+.+ .+|...|.|+.|+|...|+++|+.|..|++-|+.
T Consensus 227 ~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f--~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeee--CCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 2 25799999999 9999999999999999999865553333 3799999999999999999999999999999986
Q ss_pred CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 387 FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
. .+.......+ ........+.+.|+|.+ -.++ +.+.|.++.+|-+.
T Consensus 304 g-dla~el~~~v---v~ehkdk~i~~rwh~~d--------~sfi----sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 G-DLAHELPIMV---VAEHKDKAIQCRWHPQD--------FSFI----SSSADKTATLWALN 349 (350)
T ss_pred c-chhhcCceEE---EEeccCceEEEEecCcc--------ceee----eccCcceEEEeccC
Confidence 3 3322211111 11223345689999984 1222 57889999999653
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=204.93 Aligned_cols=323 Identities=13% Similarity=0.144 Sum_probs=232.5
Q ss_pred ccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC-CCceEEEEEecCCCCEEEEE
Q 009022 155 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 155 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~ 233 (546)
+.+.+...+.+++++...|+++.-+|-- ..+|.|..+|+|.|+++...+.+..+. | .++|+.++|.-++...+++|
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEec
Confidence 4445577788999999999999999987 489999999999999999999999885 5 59999999999977788888
Q ss_pred eCCCeEEEEECCCCceeeeee-cCCCCCCC-------------------------------------CCcccceEEEEec
Q 009022 234 SSDGTVSCTDLETGLALSLMN-VNPNGWHG-------------------------------------PRTWRMLYGMDIN 275 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~-------------------------------------~~~~~~v~~~~~~ 275 (546)
+..|.+.+||++..+.+.... .|.....+ ..+..+..++.|.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 888999999999877665544 22111000 0111233344443
Q ss_pred -CCCCEEEEEeCCCcEEEEeCCCCC-------------------------------------------------------
Q 009022 276 -PEKGVVLVADNFGFLYLVDARTNS------------------------------------------------------- 299 (546)
Q Consensus 276 -~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------------------- 299 (546)
.++..+.+++.|+.++.+++....
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 445555555555555444332100
Q ss_pred ---------CCcceE----EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceee-ecCCCCcEEEEEEe
Q 009022 300 ---------RSGEAI----LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFS 365 (546)
Q Consensus 300 ---------~~~~~~----~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~ 365 (546)
..+... ........+++++.++ .|++.+.|+..|.|-+|++.++-....+. ...|..+|+.++..
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence 000000 0001224678889998 99999999999999999997654433332 22699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE
Q 009022 366 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 445 (546)
Q Consensus 366 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw 445 (546)
.-++.+++++.+|.+.+||.....+... ......+. .+.++-. ..+++ .+..+-.|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~-------l~l~~~~~--~iv~hr~---------s~l~a---~~~ddf~I~vv 561 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKS-------LRLGSSIT--GIVYHRV---------SDLLA---IALDDFSIRVV 561 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeee-------eccCCCcc--eeeeeeh---------hhhhh---hhcCceeEEEE
Confidence 8889999999999999999987664221 11111111 1222211 22233 57788899999
Q ss_pred ECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 446 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 446 d~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
|+.|.+.++.|.+|. ..++.+ +|||+|++|++++ |++|++||+.++.++..+....+
T Consensus 562 D~~t~kvvR~f~gh~-nritd~-~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHG-NRITDM-TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred EchhhhhhHHhhccc-cceeee-EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 999999999999987 888888 9999999999999 99999999999998877765554
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=183.59 Aligned_cols=258 Identities=17% Similarity=0.191 Sum_probs=191.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--eEEecccCCCceEEEEEe-cCCCCEEEEEeCCCeEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFN-PTNDGTVYAASSDGTVS 240 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~ 240 (546)
.+-..|.+.|..+...-.| +.|||++.|++|+|+.+.+... +...+.+|.+||..++|. |.-+.+|++++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 4456799999998888888 6899999999999999987542 333338999999999995 44489999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
||.-..++-....... .+...|++++|.|. |-.|++++.||.|.+++.+.............|...|++++
T Consensus 84 iWke~~g~w~k~~e~~-------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHA-------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EEecCCCchhhhhhhh-------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 9998887443322211 11125999999885 67899999999999999987632222223345555799999
Q ss_pred ECCCC--C-----------CEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCC----CCEEEEEeCCCcE
Q 009022 319 CNPIQ--P-----------ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS----GSKILTTSQDNRL 380 (546)
Q Consensus 319 ~~p~~--~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~----~~~l~s~s~dg~i 380 (546)
|.|.. + ..|++|+.|..|+||+.....- ..-..+ +|...|..++|.|. ..+|++++.||+|
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 99831 2 4699999999999999976422 111223 79999999999994 3579999999999
Q ss_pred EEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 381 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
.||... .+. + -| ..+++.. -
T Consensus 236 iIwt~~-~e~---------------------------------------------e-------~w---k~tll~~----f 255 (299)
T KOG1332|consen 236 IIWTKD-EEY---------------------------------------------E-------PW---KKTLLEE----F 255 (299)
T ss_pred EEEEec-Ccc---------------------------------------------C-------cc---ccccccc----C
Confidence 999764 111 0 00 1122222 2
Q ss_pred CCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 461 ITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 461 ~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
...+..+ .||+.|++|+.++ |+.|.+|.-.
T Consensus 256 ~~~~w~v-SWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 256 PDVVWRV-SWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcceEEE-EEeccccEEEEecCCcEEEEEEeC
Confidence 2556666 8999999999987 9999999864
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=187.39 Aligned_cols=299 Identities=16% Similarity=0.198 Sum_probs=226.4
Q ss_pred eeeccCCCcccccccccccc-CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 102 FLCKMPGHTTMSCPHRVATE-YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
+...+.||...+-....... ..+.+++.+.+..+|.+ ....|...+.||.+.|+||.|++
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~-------------------Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSL-------------------ESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEee-------------------ccccceeeecccccceeeEEecc
Confidence 34566888866555444433 34455667777777753 34556778999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeC------CC---------------------------------CceeEEecccCCCceEEEE
Q 009022 181 TNNHILLSGDKKGQVGVWDF------YK---------------------------------VSEKIVYGNIHSCIVNNIR 221 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~------~~---------------------------------~~~~~~~~~~~~~~v~~~~ 221 (546)
.+ .++++++.|++..||.. .. -..+.....+|.+.|.+..
T Consensus 201 s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 201 SG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99 79999999999999972 11 0011122267999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009022 222 FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 301 (546)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 301 (546)
|... +..+++++.|.+..+||++++..+..+..|.. ..+.++-+|..+++++++.|.+.++||++. .+
T Consensus 280 WL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~---------ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI 347 (481)
T KOG0300|consen 280 WLAG-GQQMVTASWDRTANLWDVETGEVVNILTGHDS---------ELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AI 347 (481)
T ss_pred hhcC-cceeeeeeccccceeeeeccCceeccccCcch---------hccccccCCcceEEEEeccCceeEeccchh--hc
Confidence 9988 99999999999999999999999998887765 367777899999999999999999999994 34
Q ss_pred cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 302 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
.....+.+|...|+++.|.- +..+++|+.|.+|++||++++.. .+..+...++++.++.+..+.+|+.--.+..|+
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRs--plATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRS--PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccC--cceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 44556777888999999984 67799999999999999998766 455556678899999998888999998899999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
+||++..++....+. ....+.....+++|....+... .++++-|..+.=|++.+.
T Consensus 424 lfDlnG~RlaRlPrt----sRqgHrRMV~c~AW~eehp~cn----------LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 424 LFDLNGNRLARLPRT----SRQGHRRMVTCCAWLEEHPACN----------LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEecCCCccccCCcc----cccccceeeeeeeccccCcccc----------cccccccceeeeeEeccc
Confidence 999987665432221 1112222335778877643322 225667788888887653
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.5e-25 Score=203.67 Aligned_cols=242 Identities=19% Similarity=0.310 Sum_probs=198.1
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
+...|+++.|+++| .+|++|..+|.|.|||....+....+...|...|-+++|. ...+.+|+.++.|..+|++..+
T Consensus 216 ~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 216 GEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecch
Confidence 47899999999999 7999999999999999999888888844499999999998 5699999999999999999887
Q ss_pred eeee-eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.... +..|.. .|..+.|++++.++|+|+.|+.+.|||.....+ .+....|...|.+++|+|....+|
T Consensus 292 ~~~~~~~~H~q---------eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p---~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 292 HVVSTLQGHRQ---------EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP---KFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred hhhhhhhcccc---------eeeeeEECCCCCeeccCCCccceEeccCCCccc---cEEEeccceeeeEeeeCCCccCce
Confidence 6655 333333 599999999999999999999999999955443 335667778999999999999999
Q ss_pred EEEe--CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 328 LSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 328 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
|+|+ .|+.|++||..++.. +........|.+|.|++..+.|+++. .++.|.||+..+.+.. ..+
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~---i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------~~l 427 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGAR---IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------AEL 427 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcE---ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---------eee
Confidence 9986 699999999986544 44445677899999999887776654 3678999999874432 122
Q ss_pred cccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 404 NRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 404 ~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
.+|. ..+.++|+|+ |..++ +|+.|.++++|++-..
T Consensus 428 ~gH~~RVl~la~SPd---------g~~i~---t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPD---------GETIV---TGAADETLRFWNLFDE 463 (484)
T ss_pred cCCcceeEEEEECCC---------CCEEE---EecccCcEEeccccCC
Confidence 2222 2467899999 88888 8999999999998764
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-25 Score=201.88 Aligned_cols=292 Identities=14% Similarity=0.203 Sum_probs=225.0
Q ss_pred CCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE---Eec-ccCCCceEEEEEecCCCCEEEEE
Q 009022 158 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VYG-NIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 158 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
|.+......-.|..-|.++..+... +.++||+. |.|+|||+....... .+. .....-|+++...|+ ++.|++|
T Consensus 407 Prharq~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivG 483 (705)
T KOG0639|consen 407 PRHARQINTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVG 483 (705)
T ss_pred CchHHhhhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEec
Confidence 3344334455699899999999887 78999996 679999997643211 111 124567899999999 9999999
Q ss_pred eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 234 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
+.-.++.|||+..........+.... ..+++++.+||.+..++++.||.|.|||+++...+. .+.+|...
T Consensus 484 GeastlsiWDLAapTprikaeltssa-------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---qfqGhtDG 553 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSA-------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDG 553 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcc-------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---cccCCCCC
Confidence 99999999999876654433332211 147889999999999999999999999999876554 45677778
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
+.||.+++ ++..|-+|+.|++|+.||+++... +......+.|.++..+|++.+|++|-.++.+.|......+
T Consensus 554 ascIdis~-dGtklWTGGlDntvRcWDlregrq---lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---- 625 (705)
T KOG0639|consen 554 ASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQ---LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---- 625 (705)
T ss_pred ceeEEecC-CCceeecCCCccceeehhhhhhhh---hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----
Confidence 99999999 999999999999999999986554 3333457789999999999999999999999887765322
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
+..++ .+....+++.|.+. |++++ +.+.|+-+..|.+.-|..+.... ....|.++ .+|.|
T Consensus 626 -kyqlh----lheScVLSlKFa~c---------Gkwfv---StGkDnlLnawrtPyGasiFqsk--E~SsVlsC-DIS~d 685 (705)
T KOG0639|consen 626 -KYQLH----LHESCVLSLKFAYC---------GKWFV---STGKDNLLNAWRTPYGASIFQSK--ESSSVLSC-DISFD 685 (705)
T ss_pred -ceeec----ccccEEEEEEeccc---------Cceee---ecCchhhhhhccCccccceeecc--ccCcceee-eeccC
Confidence 11111 12223356777776 88888 88899999999999998876654 33667777 89999
Q ss_pred CcEEEEec-CCcEEEEcC
Q 009022 474 DDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 474 ~~~l~sgs-dg~i~vwd~ 490 (546)
.+||+||+ |....||.+
T Consensus 686 dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 686 DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceEEEecCCCcceEEEEE
Confidence 99999999 988888865
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=207.52 Aligned_cols=245 Identities=19% Similarity=0.166 Sum_probs=197.9
Q ss_pred CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCC
Q 009022 122 YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY 201 (546)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~ 201 (546)
..+.+++++..+..|........ |...++..+..|.+.|+.+....++ +.|++++.|-+|++|+..
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAH 103 (735)
T ss_pred ceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecc
Confidence 34889999999999976544432 2223557789999999999999999 689999999999999998
Q ss_pred CC--ceeEEecccCCCceEEEEE-ecCCCCEEEEEeCCCeEEEEECCCCce--eeeeecCCCCCCCCCcccceEEEEecC
Q 009022 202 KV--SEKIVYGNIHSCIVNNIRF-NPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINP 276 (546)
Q Consensus 202 ~~--~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 276 (546)
.. .+...+ ..|..-|.|+++ .++ ..++++|+.|+.|.+||+.++.. +..+..-...-.+..+...|++++.++
T Consensus 104 ~~~~~c~sti-r~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 104 KDNTFCMSTI-RTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cCcchhHhhh-hcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 76 344555 689999999999 566 88999999999999999998833 322222111111113344699999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCC
Q 009022 277 EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK 356 (546)
Q Consensus 277 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 356 (546)
.|..|++|+..+.|++||.++.+... .+.+|...|.++..++ +|..+++++.||+|++||+....+...+ ..|.
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~--~vH~ 255 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATY--IVHK 255 (735)
T ss_pred cceEEEecCcccceEEecccccccee---eeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeE--Eecc
Confidence 99999999999999999999987655 4457777999999999 9999999999999999999765553332 2588
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
..|.++..+|+-.++++|+.||.|..=|+++.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 88999999999999999999999999999874
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.9e-25 Score=203.93 Aligned_cols=282 Identities=14% Similarity=0.169 Sum_probs=215.6
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE-EecccCCCceEE-EEEecCCCCEEEEEeCCC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNN-IRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg 237 (546)
....+.+.||...|..+++.+.. .+++++.||++++|+-...+... ....+|.+.|.. +++.+..+..|++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 34457899999999999988765 69999999999999986655444 333567777777 888865366799999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
.|.+|.+.+..++..+..|.. .|++++...++. +++|+.|.++++|-...... ...+|...|.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~s---------nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv 146 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKS---------NVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----SLQGHTASVWAV 146 (745)
T ss_pred eEEEEecCCCCchhhhhcccc---------ceeeeecCCcCc-eEecccccceEEecchhhhc-----ccCCcchheeee
Confidence 999999999999999988776 488888877777 99999999999997765332 256777799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcc
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
+..| .. .+++|+.|.+|++|.-. ..+..+ +|...|..+++-+++ .|++++.||.|++|++ +|.++..
T Consensus 147 ~~l~-e~-~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~--- 214 (745)
T KOG0301|consen 147 ASLP-EN-TYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE--- 214 (745)
T ss_pred eecC-CC-cEEeccCcceeeeccCC-----chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee---
Confidence 9998 44 89999999999999863 344444 899999999998764 4889999999999999 4444221
Q ss_pred eeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcE
Q 009022 397 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 476 (546)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~ 476 (546)
.+. +....+++...+. +..++ +.+.|++++||+.. .+.+.+..+. ..++++ .+-++|.+
T Consensus 215 ---~~g--htn~vYsis~~~~---------~~~Iv---s~gEDrtlriW~~~--e~~q~I~lPt-tsiWsa-~~L~NgDI 273 (745)
T KOG0301|consen 215 ---MHG--HTNFVYSISMALS---------DGLIV---STGEDRTLRIWKKD--ECVQVITLPT-TSIWSA-KVLLNGDI 273 (745)
T ss_pred ---eec--cceEEEEEEecCC---------CCeEE---EecCCceEEEeecC--ceEEEEecCc-cceEEE-EEeeCCCE
Confidence 111 1111233433332 34444 78899999999986 6666665444 566666 66678888
Q ss_pred EEEecCCcEEEEcCC
Q 009022 477 LASGSSRSIFIWRPK 491 (546)
Q Consensus 477 l~sgsdg~i~vwd~~ 491 (546)
++.||||.||||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 877789999999876
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=203.26 Aligned_cols=297 Identities=17% Similarity=0.263 Sum_probs=226.1
Q ss_pred eeccccCCCeEEEEEcCCC----------CcEEEEEcCCCcEEEEeCCCCceeEEec-----------------------
Q 009022 164 AVIRYHSRRVTCLEFHPTN----------NHILLSGDKKGQVGVWDFYKVSEKIVYG----------------------- 210 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------- 210 (546)
..+--|...|+.+.--|-+ +..++|++.|++||+|++.....-..+.
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3444577777777655411 1258999999999999986521100000
Q ss_pred -------------ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-
Q 009022 211 -------------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP- 276 (546)
Q Consensus 211 -------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 276 (546)
......+++++.+|+ +.+|++|..-|.|++|++..-.....+..|.. .|.|+.|+.
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes---------EilcLeyS~p 512 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHES---------EILCLEYSFP 512 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccc---------eeEEEeecCc
Confidence 013446999999999 99999999999999999998888777776654 499999975
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCCCceeee
Q 009022 277 --EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLCD 352 (546)
Q Consensus 277 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 352 (546)
..++|++++.|..|++||+...-.+.. ....|...|+++.|.- ++ ..+++++.|..|.+--.+....+..+..
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l~q--tld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDLVQ--TLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccchhh--hhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccc
Confidence 357899999999999999987654433 3456677999999987 44 5788888898876543332222222221
Q ss_pred c---CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeee
Q 009022 353 L---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 429 (546)
Q Consensus 353 ~---~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~ 429 (546)
. -....++.|+..|+.+++++++.|..|+||++.+|++..... .........+.+...|. |-|
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-----gs~~~eG~lIKv~lDPS---------giY 655 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-----GSRDHEGDLIKVILDPS---------GIY 655 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-----ccccCCCceEEEEECCC---------ccE
Confidence 1 124568999999999999999999999999999998754322 12222344568888887 899
Q ss_pred eeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 430 ISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 430 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
++ +...|.++.++|..+|+++.+..||. ..++.+ .|.+|-+.|++.+ ||.|.||.+..
T Consensus 656 ~a---tScsdktl~~~Df~sgEcvA~m~GHs-E~VTG~-kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 656 LA---TSCSDKTLCFVDFVSGECVAQMTGHS-EAVTGV-KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EE---EeecCCceEEEEeccchhhhhhcCcc-hheeee-eecccchhheeecCCceEEEEECch
Confidence 99 88999999999999999999999987 788888 8999999999988 99999999865
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=187.63 Aligned_cols=271 Identities=21% Similarity=0.243 Sum_probs=203.2
Q ss_pred eeccCCCcccc-ccccccccCCccccCCCCCCCCchhhhhcccCC-CCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMS-CPHRVATEYGVTPASHRNAGNPVEYVFERQLRP-NMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
.+.+..|.... +..+.+.+..+++++.+..+++.+... .+.. ....+........+..+++|-.|.+.|++|.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildver--mlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVER--MLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhh--hhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34556777544 444444556677778888888776431 1111 1111122222233566889999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCC
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG 259 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 259 (546)
.. .+|++|+.|++|+++|+........+. .....+|.++.|+|. |.+|+.|....++++||+.+-++..... +..
T Consensus 183 re-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~- 258 (430)
T KOG0640|consen 183 RE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDD- 258 (430)
T ss_pred hh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecC-ccc-
Confidence 98 799999999999999998643322211 125668999999999 9999999999999999999988765443 211
Q ss_pred CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 260 WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
.+...|+++.+++.+++.++++.||.|++||--..+.+..+...|. +..|++..|.. ++.++++.+.|..+++|
T Consensus 259 ----qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcSa~Ftk-n~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 259 ----QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCSAVFTK-NGKYILSSGKDSTVKLW 332 (430)
T ss_pred ----ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-CceeeeEEEcc-CCeEEeecCCcceeeee
Confidence 2223699999999999999999999999999888777665544444 34799999999 99999999999999999
Q ss_pred ECCCCCC-----------------------------------------------CceeeecCCCCcEEEEEEeCCCCEEE
Q 009022 340 DIRRLEA-----------------------------------------------GSSLCDLPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 340 d~~~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~ 372 (546)
.+.++.. ...+..++|.+.+..+.-+|.+.-|+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 9865432 11222347889999999999999999
Q ss_pred EEeCCCcEEEEEC
Q 009022 373 TTSQDNRLRIWDS 385 (546)
Q Consensus 373 s~s~dg~i~vwd~ 385 (546)
+|+.|-.+++|--
T Consensus 413 TcsdD~raRFWyr 425 (430)
T KOG0640|consen 413 TCSDDFRARFWYR 425 (430)
T ss_pred eecccceeeeeee
Confidence 9999999999964
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=204.23 Aligned_cols=280 Identities=14% Similarity=0.226 Sum_probs=215.5
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
.+|+..-+.|+|.|+| .+|++++.||.|++|+.... ..+..+ ..+...|.+++.. .++|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY---SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence 4699999999999999 58999999999999998776 444444 3377888888765 5699999999999999998
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
.+..-..+..-. .++.+++|+.+|.++|.|+.|-.|++.++....... ...+|.++|.++.|+| +++
T Consensus 85 s~~~~~iL~Rft---------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p-~~~ 151 (933)
T KOG1274|consen 85 SGEEDTILARFT---------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDP-KGN 151 (933)
T ss_pred CCCccceeeeee---------ccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcC-CCC
Confidence 876542221111 158999999999999999999999999988765443 5567778999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeec------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
+||+.+.||.|++|++.++.....+..+ .....+..++|+|++..|++.+.|++|++|+...+......+.-.
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~- 230 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL- 230 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-
Confidence 9999999999999999876554443322 124567889999998888888999999999998877544322111
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
.+.....+.|+|. |+|+| ++..+|.|.|||..+-.. ......|+++ +|.|+.+-|-.
T Consensus 231 -----~ss~~~~~~wsPn---------G~YiA---As~~~g~I~vWnv~t~~~-----~~~~~~Vc~~-aw~p~~n~it~ 287 (933)
T KOG1274|consen 231 -----SSSKFSDLQWSPN---------GKYIA---ASTLDGQILVWNVDTHER-----HEFKRAVCCE-AWKPNANAITL 287 (933)
T ss_pred -----cccceEEEEEcCC---------CcEEe---eeccCCcEEEEecccchh-----ccccceeEEE-ecCCCCCeeEE
Confidence 1111347899999 99999 899999999999998222 1223566666 99999886665
Q ss_pred ec-CCcEEEE
Q 009022 480 GS-SRSIFIW 488 (546)
Q Consensus 480 gs-dg~i~vw 488 (546)
-. -|...+|
T Consensus 288 ~~~~g~~~~~ 297 (933)
T KOG1274|consen 288 ITALGTLGVS 297 (933)
T ss_pred EeeccccccC
Confidence 44 4554444
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=202.70 Aligned_cols=315 Identities=17% Similarity=0.181 Sum_probs=226.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--ecccCCCceEEEEEecC----------CCCEEEEEeCCCeE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YGNIHSCIVNNIRFNPT----------NDGTVYAASSDGTV 239 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~----------~~~~l~s~~~dg~i 239 (546)
...++.|.+.. ..|.+.-.|..|+|||+.....+.. ....|...|+.+.-.|- ....|++++.|++|
T Consensus 326 D~IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 326 DAIACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ceeEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 34577899988 5788888999999999986433221 11348888888877662 13569999999999
Q ss_pred EEEECCCCceeeeee---cC-------------------------CCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 240 SCTDLETGLALSLMN---VN-------------------------PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~---~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
++|++..+..-..+. +. ............+.+++.+|+|++|++|..-|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999998632221110 00 00011123334689999999999999999999999
Q ss_pred EEeCCCCCCCcceEEeecCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCC
Q 009022 292 LVDARTNSRSGEAILIHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG 368 (546)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~ 368 (546)
+|++....... ....|...|.|+.|+.. ...+||+++.|..|.|||+... ...+..+ +|...|+++.|.-+|
T Consensus 485 Vy~Lq~l~~~~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 485 VYDLQELEYTC---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred EEEehhhhhhh---heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecC
Confidence 99998755433 45667779999999852 2468999999999999999632 2233444 799999999999877
Q ss_pred --CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 369 --SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 369 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
..+++++.|..|.+--.+.. ...+..........+.+.+.+...|. .++++ +++.|..|+||+
T Consensus 560 ln~~MiscGADksimFr~~qk~---~~g~~f~r~t~t~~ktTlYDm~Vdp~---------~k~v~---t~cQDrnirif~ 624 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKA---SSGRLFPRHTQTLSKTTLYDMAVDPT---------SKLVV---TVCQDRNIRIFD 624 (1080)
T ss_pred CceEEEeccCchhhheehhccc---cCceeccccccccccceEEEeeeCCC---------cceEE---EEecccceEEEe
Confidence 77899999987654322210 00011111222233444456666776 56666 789999999999
Q ss_pred CCchhhhHhhcCCCC--CcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 447 ITTGQLVAEVMDPNI--TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~--~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
+.+|+.++.|.+.+. +...-+ ...|.|.|||+.. |.+|.++|..+|+++.++.+|..++..
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv-~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKV-ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ccccceeeeecccccCCCceEEE-EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee
Confidence 999999999987542 334444 6899999999977 999999999999999999999987543
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.4e-23 Score=195.53 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=199.3
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
+++++++.|+.|++||+.+++....+. .+ ..+.+++|+|+ +..+ ++++.++.|++||+.+++....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----- 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----- 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCC-----
Confidence 578999999999999999887766663 34 34678999999 6665 667788999999999887766543321
Q ss_pred CCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-FARIWD 340 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~iwd 340 (546)
.+..++|+|+++.++++ ..++.|++||+.+...... ......+.+++|+| ++.++++++.++ .+.+||
T Consensus 74 -----~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~----~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 74 -----DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE----IPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFID 143 (300)
T ss_pred -----CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE----eeCCCCcceEEECC-CCCEEEEEecCCCeEEEEe
Confidence 24568899999987665 5689999999987543321 12223568899999 999998888765 567789
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 341 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
..+... +........+.+++|+|++++|+++ ..++.|++||+.+++......... .........+..+.|+|+
T Consensus 144 ~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~d-- 217 (300)
T TIGR03866 144 TKTYEI---VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-PGVHPEAVQPVGIKLTKD-- 217 (300)
T ss_pred CCCCeE---EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-cccccccCCccceEECCC--
Confidence 865432 2222223346789999999988654 468999999999876533211000 000011223346778887
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEe-c-CCcEEEEcCCCCCccc
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG-S-SRSIFIWRPKEKSELV 497 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sg-s-dg~i~vwd~~~~~~~~ 497 (546)
|+++.. ....++.|.+||+.+++.+..+..+ ..+.++ +|+|+|.+|+++ + +|.|+|||+.+++.+.
T Consensus 218 -------g~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 218 -------GKTAFV--ALGPANRVAVVDAKTYEVLDYLLVG--QRVWQL-AFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred -------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEeC--CCcceE-EECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 443221 2334567999999988876554322 346666 899999999886 4 8999999999999988
Q ss_pred eeeccce
Q 009022 498 EQKEEMK 504 (546)
Q Consensus 498 ~~~~~~~ 504 (546)
++.....
T Consensus 286 ~~~~~~~ 292 (300)
T TIGR03866 286 SIKVGRL 292 (300)
T ss_pred EEEcccc
Confidence 8875543
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.4e-25 Score=205.12 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=204.7
Q ss_pred cCCCeE---EEEEcCCCCcEEEEEcCCCcEEEEeCCCCce------eEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 169 HSRRVT---CLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 169 h~~~V~---~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
|...|. ++..+..+.++|+|||.||.|++|++..... ...+ ..|...|+.+....+ ++.|++++.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~-~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN-GKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence 555565 5666666668999999999999999875332 2333 679999999999888 8899999999999
Q ss_pred EEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCC--Ccc-----eEE-ee
Q 009022 240 SCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDI-NPEKGVVLVADNFGFLYLVDARTNSR--SGE-----AIL-IH 308 (546)
Q Consensus 240 ~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~-----~~~-~~ 308 (546)
++|+...+ -++..+..|.. .|.|+++ .++...+|+|+-|+.|.+||+.++.. ... ... ..
T Consensus 98 K~W~~~~~~~~c~stir~H~D---------YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKD---------YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred EEeecccCcchhHhhhhcccc---------hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 99999877 45555555444 4899999 78889999999999999999997632 110 011 11
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
++...|++++.++ .+..|++|+..+.|++||.++.+. .+...+|...|..+..+++|..++++|.||+|++||+..+
T Consensus 169 G~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CCccceeeeecCC-cceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 4456899999999 889999999999999999997665 4444599999999999999999999999999999999877
Q ss_pred CCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccccee
Q 009022 389 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 468 (546)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~ 468 (546)
+++... ..+. -..+.+..+|. +...|+|+.|+.|..=|+++......+.. ....+..+
T Consensus 246 rCl~T~----~vH~----e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l- 303 (735)
T KOG0308|consen 246 RCLATY----IVHK----EGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKL- 303 (735)
T ss_pred ceeeeE----Eecc----CceEEEeeCCC------------cceEEecCCCCcEEecccCCchhheEeec-CCCchhhh-
Confidence 764321 1111 00123333332 12234899999999999987533222211 11233333
Q ss_pred eecCCC-cEEEEecCCcEEEEcCC
Q 009022 469 KLHPRD-DVLASGSSRSIFIWRPK 491 (546)
Q Consensus 469 ~~s~~~-~~l~sgsdg~i~vwd~~ 491 (546)
..+... .+-++..|+.|+-|...
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hhccccCCceeeeccccceecCCc
Confidence 233222 22333337888888643
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=204.74 Aligned_cols=252 Identities=13% Similarity=0.185 Sum_probs=201.0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC-ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 289 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 289 (546)
..|....+.|+|.|+ +.+|++++.||.|++|+.... .....+.... ..|.+++. .+.+|++|+.++.
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---------~~v~~ia~--~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISG---------ELVSSIAC--YSNHFLTGSEQNT 77 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccC---------ceeEEEee--cccceEEeeccce
Confidence 469999999999999 889999999999999987655 2222221111 13555544 5569999999999
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
|.+|.+..+.....+.++ ..++++++++. ++.++|.|+.|-.|++.++..... .....+|..+|.++.|+|++.
T Consensus 78 v~~y~fps~~~~~iL~Rf---tlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARF---TLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred EEEeeCCCCCccceeeee---eccceEEEEec-CCcEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcCCCC
Confidence 999999887765433232 23799999999 999999999999999999976444 444458999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+||+.+.||.|++|++.++.+......+.....+.......+++|+|+. |.+++ -..++.|++|+..+
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~--------g~la~----~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG--------GTLAV----PPVDNTVKVYSRKG 219 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC--------CeEEe----eccCCeEEEEccCC
Confidence 9999999999999999999887766666666666544445679999995 44443 56789999999999
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
+.....+.........++++|+|+|.|||+++ +|.|.|||+++
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999988766555444459999999999999 99999999995
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.1e-24 Score=214.10 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=226.2
Q ss_pred ccCccceeee--ehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCc-cccccccccccCCccccCCCCCCCCchh
Q 009022 62 RKGKAPITIS--LKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEY 138 (546)
Q Consensus 62 ~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (546)
+.+..++|+. +|...++|+......... ......+..+|.+..|. .+.|..+.+.+..+++++.+..+.+|++
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~----~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKE----EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhh----hhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4455666766 676677777444331100 00011456678889999 5666667677789999999988888986
Q ss_pred hhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceE
Q 009022 139 VFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN 218 (546)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 218 (546)
.. ......-...........-.++.+|.+|...|..++|+|++ .+|++++.|++|.||+..+.+....+ .+|.+.|.
T Consensus 99 ~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VK 175 (942)
T KOG0973|consen 99 AE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVK 175 (942)
T ss_pred cc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee-eccccccc
Confidence 64 11000000001122233355778999999999999999998 89999999999999999999666666 89999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe----CCCcEEEEe
Q 009022 219 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVD 294 (546)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d 294 (546)
.+.|.|- |++|++-+.|++|++|++..-.....+..+.... .....+..+.|+|||.+|++.. .-..+.|.+
T Consensus 176 Gvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 176 GVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhC---CCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 9999999 9999999999999999987766666555443321 1122478899999999999963 223666666
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCC----C--------CC----EEEEEeCCCeEEEEECCCCCCCceeeecCCCCc
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPI----Q--------PE----LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRV 358 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~----~--------~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 358 (546)
-.+.+. -..+-+|..++.++.|+|. . ++ .+|+|+.|++|.||.....++...+..+ ....
T Consensus 252 R~tWk~---~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-f~~S 327 (942)
T KOG0973|consen 252 RGTWKV---DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-FNKS 327 (942)
T ss_pred cCCcee---eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh-hcCc
Confidence 544332 2245566779999999982 1 11 6889999999999998665553333332 4567
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 359 VNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 359 v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|..++|+|+|..|+++|.||+|.++.+...+
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999999999987644
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.4e-25 Score=207.85 Aligned_cols=291 Identities=13% Similarity=0.207 Sum_probs=206.2
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--eEEec-c---cCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYG-N---IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
....+|+.+++-. -++.++. ..++||.+..... ...+. . .-...+..|+|+....++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~-qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDIN-QIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcc-eeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3566777888874 4666664 3788888765321 11111 1 111245678888655889999999999999999
Q ss_pred CC---CceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 245 ET---GLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
.. .+.+..+.-|.. .++++.|++ ...+|++|+.||.|++||++..+..... ......|..++|+
T Consensus 118 nk~~rnk~l~~f~EH~R---------s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---~~nSESiRDV~fs 185 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHER---------SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---RSNSESIRDVKFS 185 (839)
T ss_pred CccccchhhhHhhhhcc---------ceeeeeeccCCccEEEecCCCceEEEEeeecccccccc---cccchhhhceeec
Confidence 86 333334444332 599999988 5678999999999999999987655432 3355589999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
|..++.|+++...|.|++||+|.... ....+ .|.++|.|+.|+|++.+||||+.|+.|+||++.+.+...
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~------- 256 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP------- 256 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-------
Confidence 98899999999999999999996443 44333 899999999999999999999999999999998755421
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC-CCcEEE
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RDDVLA 478 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~-~~~~l~ 478 (546)
.+.++.....-++.|-|... +.....+-..|..|+|||++..-..+.....|...+..+ +|.. +-..|.
T Consensus 257 ~~tInTiapv~rVkWRP~~~---------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i-~W~~~d~~~l~ 326 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARS---------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI-AWDSGDRINLW 326 (839)
T ss_pred eeEEeecceeeeeeeccCcc---------chhhhhhccccceEEEEeeccccccceeeeccCccccce-eccCCCceeeE
Confidence 11112222224789999853 111112445678899999987654443333343667766 7854 456788
Q ss_pred Eec-CCcEEEEcCCCCC
Q 009022 479 SGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 479 sgs-dg~i~vwd~~~~~ 494 (546)
+++ ||+|..-.+.++.
T Consensus 327 s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eecCccHHHHhhhhccc
Confidence 889 9999877766553
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.8e-24 Score=179.97 Aligned_cols=247 Identities=15% Similarity=0.195 Sum_probs=188.5
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCC--EEEEEeCCC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG--TVYAASSDG 237 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg 237 (546)
......+..|.++|++++.+ + .++|+|+.|-+|+|||+........+ ..|.+.|+++.|.+. .. .|++|+.||
T Consensus 33 l~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~-~S~shLlS~sdDG 107 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPP-LSKSHLLSGSDDG 107 (362)
T ss_pred eeccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCC-cchhheeeecCCC
Confidence 33445678899999999996 5 79999999999999999998887777 579999999999986 43 899999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
.|.+|+......+..++.|.. .|+.++++|.+++.++.+.|+.+++|++-+++..... .+. + ..+.+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~---------~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L~-~--~at~v 174 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKG---------QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-NLK-N--KATLV 174 (362)
T ss_pred cEEEEEcCCeEEeeeeccccc---------ccceeEecCCCceEEEEcCCceeeeehhhcCccceee-ccC-C--cceee
Confidence 999999999988888877655 4999999999999999999999999999887654322 221 1 34559
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
.|+| .|.+|+.++.+ .|-+|.+.+.. .+.....+..+.|+.|. ++.+|++|..++.|.+||.......
T Consensus 175 ~w~~-~Gd~F~v~~~~-~i~i~q~d~A~---v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~------ 242 (362)
T KOG0294|consen 175 SWSP-QGDHFVVSGRN-KIDIYQLDNAS---VFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL------ 242 (362)
T ss_pred EEcC-CCCEEEEEecc-EEEEEecccHh---Hhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccc------
Confidence 9999 88888887754 58899886433 33333334556777775 7788999999999999998764321
Q ss_pred eeccCCcccCCc---eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 398 VHSHDFNRHLTP---FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 398 ~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
..+..|... +...-.|. +.|++ +.+.||.|+|||+....
T Consensus 243 ---~~~~AH~~RVK~i~~~~~~~---------~~~lv---TaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 243 ---TEFLAHENRVKDIASYTNPE---------HEYLV---TASSDGFIKVWDIDMET 284 (362)
T ss_pred ---eeeecchhheeeeEEEecCC---------ceEEE---EeccCceEEEEEccccc
Confidence 111222111 11122233 56777 89999999999997654
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4e-24 Score=180.27 Aligned_cols=263 Identities=14% Similarity=0.143 Sum_probs=188.7
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 289 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 289 (546)
......|.+|+|+|....++++++.||+|++|+++. |....... .....+|.+++|+.+|..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~--------~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ--------QSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh--------hccCCCeEEEEEccCCceEEeeccCCc
Confidence 556788999999996467777999999999999986 33332211 122236999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE--LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 367 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~ 367 (546)
+++||+.+++.. ....|.++|..+.|-+ ... .|++|+.|.+|++||+|...+ +..+.....++++.. -
T Consensus 96 ~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p---v~t~~LPeRvYa~Dv--~ 165 (347)
T KOG0647|consen 96 AKLWDLASGQVS----QVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP---VATLQLPERVYAADV--L 165 (347)
T ss_pred eEEEEccCCCee----eeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe---eeeeeccceeeehhc--c
Confidence 999999997533 4556777999999987 444 899999999999999986444 444455677777766 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 368 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
..+++++..++.|.+|+++++....... .+ .+.-.. -+++..++. ...+ -|+-.|.+.|..+
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~---~S-pLk~Q~--R~va~f~d~---------~~~a---lGsiEGrv~iq~i 227 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRI---ES-PLKWQT--RCVACFQDK---------DGFA---LGSIEGRVAIQYI 227 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhh---cC-ccccee--eEEEEEecC---------CceE---eeeecceEEEEec
Confidence 5688889999999999997653211000 00 000000 123333332 1112 4777888888888
Q ss_pred Cch--hhhHhhcCCC--------CCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEeec
Q 009022 448 TTG--QLVAEVMDPN--------ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGK 510 (546)
Q Consensus 448 ~~~--~~~~~~~~~~--------~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 510 (546)
..+ +.-.+|..|. ...|..| +|+|.-..|+|++ ||++.+||-+....+.+...+..+|.|..
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi-~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSI-AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecce-EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence 776 3333444443 2234455 8999988999977 99999999999999999888888877754
No 121
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=183.85 Aligned_cols=332 Identities=17% Similarity=0.251 Sum_probs=235.4
Q ss_pred CCCCchhhhhcccCCCCCCCCCC--ccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC------C
Q 009022 132 AGNPVEYVFERQLRPNMTYMKPA--HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------V 203 (546)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~------~ 203 (546)
..++..++.++.+++....++.. ..+.-..|.+-+.+|.+.|++|.|+.++ ++|++|+.|..++||++.. .
T Consensus 16 ~~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~ 94 (609)
T KOG4227|consen 16 QFKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTP 94 (609)
T ss_pred cceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCC
Confidence 34444555555555443332221 1222345677889999999999999998 8999999999999999853 3
Q ss_pred ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE
Q 009022 204 SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 283 (546)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 283 (546)
+.+......|...|.|++|... +..|++|..+++|.+.|+.+.+.+..+..... ...|+.+..+|..+.|++
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~-------~~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTVIKHDIETKQSIYVANENNN-------RGDVYHMDQHPTDNTLIV 166 (609)
T ss_pred CCceeccCccccceEEEEEccC-CeeEecCCCcceeEeeecccceeeeeecccCc-------ccceeecccCCCCceEEE
Confidence 4444444567789999999988 89999999999999999999988877644321 235999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec----C--C-C
Q 009022 284 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL----P--H-K 356 (546)
Q Consensus 284 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~--~-~ 356 (546)
.+.++.|.+||.+.......+......+.....+.|+|..+.+|++.+..+-+.+||.+.... .+... + . .
T Consensus 167 ~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--~~~~~~~~~~L~~~~ 244 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR--PVYQRSMFKGLPQEN 244 (609)
T ss_pred EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc--hHHhhhccccCcccc
Confidence 999999999999987755555555555667889999998889999999999999999986443 22111 1 1 2
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeee-eeecCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY-ISENYN 435 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~-~~~~~~ 435 (546)
...+++.|+|+|..|++--....-.+||+.+.++.. +...+..++.....+ ...+.+.+.+ ++ +
T Consensus 245 ~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V----~k~D~N~~GY~N~~T--------~KS~~F~~D~~v~---t 309 (609)
T KOG4227|consen 245 TEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV----LKSDHNPNGYCNIKT--------IKSMTFIDDYTVA---T 309 (609)
T ss_pred hhhhheeeCCCCCeehhhhccCCCEEeeeeccccee----EeccCCCCcceeeee--------eeeeeeecceeee---c
Confidence 334778999999999988888888889987655411 000111111110000 0111122322 33 8
Q ss_pred CCcCcceEEEECCch----------h-------------hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 436 GAALHPIDFIDITTG----------Q-------------LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 436 g~~d~~i~iwd~~~~----------~-------------~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
|+.+-.|++|.+... . .+..+.+|. ..+..| .|+|...+|++.+ ...++||...
T Consensus 310 GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQV-RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 310 GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQV-RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc-ccccce-eecCCcceEeccchhhheeccccc
Confidence 999999999987531 1 122344554 566666 8999999999988 9999999743
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.1e-25 Score=206.34 Aligned_cols=202 Identities=23% Similarity=0.390 Sum_probs=166.4
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
.+..+.|+.-..++|||++..|.|.+||+.. ...+..+ ..|...++++.|++....+|++|+.||.|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 4556788865557999999999999999987 3333344 78999999999999989999999999999999999988
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
...++..... .|..+.|+| .+.+|+++...|.+.+||++....... .+..|.++|.|+.|+| +..+|
T Consensus 168 S~~t~~~nSE---------SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--k~~AH~GpV~c~nwhP-nr~~l 235 (839)
T KOG0269|consen 168 SKSTFRSNSE---------SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--KLTAHNGPVLCLNWHP-NREWL 235 (839)
T ss_pred ccccccccch---------hhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--HhhcccCceEEEeecC-CCcee
Confidence 8877765433 489999999 478899999999999999998776543 4556777999999999 99999
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeC--CCcEEEEECCC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQ--DNRLRIWDSIF 387 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~--dg~i~vwd~~~ 387 (546)
|+||.|+.|+|||+...... .+.......+|.+|.|-| ...+|++++. |-.|+|||++.
T Consensus 236 ATGGRDK~vkiWd~t~~~~~-~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAK-PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred eecCCCccEEEEeccCCCcc-ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 99999999999999765443 333445678899999999 4556777765 77899999974
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=182.76 Aligned_cols=217 Identities=17% Similarity=0.235 Sum_probs=167.5
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--ecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
...+.++.+|.+.=++|+|||-..-.|+||..-+.|++|...++.-... ...+|+..|-.|+|+|.....|++|+.||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 3456789999999999999994323589999999999999887653221 22569999999999999889999999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
+|+|||++.+.....+... .+...|+.|+|+..-.+||+|+.+|.+.|||+++.+....+..+..|..+|++|
T Consensus 281 sIrIWDiRs~~~~~~~~~k-------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTK-------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI 353 (440)
T ss_pred eEEEEEecCCCccceeEee-------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence 9999999988433322221 111259999999998899999999999999999877665555666777799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCC----------------CceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcE
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEA----------------GSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRL 380 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i 380 (546)
.|+|.+...|++++.|.+|.|||+..... .+.+....-+..|..+.|++ ...+|++.+.|| +
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-f 432 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-F 432 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-e
Confidence 99998888999999999999999863221 11222222345688899999 456788888888 5
Q ss_pred EEEE
Q 009022 381 RIWD 384 (546)
Q Consensus 381 ~vwd 384 (546)
.||.
T Consensus 433 nVfk 436 (440)
T KOG0302|consen 433 NVFK 436 (440)
T ss_pred eEEE
Confidence 5553
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=187.78 Aligned_cols=276 Identities=13% Similarity=0.145 Sum_probs=199.5
Q ss_pred EEcCC-CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 188 SGDKK-GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 188 s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
+++.| .++.+||+.++.....+..+....-.++..-. +.+++++.. -..|.+|.+........... .
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~--~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---------~ 80 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN--NEYLLSAQLKRPLLHVWEILKKDQVVQYIV---------L 80 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc--hhheeeecccCccccccccCchhhhhhhcc---------c
Confidence 33444 45999999999888887533222222222221 346666554 45799999876554441111 1
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL- 344 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~- 344 (546)
+.++.+++-+|.|.+++.|+..|.|++|.+.++..+... ..|-..|+++.|+. ++.+|++|+.||.|.+|.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH---HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeec
Confidence 125999999999999999999999999999999876533 55555899999999 9999999999999999987421
Q ss_pred -----CCCceeeec-CCCCcEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecC
Q 009022 345 -----EAGSSLCDL-PHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 416 (546)
Q Consensus 345 -----~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 416 (546)
.....+..+ .|.-+|+.+...+ ...+|+|+|.|.++++||+..+.++. ...+...+ .+++.+|
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-------ti~fp~si--~av~lDp 227 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-------TITFPSSI--KAVALDP 227 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-------EEecCCcc--eeEEEcc
Confidence 123344444 7999999998876 35689999999999999999887632 22222222 2555566
Q ss_pred CCCCCceeEEeeeeeecCCCCcCcceEEEECCchh----------------hhHhhcCCCC-CcccceeeecCCCcEEEE
Q 009022 417 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----------------LVAEVMDPNI-TTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 417 ~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~----------------~~~~~~~~~~-~~i~~v~~~s~~~~~l~s 479 (546)
. ++.+. .|+.+|.|.+.++.... .+..+.+|.. ..|+++ +++.||.+|++
T Consensus 228 a---------e~~~y---iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL-ais~DgtlLlS 294 (476)
T KOG0646|consen 228 A---------ERVVY---IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL-AISTDGTLLLS 294 (476)
T ss_pred c---------ccEEE---ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE-EEecCccEEEe
Confidence 4 33333 79999999998775422 2334556653 478887 99999999999
Q ss_pred ec-CCcEEEEcCCCCCccceee
Q 009022 480 GS-SRSIFIWRPKEKSELVEQK 500 (546)
Q Consensus 480 gs-dg~i~vwd~~~~~~~~~~~ 500 (546)
|+ ||.|+|||+.+.++++++.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHh
Confidence 99 9999999999999988877
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=5.1e-23 Score=192.24 Aligned_cols=358 Identities=15% Similarity=0.148 Sum_probs=249.4
Q ss_pred eeeccCCCccccccccccc----cCCccccCCCCCCCCchhhhhcccCCCCCC--CCCCccCCCceee----------ee
Q 009022 102 FLCKMPGHTTMSCPHRVAT----EYGVTPASHRNAGNPVEYVFERQLRPNMTY--MKPAHVIPDQVNC----------AV 165 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------~~ 165 (546)
..+.+.||+..+....+.. ...++++++|..+++|.+............ .......|...+. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 3567899996544433332 346788899999999987654432211000 0001112221111 24
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--ec----ccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YG----NIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
+.||.+-|+++.|+|.+ ..|++++.|.++.||......-+.. .. .+.........|+|+ ++.+++-+..|..
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTGGF 340 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccCcE
Confidence 56999999999999999 6799999999999998876532211 11 234556889999999 8999999999999
Q ss_pred EEEECCCC-cee--eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CcceEEeecCCCcEE
Q 009022 240 SCTDLETG-LAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR-SGEAILIHRKGSKVV 315 (546)
Q Consensus 240 ~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~ 315 (546)
++|-.... ... ..+..|. ..|..++|.|.|.+|++.+.|.+-++|-.-..+. ...+-....|+..++
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~---------~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHV---------DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EEEeccCccceeecccccccc---------ccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence 99983221 111 1122222 2599999999999999999999999987652222 222333445666899
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCC--------------------------------CC-----------------
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRL--------------------------------EA----------------- 346 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~--------------------------------~~----------------- 346 (546)
|+++-+ ....|++|.....+|+|+.... +.
T Consensus 412 c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 412 CLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 999987 5778999999999999976310 00
Q ss_pred -------------------------CceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCCCCCCCcc
Q 009022 347 -------------------------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 347 -------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~ 396 (546)
+..-+.++|...|++++.+|+++++|+++... .|++|+..+......
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~--- 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE--- 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe---
Confidence 00011136788899999999999999998754 499999887654331
Q ss_pred eeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh----hHhhcCCCCCcccceeeecC
Q 009022 397 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL----VAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~v~~~s~ 472 (546)
-..+..+..+++|+|+ |+|+. +.+.|.++.+|....... ...+ ..|...|..+ .|+|
T Consensus 568 -----L~~HsLTVT~l~FSpd---------g~~LL---svsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdc-sW~p 628 (764)
T KOG1063|consen 568 -----LEGHSLTVTRLAFSPD---------GRYLL---SVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDC-SWSP 628 (764)
T ss_pred -----ecccceEEEEEEECCC---------CcEEE---EeecCceEEeeeeecccchhhhhccc-cccceEEEEc-ccCc
Confidence 1123344568999999 89998 899999999998854321 1223 3344777777 9999
Q ss_pred CCcEEEEec-CCcEEEEcCCCC
Q 009022 473 RDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 473 ~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
++.++||+| |.+|+||....+
T Consensus 629 de~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccceeEEecCCceEEEEeccCc
Confidence 999999999 999999999887
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.5e-23 Score=190.11 Aligned_cols=297 Identities=15% Similarity=0.205 Sum_probs=206.3
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
.|...+.||++.|.||+..|.| .+|++|+.||+|+||.+.++.++..+. ..+.|.||+|+|.....+++++....+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceE
Confidence 4556789999999999999999 799999999999999999999999875 6679999999998555555555555666
Q ss_pred EEECCCCceeee------e-ecC--CC------CC-------------CCCCcccceEEEEecCCCCEEEEEeC---CCc
Q 009022 241 CTDLETGLALSL------M-NVN--PN------GW-------------HGPRTWRMLYGMDINPEKGVVLVADN---FGF 289 (546)
Q Consensus 241 iwd~~~~~~~~~------~-~~~--~~------~~-------------~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 289 (546)
|.+..-|..+.. + ... .. .| ....+...|..+.|+..|.||++... ...
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 666544421111 0 000 00 00 01123346889999999999999755 357
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
|.|..+....... .+....+.|.++.|+| ...+|++++ ...|+|||+......+.+ +.....|.+++++|.|.
T Consensus 548 VliHQLSK~~sQ~---PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL--~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 548 VLIHQLSKRKSQS---PFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKL--LTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEEecccccccC---chhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHH--hcCCeeeeeeeecCCCC
Confidence 8888887654332 3334455799999999 656666655 568999999753332222 25677899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
.|+.|+.|+.+..||+.-+.- +... ...|.. ...++|++. =.+++ +|+.|+++.||.-.
T Consensus 621 nli~gs~d~k~~WfDldlssk--Pyk~------lr~H~~avr~Va~H~r---------yPLfa---s~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSK--PYKT------LRLHEKAVRSVAFHKR---------YPLFA---SGSDDGTVIVFHGM 680 (733)
T ss_pred eEEEecCCCeeEEEEcccCcc--hhHH------hhhhhhhhhhhhhccc---------cceee---eecCCCcEEEEeee
Confidence 999999999999999975421 1010 001111 123556554 23344 78899999998642
Q ss_pred c------h---hhhHhhcCCCCC---cccceeeecCCCcEEEEec-CCcEEEE
Q 009022 449 T------G---QLVAEVMDPNIT---TISPVNKLHPRDDVLASGS-SRSIFIW 488 (546)
Q Consensus 449 ~------~---~~~~~~~~~~~~---~i~~v~~~s~~~~~l~sgs-dg~i~vw 488 (546)
- . -++..+.+|... ++..+ .|||...+|++++ ||+|++|
T Consensus 681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~-~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT-IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEeeeeccCceeecccceEee-cccCCCceEEecCCCceEEee
Confidence 1 1 134566677533 24444 6999999999988 9999999
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=7.2e-23 Score=195.17 Aligned_cols=300 Identities=19% Similarity=0.277 Sum_probs=233.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..|+.-.+.|++++|..||+.+||+|+..|.+.+||++..+....+...|.+.|..+.|.|. ...+++++.|+.+++|=
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEE
Confidence 44553459999999999998899999999999999999998888887899999999999998 88999999999998885
Q ss_pred CCCCce----eeeeecCCC--------------------------------------------------CCC--------
Q 009022 244 LETGLA----LSLMNVNPN--------------------------------------------------GWH-------- 261 (546)
Q Consensus 244 ~~~~~~----~~~~~~~~~--------------------------------------------------~~~-------- 261 (546)
.+++.. ++...+|.. ...
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 553211 000000000 000
Q ss_pred -------------------------------------------CCC----cccceEEEEecCCCCEEEEEeCCCcEEEEe
Q 009022 262 -------------------------------------------GPR----TWRMLYGMDINPEKGVVLVADNFGFLYLVD 294 (546)
Q Consensus 262 -------------------------------------------~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 294 (546)
.+. ....+.+++.++-|++.+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000 113577888899999999999999999999
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT 374 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 374 (546)
+.++-..........|..+|++++... .++.+++++.+|.+++||..+.. .+..+.-...+.++..+....+++.+
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~---l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV---LKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred cccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcc---eeeeeccCCCcceeeeeehhhhhhhh
Confidence 998766555444456778999999987 78899999999999999997544 33334456678899999988899999
Q ss_pred eCCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhh
Q 009022 375 SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 375 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
..|-.|+++|+.+.+..+. +.++. ....+.|+|+ |++++ +++.|++|++||+.++.++
T Consensus 553 ~ddf~I~vvD~~t~kvvR~---------f~gh~nritd~~FS~D---------grWli---sasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVRE---------FWGHGNRITDMTFSPD---------GRWLI---SASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred cCceeEEEEEchhhhhhHH---------hhccccceeeeEeCCC---------CcEEE---EeecCCcEEEEeccCccee
Confidence 9999999999988776432 22222 2246889998 99999 8999999999999999998
Q ss_pred HhhcCCCCCcccceeeecCCCcEEEEec-C-CcEEEEcCCC
Q 009022 454 AEVMDPNITTISPVNKLHPRDDVLASGS-S-RSIFIWRPKE 492 (546)
Q Consensus 454 ~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d-g~i~vwd~~~ 492 (546)
..+.-. .....+ .|+|+|.+|||.. | ..|++|--.+
T Consensus 612 D~~~vd--~~~~sl-s~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 612 DGLLVD--SPCTSL-SFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeEecC--Ccceee-EECCCCCEEEEEEecCceEEEEEchh
Confidence 877544 334455 8999999999999 7 8999997543
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.8e-24 Score=172.60 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=179.6
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC--CCCcEEEEEcCCCcEEEE
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP--TNNHILLSGDKKGQVGVW 198 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~~~d~~i~iw 198 (546)
...+++++.+.++++.......+ ...+.+|.||.++|..++|.. .| .+||+++.||.|.||
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~----------------s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQ----------------SKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIW 85 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCC----------------ceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEE
Confidence 46677777777777665433322 123467999999999999966 67 799999999999999
Q ss_pred eCCCCceeEE-ecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCC-c--eeeeeecCCCCCCCCCcccceEEEE
Q 009022 199 DFYKVSEKIV-YGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETG-L--ALSLMNVNPNGWHGPRTWRMLYGMD 273 (546)
Q Consensus 199 d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~v~~~~ 273 (546)
.-.+++-... ....|...|++++|.|.. +-.|++++.||.|.|.+.+.. . .......|.. .|++++
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~---------GvnsVs 156 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI---------GVNSVS 156 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc---------ccceee
Confidence 9887743222 226799999999999975 567888999999999988765 1 1122222222 489999
Q ss_pred ecCC---C-----------CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC---CEEEEEeCCCeE
Q 009022 274 INPE---K-----------GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP---ELLLSCGNDHFA 336 (546)
Q Consensus 274 ~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~---~~l~~~~~dg~i 336 (546)
|.|. | +.|++|+.|..|+||+.......... .+..|...|+.++|.|..+ ..|++++.||++
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh-hhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 9885 4 57999999999999999886433222 3667788999999999443 489999999999
Q ss_pred EEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 337 RIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
.||-.+.....-....+ .....+.++.|++.|++|++++.|+.|.+|.-.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99988732221111112 456789999999999999999999999999643
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=184.35 Aligned_cols=255 Identities=16% Similarity=0.221 Sum_probs=183.3
Q ss_pred CCccccCCCCCCCCchhhhhcccCCCCCC--CCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 009022 122 YGVTPASHRNAGNPVEYVFERQLRPNMTY--MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 199 (546)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd 199 (546)
..++.+..+..+.+|++.......+.... ......-..+..-....+|++.|.+|+|+..-.++||+|+.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 34555666677778875433322111110 0000000001112335689999999999998878999999999999999
Q ss_pred CCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc-eeeeeecCCCCCCCCCcccceEEEEecCCC
Q 009022 200 FYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINPEK 278 (546)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 278 (546)
+.++++...+ ..|...|.++.|+|..+.+|++|+.|++|.+.|.+... .-..++.. ..|-.++|.|..
T Consensus 273 ~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~----------g~VEkv~w~~~s 341 (463)
T KOG0270|consen 273 VDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD----------GEVEKVAWDPHS 341 (463)
T ss_pred cCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec----------cceEEEEecCCC
Confidence 9999998888 58999999999999989999999999999999998422 12222222 148889999864
Q ss_pred -CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCC
Q 009022 279 -GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR 357 (546)
Q Consensus 279 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 357 (546)
..+++++.||.|+-+|+|..... +.....|.++|.+|++++....++++++.++.|++|++...........--.-+
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~ 419 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLG 419 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCc--eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccccc
Confidence 56778889999999999987532 345667777999999999889999999999999999986543321111000112
Q ss_pred cEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCC
Q 009022 358 VVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 358 ~v~~~~~~p~-~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
...|+++.|+ ...++.|+..+.++|||+.+..
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 3667777784 4567788888899999997654
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=1.7e-23 Score=193.32 Aligned_cols=127 Identities=19% Similarity=0.311 Sum_probs=103.2
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE-----EecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-----VYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
.+..|.+|.+.|+.+.|+|-.+.+||||+.|..|+||.+..+.... ....+..-.|.++.|+|. ..-|+..+..
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT-aDgil~s~a~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT-ADGILASGAH 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccC-cCceEEeccC
Confidence 3467889999999999999877899999999999999998432211 121334457899999999 4444444556
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 298 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 298 (546)
|+++|||+.+++.+..+..+.. .|.++.|+.||.+|++++.|..|+|||.+..
T Consensus 150 g~v~i~D~stqk~~~el~~h~d---------~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTD---------KVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred ceEEEEEcccCceeecccCCch---------hhhccccccCCceEeeecCCcceEEeCCccC
Confidence 9999999999999888776655 4899999999999999999999999999864
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3e-22 Score=169.48 Aligned_cols=273 Identities=14% Similarity=0.163 Sum_probs=184.0
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE---EecccCCCceEEEEEec-CCCCEEEEEeCCCeEEE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSC 241 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~i 241 (546)
-.+|.+-|+|+.|.+.| +.+|+|+.|++|+|||........ .-.+.|.+.|..|.|.+ .=|+.+++++.|+++.|
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45799999999999999 679999999999999975543222 22267999999999964 34889999999999999
Q ss_pred EECCCC-------ceeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcc------eE-
Q 009022 242 TDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGE------AI- 305 (546)
Q Consensus 242 wd~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~------~~- 305 (546)
|.=... +-+....+ ......|+.+.|.|. |-.+++++.||.|+||+......... +.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl-------~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTL-------VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred eeecccccccccceeEEEEEe-------ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 975311 11111111 111235999999984 77899999999999998765322111 10
Q ss_pred ---EeecCCCcEEEEEECCC--CCCEEEEEeCC-----CeEEEEECCCCC-CCceeeec-CCCCcEEEEEEeCC----CC
Q 009022 306 ---LIHRKGSKVVGLHCNPI--QPELLLSCGND-----HFARIWDIRRLE-AGSSLCDL-PHKRVVNSAYFSPS----GS 369 (546)
Q Consensus 306 ---~~~~~~~~i~~~~~~p~--~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~-~~~~~v~~~~~~p~----~~ 369 (546)
....+..+..|+.|+|. ...+||+|+.+ +.++||...... .-..+..+ +|..+|+.|+|.|+ ..
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 11223447889999983 24578888765 478888775432 22223233 79999999999994 35
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+||+++.|| |+||.+...... +..... -.|. .- ..+.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~------i~~ee~----------~~~~------------------~~--~~l~------ 277 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSA------IEEEEV----------LAPD------------------LM--TDLP------ 277 (361)
T ss_pred eEEEeecCc-EEEEEEeeccch------hhhhcc----------cCCC------------------Cc--cccc------
Confidence 799999999 999998643210 000000 0000 00 0011
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
-+.+..+.+|. +.+..+ .|.-.|..|++.+ ||.||+|...
T Consensus 278 v~~vs~~~~H~-~~VWrv-~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 278 VEKVSELDDHN-GEVWRV-RWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEeeeccCCC-CceEEE-EEeeeeeEEeecCCCceeeehhhh
Confidence 12233454554 778888 8999999999988 9999999854
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=175.50 Aligned_cols=213 Identities=21% Similarity=0.338 Sum_probs=168.9
Q ss_pred ccccCCCeEEEEEcCCC-CcEEEEEcCCCcEEEEeCCC----------------CceeEEecccCCCceEEEEEecCCCC
Q 009022 166 IRYHSRRVTCLEFHPTN-NHILLSGDKKGQVGVWDFYK----------------VSEKIVYGNIHSCIVNNIRFNPTNDG 228 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~-~~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (546)
..+|.+.|+.+..++-+ ..++++-+..|.|.||++.. .+.+..+ .+|...=..|+|+|-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccc
Confidence 34588888888887764 24667778899999999842 1233444 678888899999997566
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEe
Q 009022 229 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILI 307 (546)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 307 (546)
.|++|..-+.|++|...++.-. ....++.+ +...|-.|+|+|. ...|++|+.||+|+|||+|.+.....+ ..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~g--H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~ 298 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK----VDQRPFTG--HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-ST 298 (440)
T ss_pred ccccCccccceEeeeeccCcee----ecCccccc--cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-Ee
Confidence 7888888889999998876432 22233333 2235899999995 568899999999999999997554433 44
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~ 385 (546)
..|.+.|+.|.|+. ...+||+|+.||+++|||+|+.+..+++..+ .|..+|++|.|+| +...|++++.|..|.+||+
T Consensus 299 kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 77778999999998 6669999999999999999998888777666 6999999999999 6778889999999999999
Q ss_pred CC
Q 009022 386 IF 387 (546)
Q Consensus 386 ~~ 387 (546)
..
T Consensus 378 sv 379 (440)
T KOG0302|consen 378 SV 379 (440)
T ss_pred ec
Confidence 64
No 133
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=173.83 Aligned_cols=287 Identities=17% Similarity=0.181 Sum_probs=203.2
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
..+|++...|.|++||..+++.+..+ .++...++.++|... .+..+.+|+.||+|++||+++......+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 46888888999999999998888887 789999999999874 4889999999999999999988777666544322
Q ss_pred CCcccceEEEEecCCCCEEEEEe----CCCcEEEEeCCCCCC-CcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVDARTNSR-SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
..+..+++....++.+++|+ .+..|.+||+|..+. +..+ ...|...|+++.|+|.++++|++|+.||.|.
T Consensus 117 ---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 117 ---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--NESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh--hhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 12477788777888898885 467999999999876 3332 3345568999999999999999999999999
Q ss_pred EEECCCCCCC-ceeeecCCCCcEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC---CceeE
Q 009022 338 IWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL---TPFRA 412 (546)
Q Consensus 338 iwd~~~~~~~-~~~~~~~~~~~v~~~~~~p~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 412 (546)
|||+...... ..+..+.+...|.++.|+..+ +.|.+-+...+..+|++..+................... .-+--
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 9999764332 233444788889999999865 457788889999999999876432221111111100000 00111
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC---C---chhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcE
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI---T---TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 485 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~---~---~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i 485 (546)
..+|.+. .+.+. .|...+...++-+ . .++.+..+.+++...+..+ .|...+.+|.||+ ||.+
T Consensus 272 ~~~~~~~--------~~~~l--~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i-~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 272 EHSPGDK--------DTCAL--AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI-LFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred cccCCCc--------ceEEE--eccccCceeEEEeeecccccccCccccccCCcHHHHHHH-hhhcccceeeccCCCceE
Confidence 2223321 11111 1222333444332 2 3455667778777777777 7888899999999 9999
Q ss_pred EEEcC
Q 009022 486 FIWRP 490 (546)
Q Consensus 486 ~vwd~ 490 (546)
.+|..
T Consensus 341 ~~Wk~ 345 (376)
T KOG1188|consen 341 QAWKV 345 (376)
T ss_pred EEEec
Confidence 99997
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=180.06 Aligned_cols=241 Identities=20% Similarity=0.244 Sum_probs=181.1
Q ss_pred cEEEEEcCCCcEEEEeCCCCc--ee-E-----------------EecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 184 HILLSGDKKGQVGVWDFYKVS--EK-I-----------------VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~--~~-~-----------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+|+|.|+.|..|.|||+.-.. .+ . ....+|+..|.+++|+..-.+.|++|+.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 699999999999999985211 00 0 011369999999999988788999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
+.++++...+..+.. .|.++.|.|. ..+|++|+.|++|.+.|+|..........+. +.|-.++|.|.
T Consensus 273 ~~~g~p~~s~~~~~k---------~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~ 340 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGK---------KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPH 340 (463)
T ss_pred cCCCCcceehhhcCC---------ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCC
Confidence 999999998876554 5999999984 7789999999999999999754444333333 37999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
....++++..||+|+-+|+|+.. .++..+ .|...|.+|++++ ...++++++.|+.|++|++..-... ....
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-----~v~~ 413 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-----SVKE 413 (463)
T ss_pred CceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-----cccc
Confidence 88899999999999999999764 344444 8999999999998 6678999999999999998643321 1111
Q ss_pred cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh
Q 009022 401 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 455 (546)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~ 455 (546)
+.+.-.. ..+.++.|+. .-+++ .|+..+.++|||+.+...+..
T Consensus 414 ~~~~~~r-l~c~~~~~~~--------a~~la---~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 414 HSFKLGR-LHCFALDPDV--------AFTLA---FGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccc-eeecccCCCc--------ceEEE---ecCccceEEEeecccChhHHH
Confidence 1111110 1244445542 11223 577777999999998876654
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2e-23 Score=187.70 Aligned_cols=259 Identities=17% Similarity=0.296 Sum_probs=202.6
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc---eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 288 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 288 (546)
.|..-|.++..+.. .+++++|+. |.|+|||+.... .+..+.+- .....|.++.+.|+|+.|++|+.-.
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-------~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-------NRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCcccccccc-------CcccceeeeEecCCCceEEeccccc
Confidence 58888999999887 889999987 789999997542 12222111 1112588999999999999999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 367 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~ 367 (546)
++.|||+.......+. .+....-.+++++.+| +.++.+++..||.|.|||+++... +..+ +|...+.||.++++
T Consensus 488 tlsiWDLAapTprika-eltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~---VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKA-ELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISKD 562 (705)
T ss_pred eeeeeeccCCCcchhh-hcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee---eecccCCCCCceeEEecCC
Confidence 9999999886654332 2222233678899999 999999999999999999986433 3334 89999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 368 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
|..|.||+.|++||.||+++++... .++|. ..++++.++|. +.+++ .|..++.+.|..+
T Consensus 563 GtklWTGGlDntvRcWDlregrqlq-------qhdF~--SQIfSLg~cP~---------~dWla---vGMens~vevlh~ 621 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQ-------QHDFS--SQIFSLGYCPT---------GDWLA---VGMENSNVEVLHT 621 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhh-------hhhhh--hhheecccCCC---------cccee---eecccCcEEEEec
Confidence 9999999999999999999887533 22332 33467888888 78888 7888899988887
Q ss_pred CchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 448 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
.. .....+.-|. ..|.++ .|.+.|+++++.+ |..+-.|...-|..+...++...++.|
T Consensus 622 sk-p~kyqlhlhe-ScVLSl-KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsC 680 (705)
T KOG0639|consen 622 SK-PEKYQLHLHE-SCVLSL-KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 680 (705)
T ss_pred CC-ccceeecccc-cEEEEE-EecccCceeeecCchhhhhhccCccccceeeccccCcceee
Confidence 43 3334443443 777787 9999999999988 999999999999999999988887666
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=182.19 Aligned_cols=291 Identities=17% Similarity=0.259 Sum_probs=211.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc-cCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-IHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
+.+.--..+|+||+|+.+. +.||.+-.+|.|-||++...-....... +....|.+++|++ +..|++.+.+|.|.-|
T Consensus 19 rf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence 3444567799999999988 5799999999999999988655444333 3456799999996 6789999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|+.+++.+..+..... .|++++.+|.+..+++|+.||.++.++...+...... .+....+.+.+++|+|
T Consensus 96 Dl~~lk~~~~~d~~gg---------~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~- 164 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGG---------AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP- 164 (691)
T ss_pred ecccCceeEEecCCCc---------ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-
Confidence 9999998877755443 5999999999999999999998888888776544332 2333446899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeee--c----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcc
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCD--L----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
++..|++|+.||.|++||..++.....+.. . +...-|.++.|- ....|++|...|+|.+||...+.++.....
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 999999999999999999976554331111 1 133456777777 445789999999999999998887543221
Q ss_pred eeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh---hHhhcCCCCCcccceeeecCC
Q 009022 397 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL---VAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~v~~~s~~ 473 (546)
.....++++-.++ +.++. +++.|+.|..|...++.. ......+|...+.++ +..++
T Consensus 244 --------h~adVl~Lav~~~---------~d~vf---saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~-av~~~ 302 (691)
T KOG2048|consen 244 --------HDADVLALAVADN---------EDRVF---SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM-AVIEN 302 (691)
T ss_pred --------hhcceeEEEEcCC---------CCeEE---EccCCCceEEEEecCCccceeeeccccCCcccceee-eeecc
Confidence 1111234555554 44555 678888888888776643 222233444556655 44444
Q ss_pred CcEEEEec-CCcEEEEcCCC
Q 009022 474 DDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 474 ~~~l~sgs-dg~i~vwd~~~ 492 (546)
.|++|+ |..+.+=....
T Consensus 303 --~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --eEEecceeeEEEEccccc
Confidence 788888 88887766544
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2.7e-22 Score=185.69 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=198.0
Q ss_pred EEEcC--CCCcEEEEEcCCCcEEEEeCCCCcee-----EEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 176 LEFHP--TNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 176 l~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
..|++ ....+|+.+..+|.|.++|....... ......|...|..+.|.|. ...|++++.|.++++||+.+..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccce
Confidence 45544 44478999999999999998753322 2333679999999999995 8999999999999999999988
Q ss_pred eeee--eecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCC-------------------cce--
Q 009022 249 ALSL--MNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRS-------------------GEA-- 304 (546)
Q Consensus 249 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~-------------------~~~-- 304 (546)
.... +..|.. .+.+++|.+. ...|++|+.||.|.|||++-...- .+.
T Consensus 134 l~G~~~~~GH~~---------SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 134 LVGGRLNLGHTG---------SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eecceeeccccc---------ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 7765 333332 4889999995 568888999999999998753200 000
Q ss_pred ---EEeecCCCcEEE---EEECCCCCCEEEEEeC-CCeEEEEECCCCCCCceeeec------CC---CCcEEEEEEeCCC
Q 009022 305 ---ILIHRKGSKVVG---LHCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDL------PH---KRVVNSAYFSPSG 368 (546)
Q Consensus 305 ---~~~~~~~~~i~~---~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~------~~---~~~v~~~~~~p~~ 368 (546)
.....+...|.+ +.+.. +...||+++. |+.|+|||+++.......... .| .-.+.++.....|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 011112223333 33444 7888888887 999999999875432211111 12 3457788888888
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc-ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN-RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
.+|++.+.|+.|++|++.+-.... ...+... .....+....+|+ +.+++ +|+.|...++|.+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP-----~~~~sg~~~~sf~vks~lSpd---------~~~l~---SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISP-----VAEFSGKLNSSFYVKSELSPD---------DCSLL---SGSSDEQAYIWVV 346 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCc-----hhhccCcccceeeeeeecCCC---------CceEe---ccCCCcceeeeee
Confidence 999888899999999997643211 1111100 0111123445565 78888 9999999999999
Q ss_pred CchhhhH-hhcCCCCCcccceeeecCCC-cEEEEec-CCcEEEEcCCCC
Q 009022 448 TTGQLVA-EVMDPNITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 448 ~~~~~~~-~~~~~~~~~i~~v~~~s~~~-~~l~sgs-dg~i~vwd~~~~ 493 (546)
.+-+.-- .+.+|. ..+.++ +|.|.. .-+++++ |-+++||++..+
T Consensus 347 s~~e~~~~~l~Ght-~eVt~V-~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 347 SSPEAPPALLLGHT-REVTTV-RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCccCChhhhhCcc-eEEEEE-eeccccCCCceeeccCcceEEEeccCc
Confidence 8876444 444554 778888 787743 3355668 999999998665
No 138
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-22 Score=189.87 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=210.0
Q ss_pred eeccCCCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEE-EEEcCC
Q 009022 103 LCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTC-LEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~ 181 (546)
.+.+.+|..-++.........+++++++.+.++|......-+ ..+.+.+|.+-|.+ ++|.+.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l-----------------~~~~~~~~~g~i~~~i~y~e~ 69 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYL-----------------ETHAFEGPKGFIANSICYAES 69 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccc-----------------cceecccCcceeeccceeccc
Confidence 466788987777766677778999999999999974322211 12457788888888 888763
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
..-.|++|+.|..|.+|.+.+......+ .+|...|.++....+ +. +++|+.|.++++|-+. ++...+..|+.
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~-~~-~iSgSWD~TakvW~~~--~l~~~l~gH~a--- 141 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGED-GT-LISGSWDSTAKVWRIG--ELVYSLQGHTA--- 141 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCc-Cc-eEecccccceEEecch--hhhcccCCcch---
Confidence 3235999999999999999988888777 799999999997765 54 9999999999999864 34444444433
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.|+++..-|.+ .+++|+.|..|++|.-.+ .. ..+.+|...|+.+++.| ...|++++.||.|++|++
T Consensus 142 ------sVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l---~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 142 ------SVWAVASLPEN-TYVTGSADKTIKLWKGGT--LL---KTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred ------heeeeeecCCC-cEEeccCcceeeeccCCc--hh---hhhccchhheeeeEEec--CCCeEeecCCceEEEEec
Confidence 58999988888 899999999999997643 22 24456777999999996 456889999999999999
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
. +.. .+...+|...|+++...+++..+++++.|++++||+.. .+.+. +.. |....|+..
T Consensus 208 ~-ge~--l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~----I~l--------PttsiWsa~---- 266 (745)
T KOG0301|consen 208 D-GEV--LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQV----ITL--------PTTSIWSAK---- 266 (745)
T ss_pred c-Cce--eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEE----Eec--------CccceEEEE----
Confidence 3 222 44445999999999988889999999999999999975 22111 110 112233321
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+...|..+ +|++||.|+||...
T Consensus 267 -~L~NgDIv----vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 267 -VLLNGDIV----VGGSDGRVRVFTVD 288 (745)
T ss_pred -EeeCCCEE----EeccCceEEEEEec
Confidence 12225555 59999999999876
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.7e-22 Score=187.42 Aligned_cols=331 Identities=16% Similarity=0.208 Sum_probs=231.4
Q ss_pred eeeeeccccCCCeEEEEEcCCC--CcEEEEEcCCCcEEEEeCCCCc------------------------eeE------E
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYKVS------------------------EKI------V 208 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~--~~~l~s~~~d~~i~iwd~~~~~------------------------~~~------~ 208 (546)
..+..+.||.+.|.+|+|...+ ..+|||++.|..||||.+.-.. ... .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 4567899999999999998754 3589999999999999873211 000 1
Q ss_pred ecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee--eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC
Q 009022 209 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 286 (546)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 286 (546)
+..+|...|.++.|+|. +..|++++.|.++.+|...+..-+. ......-. ......++..|+|+++.+++-+.
T Consensus 262 ll~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g----g~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG----GSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeeccc----ccccceeeEEEcCCCCEEEEecc
Confidence 22589999999999999 8899999999999999877653333 22222111 11124788899999999999999
Q ss_pred CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC-Cceee-ecCCCCcEEEEEE
Q 009022 287 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-GSSLC-DLPHKRVVNSAYF 364 (546)
Q Consensus 287 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~~v~~~~~ 364 (546)
.|..++|...............+|-..|.+++|.| .+.+|++.+.|.+-|+|-.-..+. ...+. ..-|...++|++|
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999998444333333345567777999999999 999999999999999987541111 11111 1137788999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC----------CCCC-----CCC----------cceeec-------------------
Q 009022 365 SPSGSKILTTSQDNRLRIWDSIF----------GNLD-----SPS----------REIVHS------------------- 400 (546)
Q Consensus 365 ~p~~~~l~s~s~dg~i~vwd~~~----------~~~~-----~~~----------~~~~~~------------------- 400 (546)
-+....|++|.....+|+|+... +.+. .+. ......
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 98677789999999999998742 1000 000 000000
Q ss_pred -----------------------cC-CcccCCceeEEecCCCCCCceeEEeeeeeecC--CCCcCcceEEEECCchhhhH
Q 009022 401 -----------------------HD-FNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAALHPIDFIDITTGQLVA 454 (546)
Q Consensus 401 -----------------------~~-~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~g~~d~~i~iwd~~~~~~~~ 454 (546)
+. +++....++++.+|+ |++++... +--....|++|++.+...++
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~---------gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT---------GNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC---------CCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 00 011111233444444 66766321 12234569999999999999
Q ss_pred hhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc----cceeeccceEEEe
Q 009022 455 EVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE----LVEQKEEMKIIVC 508 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~----~~~~~~~~~~i~~ 508 (546)
.+.+|. -.|+.+ +|||||+||++.+ |.++.+|....... ....+.|+++|-.
T Consensus 567 ~L~~Hs-LTVT~l-~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 567 ELEGHS-LTVTRL-AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred eecccc-eEEEEE-EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 998887 778888 9999999999999 99999999865432 2336788888654
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.2e-22 Score=168.32 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=182.7
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
......|..|.|+|. +..|++++.||++++|++........+... .++.+++|.+ ...+++|+.||.|
T Consensus 10 npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~~~----------~plL~c~F~d-~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFKHG----------APLLDCAFAD-ESTIVTGGLDGQV 77 (323)
T ss_pred CCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhheecC----------CceeeeeccC-CceEEEeccCceE
Confidence 445678999999988 888888889999999999887555544332 2589999987 5678999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
+.+|+.++... ....|..+|.||.+++ ....+++|+.|++|++||.+... ....+.....|.++.. .++.
T Consensus 78 r~~Dln~~~~~----~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v--~g~~ 147 (323)
T KOG1036|consen 78 RRYDLNTGNED----QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKV---VVGTFDQGKKVYCMDV--SGNR 147 (323)
T ss_pred EEEEecCCcce----eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccc---cccccccCceEEEEec--cCCE
Confidence 99999986543 4556777999999998 77889999999999999998522 2223344557888877 6889
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
|++|+.+..|.+||+++.....+.+ ...+.-. .-+++..|.. +-|+ .++-+|.|.+=.+...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyq--tR~v~~~pn~--------eGy~----~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQ--TRCVALVPNG--------EGYV----VSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhc----cccceeE--EEEEEEecCC--------CceE----EEeecceEEEEccCCc
Confidence 9999999999999998765422111 1111111 1245566642 1222 3667777776544443
Q ss_pred ----hhhHhhcCCC--------CCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeecc
Q 009022 451 ----QLVAEVMDPN--------ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 451 ----~~~~~~~~~~--------~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
+....|..|. .-.|.++ +|||-...||||+ ||.|.+||+.+.+.+..+..-
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai-~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAI-AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEecee-EeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 2333344442 1245555 8999999999999 999999999999988888665
No 141
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=166.69 Aligned_cols=280 Identities=16% Similarity=0.225 Sum_probs=198.9
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCc------------eeEEecccCCCceEEEEEe-------cCCCCEEEEEeC
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVS------------EKIVYGNIHSCIVNNIRFN-------PTNDGTVYAASS 235 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~-------~~~~~~l~s~~~ 235 (546)
.+.|+|+| ..|++-+.|..+++|++...- ....+.......|..-+|- |+ .+++++.+.
T Consensus 54 gckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSSR 131 (406)
T ss_pred cceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeeccc
Confidence 57899999 678888999999999985311 1111212345567888886 55 789999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC-CCCCCCcceEE-e---ecC
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA-RTNSRSGEAIL-I---HRK 310 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~-~---~~~ 310 (546)
+.-|++||.-+|+....+..-. .........+++|+|||.+|++|.. ..|++||+ +.+........ . ...
T Consensus 132 ~~PIh~wdaftG~lraSy~~yd----h~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYD----HQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cCceeeeeccccccccchhhhh----hHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999998876654321 1112224679999999999998765 79999999 44433211111 1 122
Q ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCC
Q 009022 311 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGN 389 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~ 389 (546)
.+-|.+++|+|.+...+++|+....+-||.-....+ .....+|.+.|+.++|+++|+.|.+|+. +-.|..||++..+
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 457899999998888999999988888887754444 2222389999999999999999999986 6789999998543
Q ss_pred CCCCCcceeeccCCcccCC--ceeEEe--cCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc-hhhhHhhcCCCCCcc
Q 009022 390 LDSPSREIVHSHDFNRHLT--PFRAEW--DPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-GQLVAEVMDPNITTI 464 (546)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~--~~~~~~--~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~-~~~~~~~~~~~~~~i 464 (546)
.. +. .+.++.. .-++.| .|. |++++ +|..+|.|++||+++ |..+..+. .+...+
T Consensus 285 ~p------v~--~L~rhv~~TNQRI~FDld~~---------~~~La---sG~tdG~V~vwdlk~~gn~~sv~~-~~sd~v 343 (406)
T KOG2919|consen 285 DP------VY--ALERHVGDTNQRILFDLDPK---------GEILA---SGDTDGSVRVWDLKDLGNEVSVTG-NYSDTV 343 (406)
T ss_pred ch------hh--hhhhhccCccceEEEecCCC---------Cceee---ccCCCccEEEEecCCCCCcccccc-cccccc
Confidence 21 11 1111111 113333 343 88888 899999999999998 66555554 444778
Q ss_pred cceeeecCCCcEEEEecCCcE
Q 009022 465 SPVNKLHPRDDVLASGSSRSI 485 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgsdg~i 485 (546)
..+ +++|--.++|+++...+
T Consensus 344 Ngv-slnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 344 NGV-SLNPIMPILATSSGQRI 363 (406)
T ss_pred cce-ecCcccceeeeccCcee
Confidence 888 89999999999884443
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=5.4e-21 Score=172.34 Aligned_cols=304 Identities=17% Similarity=0.259 Sum_probs=223.6
Q ss_pred CCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE---ecccCCCceEEEEEecCCCCE
Q 009022 153 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV---YGNIHSCIVNNIRFNPTNDGT 229 (546)
Q Consensus 153 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 229 (546)
..|..+........+.-...|....|+|.+++++++++. +.+..|++..+..... +.......|.|++|.++ .-
T Consensus 183 SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en--gd 259 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN--GD 259 (626)
T ss_pred chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCC--CC
Confidence 344455555555566677889999999999888999886 6899999988765443 22334467999999996 46
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--------
Q 009022 230 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS-------- 301 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------- 301 (546)
+++|..+|.|.||+..+.+..+....|.. .|.+++...+|.+|- |+.|..|..||-.-.+..
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~g---------gv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQVHAHDG---------GVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeEeeecCC---------ceEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 78999999999999988777666555544 499999999888666 999999999983221100
Q ss_pred ---c--------------------------ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee
Q 009022 302 ---G--------------------------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD 352 (546)
Q Consensus 302 ---~--------------------------~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 352 (546)
. ..+....|+.....++.+| ..+.+++++.|+.+++|+- .+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~-----~k~~wt 403 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWND-----HKLEWT 403 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccC-----CceeEE
Confidence 0 0011234455677888999 8889999999999999992 223333
Q ss_pred cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeee
Q 009022 353 LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 432 (546)
Q Consensus 353 ~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 432 (546)
.....++.|+.|+|.| .+|.|+..|...|.|..+..++. .+.- ......+.|+|+ |.++|
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-------~~~d--~~~ls~v~ysp~---------G~~lA- 463 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-------IHTD--NEQLSVVRYSPD---------GAFLA- 463 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-------EEec--CCceEEEEEcCC---------CCEEE-
Confidence 3456778999999999 99999999999999998755422 1111 112236789998 89999
Q ss_pred cCCCCcCcceEEEECCch-hhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccce
Q 009022 433 NYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 498 (546)
Q Consensus 433 ~~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~ 498 (546)
.|+.|+.|+||-+..+ .....+..++...++.+ .||+|+++|.+-+ |-.|..|.....+.+..
T Consensus 464 --vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL-DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 464 --VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL-DWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred --EecCCCeEEEEEECCCCcEEEEeeeecCceeEEe-eecCCCceEEeccCceEEEEEccccCcccce
Confidence 8999999999998754 34444444444666666 9999999999988 99999996555554444
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=6.2e-21 Score=171.96 Aligned_cols=296 Identities=15% Similarity=0.179 Sum_probs=208.7
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-----------ee---------------------------
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----------EK--------------------------- 206 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~--------------------------- 206 (546)
....|.+.|.+|+...+| . |++|+.|+.|..||-.-.+ .+
T Consensus 282 ~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 344899999999999999 4 7779999999999841100 00
Q ss_pred -EEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe
Q 009022 207 -IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 285 (546)
Q Consensus 207 -~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 285 (546)
.....+|......++.+|+ ..+|++++.|+.+++|+ ..+.+....... ++.|+.|+|.| .+++|+
T Consensus 360 f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d----------~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKIIED----------PAECADFHPSG-VVAVGT 425 (626)
T ss_pred ceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEEecC----------ceeEeeccCcc-eEEEee
Confidence 0011458888999999999 99999999999999999 444444433321 48899999999 999999
Q ss_pred CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEe
Q 009022 286 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 365 (546)
Q Consensus 286 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 365 (546)
..|...+.|..+.. ++..+....+++++.|+| ++.+||.|+.|+.|+||-+.............+..+|+.+.|+
T Consensus 426 ~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 426 ATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred ccceEEEEecccce----eEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 99999999998843 334455577999999999 9999999999999999998754432222222355899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC--ceeEEecCCCCC---CceeEEeeeeeecCCCCcCc
Q 009022 366 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAEWDPKDPS---ESLAVIGRYISENYNGAALH 440 (546)
Q Consensus 366 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~---~~~~~~g~~~~~~~~g~~d~ 440 (546)
+++++|.+-+.|-.|..|....-+...+.+.+. ...... .+.+.-..+... ...+...++++ +|...|
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk----W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA---~gdd~g 573 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVK----WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLA---SGDDFG 573 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceeccee----eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhh---ccccCc
Confidence 999999999999999999544333322211111 000000 000111111111 11111355666 888999
Q ss_pred ceEEEECCchhhhH---hhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 441 PIDFIDITTGQLVA---EVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 441 ~i~iwd~~~~~~~~---~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
.|++|...--+..+ .+.+ +...+.++ +|.-+...|++.+ |.+|..|++
T Consensus 574 ~v~lf~yPc~s~rA~~he~~g-hs~~vt~V-~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 574 KVHLFSYPCSSPRAPSHEYGG-HSSHVTNV-AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEEEccccCCCcccceeecc-ccceeEEE-EEeeCCceEEecCCCceEEEEEe
Confidence 99999875433322 3334 44788888 9998888888877 999999986
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=172.56 Aligned_cols=260 Identities=12% Similarity=0.166 Sum_probs=192.8
Q ss_pred EEEEE-cCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 185 ILLSG-DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 185 ~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
+++++ ..-..|.+|.+......... ..-.++|.+++-+|. |.+|+.|+..|.|++|.+.+|..+..+..|.+
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ----- 124 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ----- 124 (476)
T ss_pred heeeecccCccccccccCchhhhhhh-cccccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHHhhcc-----
Confidence 44444 44568999999876554422 346788999999999 98999998999999999999999988866554
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC------CCCcceEEeecCCCcEEEEEECCC-CCCEEEEEeCCCeE
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN------SRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFA 336 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i 336 (546)
.|+++.|+.|+.+|++|+.||.|.+|.+-.- ........++.|.-+|+++...+. ....|++++.|.++
T Consensus 125 ----~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 125 ----SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ----ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 5999999999999999999999999986431 123334467788889999998872 34689999999999
Q ss_pred EEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC-----Cc--ceeeccCCccc---
Q 009022 337 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP-----SR--EIVHSHDFNRH--- 406 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~--~~~~~~~~~~~--- 406 (546)
++||+..+ ..+........+++++.+|-...+++|+.+|.|.+.++....-... .. .......+.++
T Consensus 201 k~wdlS~g---~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 201 KLWDLSLG---VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred EEEEeccc---eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 99999654 3455555778899999999999999999999999988864321000 00 00001111111
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
..+.+++.+.+ |.+++ +|+.||.|+|||+.+.++++++.. ..+.|+.+ .+.|
T Consensus 278 ~~ITcLais~D---------gtlLl---SGd~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL-~i~~ 329 (476)
T KOG0646|consen 278 SAITCLAISTD---------GTLLL---SGDEDGKVCVWDIYSKQCIRTLQT-SKGPVTNL-QINP 329 (476)
T ss_pred cceeEEEEecC---------ccEEE---eeCCCCCEEEEecchHHHHHHHhh-hcccccee-Eeec
Confidence 12234454444 88888 999999999999999999999864 23566666 5544
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3e-23 Score=194.69 Aligned_cols=226 Identities=20% Similarity=0.274 Sum_probs=189.1
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
.+..|...|.|+..-..+ +.+++|+.|..+-+|.+........+ .+|..+|.+|.|++. ..+|++|+.+|+|++||+
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~-E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS-ERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc-hhhhcccccCCceeeeeh
Confidence 456699999999986666 79999999999999999887777766 789999999999999 999999999999999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
..++.++.+.++.. .+.++.|+|-+.+++.|+.|+.+.+||++...... ....|...+..+.|+| +|
T Consensus 100 eeAk~vrtLtgh~~---------~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP-~G 166 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLL---------NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSP-DG 166 (825)
T ss_pred hhhhhhhhhhcccc---------CcceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecC-CC
Confidence 99998888877654 48889999999999999999999999999655443 3334666789999999 99
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
.+++.|+.|.+++|||+..++. +..+ .|...|.++.|+|..-++++|+.|++|++||+++.+++......
T Consensus 167 r~v~~g~ed~tvki~d~~agk~---~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~------ 237 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKL---SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE------ 237 (825)
T ss_pred ceeeccCCcceeeeeccccccc---ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc------
Confidence 9999999999999999976554 4334 59999999999999999999999999999999977664432211
Q ss_pred cccCCceeEEecCC
Q 009022 404 NRHLTPFRAEWDPK 417 (546)
Q Consensus 404 ~~~~~~~~~~~~p~ 417 (546)
...+.+..|+|+
T Consensus 238 --~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 238 --TDGVRSLAFNPD 249 (825)
T ss_pred --cCCceeeeecCC
Confidence 222346778887
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=173.76 Aligned_cols=294 Identities=12% Similarity=0.127 Sum_probs=216.7
Q ss_pred CCCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEE
Q 009022 107 PGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHIL 186 (546)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 186 (546)
+.|....+..+++....++.++.+++..+....-... . .++.+.--..+|.+.+|.|+|...+
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~---------------~lqS~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--P---------------KLQSIHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--h---------------hheeeeeccCccceeeecCCCceEE
Confidence 5666778888888889999999888766654222111 1 1233444567999999999995589
Q ss_pred EEEcCCCcEEEEeCCCCceeEEec-ccCC-CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 187 LSGDKKGQVGVWDFYKVSEKIVYG-NIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 187 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
++++....++.||+.+.+....-. .++. ..+.....+|+ +++|+..+..|.|.+....++..+..++...
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~KieG------- 345 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFKIEG------- 345 (514)
T ss_pred EecccceEEEEeeccccccccccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheeeecc-------
Confidence 999999999999998866433321 2333 35777888999 8999999999999999999999988887654
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.|..++|+.+++.|++.+.+|.|++||++.......... ..+-.-++++.++ ++.+||+|+..|.|.|||..+.
T Consensus 346 ---~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 346 ---VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ---EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cCccceeeeeecC-CCceEEeccCcceEEEeccchh
Confidence 489999999999999999999999999998754433211 1112345677778 8999999999999999996532
Q ss_pred ---CCCceeeec-CCCCcEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCC
Q 009022 345 ---EAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ--DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 418 (546)
Q Consensus 345 ---~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (546)
...+++..+ .-...|++|.|+|++++||.+|. ...+++-.+.+...... ..... .....+.+++|+|.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN---fP~~n--~~vg~vtc~aFSP~- 493 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN---FPTSN--TKVGHVTCMAFSPN- 493 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc---CCCCC--CcccceEEEEecCC-
Confidence 222333333 45678999999999999988876 56788888765543221 11111 11222358999998
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
|-|++ .|...|.+.+|.+.
T Consensus 494 --------sG~lA---vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 --------SGYLA---VGNEAGRVHLFKLH 512 (514)
T ss_pred --------CceEE---eecCCCceeeEeec
Confidence 67777 79999999999874
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=175.18 Aligned_cols=254 Identities=17% Similarity=0.220 Sum_probs=191.1
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee-eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
--..+|.+++|+.. .+.||.+-.+|.|.+|++..+-... .+.++.. ..|.+++|+ ++..|++.+.+|.|
T Consensus 23 ~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d--------rsIE~L~W~-e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED--------RSIESLAWA-EGGRLFSSGLSGSI 92 (691)
T ss_pred eeccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCC--------CceeeEEEc-cCCeEEeecCCceE
Confidence 35678999999999 8889999999999999998764433 3333322 259999999 56668888889999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
.-||+.+.++.. .....++.|.+++.+| .+..++.|+.||.++.++................+.|.++.|+|++..
T Consensus 93 ~EwDl~~lk~~~---~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 93 TEWDLHTLKQKY---NIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred EEEecccCceeE---EecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence 999999876543 4455567999999999 889999999999888888754333221111245689999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
|++|+.||.|++||+.++.... +......+... .-.+.|+-. +...+. ++ +|...|+|++||...
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~-----~~~~~~d~l~k~~~~iVWSv~-----~Lrd~t-I~---sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLH-----IITMQLDRLSKREPTIVWSVL-----FLRDST-IA---SGDSAGTVTFWDSIF 234 (691)
T ss_pred EEecccCceEEEEEcCCCceEE-----EeeecccccccCCceEEEEEE-----EeecCc-EE---EecCCceEEEEcccC
Confidence 9999999999999998876432 11111111111 124555432 122233 33 688889999999999
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
|++++.+..|. ..+.++ +..+++.+|++++ |+.|..+...+...
T Consensus 235 gTLiqS~~~h~-adVl~L-av~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 235 GTLIQSHSCHD-ADVLAL-AVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cchhhhhhhhh-cceeEE-EEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 99999998887 777788 8999999999999 99999998876643
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.4e-20 Score=157.07 Aligned_cols=298 Identities=18% Similarity=0.186 Sum_probs=198.8
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce------eeeeecCCCCCCCCCcccceEEEEecC-CCCEEEE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA------LSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLV 283 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 283 (546)
..|.+.|+++...+..++++++|+.||.|.+||++.... +..-...-...+...+...|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458999999999998899999999999999999985431 111111001112223334688889988 6778889
Q ss_pred EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC--CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEE
Q 009022 284 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 361 (546)
Q Consensus 284 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 361 (546)
++-|..+++||..+.+.. ......+.|++-+++|.. .-++|+|..+-.|++-|+..+.....+ .+|...|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a----~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L--sGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA----VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL--SGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceee----EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee--ccccCceEE
Confidence 999999999999986543 223344578888888833 347888889999999999765553333 389999999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEECCCCC-CCC------CCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeec
Q 009022 362 AYFSPSGS-KILTTSQDNRLRIWDSIFGN-LDS------PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISEN 433 (546)
Q Consensus 362 ~~~~p~~~-~l~s~s~dg~i~vwd~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 433 (546)
+.|+|... .|++|+.||.|++||++... +.. ..+.++.............++|..+ |.+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd---------~~~l~-- 262 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD---------ARYLA-- 262 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc---------chhhh--
Confidence 99999554 57899999999999997531 100 0011111111122222345677666 88887
Q ss_pred CCCCcCcceEEEECCchhhhHhhcC---CCCCcccceeeecCCCcEEE-EecCCcEEEEcCCCCCccceeeccceEEEee
Q 009022 434 YNGAALHPIDFIDITTGQLVAEVMD---PNITTISPVNKLHPRDDVLA-SGSSRSIFIWRPKEKSELVEQKEEMKIIVCG 509 (546)
Q Consensus 434 ~~g~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~v~~~s~~~~~l~-sgsdg~i~vwd~~~~~~~~~~~~~~~~i~~~ 509 (546)
+.+.|..+++|+...|+....-.+ ++...-..+..-+.+...++ .-.++.+.++.+-+|..++.+..|...+.|.
T Consensus 263 -~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~ 341 (397)
T KOG4283|consen 263 -SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA 341 (397)
T ss_pred -hccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE
Confidence 788899999999998864322111 11111111100022222222 2237999999999999999999999999998
Q ss_pred ccccccccccCCCCCCC
Q 009022 510 KADKKQKHKFGDESEDS 526 (546)
Q Consensus 510 ~~~~~~~~~~~~~~d~~ 526 (546)
......+..+.++-|.+
T Consensus 342 ~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGN 358 (397)
T ss_pred eecCchhhhhccccCCc
Confidence 77766655555544433
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=3e-20 Score=174.46 Aligned_cols=267 Identities=12% Similarity=0.116 Sum_probs=181.5
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEE-EeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA-ASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iw 242 (546)
..+.+|. .+.+++|+|++..++++++.++.|++||+.+++....+. .+. .+..++|+|+ ++.+++ ++.++.|++|
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~-g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGP-DPELFALHPN-GKILYIANEDDNLVTVI 100 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCC-CccEEEECCC-CCEEEEEcCCCCeEEEE
Confidence 4455443 467899999995445778889999999999877665552 333 3567899999 666654 5568999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|+.+.+.+..+.... .+.+++|+|++.+++++..++ .+.+||..+....... .....+..++|+|
T Consensus 101 d~~~~~~~~~~~~~~----------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~s~ 166 (300)
T TIGR03866 101 DIETRKVLAEIPVGV----------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV----LVDQRPRFAEFTA 166 (300)
T ss_pred ECCCCeEEeEeeCCC----------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE----EcCCCccEEEECC
Confidence 999887766554221 257799999999999988765 4677898765433211 1122467899999
Q ss_pred CCCCEEEE-EeCCCeEEEEECCCCCCCceeeecC---C--CCcEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCCCCCCC
Q 009022 322 IQPELLLS-CGNDHFARIWDIRRLEAGSSLCDLP---H--KRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 322 ~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~---~--~~~v~~~~~~p~~~~l~s-~s~dg~i~vwd~~~~~~~~~~ 394 (546)
++.+|++ +..++.|++||+.+.+....+.... + ......++|+|+++++++ .+.++.|.+||+.+++....
T Consensus 167 -dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~- 244 (300)
T TIGR03866 167 -DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY- 244 (300)
T ss_pred -CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-
Confidence 8887754 4568999999998765433332111 1 112356889999998655 44567899999987764221
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
.. ....+..+.|+|+ |.+++. +...++.|.|||+.+++++..+..+ .....+ +++|
T Consensus 245 ---~~-----~~~~~~~~~~~~~---------g~~l~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~ 300 (300)
T TIGR03866 245 ---LL-----VGQRVWQLAFTPD---------EKYLLT--TNGVSNDVSVIDVAALKVIKSIKVG--RLPWGV-VVRP 300 (300)
T ss_pred ---EE-----eCCCcceEEECCC---------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEcc--ccccee-EeCC
Confidence 10 1113457889998 555541 2356889999999999988887643 333555 5554
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=7.6e-21 Score=166.33 Aligned_cols=211 Identities=21% Similarity=0.319 Sum_probs=169.9
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce------eEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
.+.||+++|..++|+|.+++.+|+|+.|.+|.||.+..+.. ....+.+|...|..++|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 47799999999999999889999999999999999875432 233337899999999999998899999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
|.+||+.+|..+..+. |+. .|++++|+.+|.+|++++.|..|++||.+++.....- ..|... .-..+.
T Consensus 156 v~iWnv~tgeali~l~-hpd---------~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Rai 223 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPD---------MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARAI 223 (472)
T ss_pred EEEEeccCCceeeecC-CCC---------eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-CcceeE
Confidence 9999999999887765 333 5999999999999999999999999999998876543 333333 334445
Q ss_pred ECCCCCCEEEEEe---CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCC
Q 009022 319 CNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFG 388 (546)
Q Consensus 319 ~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~ 388 (546)
|.. ++.++.+|. .+.++-+||..+......+..+..+..|.---|.|+.++++.+ -.|+.|+.|.+..-
T Consensus 224 fl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 224 FLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred Eec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555 677555553 4678999999887777666667677778777788888877555 46999999998754
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.5e-20 Score=172.83 Aligned_cols=267 Identities=13% Similarity=0.129 Sum_probs=181.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE-ecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.....|...|..+.|.| |...|++++.|.++++||+.+...... +..+|.+.|.+++|.|.+...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 34556999999999999 667899999999999999998876654 3378999999999999989999999999999999
Q ss_pred ECCCCceee-------eeecCCC------C-----CCCCCcccceEE---EEecCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 009022 243 DLETGLALS-------LMNVNPN------G-----WHGPRTWRMLYG---MDINPEKGVVLVADN-FGFLYLVDARTNSR 300 (546)
Q Consensus 243 d~~~~~~~~-------~~~~~~~------~-----~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~ 300 (546)
|++-...-. ....+.. + .........|.+ +.+..|...||+++. |+.|++||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 997443110 0000000 0 000111123333 455667788888776 99999999998654
Q ss_pred CcceE-----EeecC---CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCC--CcEEEEEEeCCCCE
Q 009022 301 SGEAI-----LIHRK---GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK--RVVNSAYFSPSGSK 370 (546)
Q Consensus 301 ~~~~~-----~~~~~---~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ 370 (546)
..... ..+.+ ...+.++.... .|.+|++.+.|+.|++|+++...........++. ..-..-..+|++.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 32211 11112 23577777776 6677777777999999999876543333222222 11223346889999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
|++|+.|....+|.+.+-..-. ..-..+.....++.|.|..... .+ +.+.|..++||++..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~-------~~l~Ght~eVt~V~w~pS~~t~-------v~----TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPP-------ALLLGHTREVTTVRWLPSATTP-------VA----TCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCccCCh-------hhhhCcceEEEEEeeccccCCC-------ce----eeccCcceEEEeccCc
Confidence 9999999999999998655311 1111222334578898875322 22 4588999999999654
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.3e-22 Score=188.73 Aligned_cols=197 Identities=20% Similarity=0.290 Sum_probs=169.3
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..|.+|..+|-||.|++.. .+|++|+.+|+|++||+........+ .+|...+..+.|+|. +.++++|+.|+.+++||
T Consensus 64 ~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY-GEFFASGSTDTDLKIWD 140 (825)
T ss_pred heeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc-eEEeccccccccceehh
Confidence 3588999999999999998 79999999999999999988877777 799999999999999 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
++...+...+..+.. .+..+.|+|+|+++++++.|..+++||+..++... .+..|.+.+..+.|+| .
T Consensus 141 ~Rk~Gc~~~~~s~~~---------vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef~~~e~~v~sle~hp-~ 207 (825)
T KOG0267|consen 141 IRKKGCSHTYKSHTR---------VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHP-L 207 (825)
T ss_pred hhccCceeeecCCcc---------eeEEEeecCCCceeeccCCcceeeeeccccccccc---ccccccccccccccCc-h
Confidence 998878877765443 48999999999999999999999999998877654 3355667899999999 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
.-++++|+.|++|++||+++....... .+....|.++.|+|++..+++|....
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVISSG--KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEeecc--CCccCCceeeeecCCceeeecCchhh
Confidence 889999999999999999754432211 14577899999999999998886553
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.5e-20 Score=158.41 Aligned_cols=251 Identities=14% Similarity=0.120 Sum_probs=179.5
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009022 217 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 296 (546)
Q Consensus 217 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 296 (546)
..|+.|++. |.+||+|+.||.|.|||+.|...-+.+..|.. +|.+++||++|+.|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~---------pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR---------PITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhcccc---------ceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 689999999 99999999999999999999887666655543 59999999999999999999999999999
Q ss_pred CCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC----CCCcEEEEEEeCCCCEEE
Q 009022 297 TNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP----HKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~ 372 (546)
.+....++ ....+|....|+|.+.+.+++.-.+..-.+-++..+. ..+.... ....-.+..|.+.|++++
T Consensus 96 ~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 96 KGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CCCceeEE----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEE
Confidence 98855432 2344899999999666666655555555566654311 1221111 111223346889999999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc---
Q 009022 373 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--- 449 (546)
Q Consensus 373 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~--- 449 (546)
+|...|.+.+++..+.+++...+... ....-.+.++- .|++++ .-+.|..|+.|+++.
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits-------~~~IK~I~~s~---------~g~~li---iNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITS-------VQAIKQIIVSR---------KGRFLI---INTSDRVIRTYEISDIDD 230 (405)
T ss_pred EecCcceEEEEecchheeeeeeeech-------heeeeEEEEec---------cCcEEE---EecCCceEEEEehhhhcc
Confidence 99999999999999877654332211 11111222222 377777 678899999999862
Q ss_pred ----h--hhhHhhcCC-CCCcccceeeecCCCcEEEEec--CCcEEEEcCCCCCccceeeccc
Q 009022 450 ----G--QLVAEVMDP-NITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 450 ----~--~~~~~~~~~-~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+ ++...++.- +......+ +||.+|.|++.|+ -..++||.-..|.+++.+.+..
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~c-cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKC-CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhhe-eecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 1 122333211 11223344 7999999999988 5899999999999999888766
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.5e-20 Score=174.10 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=121.5
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceee----e-cCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC----D-LPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~-~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~ 385 (546)
..|+.++|.|.+...|++++.||.|++|.+.......... . ..|...|+++.|+| -...|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3588899999999999999999999999987644322111 1 26889999999999 7788999999999999999
Q ss_pred CCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh-hhHhhcCCCCCcc
Q 009022 386 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNITTI 464 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~i 464 (546)
.+++... .-.++...++.++|+|+ |+.++ +.+.||+|+||+.+++. .++.-.+.-...-
T Consensus 708 ~~~~~~~--------~l~gHtdqIf~~AWSpd---------Gr~~A---tVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 708 ANAKLYS--------RLVGHTDQIFGIAWSPD---------GRRIA---TVCKDGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred hhhhhhh--------eeccCcCceeEEEECCC---------Cccee---eeecCceEEEeCCCCCCCccccCCCCccCcc
Confidence 9877522 11223334578999999 88888 88999999999998764 4444333332222
Q ss_pred cceeeecCCCcEEEEec-C----CcEEEEcCCCC
Q 009022 465 SPVNKLHPRDDVLASGS-S----RSIFIWRPKEK 493 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgs-d----g~i~vwd~~~~ 493 (546)
..+ .|.-+|++|++.+ | ..|.+|+.++.
T Consensus 768 ARi-~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 768 ARI-LWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eeE-EEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 233 6888999988866 5 67888987654
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.6e-21 Score=190.47 Aligned_cols=292 Identities=18% Similarity=0.278 Sum_probs=204.4
Q ss_pred EEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCcee----EEecccCCCceEEEEEecCCCC---EEEEEeCCC
Q 009022 175 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEK----IVYGNIHSCIVNNIRFNPTNDG---TVYAASSDG 237 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~dg 237 (546)
.++|+|.+..+|++|. .+.++-||.+...... ..-........+.++|.+.+.. +|+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 4689999865777663 3556667665432211 1111224557789999988433 488899999
Q ss_pred eEEEEECCCC---ceeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 238 TVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 238 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
.|.+||...- .....+.. . ..+...|..+.|++... +||+|+.+|.|.|||+.......... .......
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~-~-----~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~e 163 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLAT-K-----SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSE 163 (1049)
T ss_pred ceEEecchhhccCcchHHHhh-h-----cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCccc
Confidence 9999998752 21111111 1 11223599999999755 99999999999999999865544332 2223457
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC-CCEEEEEeCCC---cEEEEECCCCC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDN---RLRIWDSIFGN 389 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~s~s~dg---~i~vwd~~~~~ 389 (546)
|.+++|+.....+|++++.+|.+.|||+|..+....+...+....+..+.|+|+ ...|++++.|. .|.+||++.-.
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 999999987778999999999999999997655444443344456889999994 45677776653 59999987533
Q ss_pred CCCCCcceeeccCC-cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccccee
Q 009022 390 LDSPSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 468 (546)
Q Consensus 390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~ 468 (546)
. +.+ .+ .+...++++.|++.+ .+++. +.+.|+.|.+|+.++|+.+..+.... ..+..+
T Consensus 244 s--P~k------~~~~H~~GilslsWc~~D--------~~lll---SsgkD~~ii~wN~~tgEvl~~~p~~~-nW~fdv- 302 (1049)
T KOG0307|consen 244 S--PLK------ILEGHQRGILSLSWCPQD--------PRLLL---SSGKDNRIICWNPNTGEVLGELPAQG-NWCFDV- 302 (1049)
T ss_pred C--chh------hhcccccceeeeccCCCC--------chhhh---cccCCCCeeEecCCCceEeeecCCCC-cceeee-
Confidence 2 111 11 222334789999985 34554 78899999999999999999986633 666677
Q ss_pred eecCCCc-EEEEec-CCcEEEEcCCCCC
Q 009022 469 KLHPRDD-VLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 469 ~~s~~~~-~l~sgs-dg~i~vwd~~~~~ 494 (546)
.|.|... .++.++ ||.|.|+.+..+.
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecCC
Confidence 8999887 666677 9999999987654
No 156
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=165.85 Aligned_cols=308 Identities=20% Similarity=0.338 Sum_probs=226.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 242 (546)
..|.+|.+.|..|.|+..| ..|++|+.|..|.+||+........+..+|...|....|.|.. ...+++++.||.+++=
T Consensus 136 ~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4578899999999999999 6899999999999999999998888889999999999999873 4578999999999988
Q ss_pred ECCCC-ceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC---cEEEE
Q 009022 243 DLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS---KVVGL 317 (546)
Q Consensus 243 d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~i~~~ 317 (546)
.+... .+..+.... .+..+|..++.-|+ ...|.+++.|+.+.-+|++..........-..+.. ....+
T Consensus 215 ~i~~t~~~e~t~rl~-------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 215 EILETGYVENTKRLA-------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred eeccccceecceecc-------cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 76533 333222221 11125888888886 45688899999999999998776554432222222 57789
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCc---eeeec-------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGS---SLCDL-------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~-------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+..|.+.+.+++|+.|..+++||.+...... .+..+ .....|++++|+.++.-|+++-.|-.|++|.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 9999778899999999999999987543321 11111 2345799999998777777777788899995544
Q ss_pred CCCCCCCcc----eeeccCCcccCCc--e-e-EEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 388 GNLDSPSRE----IVHSHDFNRHLTP--F-R-AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 388 ~~~~~~~~~----~~~~~~~~~~~~~--~-~-~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
+....+... ......+.+|... + . --|-|. ..|+. +|+..|.|.||+-.+++.+..+.+.
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr---------sEyVv---SGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR---------SEYVV---SGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCc---------cceEE---ecCccceEEEEecchhHHHHHhhcc
Confidence 332111110 0111112222211 1 1 235555 67777 8999999999999999999999887
Q ss_pred CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 460 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
+. .|.|| .-+|--.+||+++ |.-|+||-..+.
T Consensus 436 r~-VVNCL-EpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 436 RH-VVNCL-EPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cc-eEecc-CCCCCCchhhccCCccceeeecCCcc
Confidence 74 77777 8899999999999 999999998543
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=8.4e-20 Score=156.16 Aligned_cols=302 Identities=14% Similarity=0.215 Sum_probs=211.5
Q ss_pred eeccccCCCeEEEEEcC----CCCcEEEEEcCCCcEEEEeCCCCcee---EEec-ccCCCceEEEEEecC---CCCEEEE
Q 009022 164 AVIRYHSRRVTCLEFHP----TNNHILLSGDKKGQVGVWDFYKVSEK---IVYG-NIHSCIVNNIRFNPT---NDGTVYA 232 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~~---~~~~l~s 232 (546)
+....|..+|..++|++ +....+|+.|.+ .+.||........ ..+. ..|......++|+-+ +..++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45667999999999985 333567777754 7889987654322 2222 236777888899765 2558888
Q ss_pred EeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC
Q 009022 233 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 311 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 311 (546)
++.-|.|+|.|+.+++....+..+.. .|+.|.+.|+ .+++++++.|..|++|++++...+..+--..+|.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~---------sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGG---------SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCc---------cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 99999999999999999888877665 4899999996 5789999999999999999987665444456788
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc----------------------eeee----cCCCCcEEEEEEe
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS----------------------SLCD----LPHKRVVNSAYFS 365 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------~~~~----~~~~~~v~~~~~~ 365 (546)
..|.++.|++ ++.+|++++.|.+|++|++...+... .+.. --|...|-|+.|
T Consensus 182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw- 259 (385)
T KOG1034|consen 182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW- 259 (385)
T ss_pred CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH-
Confidence 8999999999 99999999999999999997321100 0111 126666777777
Q ss_pred CCCCEEEEEeCCCcEEEEEC-CCCCC---C-CCCcceeeccCCcccC-C--ceeEEecCCCCCCceeEEeeeeeecCCCC
Q 009022 366 PSGSKILTTSQDNRLRIWDS-IFGNL---D-SPSREIVHSHDFNRHL-T--PFRAEWDPKDPSESLAVIGRYISENYNGA 437 (546)
Q Consensus 366 p~~~~l~s~s~dg~i~vwd~-~~~~~---~-~~~~~~~~~~~~~~~~-~--~~~~~~~p~~~~~~~~~~g~~~~~~~~g~ 437 (546)
-|.++++-|-++.|..|.. +-.+. + .+.........+.-.. . .+..++.|- +++++ .|.
T Consensus 260 -~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---------~~~la---~gn 326 (385)
T KOG1034|consen 260 -FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---------QKMLA---LGN 326 (385)
T ss_pred -HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---------HHHHh---hcc
Confidence 4789999999999999987 22221 1 1111111111111111 1 133444554 66666 789
Q ss_pred cCcceEEEECCchhhhH--hhcCC-CCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 438 ALHPIDFIDITTGQLVA--EVMDP-NITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 438 ~d~~i~iwd~~~~~~~~--~~~~~-~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
..|.|.+||+....... ++..+ ....|... +|+.+|.+|+... |++|.-||..
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~-sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT-SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeee-eecccCcEEEEEeCCCcEEEEEee
Confidence 99999999998776532 22222 22344444 8999999998877 9999999853
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=152.46 Aligned_cols=293 Identities=16% Similarity=0.173 Sum_probs=199.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..|++|.+.|+|+.|-.++ + |++|..-|.|++|.+++......+...+...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 8 fvLRp~~~~v~s~~fqa~~-r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-R-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWT 83 (323)
T ss_pred eEeccccchheehhhccch-h-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEE
Confidence 5677999999999999887 4 9999999999999999988887775578889999998884 6888999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEec-----CCCC----EEEEEeCCC-cEEEEeCCCCCCCcce-EEeecCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-----PEKG----VVLVADNFG-FLYLVDARTNSRSGEA-ILIHRKGS 312 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~-~~~~~~~~ 312 (546)
+..+..+..-.. .++++.|. ++++ .++.-+... .+.+-|.......... -......+
T Consensus 84 ia~s~~i~i~Si------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 84 IAYSAFISIHSI------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred ccCcceEEEeee------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 987655543222 13333332 2221 112111110 1222222111110000 00112234
Q ss_pred cEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCCCC-------c-eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEE
Q 009022 313 KVVGLHCNPIQPE--LLLSCGNDHFARIWDIRRLEAG-------S-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 382 (546)
Q Consensus 313 ~i~~~~~~p~~~~--~l~~~~~dg~i~iwd~~~~~~~-------~-~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~v 382 (546)
.+.+..+....+. ++++|..+|.+.+||+.+.... + ......|..+|.++.+.+.-..=++|+.+..+..
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 5666665432333 5677889999999999875211 1 1112258999999999986666688888889999
Q ss_pred EECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCC
Q 009022 383 WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT 462 (546)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 462 (546)
|++......-+.+... ..-+|.-....+..+++.+| +++.|+.||||+.+++.++..+.-|. .
T Consensus 232 ~Sl~~s~gslq~~~e~-------------~lknpGv~gvrIRpD~KIlA---TAGWD~RiRVyswrtl~pLAVLkyHs-a 294 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEI-------------TLKNPGVSGVRIRPDGKILA---TAGWDHRIRVYSWRTLNPLAVLKYHS-A 294 (323)
T ss_pred eeeccccCcccccceE-------------EecCCCccceEEccCCcEEe---ecccCCcEEEEEeccCCchhhhhhhh-c
Confidence 9986432211111111 11123333344444588898 99999999999999999999998888 8
Q ss_pred cccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 463 TISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 463 ~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
.+.++ +|+|+..++|+++ |++|.+|++
T Consensus 295 gvn~v-Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAV-AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEE-EeCCCCchhhhccCCceEEeeec
Confidence 89998 9999999999999 999999986
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.4e-19 Score=151.82 Aligned_cols=273 Identities=14% Similarity=0.193 Sum_probs=182.7
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCc
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGF 289 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 289 (546)
.+|...|++++|+.+ |.+|++++.|++|++|+++.-........... -.....+.+.|.||.+-+++... ...
T Consensus 83 KgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-----ve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQN-----VEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcc-----ccCCCceEEEECCCcceEEEEEccCCE
Confidence 789999999999999 99999999999999999985322111000000 01113678999999887777654 458
Q ss_pred EEEEeCCCCC---CCcceEEe------ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcE
Q 009022 290 LYLVDARTNS---RSGEAILI------HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVV 359 (546)
Q Consensus 290 i~i~d~~~~~---~~~~~~~~------~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 359 (546)
+++|.+...+ ........ ..|...+..+-... ++.+|++++.|..|.||+++ ++.+... .....-
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk----Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK----GQLLQSIDTNQSSN 231 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC----Cceeeeeccccccc
Confidence 8888765422 11111111 12344566666666 78899999999999999996 3344433 233445
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCc-eeEEecCCCCCCceeEEeeeeeecCCCCc
Q 009022 360 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAA 438 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~g~~ 438 (546)
+..+.+|+|++|++++.---|+||.+-.++- ....++.....+.+|... ..++|+|+ ...++ +.+.
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~v---tvSk 298 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAV---TVSK 298 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhhhhhhheeccchhheeeeeeCCC---------cceeE---EEec
Confidence 6678999999999999999999999854331 112222333444455443 56788887 44444 6789
Q ss_pred CcceEEEECCc-------hhhhHhhc---CCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCCCccceee-ccceEEE
Q 009022 439 LHPIDFIDITT-------GQLVAEVM---DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQK-EEMKIIV 507 (546)
Q Consensus 439 d~~i~iwd~~~-------~~~~~~~~---~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~~~~-~~~~~i~ 507 (546)
||+++|||+.- .+.+.... ......-+.+ +.+|+|..||.+....|.++..++|+...++. .|..-|.
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL-~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL-ELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE-EeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCcee
Confidence 99999999852 23333331 1112223344 89999999999888899999999998776663 4554444
Q ss_pred e
Q 009022 508 C 508 (546)
Q Consensus 508 ~ 508 (546)
|
T Consensus 378 ~ 378 (420)
T KOG2096|consen 378 S 378 (420)
T ss_pred e
Confidence 3
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.3e-20 Score=165.16 Aligned_cols=266 Identities=14% Similarity=0.174 Sum_probs=193.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
.|.++.|+....-.+++.+.|..+++|.-.... .+..+.......-.|++.... ..++++|+..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHh
Confidence 388999988762223444567889999754431 122221222234455555555 689999999999999999976666
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
+.++.|.. .|+++.++....+||+++..|.|.+..+.++.....+ .+..+..|.-+.|+|....+|.++
T Consensus 115 r~lkdh~s---------tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 115 RFLKDHQS---------TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred hhccCCcc---------eeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeEEEeecccccceeeEee
Confidence 66655543 5999999999999999999999999999987665432 233344678999999666778889
Q ss_pred eCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC
Q 009022 331 GNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 408 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 408 (546)
+.+|.|.+||+....+ .+... .|..+...|+|+| +..+|++.+.|..|.+||+...+... .+...+.+
T Consensus 184 sd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~y~~Pl----- 253 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLTYSHPL----- 253 (673)
T ss_pred ccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc---eeeecCCc-----
Confidence 9999999999975444 22222 6999999999999 77889999999999999998655422 11112211
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh-hhHhhcCCCCCcccceeeecCCC
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
..++|.++ |.+++ .|...|.|..||++.-+ ++..+..|. ..|.++ +|-|.-
T Consensus 254 -stvaf~~~---------G~~L~---aG~s~G~~i~YD~R~~k~Pv~v~sah~-~sVt~v-afq~s~ 305 (673)
T KOG4378|consen 254 -STVAFSEC---------GTYLC---AGNSKGELIAYDMRSTKAPVAVRSAHD-ASVTRV-AFQPSP 305 (673)
T ss_pred -ceeeecCC---------ceEEE---eecCCceEEEEecccCCCCceEeeecc-cceeEE-Eeeecc
Confidence 25777877 88888 89999999999998654 555555554 678888 887653
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=5e-20 Score=161.95 Aligned_cols=299 Identities=13% Similarity=0.148 Sum_probs=201.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee--------EEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--------IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
..+|.++.|.++....|+||+.|..|+||-+...... ......|...|+++.|+|+ +.+|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 4589999999987558999999999999998653211 1122679999999999999 999999999999999
Q ss_pred EECCCC----------------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 242 TDLETG----------------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 242 wd~~~~----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
|-...- .....+.. +...++.++|+|++.++++++.|..+++||+..++...
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~--- 159 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRG---------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA--- 159 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecc---------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---
Confidence 976520 01111111 12258899999999999999999999999999987653
Q ss_pred EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceee------------------ec---CCCCcEEEEEE
Q 009022 306 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC------------------DL---PHKRVVNSAYF 364 (546)
Q Consensus 306 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~---~~~~~v~~~~~ 364 (546)
....|...+..++|.| -++++++-+.|...+++.+........+. .+ ........++|
T Consensus 160 ~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 3455666899999999 88999999888877777664322211111 00 01223556889
Q ss_pred eCCCCEEEEEeC----CCcE-----EEEECCCCCCCCCCcceeeccCCcccCCceeEEecC-------CCCCC--ceeEE
Q 009022 365 SPSGSKILTTSQ----DNRL-----RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-------KDPSE--SLAVI 426 (546)
Q Consensus 365 ~p~~~~l~s~s~----dg~i-----~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~--~~~~~ 426 (546)
+|+|.+|++.+. .+.+ ++|+- +.+. +........... .+.+.++| ..... .....
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsr---k~l~--rP~~~lp~~~k~--~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSR---KDLK--RPAARLPSPKKP--ALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeecc---cccc--CceeecCCCCcc--eEEEEeeeeEEEecccccccccccccc
Confidence 999999998643 2222 23321 1111 111111111111 11222222 11111 01111
Q ss_pred eeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 427 GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 427 g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+..+ .-...+.|.|||+++-.++..+..-|-..++.+ +|+++|.+|+..| ||...+--+...+
T Consensus 312 rlvf----aiAt~~svyvydtq~~~P~~~v~nihy~~iTDi-aws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVF----AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDI-AWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEE----EEeecceEEEeccccccceEEEeeeeeeeecce-eecCCCcEEEEeccCCceEEEEEcchh
Confidence 2222 234457799999999998888877777889998 9999999999999 9998888776654
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.7e-19 Score=151.53 Aligned_cols=212 Identities=19% Similarity=0.277 Sum_probs=159.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCC-------CcEEEEeCCCCc---------eeEEecccCCCceEEEEEecCCC
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKK-------GQVGVWDFYKVS---------EKIVYGNIHSCIVNNIRFNPTND 227 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~ 227 (546)
..|..|.+.|..|+-+|...++|+|+..+ -.+.||.+.... ++..+...+-+.|.|+.|.|+ +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-s 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-S 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-C
Confidence 56778999999999999888888887652 247899986532 223333346678999999998 8
Q ss_pred CEEEEEeCCCeEEEEECCCCcee-eeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCcce
Q 009022 228 GTVYAASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEA 304 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 304 (546)
..+++.. |..|.+|++..+..+ ..+...... . .....++-+|+| +++.+++ ..+++++.||+++......+
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e--~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--E--MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccc--c--ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcch
Confidence 8887776 788999999987763 333222111 1 112477788998 4555554 55799999999998766554
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEE
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRI 382 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~v 382 (546)
...|++ .|..+.|+|....+|++++.||.|+|||.|..+. .+..+ +|..+|.++.|+| ..++|++|+.|..|.+
T Consensus 210 ~dAHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 210 EDAHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence 444444 8999999996667899999999999999996443 44444 8999999999999 6778899999999999
Q ss_pred EECC
Q 009022 383 WDSI 386 (546)
Q Consensus 383 wd~~ 386 (546)
|-..
T Consensus 286 sca~ 289 (370)
T KOG1007|consen 286 SCAS 289 (370)
T ss_pred Eecc
Confidence 9764
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=6.4e-20 Score=170.91 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=206.8
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.|..++|-|+|..+++.++ ..+.|||...+.....+ ++|...|.+++|+.+ |..+++|+.|..|.+|+-.-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtL-KgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccccc-ccccceEEEEEEccC-CceeccCCCceeEEEeccccccee-
Confidence 7999999999976666554 47999999999888888 899999999999999 999999999999999986533222
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
+. ++...|.||.|+|-...|++++- ...-+|........ -+.....+.+.+|.. +|++|+.|-
T Consensus 89 --kY--------SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-----K~kss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 89 --KY--------SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-----KHKSSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred --ee--------ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-----hhhhheeEEEeeecC-CCcEEEEec
Confidence 21 12236999999999999988875 34567766543322 133344789999999 999999999
Q ss_pred CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 332 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-----SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
.+|+|.|-+-........-+.-+..++|.+++|+|+. ..+++.....++.++.+. |+++...+ .. .
T Consensus 152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r----~L----~ 222 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR----AL----N 222 (1081)
T ss_pred cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc----cC----C
Confidence 9999999865433322222223678899999999943 478888888999999875 33322211 11 1
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcE
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 485 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i 485 (546)
..|.++.|.|+ |.|+. .|+.++.+.+|-- .|-.+.++.. ....|.++ +..|++++++.|. ||+|
T Consensus 223 FdP~CisYf~N---------GEy~L---iGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV-~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 223 FDPCCISYFTN---------GEYIL---LGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTV-QAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CCchhheeccC---------CcEEE---EccCCCceEEEee-cCeEEeeccc-cceeEEEE-EEccCCceEEEEEccCee
Confidence 22346777777 88888 7899999999853 5555666643 44678888 8999999999999 9999
Q ss_pred EEEcCCCC
Q 009022 486 FIWRPKEK 493 (546)
Q Consensus 486 ~vwd~~~~ 493 (546)
..|++...
T Consensus 288 ACyNl~fS 295 (1081)
T KOG1538|consen 288 ACYNLIFS 295 (1081)
T ss_pred ehhhhHHh
Confidence 99997543
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.8e-19 Score=150.90 Aligned_cols=264 Identities=13% Similarity=0.163 Sum_probs=183.1
Q ss_pred CCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC--CCC
Q 009022 107 PGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP--TNN 183 (546)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~ 183 (546)
.+|.. +.+..+...+-.+++++.+++.++|++..... +-.+-...+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---------------~W~~Ts~Wrah~~Si~rV~WAhPEfG- 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---------------TWSCTSSWRAHDGSIWRVVWAHPEFG- 73 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---------------ceEEeeeEEecCCcEEEEEecCcccc-
Confidence 34552 33444445567788888899999997522111 1123356788999999999965 36
Q ss_pred cEEEEEcCCCcEEEEeCCCC--c------eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 184 HILLSGDKKGQVGVWDFYKV--S------EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~--~------~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
+.+|+++.|+++.||.-... + ............|+.|+|.|.. +-.|++++.||.|+||+....-.+....
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 79999999999999975311 1 1112224567889999999974 6678999999999999876543333222
Q ss_pred cCCC----CCCCCCcccceEEEEecCC---CCEEEEEeCC-----CcEEEEeCCCCC-CCcceEEeecCCCcEEEEEECC
Q 009022 255 VNPN----GWHGPRTWRMLYGMDINPE---KGVVLVADNF-----GFLYLVDARTNS-RSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 255 ~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~i~~~~~~p 321 (546)
+... ......+.....|+.|+|. ..+|++|+.+ +.+.||...... .....-.+..+..+|++|+|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2110 0011122335789999873 5688888766 578888765543 3333444557888999999999
Q ss_pred CCC---CEEEEEeCCCeEEEEECCCCC-----------------CCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcE
Q 009022 322 IQP---ELLLSCGNDHFARIWDIRRLE-----------------AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRL 380 (546)
Q Consensus 322 ~~~---~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i 380 (546)
.-+ .+||+++.|| |+||.+.... ....+..+ .|.+.|..+.|+-.|..|++.+.||+|
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 544 3789999999 9999987311 01222223 699999999999999999999999999
Q ss_pred EEEECCC
Q 009022 381 RIWDSIF 387 (546)
Q Consensus 381 ~vwd~~~ 387 (546)
++|...-
T Consensus 313 RLWkany 319 (361)
T KOG2445|consen 313 RLWKANY 319 (361)
T ss_pred eehhhhh
Confidence 9998653
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4.1e-19 Score=158.59 Aligned_cols=290 Identities=18% Similarity=0.183 Sum_probs=200.0
Q ss_pred ccccccccccC--CccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEE
Q 009022 112 MSCPHRVATEY--GVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSG 189 (546)
Q Consensus 112 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~ 189 (546)
+.+..+++... .++++.+-+.+.+|++.. ..+...-+..+..|.++|.+|.|+|.+...+++.
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~---------------~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGT---------------QEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCC---------------CCCccCceEEeccCCccccceEecCCChhheeee
Confidence 34445555443 455566777788887641 1122233466889999999999999887889999
Q ss_pred cCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCCCCCCCCCccc
Q 009022 190 DKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWR 267 (546)
Q Consensus 190 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 267 (546)
+.||+|++-|+++......+. ......+..+.|+.. ...++.+..=|.+.+||++++.. ...+..+..
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--------- 323 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--------- 323 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhc---------
Confidence 999999999998765443332 124456777888887 66666676667999999998765 334444433
Q ss_pred ceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcc-eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC---
Q 009022 268 MLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR--- 342 (546)
Q Consensus 268 ~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~--- 342 (546)
.|.+++++|- ..+|++++.|++++|||++....... ++....|...|.+..|+| .+..|++.+.|..|+|||..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP-s~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP-SGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC-CCCceEeeccCCceEEeeccccc
Confidence 4999999995 56788999999999999998654442 455666777999999999 44449999999999999983
Q ss_pred -CCCCCceeeecCCC----Cc--EEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEec
Q 009022 343 -RLEAGSSLCDLPHK----RV--VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 415 (546)
Q Consensus 343 -~~~~~~~~~~~~~~----~~--v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (546)
...+ +..+.|. .+ .....|.|+..+|++|-.-..|-|+|-..++++... +.-....-+-...|+
T Consensus 403 a~~~p---~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el------~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 403 AKDEP---LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL------HDPESSTIPSVNEFH 473 (498)
T ss_pred ccCCc---cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec------cCccccccccceeec
Confidence 2121 1112222 12 234679999999999999999999999887743221 111111111235788
Q ss_pred CCCCCCceeEEee-eeeecCCCCcCcceEEEECC
Q 009022 416 PKDPSESLAVIGR-YISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 416 p~~~~~~~~~~g~-~~~~~~~g~~d~~i~iwd~~ 448 (546)
|. +. +++ .|+..|.|+||-..
T Consensus 474 P~---------~~~~~a---G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PM---------RDTLAA---GGNSSGKIYVFTNK 495 (498)
T ss_pred cc---------ccceec---cCCccceEEEEecC
Confidence 86 33 333 46677888888654
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.5e-18 Score=170.05 Aligned_cols=306 Identities=19% Similarity=0.281 Sum_probs=205.4
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc--CCCceEEEEEecC-CCCEEEEEeCCCeEEEE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFNPT-NDGTVYAASSDGTVSCT 242 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iw 242 (546)
+.+...+-..+.|+|-.+ .++++...-.|+|||.+.++....+..+ ....|+.+.+... +..++++|+.||.|+||
T Consensus 1060 ~~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HhcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 344455677888999884 6777776668999999988876665422 3456888888654 36689999999999999
Q ss_pred ECCCC-----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 243 DLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 243 d~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
+--.. +.+..+..-.....+..... .-+.|.....+|++++.-..|+|||.........+.. +....|+++
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaL 1214 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTAL 1214 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--CCCccceee
Confidence 64321 22222211111112222222 3456888888888888889999999987665443322 233467777
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCc--EEEEEEeCCCCE-EEEEeCCCcEEEEECCCCCCCCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRV--VNSAYFSPSGSK-ILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~--v~~~~~~p~~~~-l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
.-+-..++.|++|..||.|++||.|.......+... .|... |..+.+.++|-- |++|+.+|.|++||++.... ..
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~ 1293 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET 1293 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc
Confidence 766546899999999999999999876554333333 67766 999999986654 99999999999999987421 11
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhh------cCCCCCcccce
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV------MDPNITTISPV 467 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~------~~~~~~~i~~v 467 (546)
.-.+.....++... ..+..+++ ...+| +|+. +.|+||++. |+.+..+ .+...+.+.++
T Consensus 1294 ~~~iv~~~~yGs~l--Tal~VH~h---------apiiA---sGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSAL--TALTVHEH---------APIIA---SGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred cceeeeccccCccc--eeeeeccC---------CCeee---ecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee
Confidence 11111111111111 13334444 45555 6777 999999995 4444333 34455667777
Q ss_pred eeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 468 NKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 468 ~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+|||-.-+||+|+ |.+|.||....+.
T Consensus 1358 -~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 -AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -eecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999 9999999887654
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=4.6e-18 Score=164.02 Aligned_cols=274 Identities=15% Similarity=0.142 Sum_probs=187.3
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee--eeeecCCCCCCCCCcccceE
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~ 270 (546)
+.+.||++......... ..-...|++++|+|.++.+++.|..+|.|.+||++.+... ..+.. ..+.+..+++
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~-----~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA-----LEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc-----ccccCCcCeE
Confidence 47999999887433333 3467899999999998999999999999999999987663 22222 2334445688
Q ss_pred EEEecCCCC--EEEEEeCCCcEEEEeCCCCCCCcceEE----e-----ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 271 GMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAIL----I-----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 271 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~----~-----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
.+.|..+.. -+++++.||.|..|+++.-..+..... . ......+++++|.|.+.+.|++|+..|.|.-=
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 898976544 499999999999998876443221111 1 01234689999999889999999999998873
Q ss_pred ECCCCCCCc-----ee-eecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeE
Q 009022 340 DIRRLEAGS-----SL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRA 412 (546)
Q Consensus 340 d~~~~~~~~-----~~-~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 412 (546)
+........ .. ....|.++|+++.++|-+..++..+.|.+++||.-..... | ...+..... .+.+
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--P------l~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--P------LLSLDSSPDYVTDV 447 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC--c------chhhhhccceeeee
Confidence 332222211 11 2225889999999999555544444599999998752111 1 111112222 4579
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh--hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEc
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd 489 (546)
+|+|..+.. ++ ++..+|.|.|||+.... ++.+..-. ..+.....|+++|++|+.|. .|.+.+|+
T Consensus 448 aWSptrpav--------F~---~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 448 AWSPTRPAV--------FA---TVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCcCceE--------EE---EEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 999986422 22 56788999999996543 33333333 33334448999999999999 89999999
Q ss_pred CCCC
Q 009022 490 PKEK 493 (546)
Q Consensus 490 ~~~~ 493 (546)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9653
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-19 Score=161.59 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=163.6
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 253 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (546)
.|++..... .++++|+..+.|+|||++...+.. ...+|...|+++.++.. ..+|++++..|.|.|..+.++.....+
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr-~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRAKLIHR-FLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHHHHHhh-hccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccce
Confidence 344444444 799999999999999999544444 44899999999999988 999999999999999999998877777
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCCE-EEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
...... .+.-+.|++..+. |.+++.+|.|.+||+....+..... ..|..+...|+|+|.+..+|++.+.
T Consensus 160 ~~~sgq--------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 160 TIDSGQ--------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred ecCCCC--------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecc
Confidence 655432 4778999997765 4557899999999998876655433 3456689999999988899999999
Q ss_pred CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 333 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|..|.+||.+.......+ ....+...++|.++|.+|+.|+..|.|..||++..+
T Consensus 230 Dkki~~yD~~s~~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cceEEEeeccccccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999999999865554444 346678999999999999999999999999998654
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.8e-20 Score=184.20 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=174.3
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe-cccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
+.++..|.+.|..|.|++..+++||+|+.+|.|.|||+.+.+..... .......|.+++|+....+.|++++.+|.+.|
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 45677899999999999998789999999999999999987666655 23356789999999887888999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCC---cEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
||++..+.+..+..+... ..+..++|+|+. ..|++++.|. .|.+||+|......+.+.. |...|.++
T Consensus 189 WDlr~~~pii~ls~~~~~-------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~Gilsl 259 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGR-------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSL 259 (1049)
T ss_pred ccccCCCcccccccCCCc-------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeee
Confidence 999988777666544321 258899999975 4555555443 8999999987666555444 44479999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.|++.+..+|++++.|+.|.+|+..+++. +..+ ....++..+.|+| +...|+.++.||.|.||.+....
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~~tgEv---l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNPNTGEV---LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecCCCceE---eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99998889999999999999999987554 4334 3567899999999 66689999999999999997654
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=3.4e-18 Score=146.08 Aligned_cols=261 Identities=18% Similarity=0.191 Sum_probs=175.7
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeee----eecCCCCCCCCCcccceEEEEec-------CCCCEEEEEe
Q 009022 217 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL----MNVNPNGWHGPRTWRMLYGMDIN-------PEKGVVLVAD 285 (546)
Q Consensus 217 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~ 285 (546)
...+.|+|+ +..|++-+.|..+.+|++...-.... ................|...+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 356789999 99999999999999999863211111 00000000000111236666663 6788999999
Q ss_pred CCCcEEEEeCCCCCCCcceEEeecCC---CcEEEEEECCCCCCEEEEEeCCCeEEEEEC-CCCCCCceeeec-----CCC
Q 009022 286 NFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELLLSCGNDHFARIWDI-RRLEAGSSLCDL-----PHK 356 (546)
Q Consensus 286 ~dg~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~-----~~~ 356 (546)
.+.-|++||..+++..... ....|. ....+++|+| ++..|++|. ...|++||+ |.+..-....++ +..
T Consensus 131 r~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccch-hhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999998765433 222221 1356899999 999998875 789999999 433322222222 347
Q ss_pred CcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 357 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 357 ~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
+-|.+++|+| +...+++|+...++-||.-..+..+.. .+ .+...+..+.|.++ |..+. +
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l------lg--gh~gGvThL~~~ed---------Gn~lf---s 267 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL------LG--GHGGGVTHLQWCED---------GNKLF---S 267 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceee------ec--ccCCCeeeEEeccC---------cCeec---c
Confidence 8899999999 777999999999998888765543221 11 22223347899998 44433 3
Q ss_pred C-CcCcceEEEECCc-hhhhHhhcCCCCCccccee-eecCCCcEEEEec-CCcEEEEcCCC-CCccceeec
Q 009022 436 G-AALHPIDFIDITT-GQLVAEVMDPNITTISPVN-KLHPRDDVLASGS-SRSIFIWRPKE-KSELVEQKE 501 (546)
Q Consensus 436 g-~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~v~-~~s~~~~~l~sgs-dg~i~vwd~~~-~~~~~~~~~ 501 (546)
| ..+-.|..||++. +.++..+..|....-..|. ...|++++|++|+ ||.|++||+.. |..+..+..
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 4 4567899999974 5678888777543444442 5579999999998 99999999988 554444433
No 171
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=2.9e-18 Score=170.63 Aligned_cols=228 Identities=16% Similarity=0.228 Sum_probs=161.7
Q ss_pred cCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-------eeEEecccCCCceEEEEEecCCCC
Q 009022 156 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDG 228 (546)
Q Consensus 156 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 228 (546)
.-|.+..+..|..|...|..++.++....+++||+.||+|+||+..... ...++ .....++.++.+.+. ++
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~-~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN-GD 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC-CC
Confidence 3456778889999999999999988765799999999999999986522 12222 225678999999998 99
Q ss_pred EEEEEeCCCeEEEEECCCCce--eeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCcce
Q 009022 229 TVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEA 304 (546)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 304 (546)
.+|.++.||.|++.+++.... .......... .......+...+|.. ....++.++..+.|..||+++.......
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n--~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN--LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeeccc--ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 999999999999999986211 1111100000 011111233334433 2247888999999999999987665544
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC-C--CEEEEEe--CCCc
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-G--SKILTTS--QDNR 379 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-~--~~l~s~s--~dg~ 379 (546)
.....| +.|++++.+| .++++++|+..|.+.+||+|-....... ..++..+|+.+..+|- + ...++++ ..+.
T Consensus 1190 k~~~~h-G~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1190 KNQLRH-GLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSW-EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hcCccc-cceeEEEecC-CceEEEEecCCceEEEEEeecCceeecc-cCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 333333 4899999999 8889999999999999999864443332 2366788999998882 2 4554444 4688
Q ss_pred EEEEECCCCCC
Q 009022 380 LRIWDSIFGNL 390 (546)
Q Consensus 380 i~vwd~~~~~~ 390 (546)
|.+|++.+|..
T Consensus 1267 vs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1267 VSTWNMETGLR 1277 (1431)
T ss_pred eeeeecccCcc
Confidence 99999998854
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4e-19 Score=163.71 Aligned_cols=293 Identities=13% Similarity=0.154 Sum_probs=202.7
Q ss_pred eeccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.||+.. .+....+.+..+++++.+++.++|++...+.+ +++. ..+.|.||+|+|.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-------------------r~~~-~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-------------------RTVQ-FDSEIRSVAWNPL 452 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-------------------EEEe-ecceeEEEEecCC
Confidence 3456899944 44444456688889999999999986655543 3332 4558999999998
Q ss_pred CCcEEEEEcCCCcEEEEeCCCC------------------------------------ceeEEecccCCCceEEEEEecC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKV------------------------------------SEKIVYGNIHSCIVNNIRFNPT 225 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~ 225 (546)
++.-++..+....+.|-+..-+ +.-..+...|...|..|.|+..
T Consensus 453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 7544444444444444443110 0000111348889999999999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 009022 226 NDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 302 (546)
Q Consensus 226 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 302 (546)
|.||++...+ ..|.|+++.......-+..... .+.++.|+|...+|++++. ..|++||+.......
T Consensus 533 -GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG---------~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 533 -GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG---------LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVK 601 (733)
T ss_pred -CceEEEeccCCCcceEEEEecccccccCchhhcCC---------ceeEEEecCCCceEEEEec-cceEEEehhHHHHHH
Confidence 9999997664 5688998887665544433222 4899999999999999987 789999998865554
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
+++.. ...|..++++| .|..|+.|+.|+.+..||+.-... ..+.+ .|...|++|+||+.-.+|++|+.||++.
T Consensus 602 kL~tg---~kwiS~msihp-~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 602 KLLTG---SKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHhcC---CeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 43332 23799999999 999999999999999999964322 33333 5899999999999999999999999999
Q ss_pred EEECCC------CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE
Q 009022 382 IWDSIF------GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 445 (546)
Q Consensus 382 vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw 445 (546)
||--.- .-++.|.. .+..+........+.+.|+|. ..++. +++.||+|++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK-~L~gH~~~~~~gVLd~~wHP~---------qpWLf---sAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLK-RLRGHEKTNDLGVLDTIWHPR---------QPWLF---SAGADGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeee-eccCceeecccceEeecccCC---------CceEE---ecCCCceEEee
Confidence 985331 11111111 122223333444567789998 34444 78899999998
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=2.7e-18 Score=144.51 Aligned_cols=208 Identities=20% Similarity=0.257 Sum_probs=159.6
Q ss_pred ccCCCeEEEEEcCCC----CcEEEEEcCCCcEEEEeCCCCceeEE--------ecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 168 YHSRRVTCLEFHPTN----NHILLSGDKKGQVGVWDFYKVSEKIV--------YGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
.|.-+++.+.|.|+. +.+|||.+. .+|||.+........ ....+..++++..|+.-..++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999975 346777653 799999874221111 113467799999999877899999999
Q ss_pred CCeEEEEECCCCce---eeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC
Q 009022 236 DGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 311 (546)
Q Consensus 236 dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 311 (546)
|-+..|||++++.. ...+-.|.. .|+.++|...+ +.||+.+.||.|++||++.......+.......
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDK---------EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDK---------EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCc---------ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 99999999998733 222323322 59999999865 578889999999999999866544333333334
Q ss_pred CcEEEEEECCCCCCEEEEEeCC-CeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 009022 312 SKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.+...++|++++.+++|+-..| ..|.|.|+|.+.. .+..+ +|.+.|+.++|.| ....|++++.|..+.+||+...
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 5889999999999999886654 5799999986443 44444 8999999999999 7789999999999999999753
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.3e-18 Score=148.96 Aligned_cols=222 Identities=15% Similarity=0.211 Sum_probs=160.1
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec--ccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
.+...+.+|..+|+.|.|+|..+++|++|+.|..||+|++++..++..+. .+|...|.++.|+++ +.+|++++.|.+
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhs 204 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHS 204 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC-CCeeeccCCcce
Confidence 34467889999999999999998999999999999999999999888874 579999999999999 999999999999
Q ss_pred EEEEECCCCceeeeeecC----CC----CCCCC-----------CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC-C
Q 009022 239 VSCTDLETGLALSLMNVN----PN----GWHGP-----------RTWRMLYGMDINPEKGVVLVADNFGFLYLVDART-N 298 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~----~~----~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~ 298 (546)
|++|++...+....++.. +. ++... .+...|-|+.|- |.++++-+-++.|..|.... .
T Consensus 205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~ 282 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLE 282 (385)
T ss_pred EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhh
Confidence 999999855433222211 11 01111 111123333332 57888888889999998722 1
Q ss_pred CCCcce----------EEeecCCCcE--EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec--CCCCcEEEEEE
Q 009022 299 SRSGEA----------ILIHRKGSKV--VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYF 364 (546)
Q Consensus 299 ~~~~~~----------~~~~~~~~~i--~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~ 364 (546)
+..... ..+.-....| ..++|.| -...||.|...|.|++||++...+...-... .....|...+|
T Consensus 283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 111100 0111111223 3456667 6789999999999999999876654222211 34567899999
Q ss_pred eCCCCEEEEEeCCCcEEEEECC
Q 009022 365 SPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 365 ~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
+.++.+|+..+.|++|.-||..
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999853
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=4.2e-17 Score=154.43 Aligned_cols=280 Identities=11% Similarity=0.126 Sum_probs=171.7
Q ss_pred EEEEEcCCCcEEEEeCCCC-c--eeEEecccCCCceEEEEEecCCCCEEEEEe-CCCeEEEEECC-CCceeeeeecCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKV-S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLE-TGLALSLMNVNPNG 259 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~ 259 (546)
++++...++.|++|++.+. . ....+ .+.+....++++|+ +++|++++ .++.|.+|++. ++.....-.....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-
Confidence 4455577899999999643 2 22222 24456788999999 88776654 57889999997 3332211111111
Q ss_pred CCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE-EeCCCeEE
Q 009022 260 WHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS-CGNDHFAR 337 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~i~ 337 (546)
.....++|+|++++|++++ .++.|.+|++.+................+.+++++| +++++++ ...++.|.
T Consensus 80 -------~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 80 -------GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIR 151 (330)
T ss_pred -------CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence 1256799999999888876 478999999975332222222112223467788999 8877755 44679999
Q ss_pred EEECCCCCCCc----eeeecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCC--CCCCCCCccee-eccCCcccCCc
Q 009022 338 IWDIRRLEAGS----SLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHLTP 409 (546)
Q Consensus 338 iwd~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~~~ 409 (546)
+||+.+..... .............+.|+|++++|+++.. ++.|.+|++.. +.+ .....+. ..........+
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccc
Confidence 99997532211 0011122334678999999999988876 89999999973 222 0000000 00111111122
Q ss_pred eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh----hhHhhcCCCCCcccceeeecCCCcEEEEec--CC
Q 009022 410 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----LVAEVMDPNITTISPVNKLHPRDDVLASGS--SR 483 (546)
Q Consensus 410 ~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--dg 483 (546)
..+.++|+ |+++.. +...++.|.+|++.... .+..+... .....+ +|+|+|++|+++. ++
T Consensus 231 ~~i~~~pd---------g~~lyv--~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~-~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 231 ADIHITPD---------GRHLYA--CDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGF-NIDHSGKYLIAAGQKSH 296 (330)
T ss_pred eeEEECCC---------CCEEEE--ecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCce-EECCCCCEEEEEEccCC
Confidence 34677887 665552 23456889999985432 22222111 122345 7999999999866 79
Q ss_pred cEEEEcCC
Q 009022 484 SIFIWRPK 491 (546)
Q Consensus 484 ~i~vwd~~ 491 (546)
+|.+|++.
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999874
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=172.94 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=213.6
Q ss_pred CceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 159 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 159 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
....++.|.||..+|+|+.|...| +++++|+.|..++||...+..+.... .+|.+.|+.++.+.+ +.++++++.|..
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~-n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN-NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh-hhhhhhcccCce
Confidence 345667899999999999999999 89999999999999999999988888 899999999999988 889999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc--ceEEeecCCCcEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG--EAILIHRKGSKVVG 316 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~i~~ 316 (546)
|++|.+..+.++..+..+.. .|++|+|+|-. +.+.||++++||.+-..... ...... ...-+.+
T Consensus 256 IrvWrl~~~~pvsvLrghtg---------avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s 321 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTG---------AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDS 321 (1113)
T ss_pred EEEEecCCCchHHHHhcccc---------ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceee
Confidence 99999999999998877765 59999999955 77899999999998211111 111111 1235666
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
+.|.. ++.-+++|+.++.-..|.+.... .+...+.-+.++. ...+.+++-.+-.+++|++.+|.+..
T Consensus 322 ~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H--- 389 (1113)
T KOG0644|consen 322 ILFEN-NGDRFLTGSRDGEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH--- 389 (1113)
T ss_pred eeccc-cccccccccCCcccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---
Confidence 77766 78889999999999988764211 1222222222222 22566777778889999999887632
Q ss_pred ceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC
Q 009022 396 EIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 396 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
...++.. .+.+.++|-++..+ .+.+.||.+.|||+-.|.+++.+..++ ..+... .||++|
T Consensus 390 ------~l~ghsd~~yvLd~Hpfn~ri~-----------msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~-kFSqdg 450 (1113)
T KOG0644|consen 390 ------NLMGHSDEVYVLDVHPFNPRIA-----------MSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDG-KFSQDG 450 (1113)
T ss_pred ------hhcccccceeeeeecCCCcHhh-----------hhccCCCceEeeecccCCcceeeeccc-ceeecc-ccCCCC
Confidence 2222222 13456666633222 267889999999999998888776555 444444 799999
Q ss_pred cEEEEec-CCcEEEEcCCCCC
Q 009022 475 DVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 475 ~~l~sgs-dg~i~vwd~~~~~ 494 (546)
..++... -|.+.|.....++
T Consensus 451 ts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceEecCCCCCceEEeccCCCc
Confidence 9998887 4999988765543
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6.9e-19 Score=161.34 Aligned_cols=261 Identities=18% Similarity=0.327 Sum_probs=173.6
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC--------CceeEEecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
++..|.+.|+.++|+|.. ..|++|+.||+|++|+++. .+.+..+ .+|.++|.|++..++ +..+++|+.|
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n-~~~~ysgg~D 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN-GEHCYSGGID 365 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC-ceEEEeeccC
Confidence 677899999999999998 4799999999999999932 1234444 789999999999998 9999999999
Q ss_pred CeEEEEECCCCc------eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 237 GTVSCTDLETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 237 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
|+|+.|++.... -...+... +.+ +...++.+++++....|++++.||++++|........ .. .....
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~---l~G--htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-~f-~~~~e 438 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGT---LLG--HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-TF-GEPKE 438 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccc---eec--cccceeeeeecccccceeeecCCceEEeeccCCcCcc-cc-CCccc
Confidence 999999775211 01111111 111 2236899999999999999999999999998775541 11 11111
Q ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC--------CCCcEEEEEEeCCCCEEEEEeCCCcEEE
Q 009022 311 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--------HKRVVNSAYFSPSGSKILTTSQDNRLRI 382 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~~p~~~~l~s~s~dg~i~v 382 (546)
.+...++.+-.....+.++. ..+..+.+.+......+..++ ....+..+.++|...+.+++..|+.|++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred cCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 22344555543122333333 333344443333333333221 1234556666666666666666666666
Q ss_pred EECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCC
Q 009022 383 WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT 462 (546)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 462 (546)
+|..++. ++.....|. .
T Consensus 516 ~dn~~~~--------------------------------------------------------------~l~s~~a~~-~ 532 (577)
T KOG0642|consen 516 FDNKTGK--------------------------------------------------------------ILHSMVAHK-D 532 (577)
T ss_pred ccccccc--------------------------------------------------------------cchheeecc-c
Confidence 6655443 333333333 6
Q ss_pred cccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeecc
Q 009022 463 TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 463 ~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
.++++ ++.|+|.+|++|+ ||.+++|.+.....+.....|
T Consensus 533 svtsl-ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 533 SVTSL-AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eecce-eecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 77777 9999999999999 999999999876665554444
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=2.4e-18 Score=150.89 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=161.7
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|+++|..++|+|.+...||+|+.|.+|.||.+..+.....+.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------------ 121 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------------ 121 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------------
Confidence 68999999999999988999999999999999987654433221
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
.....+.+|...|--++|+|...+.|++++.|.+|.+|++.++.. +..+.|...|.+++|+.+|.+
T Consensus 122 -----------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 122 -----------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLDHPDMVYSMSFNRDGSL 187 (472)
T ss_pred -----------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eeecCCCCeEEEEEeccCCce
Confidence 011133445558999999998889999999999999999987554 334569999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
|++.+.|..|+|||.++++++... ..+ ....+.++.|--+ |.++..+++..++..+-+||....
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~----~~h---eG~k~~Raifl~~---------g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEG----VAH---EGAKPARAIFLAS---------GKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeec----ccc---cCCCcceeEEecc---------CceeeeccccccccceeccCcccc
Confidence 999999999999999998874421 011 1122235555554 666666778889999999998765
Q ss_pred hhhHhhc--CCCCCcccceeeecCCCcEEEEec--CCcEEEEcCCCCC
Q 009022 451 QLVAEVM--DPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKS 494 (546)
Q Consensus 451 ~~~~~~~--~~~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd~~~~~ 494 (546)
+.-..+. ....+.+.. .|.++..+|+.++ |+.|+-|.+....
T Consensus 252 ~eP~~~~elDtSnGvl~P--FyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDTSNGVLLP--FYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEeccCCceEEe--eecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4332222 112133333 5899999888776 9999999987755
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.6e-17 Score=160.32 Aligned_cols=261 Identities=21% Similarity=0.305 Sum_probs=179.7
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee-----EEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 242 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 242 (546)
-...|+|+.|+|..+.+||.|..+|+|.+||+...... ......|..+++.+.|..+. +.-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45689999999998899999999999999999876542 22235689999999998761 2449999999999999
Q ss_pred ECCCCceee-eeecCCCC--CCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCc----ceE-EeecCCCc
Q 009022 243 DLETGLALS-LMNVNPNG--WHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSG----EAI-LIHRKGSK 313 (546)
Q Consensus 243 d~~~~~~~~-~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~-~~~~~~~~ 313 (546)
+++.-.... ........ .........++++.|.+ +...+++|+..|.|+.-.-....... +.. ....|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876433211 11111110 00112223588899987 56789999999999874433322211 111 23345679
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
|+++.++|....+|++++ |.+++||....... ..+....+...|++++||| ....|+++..+|.|.+||+.......
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCC-cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999997777777777 99999999752111 1222235666799999999 56788889999999999997654422
Q ss_pred CCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 393 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
....... ......+.|++. |++++ .|...|.+.+|++..
T Consensus 479 v~s~~~~------~~~l~~~~~s~~---------g~~la---vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVC------SPALTRVRWSPN---------GKLLA---VGDANGTTHILKLSE 517 (555)
T ss_pred ccccccc------ccccceeecCCC---------CcEEE---EecCCCcEEEEEcCc
Confidence 2111111 111135667776 88888 899999999999853
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.1e-17 Score=135.64 Aligned_cols=207 Identities=16% Similarity=0.200 Sum_probs=150.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---------CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.|.+-+++|.+ ++|++|..+|+|.+..+.+ ++......++|.++|..++|+ ..+|++|+. |.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEe
Confidence 46677899999 8999999999999999854 233333347899999999998 447888775 999999
Q ss_pred ECCCCce----eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 243 DLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 243 d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
..+.... ....+..............|++|.+.|..+.++.++.|+.++-||+.+++... ...+|...|.++.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVV 163 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeee
Confidence 8764322 11111111111112222358999999988888888899999999999987544 4567777899998
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC--------CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH--------KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
--. ....+++|+.||++++||+++.+..+.+....+ ..+|.+++- +..+|++|+ ...+.+|.++..+.
T Consensus 164 ~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 164 GRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 855 556799999999999999998877665554422 335666655 667777765 56799999987664
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.3e-16 Score=134.54 Aligned_cols=292 Identities=13% Similarity=0.118 Sum_probs=196.9
Q ss_pred CeEEEEEc--CCCCcEEEEEcC----CCcEEEEeCC--CCceeEEecccCCCceEEEEEecCC----CCEEEEEeCCCeE
Q 009022 172 RVTCLEFH--PTNNHILLSGDK----KGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTN----DGTVYAASSDGTV 239 (546)
Q Consensus 172 ~V~~l~~~--~~~~~~l~s~~~----d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i 239 (546)
.+.++.|+ |+...+||.|+. .+.|.|-.+. +++........|..+++.+.|.|+. ..+|++++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 67888898 344357888874 4567776654 3343333334699999999999983 24566554 479
Q ss_pred EEEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 240 SCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 240 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
++|.+.... ......+... .......+++++.|+. +.++|.+++-|-+..+||+.++.......++-.|...|..
T Consensus 124 RlWri~~ee~~~~~~~~L~~~--kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNN--KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred EEEeccCcCCceehhhhhccC--cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 999987432 2111111111 1112223689999987 7789999999999999999987432222244456669999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC-CCcEEEEEEeC-CCCEEEEEeCC-CcEEEEECCCCCCCCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH-KRVVNSAYFSP-SGSKILTTSQD-NRLRIWDSIFGNLDSP 393 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~p-~~~~l~s~s~d-g~i~vwd~~~~~~~~~ 393 (546)
|+|.....+.||+.+.||.||+||+|.......+..-+. ..+...++|++ +-+++|+-..| ..|.|.|++....
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--- 278 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--- 278 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---
Confidence 999985567999999999999999998877666655543 67889999998 77888887665 5699999975321
Q ss_pred CcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh------hHhhcCCCCCcccc
Q 009022 394 SREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL------VAEVMDPNITTISP 466 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~ 466 (546)
.+. .+.+|.. .-.++|.|.. ...++ +++.|..+.|||+.+.-. +..+. ....|..
T Consensus 279 --pva---~L~~H~a~VNgIaWaPhS--------~~hic---taGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNq 340 (364)
T KOG0290|consen 279 --PVA---RLRNHQASVNGIAWAPHS--------SSHIC---TAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQ 340 (364)
T ss_pred --cee---hhhcCcccccceEecCCC--------Cceee---ecCCcceEEEEecccccccCCCCchhhhh--ccceeee
Confidence 111 2222222 2468999986 34444 788999999999975322 22222 2356666
Q ss_pred eeeecC-CCcEEEEecCCcEEEEc
Q 009022 467 VNKLHP-RDDVLASGSSRSIFIWR 489 (546)
Q Consensus 467 v~~~s~-~~~~l~sgsdg~i~vwd 489 (546)
+ .|++ .+..++.+.+..+.|..
T Consensus 341 i-~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 341 I-QWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred e-eecccCCCEEEEEecCeeeEEe
Confidence 6 8885 45678877766665543
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2.2e-17 Score=139.04 Aligned_cols=213 Identities=19% Similarity=0.240 Sum_probs=157.1
Q ss_pred eeeeecc-ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce-eEEe----cccCCCceEEEEEecCC-CCEEEEE
Q 009022 161 VNCAVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVY----GNIHSCIVNNIRFNPTN-DGTVYAA 233 (546)
Q Consensus 161 ~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~----~~~~~~~v~~~~~~~~~-~~~l~s~ 233 (546)
.++..|. .|-+.|.|+.|.|++.+ |++-. |..|.+|++..... ...+ ...|....++-+|+|.. ++.+++.
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 3444444 56679999999999854 65554 78999999987655 2222 13456678889999943 5555554
Q ss_pred eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC
Q 009022 234 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 312 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 312 (546)
.|+++..||+++......+.-.- ...+..+.|+|+.+ +|++++.||.|++||.+..+.+...+..|.|
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH-- 259 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH-- 259 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhh--------cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--
Confidence 47899999999887766554221 12589999999865 5777899999999999987766554444444
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC---------------------Cc-----eeeec-CCCCcEEEEEEe
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA---------------------GS-----SLCDL-PHKRVVNSAYFS 365 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~---------------------~~-----~~~~~-~~~~~v~~~~~~ 365 (546)
.|.++.|+|...++|++|+.|..|.+|....-.. .+ .+..+ .|...|++++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 9999999998888999999999999997643210 01 11122 588999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECC
Q 009022 366 P-SGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 366 p-~~~~l~s~s~dg~i~vwd~~ 386 (546)
. +.-+||+-+.||.+.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 8 66778999999999886653
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.3e-16 Score=137.59 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCC--CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 172 RVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
.|.-+-|+.. ++|..+.+ +.+++.++.....+..+. ...+|.+|.++.+ .|+++-.+ .|+|||+.+.+.
T Consensus 48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEeccccee
Confidence 4666667754 45544443 459999998877777764 6778999999853 66666554 499999999999
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE--eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
+.++...+.. ...+.++++++.+.+++.- ...|.|.+||..+-+... .++.|.+++.+++|+| +|.+|
T Consensus 119 LhTI~t~~~n------~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~-~G~ll 188 (391)
T KOG2110|consen 119 LHTIETTPPN------PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSP-DGTLL 188 (391)
T ss_pred ehhhhccCCC------ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECC-CCCEE
Confidence 9887654221 1247777777778888874 456999999998865543 4567788999999999 99999
Q ss_pred EEEeCCCe-EEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 328 LSCGNDHF-ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 328 ~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|+++..|+ ||||.+.+++....++.--....|.+++|+|++.+|++.|..++|++|.+....
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999986 789999766554444332345679999999999999999999999999997654
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.3e-18 Score=156.18 Aligned_cols=262 Identities=17% Similarity=0.159 Sum_probs=180.4
Q ss_pred ccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 105 KMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
++..|.. .....+.+....++.++.+++.++|.+.. . ..........+.+|.+|.++|.|+++.+++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk--~---------~~s~~~~~epi~tfraH~gPVl~v~v~~n~- 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK--A---------KKSAEKDVEPILTFRAHEGPVLCVVVPSNG- 356 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc--c---------CCccccceeeeEEEecccCceEEEEecCCc-
Confidence 5567774 34444555667889999999999998632 1 111112234567899999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCC---------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 184 HILLSGDKKGQVGVWDFYKV---------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
..+++|+.||+|+.|++... ..+.....||...|+.+++++. ...|++++.||++++|+...... .++.
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~ 434 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFG 434 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccC
Confidence 78999999999999976522 1223333789999999999999 88999999999999999876665 2332
Q ss_pred cCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceE----EeecCCCcEEEEEECCCCCCEEEE
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI----LIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
..... ....++.+.... ...++....+.-.++++.......... ........+..+.++| +..+.++
T Consensus 435 ~~~e~-------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~ 506 (577)
T KOG0642|consen 435 EPKEH-------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFT 506 (577)
T ss_pred Ccccc-------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEe
Confidence 22111 123444443322 233333333333344433322211110 0011113577888999 8899999
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+..++.|+++|..++.... ....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 507 ~hed~~Ir~~dn~~~~~l~--s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILH--SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cccCCceecccccccccch--heeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999998766532 2236899999999999999999999999999999865443
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.9e-18 Score=154.55 Aligned_cols=223 Identities=19% Similarity=0.297 Sum_probs=163.1
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 242 (546)
+.|.||++.|+||.|+.+| .+|++|+.|-.+.|||.-..+.+..+..+|...|.+++|-|.. +.++++|+.|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 5689999999999999999 6999999999999999998888888889999999999999963 5678899999999999
Q ss_pred ECCCCceeeee---ecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcce-------EEeecCC
Q 009022 243 DLETGLALSLM---NVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA-------ILIHRKG 311 (546)
Q Consensus 243 d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~ 311 (546)
|+...+.-..- ......+ ..+...|..|+..|++ ..+.+++.||.|+-+|++........ ......-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~--~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCW--SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred ecccccccccccCccchhhhh--hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99853211100 0000000 1112247778888887 88999999999999999974322111 1112222
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC---------------ceeeec--CCC-----------CcEEEEE
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG---------------SSLCDL--PHK-----------RVVNSAY 363 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~--~~~-----------~~v~~~~ 363 (546)
-...++.++|.+..+|++|+.+-..++||.+..... .++..+ +|. ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 357899999989999999999999999995421110 011111 121 1256788
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 364 FSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 364 ~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|+|+|..|++.=..-.|+++|+..++
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 99999888877666789999997655
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.3e-15 Score=150.87 Aligned_cols=293 Identities=27% Similarity=0.424 Sum_probs=212.9
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCC-EEEEEeCCCe
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGT 238 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~ 238 (546)
.....+..|...|.+++|+|++ .++++++. ++.+++|++........+ .+|...|.+++|+|+ +. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPD-GGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCC-cceEEEEecCCCc
Confidence 3456788999999999999999 57888875 999999999986666666 569999999999988 65 5555589999
Q ss_pred EEEEECCCCceee-eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 239 VSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 239 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
|++||...+.... .+..+.. .. ...|++++.++++++.++.+++|+++....... ....+...+.++
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 290 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSD---------SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSV 290 (466)
T ss_pred EEEEECCCCcEEeeecCCCCc---------ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE--EEecCCccEEEE
Confidence 9999988777666 3433322 12 227999999999999999999999997665111 124456689999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCCCCCCCcc
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
.|.| ++..+++++.|+.+.+|+..............|...+..+.|.+++..++.+ ..|+.+.+|++......
T Consensus 291 ~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----- 364 (466)
T COG2319 291 AFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL----- 364 (466)
T ss_pred EECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee-----
Confidence 9999 8888888888999999988765543333223577789999993343455555 67899999999765510
Q ss_pred eeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcE
Q 009022 397 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 476 (546)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~ 476 (546)
..... ......+.+.+ . ..... .+..++.+.+|+.........+..+. ..+... .+++++.+
T Consensus 365 -~~~~~---~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 426 (466)
T COG2319 365 -KTLEG---HSNVLSVSFSP-D-GRVVS----------SGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSL-DFSPDGKS 426 (466)
T ss_pred -EEecC---CceEEEEEECC-C-CCEEE----------EecCCCceEEEecccCeeeeeccCCC-CcEEEE-EECCCCcE
Confidence 00000 00023445555 3 22221 25678899999999888776665543 344444 78999999
Q ss_pred EEEec-CCcEEEEcCCC
Q 009022 477 LASGS-SRSIFIWRPKE 492 (546)
Q Consensus 477 l~sgs-dg~i~vwd~~~ 492 (546)
+++++ ++.+++|+...
T Consensus 427 ~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 427 LASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecCCCcEEEEeccC
Confidence 99977 99999999988
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=153.22 Aligned_cols=300 Identities=17% Similarity=0.176 Sum_probs=199.2
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC---CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..|+..++|.++||.+ +++|+|..||.|.||.--. .........=|...|.+++|+++ |.+|++|+..|.+.+|.
T Consensus 202 ~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC-CceEeecccceEEEEEe
Confidence 3477789999999999 7999999999999996432 12222233458889999999999 99999999999999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEee--------cCCCcEE
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH--------RKGSKVV 315 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~i~ 315 (546)
+.+++.....++ ..+|..+.++|++.+.+....|..|.+....+......+.... ...+-.+
T Consensus 280 ~~T~~kqfLPRL----------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 280 LETGKKQFLPRL----------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred ecCCCccccccc----------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 999883322222 2369999999999999999999999999876543322211111 1123467
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC---------CCCcEEEEEEeCCCCEEEEEeC--------C-
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---------HKRVVNSAYFSPSGSKILTTSQ--------D- 377 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~l~s~s~--------d- 377 (546)
.++++| ..+.++..+..|.|.+||+-+......+.... +.-.++.++.+-.|++++|.-. |
T Consensus 350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 788999 77888888899999999998765544443321 2234677777778999998742 2
Q ss_pred -CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh-
Q 009022 378 -NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE- 455 (546)
Q Consensus 378 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~- 455 (546)
-.+++|-......... +.......+.......++.+...+. .++ +.+.+|.++||-....+.+..
T Consensus 429 e~~LKFW~~n~~~kt~~---L~T~I~~PH~~~~vat~~~~~~rs~-------~~v---ta~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFI---LNTKINNPHGNAFVATIFLNPTRSV-------RCV---TASVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred eEEEEEEEEcCCcceeE---EEEEEecCCCceeEEEEEecCcccc-------eeE---EeccCCeEEEEEEecccccCcC
Confidence 2477786543221110 0011111111111222222221111 122 567889999998843222111
Q ss_pred --------hcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCC
Q 009022 456 --------VMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 493 (546)
Q Consensus 456 --------~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~ 493 (546)
+..-+...+..+ +|+.||.+|+.+-+++|.+||..+.
T Consensus 496 ~s~W~c~~i~sy~k~~i~a~-~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPITAL-CFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccceEEeeeeccccCcccch-hhcCCCcEEEEecCCEEEEecCCCh
Confidence 111123555555 8999998888888999999999883
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.4e-18 Score=150.43 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=154.4
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 253 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (546)
.+++|+++| ..|++|+.||++|||++......... ..|...|.++.|+|+ +.+|++.+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999 68999999999999998887766665 578999999999999 9999999999 8999999999766655
Q ss_pred ecCCCCCCCCCcccceEEEEecCCC-----CEEEEEeCCCcEEEEeCCCCCCC--cceEEeecCCCcEEEEEECCCCCCE
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEK-----GVVLVADNFGFLYLVDARTNSRS--GEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
...... .....+.|+.++ ..++.....+.|..|++...... .+..........|.+++.++ ++++
T Consensus 224 t~~~k~-------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf 295 (398)
T KOG0771|consen 224 TPFSKD-------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKF 295 (398)
T ss_pred CCcccc-------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcE
Confidence 422111 136667788776 33334455677888777554331 01101111122699999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++.|+.+|.|.|++..+.+..+.+. ..|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999997655433332 26999999999999999999999999999987753
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=2.5e-16 Score=137.37 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=171.6
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCc
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGL 248 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 248 (546)
..+..+.|+.+. .+|..|+.|| .++|........... ......|.-+-|+. .+++..+.+. .++++++..+.
T Consensus 6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence 457777899888 6788888887 788887765442222 22333456666774 4777666543 49999999888
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
.+..+..+. .|.++.++. +.|++.-.+ .|+|||+++++.+..+.....+...+.++.+++ .+.+++
T Consensus 80 ~ICe~~fpt----------~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylA 145 (391)
T KOG2110|consen 80 TICEIFFPT----------SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLA 145 (391)
T ss_pred eEEEEecCC----------ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEE
Confidence 887776654 377777754 456665554 499999999998877766655555677777777 666777
Q ss_pred EEe--CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCCCCCCCcceeeccCCcc
Q 009022 329 SCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-LRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 329 ~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
.-+ ..|.|.|||+.+.++...+. .|.+.+.+++|+++|.+|||+|..|+ ||||.+.+|+.
T Consensus 146 yp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k--------------- 208 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK--------------- 208 (391)
T ss_pred ecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE---------------
Confidence 543 46899999998766654443 69999999999999999999999886 56776655432
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC-CCCCcccceeeecCCCcEEEEec-CC
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-PNITTISPVNKLHPRDDVLASGS-SR 483 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~v~~~s~~~~~l~sgs-dg 483 (546)
+..|+. -....|+++ +|+|++++|++.| .+
T Consensus 209 -----------------------------------------------l~eFRRG~~~~~IySL-~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 209 -----------------------------------------------LYEFRRGTYPVSIYSL-SFSPDSQFLAASSNTE 240 (391)
T ss_pred -----------------------------------------------eeeeeCCceeeEEEEE-EECCCCCeEEEecCCC
Confidence 222221 112456677 8999999999988 89
Q ss_pred cEEEEcCCCCC
Q 009022 484 SIFIWRPKEKS 494 (546)
Q Consensus 484 ~i~vwd~~~~~ 494 (546)
+|.||.+..-.
T Consensus 241 TVHiFKL~~~~ 251 (391)
T KOG2110|consen 241 TVHIFKLEKVS 251 (391)
T ss_pred eEEEEEecccc
Confidence 99999987543
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=4.3e-17 Score=143.68 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=170.0
Q ss_pred CCccccccccccccC-CccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEE
Q 009022 108 GHTTMSCPHRVATEY-GVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHIL 186 (546)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 186 (546)
.|+.+....+..... .+.+++.+..+++|.........+. +.-.....|..|..+|+++.|+|+| .+|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g-elL 80 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG-ELL 80 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc-Cee
Confidence 344443333333333 7888899999999976554443321 2233456789999999999999999 699
Q ss_pred EEEcCCCcEEEEeCC--------C-----C--ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 187 LSGDKKGQVGVWDFY--------K-----V--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 187 ~s~~~d~~i~iwd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
|+|+.+|.|.+|... + . -.......+|...|..++|+|+ +.++++++.|+.+++||+..|+...
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEe
Confidence 999999999999876 2 1 1223334789999999999999 9999999999999999999998887
Q ss_pred eeecCCCCCCCC--------------------------------------------------------CcccceEEEEec
Q 009022 252 LMNVNPNGWHGP--------------------------------------------------------RTWRMLYGMDIN 275 (546)
Q Consensus 252 ~~~~~~~~~~~~--------------------------------------------------------~~~~~v~~~~~~ 275 (546)
.+..+.....+. ........++|+
T Consensus 160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 765543321000 000011223455
Q ss_pred CCCCEEEEEeC----CC-----cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC-----------------CCCEEEE
Q 009022 276 PEKGVVLVADN----FG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-----------------QPELLLS 329 (546)
Q Consensus 276 ~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~-----------------~~~~l~~ 329 (546)
|+|.++++... .+ ..++|+-...+.+ .........+...+.++|- -...+|.
T Consensus 240 PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP--~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 240 PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP--AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CCCcEEEcccceeeeCCceeeceeEeeccccccCc--eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 55555555321 11 1223322211111 1111111123333333331 1223444
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++ ...|+|||..+..+...+.. -|...|+.++|+++|..|+..|.||.+.+--+...++
T Consensus 318 At-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 318 AT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 44 56799999876554333333 3888999999999999999999999999888776665
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.2e-16 Score=156.89 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=192.3
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC-CCcEEEEEcCCCcEEEEe
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-NNHILLSGDKKGQVGVWD 199 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~~~d~~i~iwd 199 (546)
...++++.....+.+|++...+.+.+..... .-...|+.|.+-.. ...+|++|+.||.||||+
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCC----------------CCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3445555556777888888777766665422 12347888888653 336899999999999997
Q ss_pred CCCC-----ceeEEec------ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccc
Q 009022 200 FYKV-----SEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 200 ~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (546)
-... +.+.... .+..+.=.-+.|... ..+|++++.-..|+|||.........+...... .
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t--------~ 1210 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST--------L 1210 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecCCeeEEEEEecccceeEeecccCCCc--------c
Confidence 4322 1111111 111111244678777 556666666789999999988777666544322 3
Q ss_pred eEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc--EEEEEECCCCCC-EEEEEeCCCeEEEEECCCC
Q 009022 269 LYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK--VVGLHCNPIQPE-LLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 269 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~ 344 (546)
++++.-+. .|+.|++|..||.|++||.+....-..+.....|... |..+.+.+ .|. .|++|+.+|.|++||+|..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccC
Confidence 66665543 4799999999999999999986654444445555544 99999988 444 5999999999999999974
Q ss_pred CCCceeeecCC---CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 345 EAGSSLCDLPH---KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 345 ~~~~~~~~~~~---~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
.....+....| .+.++++..|+....+|+|+. +.|+||++...++ ...+.- ...-..+.....+++|+|.
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n-~~F~~q~~gs~scL~FHP~---- 1362 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYN-PGFMGQRIGSVSCLAFHPH---- 1362 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccC-cccccCcCCCcceeeecch----
Confidence 22222222222 235999999999999999998 9999999975443 211100 0111112223368899997
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
--+++ .|+.|..|.||....+
T Consensus 1363 -----~~llA---aG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 -----RLLLA---AGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -----hHhhh---hccCCceEEEeecCCc
Confidence 33444 7899999999987654
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.4e-16 Score=149.59 Aligned_cols=315 Identities=13% Similarity=0.172 Sum_probs=210.8
Q ss_pred ccCCCceeeeeccccCCCeEEEEEcCCCC--cEEEEEcCCCcEEEEeCCCCceeEEe-----------------------
Q 009022 155 HVIPDQVNCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVSEKIVY----------------------- 209 (546)
Q Consensus 155 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------- 209 (546)
+...+..|++.|.+|..+++.+.+.|... .++.+++.+|.|++||...+..+..+
T Consensus 42 yS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~ 121 (792)
T KOG1963|consen 42 YSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVY 121 (792)
T ss_pred EecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeE
Confidence 44455677888999999999999999765 47789999999999998322111000
Q ss_pred -------------------------------------------------------------------------------c
Q 009022 210 -------------------------------------------------------------------------------G 210 (546)
Q Consensus 210 -------------------------------------------------------------------------------~ 210 (546)
.
T Consensus 122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence 0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC--Cc--eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET--GL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 286 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 286 (546)
..|.-.+++.+++|. +++++++..||.|.+|.--. +. ....+..|. ..|.+++|+++|.+|++|+.
T Consensus 202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---------~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---------DEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecc---------cccceeEEecCCceEeeccc
Confidence 115566899999999 99999999999999996432 11 112222222 25999999999999999999
Q ss_pred CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec---------CCCC
Q 009022 287 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---------PHKR 357 (546)
Q Consensus 287 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~ 357 (546)
.+.+.+|.+.++++. .+..-+++|..+.++| ++.+.+....|+.|.+....+......+..+ ...+
T Consensus 272 E~VLv~Wq~~T~~kq----fLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 272 EGVLVLWQLETGKKQ----FLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred ceEEEEEeecCCCcc----cccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 999999999998732 2334455899999999 9998888889999999988655443333322 1355
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC---cccCCceeEEecCCCCCCceeEEeeeeeec-
Q 009022 358 VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF---NRHLTPFRAEWDPKDPSESLAVIGRYISEN- 433 (546)
Q Consensus 358 ~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~- 433 (546)
-.+.++++|..+.++-.+..|.|.+||+.+...+....-......- .......+++.+-. |.+++..
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~---------gs~maT~E 417 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF---------GSWMATLE 417 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc---------ceEEEEee
Confidence 6788999997788888899999999999887665432221111111 11111122222222 3333211
Q ss_pred ----CCCCc--CcceEEEECCc----hhhhHhhcCCCCCcccceeeecCCCc-EEEEec-CCcEEEEcCCCC
Q 009022 434 ----YNGAA--LHPIDFIDITT----GQLVAEVMDPNITTISPVNKLHPRDD-VLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 434 ----~~g~~--d~~i~iwd~~~----~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~sgs-dg~i~vwd~~~~ 493 (546)
-.... ...+++|-... ..+...+..+|...+...+..+|... .+++++ ||.++||-+..-
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 01222 34577886543 33444444555455555434455444 788888 999999998443
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=3.9e-17 Score=152.64 Aligned_cols=244 Identities=12% Similarity=0.135 Sum_probs=177.9
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
..+|++|++.|+|++|+.+| ..+|+|+.|..|.||+..-.. .+...|...|.|+.|+|- ...|++++.. ..-+|
T Consensus 46 lqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG---~LkYSH~D~IQCMsFNP~-~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG---ILKYSHNDAIQCMSFNPI-THQLASCSLS-DFGLW 119 (1081)
T ss_pred ccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccc---eeeeccCCeeeEeecCch-HHHhhhcchh-hcccc
Confidence 36799999999999999999 789999999999999865433 222459999999999999 8899999874 57789
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
......... +.....+.+++|..||.+++.|-.+|+|.+-+-.. .....+....+...+|.+++|+|.
T Consensus 120 S~~qK~V~K-----------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 120 SPEQKSVSK-----------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred ChhhhhHHh-----------hhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCC
Confidence 876543322 11223589999999999999999999999875433 222233333445679999999994
Q ss_pred CC----CEEEEEeCCCeEEEEECCCCCCCceee-ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 323 QP----ELLLSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 323 ~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
.+ ..+++.....++.+|.+.- +.+. ...-.-...|+.+.|+|.+++.|+.|+.+.+|--. |-.+.
T Consensus 188 sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLG----- 257 (1081)
T KOG1538|consen 188 SGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLG----- 257 (1081)
T ss_pred CCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEe-----
Confidence 33 4788888888888888752 2221 11223345689999999999999999999999532 21111
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
....+..+ ++++...|+ +++++ .|+.||+|-.|++..
T Consensus 258 -Tvg~~D~W--IWtV~~~PN---------sQ~v~---~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 -TVGEQDSW--IWTVQAKPN---------SQYVV---VGCQDGTIACYNLIF 294 (1081)
T ss_pred -ecccccee--EEEEEEccC---------CceEE---EEEccCeeehhhhHH
Confidence 11122222 256777887 66776 789999999998754
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=6.4e-15 Score=145.98 Aligned_cols=290 Identities=24% Similarity=0.419 Sum_probs=206.8
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-eeEEecccCCCceEEEEE-ecCCCC-EEEEEeC-CCeEE
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRF-NPTNDG-TVYAASS-DGTVS 240 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~-~l~s~~~-dg~i~ 240 (546)
.+..|...|.++.|.+.+ ..++.++.|+.+.+|+..... ....+...+...+..+.+ +++ .. +++..+. ++.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEE
Confidence 466799999999999999 678888899999999998876 444443223347777777 777 55 5555444 89999
Q ss_pred EEECCC-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 241 CTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 241 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
+|++.. ......+..+.. .+..+.|+|++.++++++. ++.+++|++....... ....|...+.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 205 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSE---------SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLA 205 (466)
T ss_pred EEEecCCCeEEEEEecCcc---------cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE---eeccCCCceEEEE
Confidence 999997 666666655544 4889999999998888885 9999999998743322 3334667899999
Q ss_pred ECCCCCC-EEEEEeCCCeEEEEECCCCCCCceee--ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 319 CNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLC--DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 319 ~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
|+| ++. .+++++.|+.|++||.... ..+. ...|...+ ...|+|++.++++++.++.+++|++.....
T Consensus 206 ~~~-~~~~~~~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----- 275 (466)
T COG2319 206 FSP-DGGLLIASGSSDGTIRLWDLSTG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----- 275 (466)
T ss_pred EcC-CcceEEEEecCCCcEEEEECCCC---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----
Confidence 998 776 5555589999999988632 2333 23566664 338999998999999999999999986553
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc--CCCCCcccceeeecCC
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--DPNITTISPVNKLHPR 473 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~v~~~s~~ 473 (546)
..... ..+......+.|.|. +..++ +++.++.+.+|+..+........ .|. ..+..+ .|.++
T Consensus 276 ~~~~~--~~~~~~v~~~~~~~~---------~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~ 339 (466)
T COG2319 276 LLRTL--SGHSSSVLSVAFSPD---------GKLLA---SGSSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSL-SFSPD 339 (466)
T ss_pred EEEEE--ecCCccEEEEEECCC---------CCEEE---EeeCCCcEEEEEcCCCceEEEeeecccC-CceEEE-EECCC
Confidence 01111 111223345678884 34444 35555779999998877665554 443 356666 66434
Q ss_pred CcEEEEe-c-CCcEEEEcCCCCC
Q 009022 474 DDVLASG-S-SRSIFIWRPKEKS 494 (546)
Q Consensus 474 ~~~l~sg-s-dg~i~vwd~~~~~ 494 (546)
+..++.+ . |+.+.+|++....
T Consensus 340 ~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCEEEEeecCCCcEEeeecCCCc
Confidence 3556655 5 8999999998877
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=139.24 Aligned_cols=258 Identities=15% Similarity=0.188 Sum_probs=174.1
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|.+.|++|.|+.+ +++|++|+.|..+++|++...-..++ ..+.++.++.+...|.|++|......+++|..+++|
T Consensus 53 ~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 579999999999999 99999999999999999864321111 112223344444579999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-CCceeeecCCCCcEEEEEEeC-CC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAYFSP-SG 368 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~p-~~ 368 (546)
.+.|+.+.+.+... .-....+.|+.+..+| ..+.|++.+.++.|.+||.+... .+..+..........++.|+| ..
T Consensus 130 I~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVA-NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccceeeeee-cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987654321 1222345899999999 68899999999999999998765 344444445667788999999 67
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC-c---eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEE
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-P---FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 444 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~i 444 (546)
.+|++.+..+-+.+||++.... .+.....+..... . +.+.|+|.. ..+. +-.....-.+
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~~~G---------~Q~m---siRR~~~P~~ 270 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWSPSG---------NQFM---SIRRGKCPLY 270 (609)
T ss_pred eeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeCCCC---------Ceeh---hhhccCCCEE
Confidence 8889999999999999975432 1221111111111 1 467899984 2221 1111122345
Q ss_pred EECCchhhhHhhcCCCCCc------ccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 445 IDITTGQLVAEVMDPNITT------ISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~------i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
||+.+.++..--..|.... +.++ +|-- ...+++|+ +-.|++|.+..
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~-~F~~-D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSM-TFID-DYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeee-eeec-ceeeeccCcccceEEEecCC
Confidence 6776644332212333222 2222 4443 34589999 79999999753
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-15 Score=131.58 Aligned_cols=298 Identities=14% Similarity=0.163 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
-.+..++|++.- .-+|++..|-.|+||+-.. .....+.......|++++|-|.....|+.|+.. -|++|.....-..
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 357789999966 5688999999999999776 455555445667899999999977888888875 5999987533222
Q ss_pred ee----eecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 251 SL----MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 251 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
.. ...+......+....+|++|+|.++|..+++++ .+..|.+||..++...... ....+.+.-+.|+| ++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSP-dgd 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSP-DGD 251 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcC-CCC
Confidence 11 111111122223335799999999999999876 5679999999987754322 23334788999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC----CCC--Ccceee
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL----DSP--SREIVH 399 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~----~~~--~~~~~~ 399 (546)
+|+++.-|+..++|+.......... .-..+.|...+|+|.|++|+..+ .|.-++|.+..-.. ..+ ......
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw--~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERW--ILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEEecccceeeeehhcccceecce--eccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999976543322111 22345899999999998776554 34455665543211 100 001110
Q ss_pred ccCCc----------ccCCceeEEecCCCCCCceeEEeeeeeecCCCCc-----CcceEEEECCchhhhHhh-----cCC
Q 009022 400 SHDFN----------RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-----LHPIDFIDITTGQLVAEV-----MDP 459 (546)
Q Consensus 400 ~~~~~----------~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~-----d~~i~iwd~~~~~~~~~~-----~~~ 459 (546)
..++. ....+-+++|.|. |.|++..|-|.. ...|.+||++.--.+... .+.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDps---------GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge 399 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPS---------GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE 399 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCC---------CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC
Confidence 11100 0112347899998 666665554433 345677877643322211 122
Q ss_pred CCCcccceeeecC---CCcEEEEec-CCcEEEEcCC
Q 009022 460 NITTISPVNKLHP---RDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 460 ~~~~i~~v~~~s~---~~~~l~sgs-dg~i~vwd~~ 491 (546)
+ . ..++|+| +|++|..+= .|.|.-|.+.
T Consensus 400 ~-P---~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 400 Y-P---AYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred C-C---ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 1 2225666 566776665 7888877753
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1e-16 Score=144.58 Aligned_cols=277 Identities=17% Similarity=0.235 Sum_probs=200.5
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg 288 (546)
..|.+.|..|.|+.. +..|++++.|..|.+||...+.....+... |.. .|..-.|-| +...|++++.||
T Consensus 139 ~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG------H~~--NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESG------HCN--NVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred cCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccc------ccc--chhhhhccCCCCCcCceeccccC
Confidence 679999999999999 999999999999999999988877655422 111 244444655 456789999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCC---cEEEEEE
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR---VVNSAYF 364 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~ 364 (546)
.|++=.+..............|.++|..++.-|.....|++++.|+.+.-+|++.......+... .+.. ....++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99998876655555455667788899999999988889999999999999999876665444433 2333 5778999
Q ss_pred eC-CCCEEEEEeCCCcEEEEECCCCCCCCCCc---ceeeccCC-cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcC
Q 009022 365 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR---EIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 439 (546)
Q Consensus 365 ~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d 439 (546)
.| +..++++++.|..+++||.+.-......+ .....+.. .....+.+++|+.+. +.+++ ...|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--------sElLa----SYnD 357 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG--------SELLA----SYND 357 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc--------cceee----eecc
Confidence 99 66699999999999999987543321111 11111111 223334567777653 34443 5666
Q ss_pred cceEEEECCc--h----------hhhHh-hcCCC-CCcccceeeecCCCcEEEEecC-CcEEEEcCCCCCccceeeccce
Q 009022 440 HPIDFIDITT--G----------QLVAE-VMDPN-ITTISPVNKLHPRDDVLASGSS-RSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 440 ~~i~iwd~~~--~----------~~~~~-~~~~~-~~~i~~v~~~s~~~~~l~sgsd-g~i~vwd~~~~~~~~~~~~~~~ 504 (546)
-.|++|...- | ..+.. +.+|. ...|..++.|-|...|+++|+| |.|.||+-.+++.+.-+.+...
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~ 437 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH 437 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc
Confidence 7788885432 2 22233 66664 3457778889999999999996 9999999999999988887776
Q ss_pred EEEe
Q 009022 505 IIVC 508 (546)
Q Consensus 505 ~i~~ 508 (546)
+|+|
T Consensus 438 VVNC 441 (559)
T KOG1334|consen 438 VVNC 441 (559)
T ss_pred eEec
Confidence 6666
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=2.4e-15 Score=128.78 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=161.2
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+.--..+|+|.+|++++ ..+|.+-....|.||...... ........|...|+.|.|+|. .+.|++|+.|..-++|.
T Consensus 6 ~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccc
Confidence 33456799999999999 689999999999999987655 233333779999999999999 99999999999999999
Q ss_pred C-CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE-EeecCCCcEEEEEECC
Q 009022 244 L-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNP 321 (546)
Q Consensus 244 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~p 321 (546)
. ..++-..++.+- +.....+++.|+|..+.|++|+....|.+|-+.......... ........|+++.|+|
T Consensus 84 ~~~~~~WkptlvLl-------RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLL-------RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred cCCCCeeccceeEE-------EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 8 444333222211 112358999999999999999999999999887654331111 1112334799999999
Q ss_pred CCCCEEEEEeCCCeEEEEECC-----CCCC----------Cceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 322 IQPELLLSCGNDHFARIWDIR-----RLEA----------GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~-----~~~~----------~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
++-+|++|+.|+..+||..- .... +..+... ...+.|..+.|+|+|..|+-.+.|.++.+-|.
T Consensus 157 -nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 157 -NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred -CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999999999999998641 1110 1122222 45678999999999999999999999999998
Q ss_pred CCCC
Q 009022 386 IFGN 389 (546)
Q Consensus 386 ~~~~ 389 (546)
....
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 6553
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.3e-16 Score=132.42 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=117.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 228 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
..++++...|.|++||..+++.+..++.++.. ++.+.|.. ....+.+++.||.|++||+|.........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~---------~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT---------TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc---------ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 56888888999999999999999999877653 66777766 57889999999999999999876654432
Q ss_pred EeecCCCcEEEEEECCCCCCEEEEEe----CCCeEEEEECCCCCCCceeeec--CCCCcEEEEEEeC-CCCEEEEEeCCC
Q 009022 306 LIHRKGSKVVGLHCNPIQPELLLSCG----NDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSP-SGSKILTTSQDN 378 (546)
Q Consensus 306 ~~~~~~~~i~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p-~~~~l~s~s~dg 378 (546)
.....+.+..+++.+- +.+++++|. .+-.|.+||+|..+. .+..+ .|...|+++.|+| +.++|++||.||
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 2222334677777765 677888876 366899999997554 23333 6999999999999 888999999999
Q ss_pred cEEEEECCC
Q 009022 379 RLRIWDSIF 387 (546)
Q Consensus 379 ~i~vwd~~~ 387 (546)
.|.|||+..
T Consensus 189 LvnlfD~~~ 197 (376)
T KOG1188|consen 189 LVNLFDTKK 197 (376)
T ss_pred eEEeeecCC
Confidence 999999864
No 200
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.9e-16 Score=130.69 Aligned_cols=252 Identities=17% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeecc-ccCCCeEEEEEcCCCCcEE
Q 009022 108 GHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIR-YHSRRVTCLEFHPTNNHIL 186 (546)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l 186 (546)
+|...+....+.....+.++...+...+|.+...+... .+. .|...|+.+.--|++ -|
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~d--~l 70 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPND--SL 70 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCCc--ch
Confidence 55533333333444557777777777888776665532 233 477789999988875 38
Q ss_pred EEEcCCCcEEEEeCCCCce--------------eEEec--------------------------------------ccCC
Q 009022 187 LSGDKKGQVGVWDFYKVSE--------------KIVYG--------------------------------------NIHS 214 (546)
Q Consensus 187 ~s~~~d~~i~iwd~~~~~~--------------~~~~~--------------------------------------~~~~ 214 (546)
.+-+.|+.+.+|++..... ...+. .+..
T Consensus 71 ~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 71 DTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred hhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 8889999999999854211 00000 0112
Q ss_pred CceEEEEEecCCC--CEEEEEeCCCeEEEEECCCCceeeeeecCCCCC-CCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 215 CIVNNIRFNPTND--GTVYAASSDGTVSCTDLETGLALSLMNVNPNGW-HGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 215 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
+.+.+..|....+ -+|++|..+|.+.+||+.++..+..+....... .-..+..++.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3355554322212 245667789999999999985544433221111 1122334688999988777777888888899
Q ss_pred EEeCCCCCC--C-cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 292 LVDARTNSR--S-GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 292 i~d~~~~~~--~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
.|++..... . ....... ...|..+.+-| ++..+|+++.|+.||||..++..+...+. .|...|++++|+|+.
T Consensus 231 ~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLk--yHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLK--NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLK--YHSAGVNAVAFSPDC 305 (323)
T ss_pred eeeeccccCcccccceEEec--CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhh--hhhcceeEEEeCCCC
Confidence 998865422 1 1111222 22588899999 99999999999999999999877655554 488999999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 009022 369 SKILTTSQDNRLRIWDS 385 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~ 385 (546)
.++|.++.|++|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3.9e-15 Score=148.77 Aligned_cols=275 Identities=16% Similarity=0.164 Sum_probs=179.8
Q ss_pred EeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce-----eeeeecCCCCCCCCCcccceEEE
Q 009022 198 WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGM 272 (546)
Q Consensus 198 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~ 272 (546)
|++. +..+..+ ..|...|..++.++..+.+|++|+.||+|++|+++.-.. ......+. ....+.++
T Consensus 1034 W~p~-G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-------~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-------EGSRVEKV 1104 (1431)
T ss_pred CCcc-ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-------cCCceEEE
Confidence 4443 2333333 568888999999888569999999999999999874321 12222221 12358889
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCcce------EEeecCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCC
Q 009022 273 DINPEKGVVLVADNFGFLYLVDARTNSRSGEA------ILIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 273 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~ 345 (546)
.+.+.+..+|+++.||.|.+.++......... ......+.-+..-++...... .++.+..-+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 99999999999999999999998763211111 011222222333344332344 78888889999999998765
Q ss_pred CCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeE
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 425 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 425 (546)
....++.....+.|++++.+|.++++++|+..|.+.+||++.+..+ .+..+.....+..+..+|..+.....+
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-------~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-------LSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-------ecccCcccCCcceEEeeccCCCCceEE
Confidence 5444443345678999999999999999999999999999876543 334444444444555566544333333
Q ss_pred EeeeeeecCCCC-cCcceEEEECCchhhhHhhcCCC----------------CCcccce-eeecCCCcEEEEec-CCcEE
Q 009022 426 IGRYISENYNGA-ALHPIDFIDITTGQLVAEVMDPN----------------ITTISPV-NKLHPRDDVLASGS-SRSIF 486 (546)
Q Consensus 426 ~g~~~~~~~~g~-~d~~i~iwd~~~~~~~~~~~~~~----------------~~~i~~v-~~~s~~~~~l~sgs-dg~i~ 486 (546)
. +|. ..+.|.+|++.+|.+...+.... ...+..+ ..+..-+.++.+|+ |..|+
T Consensus 1258 s--------~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1258 S--------AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred E--------ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 2 233 67889999999986655554321 0111111 02333456777777 99999
Q ss_pred EEcCCCCCcc
Q 009022 487 IWRPKEKSEL 496 (546)
Q Consensus 487 vwd~~~~~~~ 496 (546)
.||....+..
T Consensus 1330 ~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1330 KWDPTRPEIS 1339 (1431)
T ss_pred eccCCCcccc
Confidence 9999876544
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=1.3e-14 Score=136.68 Aligned_cols=296 Identities=18% Similarity=0.214 Sum_probs=184.6
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
++++-..++.|.|.|..+.+....+..+ ...-..+.|+|+ ++++++++.||.|.++|+.+++.+..+....
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------- 78 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVGG------- 78 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecCC-------
Confidence 3456667899999999998888887433 333455789999 9999999999999999999999998887654
Q ss_pred cccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeec----CCCcEEEEEECCCCCC-EEEEEeCCCeEEE
Q 009022 265 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR----KGSKVVGLHCNPIQPE-LLLSCGNDHFARI 338 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~~~p~~~~-~l~~~~~dg~i~i 338 (546)
...+++++++|++++++. ..+.+.++|..+.+....+..... ....+.++..+| ... ++++.-..+.|.+
T Consensus 79 ---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 79 ---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp ---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEE
T ss_pred ---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEE
Confidence 378899999999999875 689999999998776554322211 234677888888 555 5555555688988
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCCCCCC---------Cc--ceeeccC----
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSP---------SR--EIVHSHD---- 402 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~~~~~~---------~~--~~~~~~~---- 402 (546)
.|....+. ................|+|++++++++ ...+.|-++|..++++... .+ ...+...
T Consensus 155 Vdy~d~~~-~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 155 VDYSDPKN-LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EETTTSSC-EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred EEeccccc-cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 89875432 222333455667889999999988765 4467888999887654220 00 0000000
Q ss_pred -----------------Cc--------------ccCCceeEEecCCCCCCceeEEeeeeeec-CCCCcCcceEEEECCch
Q 009022 403 -----------------FN--------------RHLTPFRAEWDPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTG 450 (546)
Q Consensus 403 -----------------~~--------------~~~~~~~~~~~p~~~~~~~~~~g~~~~~~-~~g~~d~~i~iwd~~~~ 450 (546)
.. ....++-+..+|+ ++++... +.+...+.|.|+|..+.
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~---------s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPD---------SRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT----------SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCC---------CccEEeeccCCCCCceEEEEECcCc
Confidence 00 0000011222333 4555433 34566789999999999
Q ss_pred hhhHhhcCCCCCcccceeeecCCCcEEEEec---CCcEEEEcCCCCCccceeeccce
Q 009022 451 QLVAEVMDPNITTISPVNKLHPRDDVLASGS---SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs---dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
+.+.++.......+..+ .|+++|+.+..+. ++.|.|||..+.+++.++...++
T Consensus 305 ~~~~~i~~~~~~~~~h~-ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~tP 360 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHM-EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPTP 360 (369)
T ss_dssp EEEE-HHHHHT--EEEE-EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--SE
T ss_pred ceeEEEeccCCCcEecc-EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeCC
Confidence 87766643322235556 8999999777654 34899999999999999885554
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=9.7e-16 Score=139.88 Aligned_cols=263 Identities=16% Similarity=0.225 Sum_probs=170.4
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEE-eCCCCceeEEecccCCCceEEEE-Eec------CCCCEEEEEeCCCeE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVW-DFYKVSEKIVYGNIHSCIVNNIR-FNP------TNDGTVYAASSDGTV 239 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~v~~~~-~~~------~~~~~l~s~~~dg~i 239 (546)
-|...|.|+.|+.+. ..+.+++ |..+.+| ++.+... ..... ....|...- .-+ .+...|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~e-ei~~~~d-Dh~~~~~~~~~~~s~-~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIYFVSD-DHQIFKWSDVSRDSV-EVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccc-eEEEecc-CceEEEeecccchhh-hhhhC-CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 477778899999887 4555555 5555555 4443221 11100 111111111 111 125678999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
.+.+- .++....+..|.. .+.+-.|+|+|.-|++++.||.|++|.-..+-. ..+ .....+|+|++|
T Consensus 88 ~il~k-~~rVE~sv~AH~~---------A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR-Stl---~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 88 VILNK-SARVERSISAHAA---------AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR-STV---VQNEESIRCARW 153 (737)
T ss_pred EEecc-cchhhhhhhhhhh---------hhhhcccCCCCceeeeecCCceEEEEeccchHH-HHH---hhcCceeEEEEE
Confidence 99874 3555555544433 588889999999999999999999998544321 111 223348999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
.|...+.+++.+ +.+.|=-+.. ....++...|.+-|.++.|+|..+++++|+.|-..+|||.....+..
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~------- 222 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT------- 222 (737)
T ss_pred CCCCCceEEecC--CeEEEeeccc--ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc-------
Confidence 995555666544 4565555542 23466666899999999999999999999999999999976433311
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
+. .......+++|+|+ ..|+ +|...+.+ |..+..+.+..+ +||+||..++.
T Consensus 223 S~--~~ey~ITSva~npd---------~~~~-------------v~S~nt~R----~~~p~~GSifnl-sWS~DGTQ~a~ 273 (737)
T KOG1524|consen 223 SA--AEEYAITSVAFNPE---------KDYL-------------LWSYNTAR----FSSPRVGSIFNL-SWSADGTQATC 273 (737)
T ss_pred CC--hhccceeeeeeccc---------ccee-------------eeeeeeee----ecCCCccceEEE-EEcCCCceeec
Confidence 11 11122347899997 1121 33333332 555666888888 99999999999
Q ss_pred ec-CCcEEEE
Q 009022 480 GS-SRSIFIW 488 (546)
Q Consensus 480 gs-dg~i~vw 488 (546)
|. .|.+.+=
T Consensus 274 gt~~G~v~~A 283 (737)
T KOG1524|consen 274 GTSTGQLIVA 283 (737)
T ss_pred cccCceEEEe
Confidence 88 6766543
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=3.8e-17 Score=156.46 Aligned_cols=244 Identities=19% Similarity=0.223 Sum_probs=183.1
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|...|.|+.|... +.++++|+.|..++||.+.++.++....++.. .|+.++.+.+..++++++.|..|
T Consensus 187 lgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~---------ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSG---------DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred Hhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCcc---------ccchhccchhhhhhhhcccCceE
Confidence 579999999999999 99999999999999999999999988877665 48899999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC---ceeeecCCCCcEEEEEEeCC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG---SSLCDLPHKRVVNSAYFSPS 367 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~p~ 367 (546)
++|-+..+.++. .+.+|.+.|++|+|+| ..+.+.||++++||.+-.... ..+. +.....+.++.|..+
T Consensus 257 rvWrl~~~~pvs---vLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~-~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 257 RVWRLPDGAPVS---VLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLK-FTEKDLVDSILFENN 327 (1113)
T ss_pred EEEecCCCchHH---HHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCC-cccccceeeeecccc
Confidence 999999987665 3466777999999999 337788999999999721110 1111 123456778888889
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 368 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
+.-++|++.|+.-..|.+..-.... . .+.|....... ..+.. +.-.+..+++|++
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~--~---------------~lif~t~ssd~-----~~~~~---~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRS--N---------------LLIFVTRSSDL-----SSIVV---TARNDHRLCVWNL 382 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhc--c---------------ceEEEeccccc-----cccce---eeeeeeEeeeeec
Confidence 9999999999999888764211100 0 11111110000 01111 4555677899999
Q ss_pred CchhhhHhhcCCCCCcccceeeecCCCcEEE-Eec-CCcEEEEcCCCCCccceee
Q 009022 448 TTGQLVAEVMDPNITTISPVNKLHPRDDVLA-SGS-SRSIFIWRPKEKSELVEQK 500 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~-sgs-dg~i~vwd~~~~~~~~~~~ 500 (546)
.+|.++..+.+|. ..+..+ .++|-+..++ +++ ||...|||+-.|.+++...
T Consensus 383 ~~g~l~H~l~ghs-d~~yvL-d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHS-DEVYVL-DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred ccchhhhhhcccc-cceeee-eecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 9999999988876 555555 8999665555 577 9999999999998776553
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.5e-15 Score=133.63 Aligned_cols=217 Identities=13% Similarity=0.091 Sum_probs=168.8
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc----eeEEecccCCCceEEEEEecCCCCEEEEEeCC--Ce
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GT 238 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~ 238 (546)
......++|..+... +| .|++|-.+|.+.+|....+. .+..+ ....++..+.-++.....+++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhc-CC--EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccc
Confidence 344566777777765 34 58888889999999988432 22222 1335677777777756777789998 88
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+.+||+...+.+..-+..+...-+...+..++.+.|-+. ...|++++.-+.|++||.+.++.+...+.+..+ ++++
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~--~is~ 252 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN--PISS 252 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC--ccee
Confidence 999999988766665555554445555556788999988 899999999999999999987766554444444 8999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+...| .++++++|..-|.+..||++.++...+. ..+..+.|++|..+|.+.+|++++.|..|||+|+.+.++
T Consensus 253 ~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 253 TGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeecC-CCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 99999 9999999999999999999976653331 126788999999999999999999999999999998665
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=3.5e-15 Score=127.80 Aligned_cols=223 Identities=12% Similarity=0.141 Sum_probs=166.7
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc---eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 289 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 289 (546)
...+|+|.+|+++ ...++.+.....|.||.....+ ...++..|.. .|++++|+|..+.|++++.|..
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~---------~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK---------IVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCc---------ceeEEeecCCCCceeEccCCCC
Confidence 4578999999999 9999999999999999987665 2333333332 5899999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee--eecCCCCcEEEEEEeCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL--CDLPHKRVVNSAYFSPS 367 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~p~ 367 (546)
-++|....+......+.+..+....+++.|+| .++.|++|+.-..|.||-+.....--.- ...++.+.|+++.|+|+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99999965554444555566666899999999 9999999999999999988643321111 12267888999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEE-
Q 009022 368 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID- 446 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd- 446 (546)
+-+|++|+.|+.++||..--....... .|. -|.
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekp--------------------ap~--------------------------pWgs 191 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKP--------------------APT--------------------------PWGS 191 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCC--------------------CCC--------------------------CCcc
Confidence 999999999999999976322111000 000 011
Q ss_pred -CCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 447 -ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 447 -~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+.-|+++..+. ...+.+..+ .|+|+|..|+-.+ |+.+.+=|.....
T Consensus 192 k~PFG~lm~E~~-~~ggwvh~v-~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 192 KMPFGQLMSEAS-SSGGWVHGV-LFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCcHHHHHHhhc-cCCCceeee-EeCCCCCEeeEecCCCceEEeecCCCc
Confidence 12355555553 333667777 8999999999988 9999999987664
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.9e-14 Score=115.67 Aligned_cols=206 Identities=20% Similarity=0.288 Sum_probs=150.0
Q ss_pred CCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce------eE-EecccCC-----CceEEEEEecC
Q 009022 158 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KI-VYGNIHS-----CIVNNIRFNPT 225 (546)
Q Consensus 158 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~-~~~~~~~-----~~v~~~~~~~~ 225 (546)
|.+..+...++|.++|+.++|.. .+|++|+ ||.|+=|....... .. .....|. -.|+++...|.
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 33444556789999999999983 4677777 59999998764322 11 1111222 35889999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 226 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
.+-++.++.|+.++.||+++|+..+.++.|.. .+.++.-......+++|+.||.+++||.++.+....+-
T Consensus 126 -enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD---------YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 126 -ENSILFAGGDGVIYQVDLEDGRIQREYRGHTD---------YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred -CCcEEEecCCeEEEEEEecCCEEEEEEcCCcc---------eeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 66666666899999999999999999988776 37888876667789999999999999999987654321
Q ss_pred Ee------e-cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 306 LI------H-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 306 ~~------~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
.. . .-+..|-+++.+ ..++++|+ ...+.+|.++..++... ++....|..+.|. ...+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~---edWlvCGg-Gp~lslwhLrsse~t~v---fpipa~v~~v~F~--~d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSSESTCV---FPIPARVHLVDFV--DDCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEecc---CceEEecC-CCceeEEeccCCCceEE---EecccceeEeeee--cceEEEecccc
Confidence 11 1 123357777764 57888876 56799999997665433 3456778888884 56678888888
Q ss_pred cEEEEECC
Q 009022 379 RLRIWDSI 386 (546)
Q Consensus 379 ~i~vwd~~ 386 (546)
.|.-|.+.
T Consensus 267 ~v~~~~l~ 274 (325)
T KOG0649|consen 267 HVQSYTLN 274 (325)
T ss_pred ceeeeeec
Confidence 99999874
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=5.4e-15 Score=135.10 Aligned_cols=188 Identities=13% Similarity=0.207 Sum_probs=139.0
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+.+..|.++|.|-.|+|+| .-|+|++.||.|+||.-... ....+ .....+|.|++|.|+..+.+++.+ +.+.|=-
T Consensus 98 ~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-LRStl-~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKp 172 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-LRSTV-VQNEESIRCARWAPNSNSIVFCQG--GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-HHHHH-hhcCceeEEEEECCCCCceEEecC--CeEEEee
Confidence 3467899999999999999 67999999999999996543 22222 346779999999999555555544 4566655
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
+.....+...+.|.. .|.++.|++..+.+++|+.|-..++||..... ++....|..+|++++|+| +
T Consensus 173 L~~n~k~i~WkAHDG---------iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey~ITSva~np-d 238 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDG---------LVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEYAITSVAFNP-E 238 (737)
T ss_pred cccccceeEEeccCc---------EEEEeecCccccceeecCCceeEEeecccCcc----cccCChhccceeeeeecc-c
Confidence 555444445544433 59999999999999999999999999976532 223344556999999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
..++.++. +++++ ..+..+.|..++|+++|..++.|+..|.+.+=-+
T Consensus 239 -~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 239 -KDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred -cceeeeee-eeeee-------------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 55666553 23431 1135678999999999999999999998766443
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.2e-14 Score=131.28 Aligned_cols=285 Identities=14% Similarity=0.173 Sum_probs=192.2
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.|....+.|..+|+|..+||||..--.|++||+.+....... ......|.-.-.+.+ -..++.-..|.+|-+...- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae~V~feiLsDD-~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-cccccceeEEEeccc-hhhheEeecCceeeehhhc-C
Confidence 478888999999999777889999999999999876554443 112333444444444 4455555566777654322 2
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.. ..+..+ ..-..|+++.-..-|++++....|+-+++..+..+..+ ....+.++++..++ ...+|
T Consensus 126 ~h-y~~RIP----------~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 126 RH-YRTRIP----------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ee-eeeecC----------cCCccccccCCCccEEEeecCcceEEEEcccccccccc---ccccccceeeeecC-ccceE
Confidence 11 111111 12345556544444555556678999999998876533 33335799999999 88899
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeec----CCC-----CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDL----PHK-----RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~-----~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
++|+.+|.|..||.+.......+... .|. ..|+++.|+.+|-.+++|+..|.|.|||+++.+. +
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-------l 263 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-------L 263 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-------e
Confidence 99999999999999875543333221 122 3499999999999999999999999999987654 2
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEE
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 478 (546)
..........+..+.|.+.+....+. ......++|||-.+|+....+... ..+..+ ++-|++-+++
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~-----------S~Dk~~~kiWd~~~Gk~~asiEpt--~~lND~-C~~p~sGm~f 329 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVV-----------SMDKRILKIWDECTGKPMASIEPT--SDLNDF-CFVPGSGMFF 329 (703)
T ss_pred eecccCCccceeeecccccCCCceEE-----------ecchHHhhhcccccCCceeecccc--CCcCce-eeecCCceEE
Confidence 23333444455678887764322222 234467999999999988877543 335666 6778888888
Q ss_pred Eec-CCcEEEEcCC
Q 009022 479 SGS-SRSIFIWRPK 491 (546)
Q Consensus 479 sgs-dg~i~vwd~~ 491 (546)
+|- ++.+..|=+.
T Consensus 330 ~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 330 TANESSKMHTYYIP 343 (703)
T ss_pred EecCCCcceeEEcc
Confidence 888 6666655443
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1e-14 Score=125.44 Aligned_cols=286 Identities=15% Similarity=0.193 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
-+.|.-|.|..+.-.+|.....++.|.+|++...+-...+ ..-..++.+++|+|++...|.+...+-.|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 3567788999887555666778999999999988877777 456678999999999446777788899999999998765
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
.... .+.. .+..++|+|+|++.+..++-.....+.+...+....+..+.......+.+.|+| +++.|+
T Consensus 127 ~~~~-~pK~---------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~la- 194 (447)
T KOG4497|consen 127 YLLP-HPKT---------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLA- 194 (447)
T ss_pred EEec-cccc---------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEE-
Confidence 4332 1111 368899999999999887653322222221111111111222233578899999 877766
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC----------------
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP---------------- 393 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~---------------- 393 (546)
+||.- ....+......-.+..+.|+|.+++|++|+.|+.+||.+--+.+....
T Consensus 195 --------Vwd~~---Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ 263 (447)
T KOG4497|consen 195 --------VWDNV---LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLE 263 (447)
T ss_pred --------Eecch---hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhh
Confidence 45531 111222223345688899999999999999999999876533221100
Q ss_pred ---------------------------Cccee--------ec------cCC-cccCCceeEEecCCCCCCceeEEeeeee
Q 009022 394 ---------------------------SREIV--------HS------HDF-NRHLTPFRAEWDPKDPSESLAVIGRYIS 431 (546)
Q Consensus 394 ---------------------------~~~~~--------~~------~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 431 (546)
..+.. .. .++ +.....-.++|+++ ..|++
T Consensus 264 ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D---------s~y~a 334 (447)
T KOG4497|consen 264 KETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD---------STYAA 334 (447)
T ss_pred hhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC---------ceEEe
Confidence 00000 00 000 00111123556655 55555
Q ss_pred ecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 432 ENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 432 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
.. ....-+.+-+||++..++...+...+ .|... .|+|....|+.+. ...+++|.+.-
T Consensus 335 Tr-nd~~PnalW~Wdlq~l~l~avLiQk~--piraf-~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 335 TR-NDKYPNALWLWDLQNLKLHAVLIQKH--PIRAF-EWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ee-cCCCCceEEEEechhhhhhhhhhhcc--ceeEE-EeCCCCceEEEEcCCceEEEEcCCC
Confidence 22 34445789999999888777664433 34444 7999888777766 78899998764
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=6.9e-14 Score=120.00 Aligned_cols=238 Identities=13% Similarity=0.156 Sum_probs=152.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCc--eEEEEEecCCCCEEEE-EeCC------CeEEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI--VNNIRFNPTNDGTVYA-ASSD------GTVSCT 242 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s-~~~d------g~i~iw 242 (546)
...+++|+.|. ..+++|..+ -.+||+++..+..... ..+.+. +.-+-|- .++|+. |+.. +.|.||
T Consensus 7 ~~lsvs~NQD~-ScFava~~~-Gfriyn~~P~ke~~~r-~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDH-SCFAVATDT-GFRIYNCDPFKESASR-QFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCC-ceEEEEecC-ceEEEecCchhhhhhh-ccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEE
Confidence 34459999988 567776655 4999998764332222 122222 2223333 345444 3332 579999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|=....++..+.... +|.++.+.++ .|++.- .+.|++|.....-.....+..........+++-..
T Consensus 81 DD~k~~~i~el~f~~----------~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~- 146 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS----------EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS- 146 (346)
T ss_pred ecccCcEEEEEEecc----------ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-
Confidence 977777777776654 4888888765 344443 47899999874332222222222222344443333
Q ss_pred CCCEEEE-EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCCCCCCCcceeec
Q 009022 323 QPELLLS-CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-LRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 323 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~ 400 (546)
+..+||. |-.-|.|+|-|+.......+.....|.+.|.|++++-+|.++||+|..|+ |||||..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-------------- 212 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-------------- 212 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC--------------
Confidence 3345554 34579999999987665434444589999999999999999999998886 4555554
Q ss_pred cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc-CCCCCcccceeeecCCCcEEEE
Q 009022 401 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~s 479 (546)
+|++++.+. |-....++++ +|||+..+||+
T Consensus 213 ------------------------------------------------~g~~l~E~RRG~d~A~iy~i-aFSp~~s~Lav 243 (346)
T KOG2111|consen 213 ------------------------------------------------DGTLLQELRRGVDRADIYCI-AFSPNSSWLAV 243 (346)
T ss_pred ------------------------------------------------CCcEeeeeecCCchheEEEE-EeCCCccEEEE
Confidence 444444443 3334667788 99999999999
Q ss_pred ec-CCcEEEEcCCC
Q 009022 480 GS-SRSIFIWRPKE 492 (546)
Q Consensus 480 gs-dg~i~vwd~~~ 492 (546)
+| -|+|.||.+..
T Consensus 244 sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCeEEEEEeec
Confidence 99 59999998765
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=8.9e-14 Score=131.74 Aligned_cols=252 Identities=12% Similarity=0.168 Sum_probs=154.8
Q ss_pred CCCeEEEEEcCCCCcEEE-EEcCCCcEEEEeCCC-CceeEEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEEEECCC
Q 009022 170 SRRVTCLEFHPTNNHILL-SGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLET 246 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~-s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 246 (546)
.+....++++|++ ++|+ ++..++.|.+|++.. +.....-..........++|+|+ +++|++++. ++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECC
Confidence 3567789999999 4554 445688999999973 22211111123345678999999 777777664 88999999974
Q ss_pred Cc-eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcc----eEEeecCCCcEEEEEEC
Q 009022 247 GL-ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGE----AILIHRKGSKVVGLHCN 320 (546)
Q Consensus 247 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----~~~~~~~~~~i~~~~~~ 320 (546)
.. ......... . ...+.+++++|+++++++++ .++.|.+||+.+...... .... ..+.....+.|+
T Consensus 112 ~g~~~~~~~~~~----~---~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~ 183 (330)
T PRK11028 112 DGIPVAPIQIIE----G---LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFH 183 (330)
T ss_pred CCCCCCceeecc----C---CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEEC
Confidence 32 211111100 0 01356788999999886654 569999999976332211 1111 122356789999
Q ss_pred CCCCCEEEEEeC-CCeEEEEECCCCC-CCceeeec---C----CCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCCC
Q 009022 321 PIQPELLLSCGN-DHFARIWDIRRLE-AGSSLCDL---P----HKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL 390 (546)
Q Consensus 321 p~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~---~----~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~~ 390 (546)
| ++++++++.. ++.|.+|++.... ....+..+ + +......+.++|++++|+++.. ++.|.+|++.....
T Consensus 184 p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 184 P-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred C-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 9 8898877765 8999999997321 11112111 1 1223446889999999988854 78999999864321
Q ss_pred CCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 391 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
.. .+...... ...+..+.++|+ |+++.. +...+++|.+|++.
T Consensus 263 ~~---~~~~~~~~--~~~p~~~~~~~d---------g~~l~v--a~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 VL---SFEGHQPT--ETQPRGFNIDHS---------GKYLIA--AGQKSHHISVYEID 304 (330)
T ss_pred eE---EEeEEEec--cccCCceEECCC---------CCEEEE--EEccCCcEEEEEEc
Confidence 10 01111001 112335677777 666652 23447899999774
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=2.2e-15 Score=129.46 Aligned_cols=222 Identities=12% Similarity=0.110 Sum_probs=145.9
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
.+|||+| +++|+++.- .+.|-|..+.+....+. --..|..+.|..+.-..|.....++.|.+|++....-...+..
T Consensus 14 c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCG-NYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCC-Ceeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 4699999 799999865 78888888766555443 2456788999988333444566788999999988777666655
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.+. .+.+++|+|+|+.|+. ..-+-.|.+|.+.+.+... +....+ .+..++|+| ++++.+..++-.
T Consensus 90 g~a---------gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~--~~kg~~f~~-dg~f~ai~sRrD 155 (447)
T KOG4497|consen 90 GQA---------GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKT--NVKGYAFHP-DGQFCAILSRRD 155 (447)
T ss_pred CCC---------cceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccccc--CceeEEECC-CCceeeeeeccc
Confidence 443 4889999999965555 5567899999998865432 222233 568999999 999988887542
Q ss_pred eEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCCCCCCCcceeeccCCcccCCcee
Q 009022 335 FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ--DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR 411 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (546)
..-.+.+...+.-..+..+ -..-..+.+.|+|+|+.|++-.. +-.|..|.-. .....
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~k~ 215 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGLKF 215 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------------cceeE
Confidence 2222222111111111111 13345678999999998886432 2233333322 22236
Q ss_pred EEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 412 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 412 ~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
+.|+|. +++++ .|+.|+.+||.+-
T Consensus 216 v~wsP~---------~qfla---vGsyD~~lrvlnh 239 (447)
T KOG4497|consen 216 VEWSPC---------NQFLA---VGSYDQMLRVLNH 239 (447)
T ss_pred EEeccc---------cceEE---eeccchhhhhhce
Confidence 788887 77777 7788877777543
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=136.67 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=162.4
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.-+.+.++.+| +.|+.|+.-|.|..+|+.+......+. -...|..+.|..+ ..+||++- ...++|||-. |..+.
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQ-K~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN-EQFFAVAQ-KKYVYVYDNN-GTELH 204 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc-hHHHHhhh-hceEEEecCC-CcEEe
Confidence 45678999999 789999999999999999988877764 5567999999887 66666665 4789999954 55555
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.++.+. .|..+.|-|..-+|++++..|.+..-|+.+++.+..+ ....+.+..++-+| -+..+-+|.
T Consensus 205 Clk~~~----------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~---~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 205 CLKRHI----------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI---RTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ehhhcC----------chhhhcccchhheeeecccCCceEEEeechhhhhHHH---HccCCccchhhcCC-ccceEEEcC
Confidence 544332 4888999999999999999999999999999877644 33344788889999 778899999
Q ss_pred CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 332 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
..|+|.+|......+ .+..+.|.++|.+|++.++|.|++|.+.|..++|||+++...
T Consensus 271 snGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred CCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 999999999876544 445568999999999999999999999999999999987653
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-14 Score=141.69 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=154.2
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCCCCCCCCCcccc
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (546)
+..|.|||...... ..+ ..|...+...+|+|+ ++.|+.++.+ ..|++||+.++.......... .
T Consensus 183 ~~~i~i~d~dg~~~-~~l-t~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----------~ 249 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIV-NRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----------H 249 (429)
T ss_pred eEEEEEECCCCCCc-eEe-ccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----------c
Confidence 46899999876553 333 457788999999999 8888877653 469999998876433221111 1
Q ss_pred eEEEEecCCCCEEEEEe-CCCcEE--EEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCC
Q 009022 269 LYGMDINPEKGVVLVAD-NFGFLY--LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRL 344 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~-~dg~i~--i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~ 344 (546)
...++|+|+|+.|+.+. .+|.+. +||+.++.. .....+...+....|+| ++..|+..+ .+|...||++...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP----SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe----EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 34578999999888864 577654 456655432 12233444678899999 888766554 5788888887542
Q ss_pred CCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCcee
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 424 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 424 (546)
.... ..+.+.. .++.|+|+|++|+..+.++ +.+||+.++..... .... ......|+|+
T Consensus 325 ~~~~--~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l------t~~~----~~~~~~~sPd------- 382 (429)
T PRK01742 325 GGGA--SLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL------SSTF----LDESPSISPN------- 382 (429)
T ss_pred CCCe--EEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe------cCCC----CCCCceECCC-------
Confidence 2211 2223333 4578999999998887765 66699988754211 0011 1125678998
Q ss_pred EEeeeeeecCCCCcCcceEEEEC--CchhhhHhhcCCCCCcccceeeecCC
Q 009022 425 VIGRYISENYNGAALHPIDFIDI--TTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 425 ~~g~~~~~~~~g~~d~~i~iwd~--~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
|++++ .++.++.+.+|.+ .+|..+..+..+. +.+... +|+|-
T Consensus 383 --G~~i~---~~s~~g~~~~l~~~~~~G~~~~~l~~~~-g~~~~p-~wsp~ 426 (429)
T PRK01742 383 --GIMII---YSSTQGLGKVLQLVSADGRFKARLPGSD-GQVKFP-AWSPY 426 (429)
T ss_pred --CCEEE---EEEcCCCceEEEEEECCCCceEEccCCC-CCCCCc-ccCCC
Confidence 76666 4555677777775 3677777776554 455556 89884
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.5e-14 Score=127.30 Aligned_cols=265 Identities=17% Similarity=0.235 Sum_probs=176.1
Q ss_pred CCCceEEEEEecCCCCEEE-EEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 213 HSCIVNNIRFNPTNDGTVY-AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
-...|..++|.-++...++ ..+.+..+..+.+...........-. ..+-....|..+.. -...|++|..+|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~---~~~l~~~~I~gl~~--~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK---TVSLGTKSIKGLKL--ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc---ccccccccccchhh--cCCEEEEEecCCcEE
Confidence 3456777888765433344 44366667766666554433320000 00000012333332 345688888999999
Q ss_pred EEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC--CeEEEEECCCCCCCceeeec---------CCCCcEE
Q 009022 292 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--HFARIWDIRRLEAGSSLCDL---------PHKRVVN 360 (546)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~~~v~ 360 (546)
+|....+......+.....+..+..+.-+|....++++|+.. ..+.|||+.+.+. .+... .-+-+++
T Consensus 129 ~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--iw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee--eeeccCCCCccccceeeeeec
Confidence 999986553333323333344788888888778888899988 8899999976422 22211 2345788
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCc
Q 009022 361 SAYFSPS--GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 438 (546)
Q Consensus 361 ~~~~~p~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~ 438 (546)
.+.|-|. ...|++++.-+.|++||.+.++. | +....+..+ ...++...|. |+++. +|..
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--P----V~~fd~~E~-~is~~~l~p~---------gn~Iy---~gn~ 267 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--P----VAQFDFLEN-PISSTGLTPS---------GNFIY---TGNT 267 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCc--c----eeEeccccC-cceeeeecCC---------CcEEE---Eecc
Confidence 8999986 88999999999999999986542 2 222222211 1122333444 66655 7888
Q ss_pred CcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 439 LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 439 d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
-+.+..||++++..+......-.+.+..+ ..+|.+++||+++ |..|||+|+.+.+++..++..+.
T Consensus 268 ~g~l~~FD~r~~kl~g~~~kg~tGsirsi-h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLKGITGSIRSI-HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR 333 (412)
T ss_pred cchhheecccCceeeccccCCccCCcceE-EEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc
Confidence 89999999999998887555555888888 8999999999999 99999999999888887766554
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-14 Score=127.13 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=147.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCce
Q 009022 270 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 349 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 349 (546)
..++|+.+|..+++++.||.+++|+........ ....|...|.++.|+| ++.+|++.+.| ..+||+.+++...+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 578999999999999999999999977655443 3345556899999999 99999999999 999999987744333
Q ss_pred eeecCCCCcEEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCcee
Q 009022 350 LCDLPHKRVVNSAYFSPSG-----SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 424 (546)
Q Consensus 350 ~~~~~~~~~v~~~~~~p~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 424 (546)
.....-...+..+.|+.+. .+++....-+.|+.|++...+-..-.+. .....+.....+++.+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~---~~~~~~~~siSsl~VS~d------- 292 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL---RKKIKRFKSISSLAVSDD------- 292 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch---hhhhhccCcceeEEEcCC-------
Confidence 3323344456677887766 3333444457788888765432110000 001111112235555665
Q ss_pred EEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 425 VIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 425 ~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
|++++ -|+.+|.|-|++..+.++++.+...|...|+.+ .|+|+.+++++-+ |..+.|..+.-
T Consensus 293 --Gkf~A---lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-tF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 --GKFLA---LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-TFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --CcEEE---EeccCCcEEEEEeceeeeeEeehhhheeeeeeE-EEcCCcCcccccccCCceeEEEEee
Confidence 99999 789999999999999999888887787888888 9999999999977 88888887654
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=132.34 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=127.1
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg 288 (546)
.+|.+.|+++.|+.+ |.+|++|+.|-.+.|||.-..+.+..+.... ...|.++.|-| +.+.+++|..|.
T Consensus 47 ~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgH--------taNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGH--------TANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred ccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeeccc--------ccceeEEeeeccCCCeEEEeccCcc
Confidence 789999999999999 9999999999999999998777776654321 12599999988 567899999999
Q ss_pred cEEEEeCCCCCCC-------cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCce-------e-eec
Q 009022 289 FLYLVDARTNSRS-------GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS-------L-CDL 353 (546)
Q Consensus 289 ~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~-~~~ 353 (546)
.|++||+...+.. .+.....-|...|..|+..|..++.+.+++.||+|+-||++....-.. + ...
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999852211 111122334457888999995569999999999999999986322111 1 011
Q ss_pred CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 009022 354 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 354 ~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~ 386 (546)
+.--...|+.++| +..+|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 2234567899999 67789999999999999964
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=2.2e-15 Score=135.24 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=158.5
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 348 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 348 (546)
.+.+.++.+|++++.|+..|.|..+|..+++....+.. ...|.++.|.. +.++||++ ....++|||- .+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~----~Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLH-NEQFFAVA-QKKYVYVYDN----NGT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhc-chHHHHhh-hhceEEEecC----CCc
Confidence 67788999999999999999999999999876543311 22688999988 77888776 5788999995 355
Q ss_pred eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee
Q 009022 349 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 428 (546)
Q Consensus 349 ~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~ 428 (546)
.+..+.....|..+.|-|..-+|++++..|.++.-|+.+|+++...+.-. +.. ..+.-+|. +.
T Consensus 202 ElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~------G~~--~vm~qNP~---------Na 264 (545)
T KOG1272|consen 202 ELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA------GRT--DVMKQNPY---------NA 264 (545)
T ss_pred EEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC------Ccc--chhhcCCc---------cc
Confidence 56555555679999999999999999999999999999999865433111 111 12233343 11
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeec
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~ 501 (546)
.+ ..|...|+|.+|.....+++..+..|. +.+.+| ++.++|+|+||++ |..|+|||++.-..+.++..
T Consensus 265 Vi---h~GhsnGtVSlWSP~skePLvKiLcH~-g~V~si-Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 265 VI---HLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSI-AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred eE---EEcCCCceEEecCCCCcchHHHHHhcC-CCcceE-EECCCCcEEeecccccceeEeeeccccccceeec
Confidence 22 268899999999999999999998887 888888 9999999999999 99999999998877766655
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.5e-12 Score=120.34 Aligned_cols=285 Identities=16% Similarity=0.181 Sum_probs=179.9
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe-----C-----CCeEE
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-----S-----DGTVS 240 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~-----dg~i~ 240 (546)
..++..+++++| +++|.+. +..++|++......+.... .. .+.++.|+|- +.+|.+-- . .-.+.
T Consensus 35 ~~~~v~~~S~~G-~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNG-RLFAYSD-NQVVKVFEIATLKVVLCVE--LK-KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCC-cEEEEEc-CCeEEEEEccCCcEEEEec--cc-eeeeeeeccc-ccccccccccccccCCCCCCCcee
Confidence 347788899999 6666655 5689999998876444442 22 7899999999 88877631 1 23477
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
+|++.++.....+....+ .-+++.|+.+..+.+- -..+.+++|++...+.... .++ ...|+.+.++
T Consensus 109 v~~vet~~~~s~~q~k~Q---------~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~--kl~--~~~i~~f~lS 174 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQ---------NGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH--KLS--VSGITMLSLS 174 (566)
T ss_pred eeeeccceehhheehhhh---------cCcccccccchhhhhh-hhcceEEEEecCCccceee--eee--ccceeeEEec
Confidence 999998655444433222 1246777777654332 2346788888876433222 222 2356677777
Q ss_pred CC-CCCEEEE-----EeCCCeEEEEECCCCC-------------------------------------------------
Q 009022 321 PI-QPELLLS-----CGNDHFARIWDIRRLE------------------------------------------------- 345 (546)
Q Consensus 321 p~-~~~~l~~-----~~~dg~i~iwd~~~~~------------------------------------------------- 345 (546)
|. ....+|+ .|.-+.|+||-+....
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 63 2223332 2233456665443100
Q ss_pred -----CCceeeecCCCCcEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCC
Q 009022 346 -----AGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 418 (546)
Q Consensus 346 -----~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (546)
.......+.-.++|.++.|+|+++.|+++- .-.++.|||++-.- +....-+ ..-++.|+|.
T Consensus 255 ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------v~df~eg---pRN~~~fnp~- 322 (566)
T KOG2315|consen 255 LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------VFDFPEG---PRNTAFFNPH- 322 (566)
T ss_pred EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------eEeCCCC---CccceEECCC-
Confidence 001111223468999999999998776653 35679999986321 1111101 1126889998
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-------CCcEEEEcCC
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRPK 491 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-------dg~i~vwd~~ 491 (546)
|++++...-|.-.|.|.|||+.+.+++..+.... +++..|+|||++++|++ |+.++||+.
T Consensus 323 --------g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy- 389 (566)
T KOG2315|consen 323 --------GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY- 389 (566)
T ss_pred --------CCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence 7777766688889999999999988888876554 23348999999999864 589999998
Q ss_pred CCCccceee
Q 009022 492 EKSELVEQK 500 (546)
Q Consensus 492 ~~~~~~~~~ 500 (546)
+|.++....
T Consensus 390 tG~~l~~~~ 398 (566)
T KOG2315|consen 390 TGSLLHEKM 398 (566)
T ss_pred cCceeehhh
Confidence 455554433
No 221
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-13 Score=117.56 Aligned_cols=216 Identities=17% Similarity=0.193 Sum_probs=147.8
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce----eEEecccC------------CCceEEEEEecCC-CCEEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIH------------SCIVNNIRFNPTN-DGTVY 231 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~-~~~l~ 231 (546)
-.+-|.++.|...| .+||||..+|.|.++.-..... .....+.| ...|..+.|.+++ ...++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34578999999999 6899999999999997654322 11111233 3468899998773 45677
Q ss_pred EEeCCCeEEEEECCCCceee---------------eeec------------CCCCCCCCCcccceEEEEecCCCCEEEEE
Q 009022 232 AASSDGTVSCTDLETGLALS---------------LMNV------------NPNGWHGPRTWRMLYGMDINPEKGVVLVA 284 (546)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~---------------~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 284 (546)
..+.|.+|++|-+....... .++. .+.......+...|++|+++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88889999999886432211 0000 01112233444569999999999988887
Q ss_pred eCCCcEEEEeCCCCCCCcceEEeecCC-----CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC----Cceeeec--
Q 009022 285 DNFGFLYLVDARTNSRSGEAILIHRKG-----SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDL-- 353 (546)
Q Consensus 285 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~-- 353 (546)
. |-.|.+|++.-......+.-...+. .-|++..|+|...++|+-.+..|+|++-|+|.... .+.+...
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5 5789999987655544443333322 35889999998889999999999999999984221 0111000
Q ss_pred --------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 354 --------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 354 --------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+--..|..+.|+++|+|+++-. --+|++||+..
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm 302 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM 302 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence 1234688899999999999864 36899999853
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=1e-12 Score=112.87 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=136.2
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC-CCceeeeeecCCCCCCCCCcccceEE
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYG 271 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (546)
..|.|||=....++..+. ...+|.+|.+.++ .|++.-. +.|+||... ..+.+..+.....+ ..+.+
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl~-~~I~VytF~~n~k~l~~~et~~NP-------kGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNP-------KGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEec-CeEEEEEcCCChhheeeeecccCC-------CceEe
Confidence 579999955555555553 7889999999865 6666554 689999987 45555555443221 12555
Q ss_pred EEecCCCCEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCCCce
Q 009022 272 MDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF-ARIWDIRRLEAGSS 349 (546)
Q Consensus 272 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 349 (546)
++-..+..+||. |-.-|.|.+.|+...... .......|...|.|++.+- +|..+|++|..|+ |||||..++.....
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 555555556665 456699999999876552 2335567777999999999 9999999999997 79999988776666
Q ss_pred eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 350 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 350 ~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
++.-.....|.+|+|+|+..+|+++|.-|+|+||.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 5544566789999999999999999999999999997543
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.9e-13 Score=132.24 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=131.1
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCC---CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe-CCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i 239 (546)
+.+..|...|.+.+|+|+| +.|+.++.+ ..|++||+.++...... ...+....++|+|+ ++.|+.++ .+|.+
T Consensus 197 ~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPD-G~~La~~~~~~g~~ 272 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPD-GSRLAFASSKDGVL 272 (429)
T ss_pred eEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCC-CCEEEEEEecCCcE
Confidence 5567788899999999999 456665433 47999999876543322 12223457899999 87777654 67765
Q ss_pred EE--EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 240 SC--TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 240 ~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
.| ||+.++.... +..+. ..+....|+|+|+.|+.++ .+|...+|++.......... .+.. ..
T Consensus 273 ~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~ 337 (429)
T PRK01742 273 NIYVMGANGGTPSQ-LTSGA---------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG--YS 337 (429)
T ss_pred EEEEEECCCCCeEe-eccCC---------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--CC
Confidence 55 5666655432 22211 1367789999999877654 56778888765432222111 2222 45
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
..|+| +++.|+.++.++ +.+||+.++... .+. .. ....++.|+|+|++|+.++.++.+.+|.+.
T Consensus 338 ~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~-~lt--~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 338 AQISA-DGKTLVMINGDN-VVKQDLTSGSTE-VLS--ST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred ccCCC-CCCEEEEEcCCC-EEEEECCCCCeE-Eec--CC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 78999 999988887655 566998765431 111 11 123568899999999999999988888763
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=1.5e-13 Score=126.01 Aligned_cols=174 Identities=22% Similarity=0.235 Sum_probs=127.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE--eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-------
Q 009022 275 NPEKGVVLVADNFGFLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE------- 345 (546)
Q Consensus 275 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~------- 345 (546)
.+.+--+++|-..|.|.++|....... +++. .......|+++.|-|.+...++++-.+|.+++||....-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 456778999999999999998763221 1111 111224899999999788889999999999999763110
Q ss_pred ----CCceee---------------ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 346 ----AGSSLC---------------DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 346 ----~~~~~~---------------~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
....+. ..--.+.|+.++|+|+|++||+.+.||.+||||..+.+++...+ .-|.
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----SYFG-- 333 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-----SYFG-- 333 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----hhcc--
Confidence 000000 00124578899999999999999999999999998876643211 1111
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeec
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 471 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s 471 (546)
..++++|+|+ |+|++ +|+.|--|.||.+...+.++.-++|. ..|..| +|.
T Consensus 334 -GLLCvcWSPD---------GKyIv---tGGEDDLVtVwSf~erRVVARGqGHk-SWVs~V-aFD 383 (636)
T KOG2394|consen 334 -GLLCVCWSPD---------GKYIV---TGGEDDLVTVWSFEERRVVARGQGHK-SWVSVV-AFD 383 (636)
T ss_pred -ceEEEEEcCC---------ccEEE---ecCCcceEEEEEeccceEEEeccccc-cceeeE-eec
Confidence 2259999999 99999 99999999999999999988877776 566665 676
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4e-12 Score=123.86 Aligned_cols=237 Identities=12% Similarity=0.114 Sum_probs=148.0
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|.+||.......... .+...+...+|+|+ ++.|+..+. +..|++|++.+++......... ..
T Consensus 179 ~~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------~~ 245 (429)
T PRK03629 179 YELRVSDYDGYNQFVVH--RSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------HN 245 (429)
T ss_pred eeEEEEcCCCCCCEEee--cCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC----------Cc
Confidence 37999998865544433 36678999999999 777776542 3579999998886543322211 13
Q ss_pred EEEEecCCCCEEEEE-eCCC--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC-C--eEEEEECCC
Q 009022 270 YGMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-H--FARIWDIRR 343 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~ 343 (546)
..+.|+|+|+.|+.. +.+| .|++||+.++... ........+....|+| +++.|+..+.. + .|+++++..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC
Confidence 457899999988865 4444 5899999876432 2222333678899999 88888766653 4 455556654
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 420 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 420 (546)
... ..+. ..........|+|+|++|+..+.+ ..|.+||+.++.... +. ... ......|+|+
T Consensus 321 g~~-~~lt--~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-----Lt-~~~----~~~~p~~SpD--- 384 (429)
T PRK03629 321 GAP-QRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----LT-DTF----LDETPSIAPN--- 384 (429)
T ss_pred CCe-EEee--cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-----eC-CCC----CCCCceECCC---
Confidence 322 2221 233345678999999999876653 358889998775311 11 111 1124678888
Q ss_pred CceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 421 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 421 ~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
|++++....-.....+.++++ +|.....+.++. ..+... +|+|
T Consensus 385 ------G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~-~~~~~p-~Wsp 427 (429)
T PRK03629 385 ------GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD-GQVKFP-AWSP 427 (429)
T ss_pred ------CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC-CCcCCc-ccCC
Confidence 655552211112234777887 566566666544 445555 7887
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=126.31 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=110.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC--------------c--------------eeEEecccCCCceEEEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------------S--------------EKIVYGNIHSCIVNNIR 221 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------~--------------~~~~~~~~~~~~v~~~~ 221 (546)
+..|+|+.|-|.++.+++.+-.+|.++++|.... . .+..+ ..-.+.|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee-Eecccccccee
Confidence 4789999999988788888889999999976311 0 00001 11345788999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009022 222 FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 301 (546)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 301 (546)
|+|+ +.+||+.+.||.++|||..+...+..++.- .....|++|+|||++|++|+.|..|.||.+...+.+
T Consensus 298 FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 298 FSPD-GKYLATVSQDGFLRIFDFDTQELLGVMKSY---------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred EcCC-CceEEEEecCceEEEeeccHHHHHHHHHhh---------ccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 9998 999999999999999999988776555322 225899999999999999999999999999876543
Q ss_pred cceEEeecCCCcEEEEEECC
Q 009022 302 GEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~p 321 (546)
...++|..+|..++|.|
T Consensus 368 ---ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ---ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---EeccccccceeeEeecc
Confidence 36788889999999987
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=5.8e-13 Score=115.50 Aligned_cols=258 Identities=19% Similarity=0.264 Sum_probs=185.8
Q ss_pred CCceeeeccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEE
Q 009022 98 MKPCFLCKMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCL 176 (546)
Q Consensus 98 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 176 (546)
.+|+++..+.||.. +......+....+++.+.+.+.++|......+. .+. +...-..+++++
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~---wps--------------I~~~mP~~~~~~ 74 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY---WPS--------------IYHYMPSPCSAM 74 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc---Cch--------------hhhhCCCCceEe
Confidence 46778888999994 445555566789999999999999964433322 221 122234589999
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCC----CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeee
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYK----VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 252 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (546)
.+.+.. +.|+.|-..|++.-+.+.. ...+... ..|...|..+.|+-. ...+++.+.|..+.---.+.+..+..
T Consensus 75 ~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 75 EYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred eeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccc
Confidence 999988 7899999999999887653 2223333 679999999999987 88999999998776555566555443
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
+..... ..++.+.-. +..+|...|.|....+..... ..+....+|.+.+++++|.| ....|.+|..
T Consensus 152 Y~~~~~----------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~ 217 (404)
T KOG1409|consen 152 YNFETP----------ASALQFDAL--YAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGAS 217 (404)
T ss_pred eEeecc----------CCCCceeeE--EEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccc
Confidence 322211 111112111 666777777777766654332 33456677888999999999 8899999999
Q ss_pred CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 333 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
|..+.+||+--.+ .......+|...|..+...+--+.+++++.||.|.+|+++..+.
T Consensus 218 d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 218 DHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cCceEEEeccCCc-ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999996433 33444458999999999888888999999999999999976543
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.5e-12 Score=123.53 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=131.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEE-eCCC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGD---KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-SSDG-- 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg-- 237 (546)
+.+..+...+.+.+|+|+|. .|+..+ .+..|.+|++.+++..... .....+..+.|+|+ ++.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD-G~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD-GSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC-CCEEEEEEcCCCCc
Confidence 44556777899999999995 555432 2457999999877543332 23344567899999 7766654 4455
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-C--cEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.|++||+.++......... ..+....|+|+|+.|+..+.. + .|+++++.++... .........
T Consensus 268 ~I~~~d~~tg~~~~lt~~~----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGR----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEEECCCCCEEEccCCC----------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 5899999887654432211 135678999999988877654 3 4555576654321 222223345
Q ss_pred EEEEECCCCCCEEEEEeCC---CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc---EEEEECC
Q 009022 315 VGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR---LRIWDSI 386 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~---i~vwd~~ 386 (546)
....|+| ++.+|+..+.+ ..|++||+.+... ..+. .........|+|+|++|+.++.++. +.++++.
T Consensus 334 ~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 334 QDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred cCEEECC-CCCEEEEEEccCCCceEEEEECCCCCe-EEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 6789999 88888776543 3588899876442 2221 1222346789999999999988765 6677774
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.8e-12 Score=109.72 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=131.6
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE-------------EecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-------------VYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
....|+||+|-|.+..-|+.|+.. -|.||......... ....+| .+|+++.|+++ +..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeeccc
Confidence 345799999999876778888875 59999875321111 111345 68999999999 888888876
Q ss_pred -CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 236 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 236 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
+..|.|||..++..+........ .+.-+.|+|++.+|++++-|+..++|......... ...-..+.|
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glg---------g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~lgsgrv 283 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLG---------GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWILGSGRV 283 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCC---------ceeeEEEcCCCCEEEEecccceeeeehhcccceec---ceeccCCce
Confidence 57899999999987766533322 37889999999999999999999999665432222 222233389
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc------------eeeec------C----CCCcEEEEEEeCCCCEEE
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS------------SLCDL------P----HKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~------~----~~~~v~~~~~~p~~~~l~ 372 (546)
...+|+| .|.+|+... .|.-++|.+....... .+..+ . --+.+.+++|.|.|.+||
T Consensus 284 qtacWsp-cGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 284 QTACWSP-CGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeecC-CCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 9999999 777665544 2334455442211100 01011 0 135688999999999999
Q ss_pred EEeCCC
Q 009022 373 TTSQDN 378 (546)
Q Consensus 373 s~s~dg 378 (546)
+.-..+
T Consensus 362 v~fKg~ 367 (445)
T KOG2139|consen 362 VIFKGQ 367 (445)
T ss_pred EEEcCC
Confidence 875543
No 230
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9.3e-12 Score=114.86 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=175.9
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-----------CCeEEE
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-----------DGTVSC 241 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~i 241 (546)
=+-+.|||.| .||+|--.-| |.+|--.+-.....+. |. .|.-+.|||. .+||++-+. ...|+|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCc-cceEEEecCCccccCcccCCCceEEE
Confidence 3568999999 7999987765 9999877666666653 65 4788999999 999999754 257999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
||+.+|...+.+.....+. . ...-+.||.|++++|.-.. ..|.||+......... .... -..|..+.|+|
T Consensus 287 WDI~tG~lkrsF~~~~~~~---~---~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Kslk--i~gIr~FswsP 356 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPY---L---KWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSLK--ISGIRDFSWSP 356 (698)
T ss_pred EEccccchhcceeccCCCc---c---ccceEEeccCCceeEEecc-ceEEEEecCceeeecc-cccC--CccccCcccCC
Confidence 9999999988887642221 1 1334679999999998776 5677887655322110 0111 12456666666
Q ss_pred CCCCEEEEEeCC---------------------------------------------------------CeEEEEECCCC
Q 009022 322 IQPELLLSCGND---------------------------------------------------------HFARIWDIRRL 344 (546)
Q Consensus 322 ~~~~~l~~~~~d---------------------------------------------------------g~i~iwd~~~~ 344 (546)
.+++||-=... ..+.|+.++..
T Consensus 357 -~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 357 -TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred -CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 45544432110 01112222211
Q ss_pred CCCceeeecCCCCcEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
.. .+........|...+|-|.|+.+++-+. ..++.+|-+.+.-. .+.....+.. .....+.|+|.
T Consensus 436 dI--pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk-~~~N~vfwsPk---- 503 (698)
T KOG2314|consen 436 DI--PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK-KFANTVFWSPK---- 503 (698)
T ss_pred CC--CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc-cccceEEEcCC----
Confidence 11 1111234567888999999998877654 35788998874110 0001111111 22347899998
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-------CCcEEEEcCCC
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRPKE 492 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-------dg~i~vwd~~~ 492 (546)
|++++...-++..|.+.++|+.-..+..+- .......+.+ .|.|.|+|++|++ |..-+||+.+.
T Consensus 504 -----G~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh~~at~v-eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 504 -----GRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEHFAATEV-EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred -----CcEEEEEEecccccceEEEecchhhhhhcc-Cccccccccc-eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 666665555568899999999753332222 2222445555 8999999999975 34556777653
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.9e-12 Score=122.46 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=145.9
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|.+||........ + ..+...+.+.+|+|+ ++.|+.++. ...|++|++.++......... . ..
T Consensus 184 ~~l~i~D~~g~~~~~-l-t~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g---------~~ 250 (433)
T PRK04922 184 YALQVADSDGYNPQT-I-LRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRELVASFR-G---------IN 250 (433)
T ss_pred EEEEEECCCCCCceE-e-ecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-C---------Cc
Confidence 469999986544333 3 346778999999999 888887764 346999999888654332111 1 24
Q ss_pred EEEEecCCCCEEEE-EeCCC--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CCe--EEEEECCC
Q 009022 270 YGMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHF--ARIWDIRR 343 (546)
Q Consensus 270 ~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~--i~iwd~~~ 343 (546)
.++.|+|+|+.|+. .+.+| .|++||+.++... ....+......++|+| +++.|+..+. +|. |+++++.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 46789999998765 34455 6999999876532 2222333456789999 8888877663 444 66677654
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 420 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 420 (546)
... ..+.. +......++|+|+|++|+..+.++ .|.+||+.+++... +. .. . ......|+|+
T Consensus 326 g~~-~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-----Lt-~~--~--~~~~p~~spd--- 389 (433)
T PRK04922 326 GSA-ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-----LT-PG--S--LDESPSFAPN--- 389 (433)
T ss_pred CCe-EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-----CC-CC--C--CCCCceECCC---
Confidence 332 22221 223345789999999998765443 59999998765421 11 11 0 1124578988
Q ss_pred CceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 421 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 421 ~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
|++++........+.|.++++. |.....+..+. +.+... +|+|
T Consensus 390 ------G~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~-g~~~~p-~wsp 432 (433)
T PRK04922 390 ------GSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD-GEVREP-AWSP 432 (433)
T ss_pred ------CCEEEEEEecCCceEEEEEECC-CCceEEcccCC-CCCCCC-ccCC
Confidence 5544422222334568888884 44444443332 334444 6776
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.1e-11 Score=121.74 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=135.7
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEc---CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCCe-
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGD---KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGT- 238 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~- 238 (546)
+.+..|...|.+.+|+|+|. .|+..+ .+..|.+||+.++..... ..+.+.+...+|+|+ ++.| ++.+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPD-G~~la~~~~~~g~~ 270 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPD-GRKVVMSLSQGGNT 270 (435)
T ss_pred EEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEe--ecCCCcccCcEECCC-CCEEEEEEecCCCc
Confidence 55677888999999999995 555543 246899999988765433 346667788999999 6655 45565554
Q ss_pred -EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 239 -VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 239 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
|++||+.++..... ..... ......|+|+|+.|+..+. .| .|+++|+..+... ........+
T Consensus 271 ~Iy~~d~~~~~~~~L-t~~~~---------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~~ 336 (435)
T PRK05137 271 DIYTMDLRSGTTTRL-TDSPA---------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGRY 336 (435)
T ss_pred eEEEEECCCCceEEc-cCCCC---------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCcc
Confidence 77789887765432 21111 2456889999998887763 33 6888887664332 222223356
Q ss_pred EEEEECCCCCCEEEEEeCC---CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC------CcEEEEEC
Q 009022 315 VGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD------NRLRIWDS 385 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d------g~i~vwd~ 385 (546)
....|+| +++.|+..+.+ ..|.+||+..... ..+.....+..+.|+|+|+.|+..+.+ ..|.++++
T Consensus 337 ~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE----RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce----EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 7789999 88888876543 3688888753321 122223346788999999988776543 25777787
Q ss_pred CCCC
Q 009022 386 IFGN 389 (546)
Q Consensus 386 ~~~~ 389 (546)
..+.
T Consensus 412 ~g~~ 415 (435)
T PRK05137 412 TGRN 415 (435)
T ss_pred CCCc
Confidence 6543
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1e-11 Score=121.67 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=132.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDG-- 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg-- 237 (546)
+.+..|...+.+.+|+|+| +.|+..+. ...|++|++.++...... .+.+...++.|+|+ ++.| ++.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpD-G~~l~~~~s~~g~~ 272 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPD-GRRLALTLSRDGNP 272 (433)
T ss_pred eEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCC-CCEEEEEEeCCCCc
Confidence 4566778889999999999 45665543 346999999877654332 24445568899999 6655 4555555
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCc--EEEEeCCCCCCCcceEEeecCCCcE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGF--LYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.|++||+.++..... ..+.. .....+|+|+++.|+.++. .|. |+++++.++... .+.. .+...
T Consensus 273 ~Iy~~d~~~g~~~~l-t~~~~---------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt~--~g~~~ 338 (433)
T PRK04922 273 EIYVMDLGSRQLTRL-TNHFG---------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLTF--QGNYN 338 (433)
T ss_pred eEEEEECCCCCeEEC-ccCCC---------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eeec--CCCCc
Confidence 599999988765432 21111 2456789999998887763 444 777777665421 1122 22245
Q ss_pred EEEEECCCCCCEEEEEeCCC---eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECCC
Q 009022 315 VGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIF 387 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~ 387 (546)
..++|+| +++.|+..+.++ .|.+||+.+.... .+.+......+.|+|+|++|+..+.+ +.|.++++..
T Consensus 339 ~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~----~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 339 ARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR----TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred cCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE----ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 5789999 888888765433 6999998754431 22233345567999999988877653 3577777743
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=7.1e-12 Score=107.25 Aligned_cols=149 Identities=15% Similarity=0.287 Sum_probs=101.6
Q ss_pred EEEEEecCCCCEEEEEeC----------CCeEEEEECCC-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE--
Q 009022 218 NNIRFNPTNDGTVYAASS----------DGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-- 284 (546)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-- 284 (546)
..+.|+|. |.+|+.-.. -+...+|.++. +.....+..... .+|.+++|+|+++.|++.
T Consensus 9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--------~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--------GPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--------CceEEEEECcCCCEEEEEEc
Confidence 45788888 655554332 13344554422 223333333222 149999999999987665
Q ss_pred eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCCCceeeecCCCCcEEE
Q 009022 285 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNS 361 (546)
Q Consensus 285 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 361 (546)
..++.|.+||++. . ...... ...+..+.|+| +|++|++++. .|.|.+||+++.+ .+....|. .++.
T Consensus 80 ~~~~~v~lyd~~~-~---~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~~~~~-~~t~ 148 (194)
T PF08662_consen 80 SMPAKVTLYDVKG-K---KIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKK---KISTFEHS-DATD 148 (194)
T ss_pred cCCcccEEEcCcc-c---EeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCE---EeeccccC-cEEE
Confidence 3567999999962 2 122222 33788999999 9999999874 4679999997433 34444454 4789
Q ss_pred EEEeCCCCEEEEEeC------CCcEEEEECC
Q 009022 362 AYFSPSGSKILTTSQ------DNRLRIWDSI 386 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~------dg~i~vwd~~ 386 (546)
++|+|+|++|++++. |+.++||+..
T Consensus 149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 149 VEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999999999875 7889999985
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=5.7e-12 Score=107.82 Aligned_cols=150 Identities=13% Similarity=0.238 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcEEEEEcC---------CCcEEEEeCCCCc-eeEEecccCCCceEEEEEecCCCCEEEEE--eCCCeEEE
Q 009022 174 TCLEFHPTNNHILLSGDK---------KGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAA--SSDGTVSC 241 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~i 241 (546)
..+.|+|+|+.+++.... -+...||.+.... ....+.....++|.+++|+|+ ++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~-g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN-GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC-CCEEEEEEccCCcccEE
Confidence 467899999766655541 2346666663322 223332234567999999999 7766544 45679999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
||++ ++.+..+. .. .++.+.|+|+|++|++++. .|.|.+||+++.+.+. ...+. .++.++
T Consensus 88 yd~~-~~~i~~~~--~~---------~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~~-~~t~~~ 150 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQ---------PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEHS-DATDVE 150 (194)
T ss_pred EcCc-ccEeEeec--CC---------CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----ccccC-cEEEEE
Confidence 9996 44444442 11 4788999999999999864 4679999999655432 22333 578999
Q ss_pred ECCCCCCEEEEEeC------CCeEEEEECC
Q 009022 319 CNPIQPELLLSCGN------DHFARIWDIR 342 (546)
Q Consensus 319 ~~p~~~~~l~~~~~------dg~i~iwd~~ 342 (546)
|+| +|++|+++.. |+.++||+..
T Consensus 151 WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 151 WSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 999 9999998874 6788999974
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=4.1e-11 Score=113.16 Aligned_cols=268 Identities=15% Similarity=0.116 Sum_probs=158.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe-CCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iw 242 (546)
..+......-..+.|+|+| +++++++.||.|.++|+.+.+....+. -.....+++++++ +++++++. ..+.+.++
T Consensus 30 ~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~--~G~~~~~i~~s~D-G~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIK--VGGNPRGIAVSPD-GKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T-TTEEEEEEEETTEEEEE
T ss_pred EEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEe--cCCCcceEEEcCC-CCEEEEEecCCCceeEe
Confidence 4454443333457899999 678888899999999999999888875 3445688999999 88877665 68999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|..+.+.+..+......... ....+.++..++....+++. -..+.|.+.|......... .............|.|
T Consensus 106 D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~--~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDG--PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV--TTIKVGRFPHDGGFDP 181 (369)
T ss_dssp ETTT--EEEEEE--EE-TTT--S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE--EEEE--TTEEEEEE-T
T ss_pred ccccccceeecccccccccc--cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce--eeecccccccccccCc
Confidence 99999998887654322111 22247788888888866555 4558999999877643321 2222334678899999
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCCCCCcee--------------------------------------------------
Q 009022 322 IQPELLLSC-GNDHFARIWDIRRLEAGSSL-------------------------------------------------- 350 (546)
Q Consensus 322 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-------------------------------------------------- 350 (546)
++++++++ .....|-++|..+.+....+
T Consensus 182 -dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 182 -DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp -TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred -ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 88876664 45667778877643221100
Q ss_pred --eecCCCCcEEEEEEeCCCCEEEEE----eCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCcee
Q 009022 351 --CDLPHKRVVNSAYFSPSGSKILTT----SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 424 (546)
Q Consensus 351 --~~~~~~~~v~~~~~~p~~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 424 (546)
..+...+.-.-+..||+++++.+. ...+.|.++|..+.+... .........++.+.|+++
T Consensus 261 vv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~-------~i~~~~~~~~~h~ef~~d------- 326 (369)
T PF02239_consen 261 VVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK-------TITPGPGKRVVHMEFNPD------- 326 (369)
T ss_dssp EEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE--------HHHHHT--EEEEEE-TT-------
T ss_pred EEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE-------EEeccCCCcEeccEECCC-------
Confidence 000001111346778999999988 445889999998764321 111112222567889998
Q ss_pred EEeeeeeecCCCCcCcceEEEECCchhhhHhhc
Q 009022 425 VIGRYISENYNGAALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 425 ~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 457 (546)
|+++-.. .-..++.|.|||..|.+++..+.
T Consensus 327 --G~~v~vS-~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 327 --GKEVWVS-VWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --SSEEEEE-EE--TTEEEEEETTTTEEEEEEE
T ss_pred --CCEEEEE-EecCCCEEEEEECCCcEEEEEEE
Confidence 4322210 12333489999999999888775
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.3e-11 Score=118.72 Aligned_cols=238 Identities=13% Similarity=0.117 Sum_probs=140.5
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|.+||....... .+ ..+...+.+.+|+|+ ++.|+..+.. ..|++||+.+++........ . ..
T Consensus 176 ~~L~~~D~dG~~~~-~l-~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g---------~~ 242 (427)
T PRK02889 176 YQLQISDADGQNAQ-SA-LSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-G---------SN 242 (427)
T ss_pred cEEEEECCCCCCce-Ee-ccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-C---------Cc
Confidence 46777777543333 33 347778999999999 8888776642 45999999988764432121 1 25
Q ss_pred EEEEecCCCCEEEE-EeCCCcEEEE--eCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CCeEEEEECC--C
Q 009022 270 YGMDINPEKGVVLV-ADNFGFLYLV--DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIR--R 343 (546)
Q Consensus 270 ~~~~~~~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~i~iwd~~--~ 343 (546)
.+..|+|+|+.|+. .+.+|...+| |+..+.. .....+........|+| +++.|+..+. .|...||.+. .
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL----RRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCc----EECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC
Confidence 57889999998875 5667765555 5544331 12222333456788999 8887776553 4566666543 2
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 420 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 420 (546)
... ..+. . .........|+|+|++|+..+.++ .|.+||+.+++... + .... ......|+|+
T Consensus 318 g~~-~~lt-~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~----l-t~~~-----~~~~p~~spd--- 381 (427)
T PRK02889 318 GAA-QRVT-F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA----L-TDTT-----RDESPSFAPN--- 381 (427)
T ss_pred Cce-EEEe-c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE----c-cCCC-----CccCceECCC---
Confidence 221 1222 1 223344678999999998877654 59999998775321 1 1111 1125689998
Q ss_pred CceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 421 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 421 ~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
|++++..........+.+.++ +|.....+..+. +.+... +|+|-
T Consensus 382 ------g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~-g~~~~p-~wsp~ 425 (427)
T PRK02889 382 ------GRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG-GDVREP-SWGPF 425 (427)
T ss_pred ------CCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC-CCCCCC-ccCCC
Confidence 544442211122244666666 455554454332 334444 68773
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.4e-11 Score=115.08 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=145.2
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|.+||......... ..|...+.+.+|+|+ ++.|+..+. +..|++||+.++........ .. .+
T Consensus 182 ~~l~~~d~dg~~~~~l--t~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g---------~~ 248 (435)
T PRK05137 182 KRLAIMDQDGANVRYL--TDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG---------MT 248 (435)
T ss_pred eEEEEECCCCCCcEEE--ecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC---------cc
Confidence 4788999865544333 357789999999999 888777653 46899999998875433211 11 35
Q ss_pred EEEEecCCCCEEEE-EeCCC--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECCC
Q 009022 270 YGMDINPEKGVVLV-ADNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRR 343 (546)
Q Consensus 270 ~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~ 343 (546)
...+|+|+|+.|+. .+.++ .|++||+.++... ....+........|+| ++..|+..+. +| .|++||+..
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC
Confidence 67889999998764 44444 4888898875432 2223333566789999 8888877663 33 688888764
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 420 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 420 (546)
... ..+. .+...+..+.|+|+|++|+..+.+ ..|.+|++..+... .. .... ......|+|+
T Consensus 324 ~~~-~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-----~l-t~~~----~~~~p~~spD--- 387 (435)
T PRK05137 324 SNP-RRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-----IL-TSGF----LVEGPTWAPN--- 387 (435)
T ss_pred CCe-EEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-----ec-cCCC----CCCCCeECCC---
Confidence 332 2222 234456778999999999887653 35888887554321 11 1111 1235789998
Q ss_pred CceeEEeeeeeecCC-CCcC--cceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 421 ESLAVIGRYISENYN-GAAL--HPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 421 ~~~~~~g~~~~~~~~-g~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
|++++.... +... ..|.++++..+.. ..+... ..+... +|+|
T Consensus 388 ------G~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~--~~~~~p-~Wsp 432 (435)
T PRK05137 388 ------GRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP--GDASDP-AWSP 432 (435)
T ss_pred ------CCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC--CCccCc-ccCC
Confidence 554442111 1111 4688888865543 333321 223333 6776
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=1.6e-10 Score=109.55 Aligned_cols=286 Identities=17% Similarity=0.251 Sum_probs=170.2
Q ss_pred EEEEcCC----CcEEEEeC--CCCceeEEecccCCCceEEEEEecCCCCEEEEEeC----CCeEEEEECCCC--ceeeee
Q 009022 186 LLSGDKK----GQVGVWDF--YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGTVSCTDLETG--LALSLM 253 (546)
Q Consensus 186 l~s~~~d----~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~ 253 (546)
++.|+.. +.|.+|.+ .++.........-......++++|+ +++|+++.. .+.|..|.+... .....-
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445544 68999888 3333222221223445677999999 888888776 578999988764 332222
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEee-----------cCCCcEEEEEECC
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIH-----------RKGSKVVGLHCNP 321 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~i~~~~~~p 321 (546)
.....+ .....++++|++++|+++. .+|.|.++++.....+....... .......++.++|
T Consensus 81 ~~~~~g-------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 81 SVPSGG-------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EEEESS-------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred eeccCC-------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 221111 1366799999999999986 58999999998743332221111 1234578999999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCCCC-cee--eecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECC--CCCCCCCC
Q 009022 322 IQPELLLSCG-NDHFARIWDIRRLEAG-SSL--CDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSI--FGNLDSPS 394 (546)
Q Consensus 322 ~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~--~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~--~~~~~~~~ 394 (546)
+++++++.. ....|++|++...... ... ...........+.|+|+++++++.. .++.|.+|++. .+.+..
T Consensus 154 -dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~-- 230 (345)
T PF10282_consen 154 -DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE-- 230 (345)
T ss_dssp -TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--
T ss_pred -CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--
Confidence 888777754 3457999999754311 111 1235566688999999999886655 47889999987 332211
Q ss_pred cceeec--cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC--chhh--hHhhcCCCCCccccee
Q 009022 395 REIVHS--HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--TGQL--VAEVMDPNITTISPVN 468 (546)
Q Consensus 395 ~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~--~~~~--~~~~~~~~~~~i~~v~ 468 (546)
...+.. ..+.....+..+..+|+ |+++.. +....+.|.+|++. +|++ +..+.... ..-..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispd---------g~~lyv--snr~~~sI~vf~~d~~~g~l~~~~~~~~~G-~~Pr~~- 297 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPD---------GRFLYV--SNRGSNSISVFDLDPATGTLTLVQTVPTGG-KFPRHF- 297 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TT---------SSEEEE--EECTTTEEEEEEECTTTTTEEEEEEEEESS-SSEEEE-
T ss_pred EEEeeeccccccccCCceeEEEecC---------CCEEEE--EeccCCEEEEEEEecCCCceEEEEEEeCCC-CCccEE-
Confidence 001111 11222223456778887 555542 23446789999983 3332 22222111 223445
Q ss_pred eecCCCcEEEEec--CCcEEEEcC--CCCCc
Q 009022 469 KLHPRDDVLASGS--SRSIFIWRP--KEKSE 495 (546)
Q Consensus 469 ~~s~~~~~l~sgs--dg~i~vwd~--~~~~~ 495 (546)
+++|+|++|+++. ++.|.+|++ .+|.+
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 7999999999877 689999976 45553
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=5.8e-12 Score=124.81 Aligned_cols=198 Identities=12% Similarity=0.108 Sum_probs=149.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 347 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 347 (546)
+....+......++.++.+..+.+||........+........ ....-+..++ +.-++++|+.-+.|.+|+.... .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d--n 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED--N 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc--C
Confidence 3334455677889999999999999998765544321111110 0122233455 6679999999999999999732 2
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEe
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIG 427 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g 427 (546)
......+|.+.|.++.|+.+|.++++.|.|.++++|++.+++... ...+.+...++.+.+.|.
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n---------- 229 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN---------- 229 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc----------
Confidence 233456999999999999999999999999999999999887643 455666666777888774
Q ss_pred eeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 428 RYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 428 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
.+. +++.|.+.++|.. .++.+..+.+|....+..+ +.+++...++|++ |+.+++|++..
T Consensus 230 -~i~---t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~-~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RII---TVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKI-AVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eeE---EeccceEEEEEec-ccceehhhhhhhhcceeEE-EEcCCceEEEeeccCcchhhhhhhc
Confidence 233 7889999999965 4555568888988889988 8899999999999 99999999754
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=5.8e-11 Score=101.14 Aligned_cols=276 Identities=15% Similarity=0.143 Sum_probs=171.8
Q ss_pred CCcEEEEeCCCCceeE--EecccCCCceEEEEEec--CCCC-EEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcc
Q 009022 192 KGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNP--TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTW 266 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~--~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 266 (546)
-|.+.+|++...+... .+.......+..+.|.- .++. .++-+-..|.|.++..........+..- ......
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----s~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----SSKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----chhhhh
Confidence 4678888887654333 22233455677777763 3244 5566677899999977644433333211 111111
Q ss_pred c-ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Q 009022 267 R-MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 267 ~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 345 (546)
. ...++.|++.+..++++..+|.+.+.+...... .+......|...+....|+..+++++.+|+.|+.+..||+|.++
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeee-eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 1 256788999999999999999999665544322 22224455666788888888788999999999999999998433
Q ss_pred CCceee-ecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCC-CCCCCCCcceeeccCCcccCCceeEEecCCCCCCc
Q 009022 346 AGSSLC-DLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 422 (546)
Q Consensus 346 ~~~~~~-~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 422 (546)
. .... ..-|...|.+|.-+| .+.+|+||+.|-.|++||.++ ++.+. ..... ...+++.++|...
T Consensus 200 ~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------~~~v~--GGVWRi~~~p~~~--- 266 (339)
T KOG0280|consen 200 T-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------KAKVG--GGVWRIKHHPEIF--- 266 (339)
T ss_pred c-eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------cCccc--cceEEEEecchhh---
Confidence 2 1222 125888899999888 788999999999999999984 33322 11122 3347888888743
Q ss_pred eeEEeeeeeecCCCCcCcceEEEECCchhh-----hHhhcCCCCCcccceeeecCCCcEEEEec--CCcEE-EEcCCCCC
Q 009022 423 LAVIGRYISENYNGAALHPIDFIDITTGQL-----VAEVMDPNITTISPVNKLHPRDDVLASGS--SRSIF-IWRPKEKS 494 (546)
Q Consensus 423 ~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--dg~i~-vwd~~~~~ 494 (546)
+++++ ...-+-.+|-+.+.+.. +.....|+ .-.+.- .|.....+|||++ |..++ +|-..++.
T Consensus 267 ----~~lL~----~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd-Sl~YG~-DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 267 ----HRLLA----ACMHNGAKILDSSDKVLEFQIVLPSDKIHD-SLCYGG-DWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ----hHHHH----HHHhcCceEEEecccccchheeeecccccc-ceeecc-ccccccceeeeeeccccceeeeeeeccCC
Confidence 22222 12222255555544322 12222333 222222 5655567899987 88866 88877665
Q ss_pred c
Q 009022 495 E 495 (546)
Q Consensus 495 ~ 495 (546)
.
T Consensus 337 ~ 337 (339)
T KOG0280|consen 337 P 337 (339)
T ss_pred c
Confidence 3
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.3e-11 Score=114.30 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=149.1
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCC--CCCCC
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPN--GWHGP 263 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~ 263 (546)
|++++....|+-+++..+..+.-+ ....+.++++..++- ..+|++|+.+|.|.+||.+.......+..... ...+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEcccccccccc-ccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 444444557888999988877666 456689999999998 88999999999999999998877776655433 12223
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
.....|+++.|+.+|-.+++|+.+|.|.|||+++.++.. ..-|....+|..+.|.+.+..--+.......++|||-.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL--VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT 303 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee--ecccCCccceeeecccccCCCceEEecchHHhhhccccc
Confidence 333469999999999999999999999999999977653 344555668999999884333333344577899999977
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++... .......++.+|+-|++.+++++-.++.+..|=+..
T Consensus 304 Gk~~a---siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 304 GKPMA---SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCcee---eccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 66543 344556699999999999999999888888776643
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.3e-11 Score=116.20 Aligned_cols=199 Identities=16% Similarity=0.122 Sum_probs=125.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i 239 (546)
+.+..+...+.+.+|+|+|. .|+..+. ...|.+||+.++...... ...+.+.+..|+|+ ++.|+ +.+.+|..
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD-G~~la~~~~~~g~~ 264 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD-GRTLAVALSRDGNS 264 (427)
T ss_pred eEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEEccCCCc
Confidence 44556888999999999994 5655443 246999999887654332 23455678999999 66665 56777776
Q ss_pred EEEE--CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCcEEEEeC--CCCCCCcceEEeecCCCcE
Q 009022 240 SCTD--LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDA--RTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 240 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~i 314 (546)
.||. +.++.. ..+..+.. ......|+|+|+.|+..+. .|...+|.+ .++.. ..+... ....
T Consensus 265 ~Iy~~d~~~~~~-~~lt~~~~---------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~--~~lt~~--g~~~ 330 (427)
T PRK02889 265 QIYTVNADGSGL-RRLTQSSG---------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA--QRVTFT--GSYN 330 (427)
T ss_pred eEEEEECCCCCc-EECCCCCC---------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce--EEEecC--CCCc
Confidence 6664 444432 22221111 2456789999998887654 455555544 43321 111212 2234
Q ss_pred EEEEECCCCCCEEEEEeCCC---eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-c--EEEEEC
Q 009022 315 VGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-R--LRIWDS 385 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-~--i~vwd~ 385 (546)
....|+| ++++|+..+.++ .|++||+.+.... .+........+.|+|+|++|+.++.++ . +.+.++
T Consensus 331 ~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 331 TSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVT----ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeE----EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 5678999 999888776554 6999999764431 121223346789999999988877644 2 444454
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=2.5e-09 Score=98.60 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=165.1
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
++|.|.|..+.+.+..+..+.... .+ ++|+ ++.|+.+. .+..|.+||+.+.+.+..+..+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 789999999988887775444332 34 9999 66665554 4789999999999999988876542211
Q ss_pred CCcccceEEEEecCCCCEEEEEe-C-CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVAD-N-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 340 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd 340 (546)
.......++++|+|++|++.. . +..|.++|+.+++...++.. .....-+..++ ...+ +-+.||.....-
T Consensus 103 --~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e-~~~~--~~~~Dg~~~~v~ 173 (352)
T TIGR02658 103 --VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAN-DTFF--MHCRDGSLAKVG 173 (352)
T ss_pred --ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecC-CccE--EEeecCceEEEE
Confidence 011245788999999999875 3 78999999999876654322 11122222222 2222 222345444433
Q ss_pred CCCCCCCc--eeeecCC-CCcE-EEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc---cCCc---
Q 009022 341 IRRLEAGS--SLCDLPH-KRVV-NSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR---HLTP--- 409 (546)
Q Consensus 341 ~~~~~~~~--~~~~~~~-~~~v-~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~--- 409 (546)
+....... ....+.. ..++ ..-.|.+ ++.++.+... |.|.+.|+........ .......+.. ...+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--PAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--ceeeeccccccccccCCCcc
Confidence 32211100 0000000 0000 0114456 8888877766 9999999765432111 1111111110 0001
Q ss_pred eeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc-EEEEec--CCcEE
Q 009022 410 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLASGS--SRSIF 486 (546)
Q Consensus 410 ~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~sgs--dg~i~ 486 (546)
--++++|+.....++..+.-- ...-...+.|.++|+.+++.+..+.... ....+ +++||++ +|++.. ++.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~--~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~i-avS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAK--WTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSI-NVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred eeEEEcCCCCEEEEEecCCcc--ccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeE-EECCCCCeEEEEeCCCCCcEE
Confidence 015666653211111100000 0001123579999999999998886543 45566 8999999 777655 79999
Q ss_pred EEcCCCCCcccee
Q 009022 487 IWRPKEKSELVEQ 499 (546)
Q Consensus 487 vwd~~~~~~~~~~ 499 (546)
+.|+.+++.++++
T Consensus 326 ViD~~t~k~i~~i 338 (352)
T TIGR02658 326 IFDAETGKELSSV 338 (352)
T ss_pred EEECcCCeEEeee
Confidence 9999999999988
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.1e-10 Score=112.84 Aligned_cols=192 Identities=17% Similarity=0.205 Sum_probs=127.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCC---CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG-- 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg-- 237 (546)
+.+..+...+.+.+|+|+| ++|+.+... ..|++|++.++...... .+...+.+++|+|+ ++.|+ +.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spD-g~~l~~~~~~~~~~ 258 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPD-GSKLAVSLSKDGNP 258 (417)
T ss_pred EEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEECCCCCc
Confidence 4455677789999999999 566655433 47999999887554332 35566778999999 66555 445444
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.|++|++.++....... ... ......|+|+++.|+..+. .+ .|+++++.++... ........+
T Consensus 259 ~i~~~d~~~~~~~~l~~-~~~---------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTN-GPG---------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred cEEEEECCCCCEEECCC-CCC---------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 58899998776443321 111 1345679999998877654 33 6888888765421 222233467
Q ss_pred EEEEECCCCCCEEEEEeCCC---eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 315 VGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
..+.|+| ++.+|+.++.++ .|.+||+.+... ..+..........|+|++++|+..+.++
T Consensus 325 ~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe----EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 7889999 888888887765 789999875322 1122222345678999999888877654
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=3.7e-10 Score=103.59 Aligned_cols=285 Identities=16% Similarity=0.147 Sum_probs=172.8
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-----------
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG----------- 237 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----------- 237 (546)
-.-++..++|||.| ++|++.... .|.+|.-.....+..+. | ..|..+.|+|. +.+|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR--H-PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee--c-CCceecccCcc-cceeeeeccCCccChhhccCCc
Confidence 44578899999999 788887765 59999988776555542 4 46899999999 99999976543
Q ss_pred ----eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 238 ----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 238 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
.+.+||+.+|..+..+........ .-.-+.|+-+.+++|-. -...++++++ +.......... .....
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~------~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~-lr~~g 175 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYL------GWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN-LRPVG 175 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCccc------ccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh-ccccc
Confidence 499999999999888776554311 11246677777666554 3356777776 32221110000 00124
Q ss_pred EEEEEECCC-CCCEEEE-----EeCCCeEEEEECCCCCC-----------------------------------------
Q 009022 314 VVGLHCNPI-QPELLLS-----CGNDHFARIWDIRRLEA----------------------------------------- 346 (546)
Q Consensus 314 i~~~~~~p~-~~~~l~~-----~~~dg~i~iwd~~~~~~----------------------------------------- 346 (546)
|..+.|+|. ++..|+. .+..+++++|.+.....
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 555566652 1222222 22344555554431111
Q ss_pred --------Cceeeec-CCCCcEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEec
Q 009022 347 --------GSSLCDL-PHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 415 (546)
Q Consensus 347 --------~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (546)
...+... ...++|..++|.|.++.+++.+ ....+.++|++.. +. +... ...--+..|+
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~-------~~~P---e~~rNT~~fs 324 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR-------FYFP---EQKRNTIFFS 324 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE-------EecC---Cccccccccc
Confidence 0001111 2356788888888777666554 5677888887643 10 0000 0011245667
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH-hhcCCCCCcccceeeecCCCcEEEEec-------CCcEEE
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA-EVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFI 487 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~v~~~s~~~~~l~sgs-------dg~i~v 487 (546)
|. ++++....-+...|.|.+|+....-.+. .+.+.. +.++.|+|+++++.+.. |..|.|
T Consensus 325 p~---------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 325 PH---------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred Cc---------ccEEEEecCCccccceEEeccCCceEEEEEeecCC----ceEeeccCCceEEEecCCCcccccCcceEE
Confidence 76 6666655567778999999997655444 554443 23347999999988742 579999
Q ss_pred EcCCC
Q 009022 488 WRPKE 492 (546)
Q Consensus 488 wd~~~ 492 (546)
|++..
T Consensus 392 ~~v~g 396 (561)
T COG5354 392 WDVYG 396 (561)
T ss_pred EEecC
Confidence 99854
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6e-09 Score=92.19 Aligned_cols=279 Identities=11% Similarity=0.151 Sum_probs=169.6
Q ss_pred CCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCC---CeEEEEECCC--CceeeeeecCCCCCCCCC
Q 009022 192 KGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLET--GLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 192 d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 264 (546)
+.-|++|++.+.. ......-.....++-|+|+|+ .+.|.++..+ |.|--|.++. |.....-..... +
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~---g-- 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP---G-- 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC---C--
Confidence 4679999998432 222222346778899999999 8788877654 6677776664 443332221111 1
Q ss_pred cccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeecCCCc----------EEEEEECCCCCCEEEEEeC-
Q 009022 265 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSK----------VVGLHCNPIQPELLLSCGN- 332 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------i~~~~~~p~~~~~l~~~~~- 332 (546)
.+.+.+++++++++++++. ..|.|.++-++..-.+........|.+. +....+.| ++++|++...
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG 165 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG 165 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC
Confidence 1247899999999999885 4589999998764333333333333323 77889999 8988888753
Q ss_pred CCeEEEEECCCCCCCceee-ecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCC--CCCCCCcceeeccCCcccCC
Q 009022 333 DHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFG--NLDSPSREIVHSHDFNRHLT 408 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~ 408 (546)
--.|.+|++..+.....-. .+.....-..|.|+|++++..+.+. +++|.+|..... ++..-........++.+...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 3368999998544322211 1134555688999999999877665 899999998873 32111111112233444433
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc--hhhhHhhcCCCC--CcccceeeecCCCcEEEEec--C
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--GQLVAEVMDPNI--TTISPVNKLHPRDDVLASGS--S 482 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~--~~~~~~~~~~~~--~~i~~v~~~s~~~~~l~sgs--d 482 (546)
.-.+..+|+ |+|+-. +-.....|-+|.+.. |+ +..+..... ..-... .|+|.|++|++++ +
T Consensus 246 ~aaIhis~d---------GrFLYa--sNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F-~i~~~g~~Liaa~q~s 312 (346)
T COG2706 246 AAAIHISPD---------GRFLYA--SNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDF-NINPSGRFLIAANQKS 312 (346)
T ss_pred eeEEEECCC---------CCEEEE--ecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccc-eeCCCCCEEEEEccCC
Confidence 334555665 777653 222234677776643 32 221111110 111222 6899999999988 5
Q ss_pred CcEEEEcCCC
Q 009022 483 RSIFIWRPKE 492 (546)
Q Consensus 483 g~i~vwd~~~ 492 (546)
..|.+|....
T Consensus 313 d~i~vf~~d~ 322 (346)
T COG2706 313 DNITVFERDK 322 (346)
T ss_pred CcEEEEEEcC
Confidence 8899998653
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=127.61 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=151.9
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
.+-..|.++.=+|. ..+.++|+.||.+++|....++.+..+..... ..++.+.|+.+|+.+..+..||.+.
T Consensus 2206 ~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------SRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc--------chhhhhhhcccCCceeeeccCCcee
Confidence 35567888888898 88999999999999999998888877654332 2588999999999999999999999
Q ss_pred EEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 292 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
+|.... .......-|......+.|-. ..+++++ .++.+.+||..-......+. ..|.+.++++++.|..
T Consensus 2277 l~q~~p----k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2277 LWQASP----KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKH 2348 (2439)
T ss_pred ecccCC----cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcc
Confidence 998873 22223344444667777753 5666665 47899999976444333444 4799999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
++|++|+.+|.|++||++..+++..... |. .-.++. +|+..|.|+||++.
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~-----------------~~----------~~~~f~---~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LD----------TREYFV---TGSSEGNIKIWRLS 2398 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh-----------------hh----------hhheee---ccCcccceEEEEcc
Confidence 9999999999999999987665221110 11 033444 79999999999999
Q ss_pred chhhhHhhcC
Q 009022 449 TGQLVAEVMD 458 (546)
Q Consensus 449 ~~~~~~~~~~ 458 (546)
....+.++..
T Consensus 2399 ~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2399 EFGLLHTFPS 2408 (2439)
T ss_pred ccchhhcCch
Confidence 8888777754
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=9.1e-10 Score=108.34 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=117.5
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|.++|.......... .+...+...+|+|+ +++|+.+... ..|++|++.++.......... .+
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~----------~~ 236 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREKVASFPG----------MN 236 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC----------Cc
Confidence 46888887654433333 36667889999999 8888877653 479999999886543322111 25
Q ss_pred EEEEecCCCCEEEEE-eCC--CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECCC
Q 009022 270 YGMDINPEKGVVLVA-DNF--GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRR 343 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~ 343 (546)
.+++|+|+++.|+.. +.+ ..|++|++.++... ....+........|+| +++.|+..+. .+ .|+++++.+
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 568899999977754 433 36889998875432 1222222345678999 8887776554 33 578888765
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCC
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGN 389 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg---~i~vwd~~~~~ 389 (546)
.+. ..+ ..+...+..+.|+|++++|+.++.++ .|.+||+.++.
T Consensus 312 ~~~-~~l--~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 312 GEV-RRL--TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCE-EEe--ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 332 112 22445567889999999999888776 78899987654
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.1e-09 Score=106.42 Aligned_cols=245 Identities=13% Similarity=0.093 Sum_probs=137.4
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCE--E-EEEeCC--CeEEEEECCCCceeeeeecCCCCCCCCCccc
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT--V-YAASSD--GTVSCTDLETGLALSLMNVNPNGWHGPRTWR 267 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l-~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 267 (546)
..|.+.|.......... .....+.+-+|+|+ ++. + ++...+ ..|.+.++.+++.........
T Consensus 165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---------- 231 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---------- 231 (428)
T ss_pred ceEEEEcCCCCCceEcc--cCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEeecCCC----------
Confidence 36777777655443332 24556677899999 553 2 244433 358888998876554433221
Q ss_pred ceEEEEecCCCCEEEEEeC-CC----cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEEEE--
Q 009022 268 MLYGMDINPEKGVVLVADN-FG----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIW-- 339 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iw-- 339 (546)
.....+|+|||+.|+.... .| .+.+|++..+...................+|+| ++..|+..+ .+|...||
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 2345789999998887653 22 334466654311111111111222346789999 888777655 45655555
Q ss_pred ECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEec
Q 009022 340 DIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 415 (546)
Q Consensus 340 d~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (546)
++..... ....+ .+...+....|+|+|+.|+..+.+ ..|.+||+.+++.... ... . .......|+
T Consensus 311 ~~~~~g~--~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-----t~~--~--~~~~~p~wS 379 (428)
T PRK01029 311 QIDPEGQ--SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-----TTS--P--ENKESPSWA 379 (428)
T ss_pred ECccccc--ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-----cCC--C--CCccceEEC
Confidence 4432111 11112 234466789999999998876553 3699999988764211 111 0 112357899
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
|+ |++++..........|.++++.+++......+. +.+... +|+|-.
T Consensus 380 pD---------G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~--g~~~~p-~Ws~~~ 426 (428)
T PRK01029 380 ID---------SLHLVYSAGNSNESELYLISLITKKTRKIVIGS--GEKRFP-SWGAFP 426 (428)
T ss_pred CC---------CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CcccCc-eecCCC
Confidence 98 544442223334567999999877643332221 223333 687743
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.2e-09 Score=106.98 Aligned_cols=236 Identities=13% Similarity=0.138 Sum_probs=137.8
Q ss_pred cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-C--CeEEEEECCCCceeeeeecCCCCCCCCCcccceE
Q 009022 194 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-D--GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 194 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 270 (546)
.|.++|......... ..+...+.+..|+|+ ++.|+..+. + ..|++||+.+++......... ...
T Consensus 199 ~l~i~d~dG~~~~~l--~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g----------~~~ 265 (448)
T PRK04792 199 QLMIADYDGYNEQML--LRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG----------ING 265 (448)
T ss_pred EEEEEeCCCCCceEe--ecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC----------CcC
Confidence 677778766544333 346778899999999 777776544 3 358899998876543321111 134
Q ss_pred EEEecCCCCEEEEE-eCCC--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECCCC
Q 009022 271 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 344 (546)
Q Consensus 271 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~ 344 (546)
...|+|+|+.|+.. ..+| .|+++|+.++... ....+.......+|+| +++.|+..+. ++ .|+++|+.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 67899999988764 5556 4888888765432 2222233567789999 8887766553 33 5667777654
Q ss_pred CCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
+. ..+. . ........+|+|+|++|+..+.. + .|.++|+.++.... +.... ......|+|+
T Consensus 341 ~~-~~Lt-~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-----lt~~~-----~d~~ps~spd---- 403 (448)
T PRK04792 341 KV-SRLT-F-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-----LTSTR-----LDESPSVAPN---- 403 (448)
T ss_pred CE-EEEe-c-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-----ccCCC-----CCCCceECCC----
Confidence 32 2221 1 22223457899999998776653 4 35567777664311 11110 1113468888
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
|++++....-.....|.+++. +|.....+..+. +.+... +|+|
T Consensus 404 -----G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~-g~~~~p-~Wsp 446 (448)
T PRK04792 404 -----GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ-GEVKSP-AWSP 446 (448)
T ss_pred -----CCEEEEEEecCCceEEEEEEC-CCCceEECcCCC-CCcCCC-ccCC
Confidence 444442111222345777786 565555554432 334444 7877
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.9e-11 Score=126.02 Aligned_cols=198 Identities=17% Similarity=0.223 Sum_probs=148.5
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
++.|-..|.++.-+|.. .+.+||+.||.|++|....+..+..+...-...|+.+.|+.+ |+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeecccC
Confidence 44466788999999988 589999999999999999888877776556689999999999 8899999999999999987
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE---eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA---DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
.+.....+.+.. ....+.|-. ..++++ +.++.+.+||..-.....-+. ..|.+.++++++.|
T Consensus 2282 -pk~~~s~qchnk---------~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNK---------ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP- 2346 (2439)
T ss_pred -CcceeccccCCc---------cccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-
Confidence 333333333332 345555543 445554 456899999976543332222 44556899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
..++|++|+.+|.|++||++..+....+ .. ++ ...+|++|+..|.|+||++....++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~-------~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTF-------QA----LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHh-------hh----hh-hhheeeccCcccceEEEEccccchhh
Confidence 9999999999999999999754332222 11 44 67789999999999999998765544
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.1e-11 Score=114.32 Aligned_cols=217 Identities=15% Similarity=0.208 Sum_probs=151.1
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC-------ceeEEecccCCCceEEEEEecCCCCEEEE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYA 232 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 232 (546)
+.....+.||+..|..++--.+. +-+++++.|.+|++|.+... .+..++ +.|..+|..+.|-.+ .+++++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~-lr~i~S 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD-LRSIAS 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec-cceeee
Confidence 34456789999999998776655 56999999999999998642 244555 789999999999987 666665
Q ss_pred EeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEe--ec
Q 009022 233 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILI--HR 309 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~ 309 (546)
+ ||.|++||.--+..+..+...+.. .....|.++. +-+...+++| +...+|+++|.+........... ..
T Consensus 802 c--D~giHlWDPFigr~Laq~~dapk~----~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMEDAPKE----GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred c--cCcceeecccccchhHhhhcCccc----CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 4 788999998877776644332211 1111233332 2234445444 77889999999987766554443 23
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEE-EECCCC
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI-WDSIFG 388 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~v-wd~~~~ 388 (546)
....+.+++..| .|+.++++-..|.|.+.|.++++.....+. .......++ .|..+.|+....|.++.| |....|
T Consensus 875 Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 875 PNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 335688999999 999999999999999999998765443332 222233332 356667777778888888 877666
Q ss_pred CC
Q 009022 389 NL 390 (546)
Q Consensus 389 ~~ 390 (546)
..
T Consensus 951 im 952 (1034)
T KOG4190|consen 951 IM 952 (1034)
T ss_pred ee
Confidence 54
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.4e-09 Score=105.43 Aligned_cols=237 Identities=10% Similarity=0.083 Sum_probs=139.4
Q ss_pred cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCCCCCCCCCcccceE
Q 009022 194 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 194 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 270 (546)
.|.++|......... ..+...+....|+|+ ++.|+..+.+ ..|.+|++.++......... . ...
T Consensus 180 ~l~~~d~~g~~~~~l--~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g---------~~~ 246 (430)
T PRK00178 180 TLQRSDYDGARAVTL--LQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-G---------LNG 246 (430)
T ss_pred EEEEECCCCCCceEE--ecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-C---------CcC
Confidence 477788776544333 346778899999999 7887766543 36999999988654432111 0 244
Q ss_pred EEEecCCCCEEEEE-eCCC--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECCCC
Q 009022 271 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 344 (546)
Q Consensus 271 ~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~ 344 (546)
...|+|+|+.|+.. ..+| .|++||+.++... ....+........|+| ++..|+..+. +| .|+++++.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 67899999988754 4444 6888899876432 1222233456778999 8887766553 33 5777787654
Q ss_pred CCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
+. ..+.. .........|+|+|++|+..+.. + .|.+||+.++.... +. .. .. .....|+|+
T Consensus 322 ~~-~~lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-----lt-~~-~~---~~~p~~spd---- 384 (430)
T PRK00178 322 RA-ERVTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-----LT-DT-SL---DESPSVAPN---- 384 (430)
T ss_pred CE-EEeec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-----cc-CC-CC---CCCceECCC----
Confidence 42 22221 11223457899999999877653 3 48888988765311 11 11 11 123578887
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
|++++..........|.++++. |.....+..+. +.+... +|+|-
T Consensus 385 -----g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~-g~~~~p-~ws~~ 428 (430)
T PRK00178 385 -----GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQ-GEVREP-SWSPY 428 (430)
T ss_pred -----CCEEEEEEecCCceEEEEEECC-CCceEECcCCC-CCcCCC-ccCCC
Confidence 4444421122223457777774 33333343222 333434 67663
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.28 E-value=9.8e-10 Score=92.54 Aligned_cols=196 Identities=11% Similarity=0.014 Sum_probs=137.8
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
+||.||..|...+|...+.+....+-..|...|+-+.=..+..-.+..++.|.++++.++..+.....+....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~------- 158 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN------- 158 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-------
Confidence 7999999999999999977665555445555444333222224467778889999998887654433322211
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
..+.+++++++++++++.+....|.+|.+..................-.+..|+. ....+|++..||++.|||+|..
T Consensus 159 --~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 159 --LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred --cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEeccc
Confidence 1378999999999999999999999999876443222222222333456778888 7889999999999999999976
Q ss_pred CCCceeee---cCCCCcEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCCC
Q 009022 345 EAGSSLCD---LPHKRVVNSAYFSPSGS--KILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 345 ~~~~~~~~---~~~~~~v~~~~~~p~~~--~l~s~s~dg~i~vwd~~~~~~ 390 (546)
........ ..|.+.+..+.|+|.|. +|+..-.-+.+.|-|+++++-
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 55322211 15899999999998543 455555567899999988753
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.3e-09 Score=105.08 Aligned_cols=201 Identities=14% Similarity=0.199 Sum_probs=122.1
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCCe--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGT-- 238 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~-- 238 (546)
+.+..+...+.+..|+|+|.+++++...++ .|.+||+.+++..... ..........|+|+ ++.|+ +.+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPD-G~~La~~~~~~g~~~ 287 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPD-GKKLALVLSKDGQPE 287 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCC-CCEEEEEEeCCCCeE
Confidence 345556778899999999954444433333 5888898876543332 12334457899999 76665 4566664
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
|++||+.+++...... +. ......+|+|+++.|+..+. ++ .|+++|+.+++.. .+... .....
T Consensus 288 Iy~~dl~tg~~~~lt~-~~---------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~~--g~~~~ 353 (448)
T PRK04792 288 IYVVDIATKALTRITR-HR---------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTFE--GEQNL 353 (448)
T ss_pred EEEEECCCCCeEECcc-CC---------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEecC--CCCCc
Confidence 7888888776543221 11 12456789999998877653 33 5777787765432 11112 22344
Q ss_pred EEEECCCCCCEEEEEeC-CC--eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-Cc--EEEEECC
Q 009022 316 GLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-NR--LRIWDSI 386 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-g~--i~vwd~~ 386 (546)
..+|+| ++++|+..+. .+ .|.++|+.++.. ..+. .........|+|+|+.|+..+.+ +. +.++++.
T Consensus 354 ~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt---~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 354 GGSITP-DGRSMIMVNRTNGKFNIARQDLETGAM-QVLT---STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeeECC-CCCEEEEEEecCCceEEEEEECCCCCe-EEcc---CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 578999 8888776654 34 456677765432 1221 11122345899999988776653 33 6667763
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.6e-09 Score=105.16 Aligned_cols=200 Identities=11% Similarity=0.116 Sum_probs=126.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEc-CC--CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGD-KK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG-- 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg-- 237 (546)
+.+..|...+...+|+|+|. .|+..+ .+ ..|.+|++.++...... ...+.+....|+|+ ++.|+ +...+|
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpD-G~~la~~~~~~g~~ 267 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPD-GSKLAFVLSKDGNP 267 (430)
T ss_pred eEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCC-CCEEEEEEccCCCc
Confidence 44556778899999999995 554443 32 36999999877654332 23345567899999 76665 555555
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
.|++||+.++...... .... ......|+|+++.|+..+. +| .|+++++.+++... + ... ....
T Consensus 268 ~Iy~~d~~~~~~~~lt-~~~~---------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~~--~~~~ 333 (430)
T PRK00178 268 EIYVMDLASRQLSRVT-NHPA---------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TFV--GNYN 333 (430)
T ss_pred eEEEEECCCCCeEEcc-cCCC---------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ecC--CCCc
Confidence 5888899887654322 1111 2455789999998877653 33 67778887655321 1 111 1234
Q ss_pred EEEEECCCCCCEEEEEeCC-C--eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECC
Q 009022 315 VGLHCNPIQPELLLSCGND-H--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSI 386 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~ 386 (546)
....|+| +++.|+..+.. + .|.+||+.+... ..+ ..........|+|+|++|+..+.+ ..|.++++.
T Consensus 334 ~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECC-CCCEEEEEEccCCceEEEEEECCCCCE-EEc---cCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 4578999 88888776643 3 588899876432 222 122223356899999998877654 346666664
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.6e-09 Score=102.09 Aligned_cols=207 Identities=13% Similarity=0.106 Sum_probs=124.2
Q ss_pred eccccCCCeEEEEEcCCCCc--EEEEEcCCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-CC--
Q 009022 165 VIRYHSRRVTCLEFHPTNNH--ILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DG-- 237 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~--~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg-- 237 (546)
.|......+.+-+|+|+|.+ ++++...+| .|.+.++.++...... ...+.....+|+|+ ++.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD-G~~Laf~s~~~g~~ 255 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR-KKLLAFISDRYGNP 255 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC-CCEEEEEECCCCCc
Confidence 34445566778899999954 333444443 5777788876544433 24445567899999 767665542 23
Q ss_pred --eEEEEECCCC---ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCc--EEEEeCCCCCCCcceEEeec
Q 009022 238 --TVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGF--LYLVDARTNSRSGEAILIHR 309 (546)
Q Consensus 238 --~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~ 309 (546)
.+.+|++..+ .......... ......+|+|+|+.|+..+ .+|. |+++++...... ......
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--~~~lt~ 324 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--PRLLTK 324 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCC---------CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--eEEecc
Confidence 3444676653 2222211110 1235678999999888765 4564 445555321111 112222
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCC---CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC---CCcEEEE
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIW 383 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~---dg~i~vw 383 (546)
....+....|+| +++.|+..+.+ ..|.+||+.+++.. .+ ......+..+.|+|+|+.|+..+. ...|.+|
T Consensus 325 ~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~L--t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 325 KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDY-QL--TTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeE-Ec--cCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 223567889999 89888766543 46999999765431 12 122345678999999998875443 3468888
Q ss_pred ECCCCC
Q 009022 384 DSIFGN 389 (546)
Q Consensus 384 d~~~~~ 389 (546)
++..++
T Consensus 401 dl~~g~ 406 (428)
T PRK01029 401 SLITKK 406 (428)
T ss_pred ECCCCC
Confidence 887665
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=5.5e-09 Score=101.07 Aligned_cols=273 Identities=15% Similarity=0.068 Sum_probs=163.8
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
.+++++.++.|.-+|..+++...... ........... + +..++.++.+|.|..+|..+|+.+........
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------ 136 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE------ 136 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCce------
Confidence 67888888999999999988877653 22211122222 3 66788888899999999999998876544321
Q ss_pred cccceEE-EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 265 TWRMLYG-MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 265 ~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
+.+ ... .+..+++++.+|.|+.||..+++...+........ ......... + ..++.+..++.+..+|+
T Consensus 137 ----~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 137 ----VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred ----eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEc
Confidence 111 111 35577788889999999999887654321110000 000011111 2 46777888899999998
Q ss_pred CCCCCCceeeec-CCC-C---cEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEe
Q 009022 342 RRLEAGSSLCDL-PHK-R---VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 414 (546)
Q Consensus 342 ~~~~~~~~~~~~-~~~-~---~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (546)
.+++..-..... ... . .+..+.-+| .+..+++++.+|.+..||+.+|+...... ...
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-------~~~--------- 271 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-------ASS--------- 271 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-------cCC---------
Confidence 765532111100 000 0 000111112 35678888889999999999886532111 000
Q ss_pred cCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 415 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
.....+.+..+. .+..++.|..+|..+|+.+.............. ...+..|++++ +|.|++||..+|
T Consensus 272 -----~~~p~~~~~~vy---v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp---~i~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 272 -----YQGPAVDDNRLY---VTDADGVVVALDRRSGSELWKNDELKYRQLTAP---AVVGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred -----ccCceEeCCEEE---EECCCCeEEEEECCCCcEEEccccccCCccccC---EEECCEEEEEeCCCEEEEEECCCC
Confidence 011112233333 456789999999999987755422111111111 12466788888 999999999999
Q ss_pred Cccceeeccc
Q 009022 494 SELVEQKEEM 503 (546)
Q Consensus 494 ~~~~~~~~~~ 503 (546)
+.+.+++.+.
T Consensus 341 ~~~~~~~~~~ 350 (377)
T TIGR03300 341 SFVARLKTDG 350 (377)
T ss_pred CEEEEEEcCC
Confidence 9998887655
No 260
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=5.7e-10 Score=93.54 Aligned_cols=200 Identities=20% Similarity=0.208 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe-----------cccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-----------GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
|+.+.|+-+- .|+++..++.+.........+.... ...|..+-.+-..+-. ++.++++..||.+.+
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc-CCceEecCCCceEEE
Confidence 6677776653 5788877777766655433221111 0123332222222222 678999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-----NFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
++.+.- .+.....+.... .-.+.++...+..+.++. .-+..+.|+++..+.. ...+.....|.+
T Consensus 116 ~s~~~~--~~~~~~i~~~~~------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 116 FSTDKD--LALMSRIPSIHS------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL---IPSKKALDAVTA 184 (319)
T ss_pred EechHH--Hhhhhhcccccc------cccccceeecccEEecCCcceEeeccceeeecccccccc---cccccccccchh
Confidence 998752 111100000000 112222333444444432 2245566666553322 222333335999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++-+|...+++++|+.+|.+-+||.++.... .-....|...|..+-|+| ++..|++++.||.+..||..+
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEcccccch-HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999977788899999999999999876332 112237999999999999 899999999999999999864
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=7.9e-10 Score=96.38 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=152.3
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce-----eeeeecCCCCC---CCCCcccceEEEEecCCC--CEEE
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGW---HGPRTWRMLYGMDINPEK--GVVL 282 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~ 282 (546)
....|.+|.|... |.+|++|..+|.|.++.-..... ...+..|...+ ........|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 4457899999999 99999999999999996543321 12222222111 111222357888998865 4788
Q ss_pred EEeCCCcEEEEeCCCCCCCc------------------ce---------------EEeecCCCcEEEEEECCCCCCEEEE
Q 009022 283 VADNFGFLYLVDARTNSRSG------------------EA---------------ILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 283 ~~~~dg~i~i~d~~~~~~~~------------------~~---------------~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
..+.|.+|++|.+....... .+ .-.+.|...|++|.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 88999999999876432111 00 01234566789999998 8888887
Q ss_pred EeCCCeEEEEECCCCCCCceeeec-CC-----CCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDL-PH-----KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~-~~-----~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
+. |=.|.+|++.-......+... ++ ..-|++..|+| ..++|+-++..|+|++-|++...+...
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~--------- 251 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA--------- 251 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc---------
Confidence 64 778999998643332222222 22 34688999999 677888888899999999975433110
Q ss_pred CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecC
Q 009022 403 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSS 482 (546)
Q Consensus 403 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsd 482 (546)
+ -+++.......-..+...-...|..+ .|+++|+|+++-+=
T Consensus 252 ---h-----------------------------------sKlfEepedp~~rsffseiIsSISDv-KFs~sGryilsRDy 292 (433)
T KOG1354|consen 252 ---H-----------------------------------SKLFEEPEDPSSRSFFSEIISSISDV-KFSHSGRYILSRDY 292 (433)
T ss_pred ---h-----------------------------------hhhhccccCCcchhhHHHHhhhhhce-EEccCCcEEEEecc
Confidence 0 00110000000001111112556677 89999999999888
Q ss_pred CcEEEEcC-CCCCccceeeccce
Q 009022 483 RSIFIWRP-KEKSELVEQKEEMK 504 (546)
Q Consensus 483 g~i~vwd~-~~~~~~~~~~~~~~ 504 (546)
-+|+|||+ ...+++.++..|.-
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred ceeEEEeccccCCcceEEeehHh
Confidence 99999999 45566776666543
No 262
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=8.9e-12 Score=121.13 Aligned_cols=203 Identities=19% Similarity=0.193 Sum_probs=144.8
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe-CCC-
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDG- 237 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg- 237 (546)
...+++|..|+..-+|++|+-.. +.|+.|+..|.|+++++.++.....+ .+|..+|+.+.-+.+ +..+++.+ ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~d-gs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVD-GSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccc-cccccccccccccCC-cceeeeeccccCc
Confidence 34456788899999999999987 78999999999999999999888877 799999999998888 55555444 333
Q ss_pred eEEEEECCC-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-ecCCCcEE
Q 009022 238 TVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVV 315 (546)
Q Consensus 238 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~ 315 (546)
-..+|++.. +.....+ ....++.|+.....-+.|+......+||+.+.....+.+.. ......-+
T Consensus 1168 lsaLW~~~s~~~~~Hsf-------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF-------------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred hHHHhccccccCccccc-------------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 467898864 2222222 13567788887777777887789999999998876654332 12222347
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
+..|+| ...+++- || .+||+|.......+-.+ . .-..-.|+|+|..++..+ -|||+++.+++.
T Consensus 1235 ~a~FsP-~D~LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSP-CDTLILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCC-CcceEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 788999 6666553 55 47999865433322221 1 122346999999998875 589999988754
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=2.9e-08 Score=106.52 Aligned_cols=212 Identities=12% Similarity=0.140 Sum_probs=128.8
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc-cC------------CCceEEEEEecCCCCEEEEE-eCCCeE
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-IH------------SCIVNNIRFNPTNDGTVYAA-SSDGTV 239 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~~l~s~-~~dg~i 239 (546)
..+++++.+.+++++-...+.|++||..... ...+.. +. -.....|++.++ ++.|+.+ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-KNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCC-CCEEEEEeCCCceE
Confidence 4678887654788888888999999986543 222211 11 123578999998 6655554 446789
Q ss_pred EEEECCCCceeeeeecCC-CC--CCCC-----CcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcc-----eE
Q 009022 240 SCTDLETGLALSLMNVNP-NG--WHGP-----RTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGE-----AI 305 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~-~~--~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~ 305 (546)
+++|+.++... .+.... .. ..+. ......+.++++| ++.++++...++.|++||..++....- ..
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99998876533 222110 00 0000 0012356899999 556666667889999999876532100 00
Q ss_pred Eee------cCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCCCce----------eeecC---------CCCcE
Q 009022 306 LIH------RKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSS----------LCDLP---------HKRVV 359 (546)
Q Consensus 306 ~~~------~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~---------~~~~v 359 (546)
... ........|+++| ++. ++++-+.++.|++||+.+...... +..++ .-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 000 0112456799999 766 555666789999999875432100 00000 01123
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 360 NSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
..++++++|.++++-+.+++|++||..++.
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 578899999888888889999999987654
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=104.05 Aligned_cols=293 Identities=14% Similarity=0.152 Sum_probs=190.4
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--------------eEEecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--------------KIVYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
.....|++|+... .++|+|+.||.++|..+.+... ......+|...|.-+.|+.+ ...|-+...
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCC
Confidence 3467899999987 6999999999999998865321 11122689999999999988 888999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
+|.|.+|-+-.|.-...+.-. +....|.+++|+.+|..|+....||.|.+=.+...+...+.+... ...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNn-------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~ 160 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINN-------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLA 160 (1189)
T ss_pred CceEEEEeeecccHHHHHhhC-------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----ecc
Confidence 999999999877654433221 122359999999999999999999999988877665554432222 356
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCC----Cce-eeec----CCCCcEEEEEEe--------CCCCEEEEEeCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSS-LCDL----PHKRVVNSAYFS--------PSGSKILTTSQDN 378 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~----~~~-~~~~----~~~~~v~~~~~~--------p~~~~l~s~s~dg 378 (546)
.+.|++ +...++.+-..|.+.+||....-. ..+ +... .....|..+.|. |+...|+++-..|
T Consensus 161 hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 161 HVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred ceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 889999 888888888899999999742110 001 1100 122236667764 4677899998899
Q ss_pred cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 379 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
.+.+-.-.+.. ..++. ......+...|+|+. ..+++.|.-.... .-...+.|++|.. -|..+.++..
T Consensus 240 r~QiMR~eND~-----~Pvv~----dtgm~~vgakWnh~G--~vLAvcG~~~da~-~~~d~n~v~Fysp-~G~i~gtlkv 306 (1189)
T KOG2041|consen 240 RMQIMRSENDP-----EPVVV----DTGMKIVGAKWNHNG--AVLAVCGNDSDAD-EPTDSNKVHFYSP-YGHIVGTLKV 306 (1189)
T ss_pred eehhhhhcCCC-----CCeEE----ecccEeecceecCCC--cEEEEccCccccc-CccccceEEEecc-chhheEEEec
Confidence 88876433211 11111 111223467899982 2222222211100 1111235666654 5777777766
Q ss_pred CCCCcccceeeecCCCcEEEEecCCcEEEEcCC
Q 009022 459 PNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~ 491 (546)
+. ..|+++ +|-..|-.+|.+-|+.|.+=+++
T Consensus 307 pg-~~It~l-sWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 307 PG-SCITGL-SWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred CC-ceeeee-EEcCCceEEEEEecceEEEEeec
Confidence 65 667777 78777766666666666554443
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=4.8e-09 Score=91.67 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=145.0
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC-CCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
.+.++||.+.|+....-|..+ -+++.+.|.++|||-- +.++.-..+......+++++.+.+. ...|+.|-..|++.-
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEE
Confidence 356889999999998888763 5999999999999953 4444444444456778999999998 889999999999988
Q ss_pred EECCCC----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 242 TDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 242 wd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
+.+... ...+....+ ...+..+-|+.....+++.+.|..+.---.+.+..+....... ..+++
T Consensus 95 fs~sedfnkm~~~r~~~~h---------~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----~~t~~ 161 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAH---------QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----PASAL 161 (404)
T ss_pred EEhhhhhhhcchhhhhhhh---------hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----cCCCC
Confidence 876432 222222222 2358888899889999999998877665555555444332211 11222
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.+.- .+...|...|.|.+-.+............+|...+++++|.|...+|.+|..|..+.+||+--+
T Consensus 162 ~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 162 QFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred ceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 2211 1455566666666655543333334444489999999999999999999999999999998543
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.8e-09 Score=99.84 Aligned_cols=189 Identities=13% Similarity=0.202 Sum_probs=141.5
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecc--cCCCceEEEEEe------c-------------CCCCEEEEEeCCCeEEEE
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGN--IHSCIVNNIRFN------P-------------TNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~------~-------------~~~~~l~s~~~dg~i~iw 242 (546)
.++|....||.++||+...++....+.. .-++..++..|. | .+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 6899999999999999988776554431 123344455552 2 114567888889999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
++..++....+... .+...|.++.++.+-..|.+++.|+.+..|+........ .+......+.+++++|
T Consensus 86 s~~~g~it~~~st~-------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 86 SVAGGEITAKLSTD-------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLVSSLCISP- 154 (541)
T ss_pred EecCCeEEEEEecC-------CCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCccceEEEcC-
Confidence 99999988877532 223469999999999999999999999999998865443 3344444789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC-----CCEEEEEe-CCCcEEEEECCC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-----GSKILTTS-QDNRLRIWDSIF 387 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~s~s-~dg~i~vwd~~~ 387 (546)
++..+++++ +.|++||+.+.+. .....+|.++|.++.|..+ |.+++++. .+..+.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999886 6799999976554 3333489999999999876 66666553 456688886654
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.3e-10 Score=105.97 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=141.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC------C-------------CCCCEEEEEeCCCeE
Q 009022 276 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN------P-------------IQPELLLSCGNDHFA 336 (546)
Q Consensus 276 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~------p-------------~~~~~l~~~~~dg~i 336 (546)
|...++|..+.+|.+++|+...++....+.......+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999877655544433334455555552 2 144578888899999
Q ss_pred EEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecC
Q 009022 337 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 416 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 416 (546)
.+|++..++....+..-.|.+.|+++.++.+-..|.+++.|+.+..|+....+.+... ........+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~--------~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW--------KEQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------ccCCCccceEEEcC
Confidence 9999987766555555579999999999999999999999999999999876642210 11112223566667
Q ss_pred CCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC-----CcEEEEec--CCcEEEEc
Q 009022 417 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-----DDVLASGS--SRSIFIWR 489 (546)
Q Consensus 417 ~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~-----~~~l~sgs--dg~i~vwd 489 (546)
+ |..+. ...+.|++|++.+++.+.+|.||. +.+.++ +|..+ |.++.++. +..+.+|-
T Consensus 155 D---------~~~l~-----~as~~ik~~~~~~kevv~~ftgh~-s~v~t~-~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 155 D---------GKILL-----TASRQIKVLDIETKEVVITFTGHG-SPVRTL-SFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred C---------CCEEE-----eccceEEEEEccCceEEEEecCCC-cceEEE-EEEEeccccccceeeeccccccceeEEE
Confidence 6 44444 234789999999999999998887 777777 78766 67777754 78888997
Q ss_pred CCC
Q 009022 490 PKE 492 (546)
Q Consensus 490 ~~~ 492 (546)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 654
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=9.9e-08 Score=87.19 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=124.3
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-eEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-TVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
.+++..+. |...|.+...+-.+. -+|...|.-..+.-+ +.-++.|..|| .|-|+|..++........-
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l------ 401 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL------ 401 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEeeCCc------
Confidence 56777775 677777655443332 458888999999888 77899999999 8999999988755443211
Q ss_pred CCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC----eEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----FARI 338 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg----~i~i 338 (546)
..|.++..+++|++++++.....|+++|+.+++... .-....+-|+.+.|+| ++++||-+--+| .|++
T Consensus 402 ----g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 402 ----GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ----cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcC-CceeEEEecCcceeeeeEEE
Confidence 249999999999999999999999999999986532 1122234799999999 999999887665 6899
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
||+...+. .......+.=.+-+|.|++++|.--+
T Consensus 474 ydm~~~Ki---y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKI---YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeE---EEecCCcccccCcccCCCCcEEEEEe
Confidence 99975443 22222222334678899999886554
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=109.00 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=144.3
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCc---eEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeee
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI---VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 252 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (546)
..+.-.. ..++.+..+..+.|||.........+....... ..-+.++++ .-++++|+.-+.|.+|.......-..
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCcce
Confidence 3444444 567888888899999998776655553111111 122344566 77899999999999999873332223
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
+..|.. .|.++.|+.+|+++++.+.|..+++|++.+.+... ....+|...+..+++.| + .+++++.
T Consensus 171 l~GHeG---------~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~-n--~i~t~ge 236 (967)
T KOG0974|consen 171 LKGHEG---------SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP-N--RIITVGE 236 (967)
T ss_pred ecccCC---------ceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc-c--eeEEecc
Confidence 444433 59999999999999999999999999999987665 35567788999999998 4 9999999
Q ss_pred CCeEEEEECCCCCCCceeeec-CC-CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 333 DHFARIWDIRRLEAGSSLCDL-PH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~-~~-~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
|.+.++|+..- ..+..+ +| ...|..++..+....++|++.|+.+++|++...
T Consensus 237 dctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 237 DCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999997642 222222 33 456899999999999999999999999998643
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=5.5e-09 Score=89.37 Aligned_cols=207 Identities=15% Similarity=0.132 Sum_probs=138.6
Q ss_pred CCCeEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCceeEEeccc-----CCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 170 SRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 170 ~~~V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
+..+..+.|.. +|...|+-+...|.|.++..........+... ......++.|++. +..++++-.+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~-~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS-GTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc-CceEEEEcCCCcEEE
Confidence 34566666653 44335777788899999987655444333211 1112457788888 888999988999986
Q ss_pred EECCCCceee--eeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 242 TDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 242 wd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
-+...+.... ..+.|.- .++...|+. +.+.+.+|+.|+.+..||++.+.. ........|...|.+|.
T Consensus 148 v~~t~~~le~vq~wk~He~---------E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEF---------EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIY 217 (339)
T ss_pred Eecceeeeeecccccccce---------eeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEe
Confidence 6554443333 3333222 466677765 457889999999999999994331 11112334455799999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCC
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
-+|..+.+|++|+.|-.|++||.|+... ++......+.|..+.++|. ...|+.++.-+-.+|-+...+.
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGK--PLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccC--ccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 9997889999999999999999996443 4444456688999999993 2334444455557777776544
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=2.5e-09 Score=92.00 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=146.0
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-eeEEe---cccCC------------CceEEEEEecC-CCCEEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVY---GNIHS------------CIVNNIRFNPT-NDGTVY 231 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~------------~~v~~~~~~~~-~~~~l~ 231 (546)
....|+++.|...| .||++|...|.|.+|.-.... +...+ .++|. ..|..+.|..+ +...++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 44579999999999 699999999999999866543 11111 13342 35788888755 345677
Q ss_pred EEeCCCeEEEEECCCCceeee----------------------eecC------------CCCCCCCCcccceEEEEecCC
Q 009022 232 AASSDGTVSCTDLETGLALSL----------------------MNVN------------PNGWHGPRTWRMLYGMDINPE 277 (546)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~----------------------~~~~------------~~~~~~~~~~~~v~~~~~~~~ 277 (546)
..+.|.+|++|-+........ +..+ +.......+...+++++|..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888899999998864311100 0000 001112233446889999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC-----CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC----Cc
Q 009022 278 KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-----SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GS 348 (546)
Q Consensus 278 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~----~~ 348 (546)
...++++. +-.|.+|++........+.....+. .-|++..|+|...+.+.-.+..|.|++-|+|.... ..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 88888765 5688999887655444443333332 35888999998888888889999999999984221 00
Q ss_pred eeee---------c-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 349 SLCD---------L-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 349 ~~~~---------~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.+.. + +....|..+.|+++|+++++-+ --+|++||++..+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 1100 0 1235688899999999998765 4589999997543
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=7.1e-08 Score=101.57 Aligned_cols=307 Identities=12% Similarity=0.134 Sum_probs=184.6
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEE----eCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVW----DFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
..+.|.++.|.++. .-|+.+..+|.|.+. +......... ..-...|.+++|+|| ..+|+.++.+++|.+..-
T Consensus 74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--G~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIEIV--GSVDSGILAASWSPD-EELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeEEE--EEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEec
Confidence 45689999999998 467788889999999 5544333222 335778999999999 999999998888887642
Q ss_pred CCCceeeeeecCCCC-----------------CCC------------CC----------cccceEEEEecCCCCEEEEEe
Q 009022 245 ETGLALSLMNVNPNG-----------------WHG------------PR----------TWRMLYGMDINPEKGVVLVAD 285 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~-----------------~~~------------~~----------~~~~v~~~~~~~~~~~l~~~~ 285 (546)
+-..+......... +++ +. ....-..|+|-.||.++|+.+
T Consensus 150 -~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 -DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred -cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 22222222211110 000 00 111356789999999999986
Q ss_pred C------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCCCceeeec-CC
Q 009022 286 N------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDL-PH 355 (546)
Q Consensus 286 ~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~~ 355 (546)
- -..+++|+-. +..... ...-.+--.+++|-| .|++||+.-. ...|.+|.-+-.+.+.-.... ..
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~st---SE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQST---SEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEec---cccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCC
Confidence 4 2578888765 221111 111112234789999 9999998764 456777875533332211111 35
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEE--eeeeeec
Q 009022 356 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI--GRYISEN 433 (546)
Q Consensus 356 ~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--g~~~~~~ 433 (546)
...|..+.|++++..||+.-.|. |.+|-..+.+- .......+........+.|+|..+....... |.+....
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW-----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW-----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE-----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 66899999999999999977555 99998876542 0011111222222224889987665443332 3333211
Q ss_pred C-----C-----CCcCcceEEEECCchh-----------hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 434 Y-----N-----GAALHPIDFIDITTGQ-----------LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 434 ~-----~-----g~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
+ . ....+.+-|.|-.+-. ++..+.-.-...+..+ +|++++..+|+-. ||.|.+|...
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v-af~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV-AFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE-EEeCCCCeEEEEECCCCEEEEEec
Confidence 1 1 1134556666654321 1111111223567777 8999987677655 9999999854
Q ss_pred C
Q 009022 492 E 492 (546)
Q Consensus 492 ~ 492 (546)
.
T Consensus 457 ~ 457 (928)
T PF04762_consen 457 L 457 (928)
T ss_pred C
Confidence 4
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.6e-09 Score=96.56 Aligned_cols=282 Identities=15% Similarity=0.164 Sum_probs=179.9
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC--CceeEEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEEEECC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLE 245 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 245 (546)
|.+.|+.+...-. .++.+++.||.++.|.-.. +.........|...|.+++.+-+ +.++.+.+. |..++++|+.
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence 8888888766544 5899999999999998654 22222233678889999999988 888889777 9999999998
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCC--CEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
.-..+..++....+ ...++..++.. ..|++ .-.++.+.++|-....... ...-..|..+|.++.++|
T Consensus 85 n~DminmiKL~~lP--------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-~~fkklH~sPV~~i~y~q- 154 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP--------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-GYFKKLHFSPVKKIRYNQ- 154 (558)
T ss_pred ccchhhhcccccCC--------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-ceecccccCceEEEEeec-
Confidence 76655444432211 01111122221 13333 3567899999987654322 112233455999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-CCCCc--eeeec----------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 323 QPELLLSCGNDHFARIWDIRR-LEAGS--SLCDL----------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~-~~~~~--~~~~~----------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.+..+++....|.|.-|.... .+... ....+ .......++.|+|++..+.+-+.|..|+++++++|+
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 889999999999999998862 11100 00000 234567899999999999999999999999999999
Q ss_pred CCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhh---HhhcCCCCCcccc
Q 009022 390 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV---AEVMDPNITTISP 466 (546)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~ 466 (546)
+.+...+....... .|.. .+.+-.+.-|+.+ +.+..+.......
T Consensus 235 lvqeiDE~~t~~~~-----------q~ks----------------------~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQY-----------QPKS----------------------PYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred hhhhhhccchhhhh-----------cccc----------------------ccccceeehhhhhhHHhhHhhhcCcccce
Confidence 86654433222111 1110 1112122222222 2232333222233
Q ss_pred eeeecCCCcEEEEecCCcEEEEcCCCCCccc
Q 009022 467 VNKLHPRDDVLASGSSRSIFIWRPKEKSELV 497 (546)
Q Consensus 467 v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~ 497 (546)
+ .|...|++|+.|+==.|+|.++.++...+
T Consensus 282 ~-~fdes~~flly~t~~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 282 A-VFDESGNFLLYGTILGIKVINLDTNTVVR 311 (558)
T ss_pred e-EEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence 3 69999999999886567788877765443
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=9.9e-09 Score=99.09 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=138.6
Q ss_pred eeccccCCCeEEEEEcCCC-----------CcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC--C-CE
Q 009022 164 AVIRYHSRRVTCLEFHPTN-----------NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--D-GT 229 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~-----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~~ 229 (546)
..+..|+..|+.+.|.|-. .-+||++...|.|.|||+........+ ..|..++..++|-|.. . .+
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchhe
Confidence 4567799999999998731 136788889999999999887776666 5788899999997652 2 56
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCC---CCcceE
Q 009022 230 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNS---RSGEAI 305 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 305 (546)
|++-.....|.+|+..+|+.......... ...|+.+.| +.+.+..-+..|.+.+.+.-... ...+..
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~---------iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHE---------ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCc---------ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 77777778999999999998877655433 366788888 56666666666777666543211 111111
Q ss_pred Eee-cCCC-------------------------cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-CCCc
Q 009022 306 LIH-RKGS-------------------------KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRV 358 (546)
Q Consensus 306 ~~~-~~~~-------------------------~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~ 358 (546)
.+. .|.. ....++|+|.-.+.++ ......+.|+|+.-.. ++...+ ..+.
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~---~l~vvpier~~ 274 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYEC---CLAVVPIERGG 274 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhc---eeEEEEeccCC
Confidence 111 1000 0123567883334333 3456789999996433 333331 3334
Q ss_pred EEEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 009022 359 VNSAYFSP--SGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 359 v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+.-+.|-| +...|++.-.+|.+.+|--+.
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 45566666 555788999999999997654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=5.7e-10 Score=103.27 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=166.5
Q ss_pred ceeeeccCCCc-cccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEE
Q 009022 100 PCFLCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEF 178 (546)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 178 (546)
...+|.+.||+ .+.....+..+..+++++++.+.++|.+.-+.... .+..|..+++.|+.+|..+.|
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGF 792 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceee
Confidence 34578889999 56666777778899999999999999866554432 335688899999999999999
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecC-CCCEEEE-EeCCCeEEEEECCCCceeeeeec
Q 009022 179 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPT-NDGTVYA-ASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 179 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
-.+. ++++++ ||.|.+||.--+..+.... ....+.+..+..-|+ +..++++ ++...+|+++|.+.+.....++.
T Consensus 793 L~~l-r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADL-RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eecc-ceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9987 677765 7899999986665544222 112223333333333 1344444 47788999999999988777766
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 335 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 335 (546)
...+ .+...+.+++..+.|+.++++-.+|.|.+.|.++++.+... .........++ .| ..+.|+....|.+
T Consensus 870 cna~----~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw---rpmecdllqla-ap-sdq~L~~saldHs 940 (1034)
T KOG4190|consen 870 CNAP----GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW---RPMECDLLQLA-AP-SDQALAQSALDHS 940 (1034)
T ss_pred ccCC----CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC---Ccccchhhhhc-Cc-hhHHHHhhcccce
Confidence 5321 22235889999999999999999999999999998755422 11111122222 23 4566777777888
Q ss_pred EEE-EECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 009022 336 ARI-WDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWD 384 (546)
Q Consensus 336 i~i-wd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd 384 (546)
+.+ |..-.+.. .+...+...+. .|-. -|.-|++....+.+.||.
T Consensus 941 laVnWhaldgim--h~q~kpppepa---hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 941 LAVNWHALDGIM--HLQDKPPPEPA---HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eEeeehhcCCee--eeccCCCCcch---hhhhccCceeEEeccCcEEEEEe
Confidence 888 76532211 11111111111 1111 355566666666677764
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=5.7e-08 Score=92.20 Aligned_cols=263 Identities=17% Similarity=0.234 Sum_probs=154.3
Q ss_pred CCeEEEEEcCCCCcEEEEEcC----CCcEEEEeCCCC-ceeEEec--ccCCCceEEEEEecCCCCEEEEEe-CCCeEEEE
Q 009022 171 RRVTCLEFHPTNNHILLSGDK----KGQVGVWDFYKV-SEKIVYG--NIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCT 242 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~----d~~i~iwd~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iw 242 (546)
.....|+++|++ ++|.+... .+.|..|.+... ..+..+. .........++++|+ +++|+++. .+|.|.++
T Consensus 37 ~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~-g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD-GRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT-SSEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC-CCEEEEEEccCCeEEEE
Confidence 355678899999 56666544 679999998764 2222211 113445678999999 88877776 48999999
Q ss_pred ECCC-Cceeeeeec--CC--CCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCc-ceE-EeecCCCcE
Q 009022 243 DLET-GLALSLMNV--NP--NGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSG-EAI-LIHRKGSKV 314 (546)
Q Consensus 243 d~~~-~~~~~~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~i 314 (546)
++.. +........ +. .............++.|+|+++++++.. ....|++|++....... ... .....+...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9987 333322110 00 0000011122478899999999888864 44689999997755211 111 122344568
Q ss_pred EEEEECCCCCCEEEEE-eCCCeEEEEECCCCCC----CceeeecC----CCCcEEEEEEeCCCCEEEEEeC-CCcEEEEE
Q 009022 315 VGLHCNPIQPELLLSC-GNDHFARIWDIRRLEA----GSSLCDLP----HKRVVNSAYFSPSGSKILTTSQ-DNRLRIWD 384 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~----~~~~~~~~----~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd 384 (546)
..+.|+| ++.++++. -.++.|.+|++..... .+.+..++ .......|.++|+|++|+++.. .+.|.+|+
T Consensus 195 Rh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 9999999 87766554 4678899999872111 11122221 1225788999999999877664 67899999
Q ss_pred CC--CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC--Cchhhh
Q 009022 385 SI--FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI--TTGQLV 453 (546)
Q Consensus 385 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~--~~~~~~ 453 (546)
+. ++++.. ... ... ....|..+.++|+ |+++.. +...++.|.+|++ .+|.+.
T Consensus 274 ~d~~~g~l~~-~~~-~~~----~G~~Pr~~~~s~~---------g~~l~V--a~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 274 LDPATGTLTL-VQT-VPT----GGKFPRHFAFSPD---------GRYLYV--ANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ECTTTTTEEE-EEE-EEE----SSSSEEEEEE-TT---------SSEEEE--EETTTTEEEEEEEETTTTEEE
T ss_pred EecCCCceEE-EEE-EeC----CCCCccEEEEeCC---------CCEEEE--EecCCCeEEEEEEeCCCCcEE
Confidence 94 333311 010 111 1222456777887 666652 3345577888865 566543
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4e-08 Score=91.68 Aligned_cols=198 Identities=13% Similarity=0.165 Sum_probs=131.0
Q ss_pred cCCCeEEEEEcCCC-CcEEEE-----EcCCCcEEEEeCCCCceeEE--ecccCCCceEEEEEecCCCCEEEEEeC-----
Q 009022 169 HSRRVTCLEFHPTN-NHILLS-----GDKKGQVGVWDFYKVSEKIV--YGNIHSCIVNNIRFNPTNDGTVYAASS----- 235 (546)
Q Consensus 169 h~~~V~~l~~~~~~-~~~l~s-----~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~----- 235 (546)
|...|+.+.+||.+ ...+|+ +|.=+.|+||.+........ ........=..+.|++-+..+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 67889999999973 234443 35567899999873221111 101122233457888875555555543
Q ss_pred ------CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE--EeCCCcEEEEeCCCCCCCcceEEe
Q 009022 236 ------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV--ADNFGFLYLVDARTNSRSGEAILI 307 (546)
Q Consensus 236 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~ 307 (546)
..++++++++...+. +.+... .+|.++.|+++++.+++ |..-..+.|||++..- ..
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~--V~L~k~--------GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~ 307 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVS--VPLLKE--------GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VF 307 (566)
T ss_pred CccccccceEEEEEecCceEE--EecCCC--------CCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eE
Confidence 246888887733322 222222 26999999999987776 4566789999988521 22
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC------CC
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ------DN 378 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~------dg 378 (546)
.-..++-+++-|+| .+++|+.+|. .|.|-|||+.+.+....+ ....-+-+.|+|+|.+|+|++. |+
T Consensus 308 df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~----~a~~tt~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 308 DFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF----KAANTTVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred eCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccc----ccCCceEEEEcCCCcEEEEEeccccEEecC
Confidence 22334788999999 9998888774 578999999875443222 2233456899999999999876 68
Q ss_pred cEEEEECCC
Q 009022 379 RLRIWDSIF 387 (546)
Q Consensus 379 ~i~vwd~~~ 387 (546)
.++||+...
T Consensus 383 g~KiwhytG 391 (566)
T KOG2315|consen 383 GIKIWHYTG 391 (566)
T ss_pred CeEEEEecC
Confidence 899999853
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=2.2e-08 Score=95.93 Aligned_cols=262 Identities=14% Similarity=0.180 Sum_probs=153.2
Q ss_pred CCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEE
Q 009022 108 GHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILL 187 (546)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 187 (546)
.|....|...+.....++.++.++..++..+.....-.. .++..........++|.||.+.|.-+.|+.+. +-|.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccc-cccc
Confidence 344444555544555556666666655554333222111 11111122233447899999999999999988 5699
Q ss_pred EEcCCCcEEEEeCCCCceeEE-ecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCC--------
Q 009022 188 SGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPN-------- 258 (546)
Q Consensus 188 s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 258 (546)
|...+|.|.||-+-.+.-... +.....+.|.+++|+.+ |..++....||.|.+=.++... +.--.+...
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWS 165 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccce-ecchhcchheccceeec
Confidence 999999999999877653222 22346678999999999 8898888888888765554321 110000000
Q ss_pred ----------------------CCC---CCCc-----------ccceEEEEec--------CCCCEEEEEeCCCcEEEEe
Q 009022 259 ----------------------GWH---GPRT-----------WRMLYGMDIN--------PEKGVVLVADNFGFLYLVD 294 (546)
Q Consensus 259 ----------------------~~~---~~~~-----------~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d 294 (546)
.+. ...+ ...+..+.|. |+...|+++..+|.+.+..
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 000 0000 0012233332 3555666666666666654
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC---------eEEEEECCCCCCCceeeec-CCCCcEEEEEE
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH---------FARIWDIRRLEAGSSLCDL-PHKRVVNSAYF 364 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~ 364 (546)
-.+...+. ....+..+..+.|++ +|.+|++++.+. .|.+|.. .+..+..+ -....|++++|
T Consensus 246 ~eND~~Pv----v~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp----~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 246 SENDPEPV----VVDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP----YGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred hcCCCCCe----EEecccEeecceecC-CCcEEEEccCcccccCccccceEEEecc----chhheEEEecCCceeeeeEE
Confidence 33322211 112224688899999 999999988542 4555543 23333333 34567999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECC
Q 009022 365 SPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 365 ~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
-..|-.++.+ .|+.|.+=+++
T Consensus 317 Eg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 317 EGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cCCceEEEEE-ecceEEEEeec
Confidence 7777666665 58888887775
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=2.3e-07 Score=85.74 Aligned_cols=263 Identities=18% Similarity=0.240 Sum_probs=159.4
Q ss_pred CCeEEEEEcCCCCcEEEEEcCC---------------CcEEEEeCCCCceeEEeccc-----------------------
Q 009022 171 RRVTCLEFHPTNNHILLSGDKK---------------GQVGVWDFYKVSEKIVYGNI----------------------- 212 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~----------------------- 212 (546)
..|.-+.|+|.+ +||.+=+.. ..+.|||+.++..+..+...
T Consensus 72 ~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 72 PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 368889999998 788886543 35999999776544333100
Q ss_pred ------C---------------CCceEEEEEecC-CCCEEEE-----EeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 213 ------H---------------SCIVNNIRFNPT-NDGTVYA-----ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 213 ------~---------------~~~v~~~~~~~~-~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
| ...|....|+|. +...|+. .+..+.+++|.+..+..+....+-..
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~------- 223 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV------- 223 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------
Confidence 1 123555556665 1222333 23356677777765555444332211
Q ss_pred ccceEEEEecCCCCEEEEEe-----------CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE--eC
Q 009022 266 WRMLYGMDINPEKGVVLVAD-----------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC--GN 332 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~--~~ 332 (546)
.-..+.|.+.|.+|++-. ....++|+++........ ....++|..++|.| .++.+++. -.
T Consensus 224 --~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~----~~~~~pVhdf~W~p-~S~~F~vi~g~~ 296 (561)
T COG5354 224 --SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE----KDLKDPVHDFTWEP-LSSRFAVISGYM 296 (561)
T ss_pred --cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee----ccccccceeeeecc-cCCceeEEeccc
Confidence 123567888888777631 225778888874333221 13345899999999 65555443 46
Q ss_pred CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCCCCCCCcceeeccCCcccCCc
Q 009022 333 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP 409 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (546)
...+.++|++. . +........=+.+.|+|.+++++.++.+ |.|-+||...... . ...+.+. ..
T Consensus 297 pa~~s~~~lr~----N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~-------~-~~~~~~~-n~ 362 (561)
T COG5354 297 PASVSVFDLRG----N-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK-------V-AGAFNGL-NT 362 (561)
T ss_pred ccceeeccccc----c-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE-------E-EEEeecC-Cc
Confidence 88899999963 2 2223344556778999999999998876 6799999764322 1 1111111 11
Q ss_pred eeEEecCCCCCCceeEEeeeeeecCCC---CcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 410 FRAEWDPKDPSESLAVIGRYISENYNG---AALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 410 ~~~~~~p~~~~~~~~~~g~~~~~~~~g---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
..+.|+|+ |+|+...+++ ..|..|.||++.... +. ..+.+ .|.|.|++..+.+
T Consensus 363 s~~~wspd---------~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f--------el~~~-~W~p~~~~~ttsS 418 (561)
T COG5354 363 SYCDWSPD---------GQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF--------ELTNI-TWDPSGQYVTTSS 418 (561)
T ss_pred eEeeccCC---------ceEEEecCCCcccccCcceEEEEecCch-hh--------hhhhc-cccCCcccceeec
Confidence 24679998 6766655555 358899999995432 22 23334 5777777766655
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.02 E-value=6.6e-09 Score=92.85 Aligned_cols=160 Identities=22% Similarity=0.243 Sum_probs=109.3
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEECCCCce----eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEE
Q 009022 218 NNIRFNPTNDGTVYAASSDGTVSCTDLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 293 (546)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 293 (546)
..+..++. +.+|+.+..+....++++..... ........ ..+++.|..+.....++...|.++.+
T Consensus 66 ~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----------~~~ai~~~~~~~sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 66 ALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----------RPTAISFIREDTSVLVADKAGDVYSF 134 (390)
T ss_pred cccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----------CcceeeeeeccceEEEEeecCCceee
Confidence 33445555 77777777777766666654332 11221111 24566666677777777666666666
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEE
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 373 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 373 (546)
|+-.-.. .......+|-..++.++|+| ++++|+++..|..|++-..........+ .+||...|..++..++ ..|++
T Consensus 135 di~s~~~-~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 135 DILSADS-GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred eeecccc-cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC-ceeee
Confidence 6544221 22224445666899999999 9999999999999999887643333332 2489999999999864 45899
Q ss_pred EeCCCcEEEEECCCCCCCC
Q 009022 374 TSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 374 ~s~dg~i~vwd~~~~~~~~ 392 (546)
+|.|++|++||+.+|+++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred cCCCCcEEEEecccCCccc
Confidence 9999999999999998754
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=1.8e-09 Score=103.43 Aligned_cols=297 Identities=16% Similarity=0.218 Sum_probs=175.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.+.+.++..+|.| +-+|.++.-| +.+.|+.......... ....-.|-.+.|+|.. ..+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 4578889999999 5577777665 7777877655444432 2223457788888763 233344444455678988643
Q ss_pred cee-eeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 248 LAL-SLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 248 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
... ..+.. +.+...++.+.|.|+ ...+++++.|-.+..||++....... ....-......++|+-.++.
T Consensus 102 s~~aIef~l-------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y--s~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 102 SSNAIEFVL-------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY--STSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred CccceEEEE-------ecCccceeccccCCCCCcceeeccccccceeeeccCCCccee--eeecccccCceeeecccCcc
Confidence 221 12222 222346999999986 45788899999999999998765432 22222235678899885666
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
.+|+ +..+.|++||++.+.. .+..+ +|...|+.+.|.. ....+.+++.|++|++||......... +..
T Consensus 173 vlas-shg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~-------~~v 242 (1081)
T KOG0309|consen 173 VLAS-SHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK-------RTV 242 (1081)
T ss_pred hhhh-ccCCceEEEeccCCCc--ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc-------eec
Confidence 6655 5577899999997655 33333 6888899999976 556788999999999999865432111 001
Q ss_pred cccCCceeEEecCCCCCCceeEE--eeeeeecCCCCcCcceEEEECCch-hhhHhhcCCCCCcccceeeecC--------
Q 009022 404 NRHLTPFRAEWDPKDPSESLAVI--GRYISENYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHP-------- 472 (546)
Q Consensus 404 ~~~~~~~~~~~~p~~~~~~~~~~--g~~~~~~~~g~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~s~-------- 472 (546)
......+...+-|-.....+... |..+.. -.-++....|+..++ +.+.+|.||. ..|... -|-.
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~---~~c~n~d~e~n~~~~~~pVh~F~GH~-D~V~eF-lWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ---LRCENSDLEWNVFDLNTPVHTFVGHD-DVVLEF-LWRKRKECDGDY 317 (1081)
T ss_pred cccCcceeccccccCceeEeccccCCeeeee---ccccchhhhhccccCCcceeeecCcc-hHHHHH-hhhhcccccCCC
Confidence 11111123333333221111110 110000 001122223444433 5677777776 333322 2322
Q ss_pred --CCcEEEEec-CCcEEEEcCCC
Q 009022 473 --RDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 473 --~~~~l~sgs-dg~i~vwd~~~ 492 (546)
..-.|+|-+ |..+++|-+.+
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CccceeEEEeecCCceEeeeccH
Confidence 223699999 99999999865
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.02 E-value=2.1e-07 Score=90.06 Aligned_cols=265 Identities=19% Similarity=0.176 Sum_probs=153.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
..++.++.++.+..+|..+++...... ....+.+.-.. . +..++.++.+|.|..||..+|+.+.............
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 357778889999999999988877653 22222221111 2 4577778889999999999999887765433211000
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC----cEEEEEECC-CCCCEEEEEeCCCeEEE
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS----KVVGLHCNP-IQPELLLSCGNDHFARI 338 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~i~~~~~~p-~~~~~l~~~~~dg~i~i 338 (546)
. ..+... .+..++++..++.+..+|+.+++............. .+..+.-+| ..+..+++++.+|.++.
T Consensus 182 ~----~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 182 G----SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred C----CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 0 001111 134677888889999999988765432211100000 000111111 02457777888999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 418 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (546)
||..+++. +....... ...+.. .+..+++++.+|.|..+|..+|+.+..... .... .
T Consensus 256 ~d~~tG~~---~W~~~~~~-~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~------~~~~-----~------ 312 (377)
T TIGR03300 256 LDLRSGRV---LWKRDASS-YQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDE------LKYR-----Q------ 312 (377)
T ss_pred EECCCCcE---EEeeccCC-ccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccc------ccCC-----c------
Confidence 99976543 22222111 112222 567788888999999999998875322110 0000 0
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEE
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIW 488 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vw 488 (546)
.....+.+..+. .++.+|.|+++|..+|+.+.++..+.......- ++ .+++ |+.++ ||.|..|
T Consensus 313 -~ssp~i~g~~l~---~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~~-~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 -LTAPAVVGGYLV---VGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-VV-VGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred -cccCEEECCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-EE-ECCE-EEEEeCCceEEEe
Confidence 001112244444 578889999999999999887765442211111 22 2344 55555 9999876
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=1.6e-07 Score=100.84 Aligned_cols=217 Identities=12% Similarity=0.153 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC---------------CCceEEEEEecCCCCEEEEEeCC
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH---------------SCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
....|++.++++.++++-...+.|+++|+.++........+. -.....++|+|+++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 457899999874444544556789999987754322211110 11236799999647777888888
Q ss_pred CeEEEEECCCCceeeeeecCCC-----C-CCCCCcccceEEEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcce-----
Q 009022 237 GTVSCTDLETGLALSLMNVNPN-----G-WHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEA----- 304 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~----- 304 (546)
+.|++||..++.... +..... . ............|+++|+++.|+ +-..++.|++||+.++......
T Consensus 705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 999999998775432 211100 0 00011122467899999998555 4566789999999865421000
Q ss_pred -----EEeec--------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-----------cCCCCcEE
Q 009022 305 -----ILIHR--------KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-----------LPHKRVVN 360 (546)
Q Consensus 305 -----~~~~~--------~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~ 360 (546)
..... ......++++++ ++.++++-+.++.|++||..+......... .+.-....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 011246889999 888888888999999999865332111100 01123567
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 361 SAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 361 ~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.|+++++|+++++-+.+++|++||+.+++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999999988999999999988764
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=2.6e-06 Score=75.89 Aligned_cols=218 Identities=12% Similarity=0.154 Sum_probs=141.8
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcC---CCcEEEEeCCC--CceeEEec-ccCCCceEEEEEecCCCCEEEEEeC-CCe
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYK--VSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASS-DGT 238 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~-dg~ 238 (546)
+-.+.+.++-|+|+|++ +.|.++-. +|.|..|.+.. +.....-. .....+-+.++++++ +++|+++.. -|.
T Consensus 35 ~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~ 112 (346)
T COG2706 35 LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGS 112 (346)
T ss_pred hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC-CCEEEEEEccCce
Confidence 34577788999999999 56776643 57888888775 33222111 122334488999999 888888765 588
Q ss_pred EEEEECCC-Cceeee---eecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 239 VSCTDLET-GLALSL---MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 239 i~iwd~~~-~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
|.++-++. |..... +.......+.......+....+.|++++|++.+ ....|.+|++..+............+..
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 99999865 433222 111111000111111377888999999999876 3458999999876544332222344556
Q ss_pred EEEEEECCCCCCEEEEEe-CCCeEEEEECCCCC-C---Cceeeec----CCCCcEEEEEEeCCCCEEEEEeC-CCcEEEE
Q 009022 314 VVGLHCNPIQPELLLSCG-NDHFARIWDIRRLE-A---GSSLCDL----PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIW 383 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~-~---~~~~~~~----~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vw 383 (546)
.+.|.|+| ++++..+.. .+++|-+|...... . .+.+..+ ....+...|.++|+|++|.++.. ...|.+|
T Consensus 193 PRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 193 PRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred cceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 88999999 888877665 58999999987531 1 1122222 23456778999999999988754 3468888
Q ss_pred ECC
Q 009022 384 DSI 386 (546)
Q Consensus 384 d~~ 386 (546)
.+.
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 765
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=4.6e-07 Score=78.09 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=137.5
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009022 220 IRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART 297 (546)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 297 (546)
++.+++ |++||..- |..|.|=..+.. ..+.....+..+. ..-..++|+||+..||.+...|+|++||+..
T Consensus 3 ~~~~~~-Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSD-GKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCC-CcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 444555 66665544 566666555433 2223333333221 1367899999999999999999999999975
Q ss_pred CCCCcceE---EeecCCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEECCCC--CCCc---eeeec-CCCCcEEEEE
Q 009022 298 NSRSGEAI---LIHRKGSKVVGLHCNPIQ-----PELLLSCGNDHFARIWDIRRL--EAGS---SLCDL-PHKRVVNSAY 363 (546)
Q Consensus 298 ~~~~~~~~---~~~~~~~~i~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~~--~~~~---~~~~~-~~~~~v~~~~ 363 (546)
........ ........|..+.|.+.. ...|++-...|.++-|-+..+ +..+ .+... .+...|.++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 32211000 001112356777775522 235666777888887776321 2222 22222 3567899999
Q ss_pred EeCCCCEEEEEeCCC-----------cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeee
Q 009022 364 FSPSGSKILTTSQDN-----------RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 432 (546)
Q Consensus 364 ~~p~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 432 (546)
++|..++|++|+... -+..|.+-++..- - .....-. .-
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py---y---------------k~v~~~~----------~~--- 203 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY---Y---------------KQVTSSE----------DD--- 203 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc---E---------------EEccccC----------cc---
Confidence 999988888876532 1344443322110 0 0000000 00
Q ss_pred cCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceE
Q 009022 433 NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 505 (546)
Q Consensus 433 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~ 505 (546)
......+..+|.+-+.+.. ...+.....|..+ ..||||.+||+.. +|.|.||++.+..+.+....+..+
T Consensus 204 --~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~km-SlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 204 --ITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKM-SLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred --ccccccccceeeccceeee-eccccCCCceEEE-EECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 0000011223333222111 1123344677777 8999999999999 999999999999888887766544
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=5.4e-07 Score=83.36 Aligned_cols=245 Identities=11% Similarity=0.021 Sum_probs=141.4
Q ss_pred EcCCCCcEEEEEc---------CCCcEEEEeCCCCceeEEecccC------CCceEEEEEecCCCCEEEEEe-C-CCeEE
Q 009022 178 FHPTNNHILLSGD---------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNPTNDGTVYAAS-S-DGTVS 240 (546)
Q Consensus 178 ~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~-~-dg~i~ 240 (546)
++|+|..+.++.+ .+..|.|||+.+.+....+..+. ......++++|+ +++|+... . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEE
Confidence 9999955555555 57899999999998887764221 112347889999 88888665 3 68999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc-ce-EEeecCCCcEE-EE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG-EA-ILIHRKGSKVV-GL 317 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~~~~i~-~~ 317 (546)
+.|+.+++.+..+..+.. ..-+..+++..+ +-+.||......+....... .. ..++....++. .-
T Consensus 132 VvD~~~~kvv~ei~vp~~----------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDC----------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred EEECCCCcEEEEEeCCCC----------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 999999999988765321 111112222222 12233333333222211100 00 01111000000 00
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCC--CceeeecC--------CCCcEEEEEEeCCCCEEEEEe----------CC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLP--------HKRVVNSAYFSPSGSKILTTS----------QD 377 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~p~~~~l~s~s----------~d 377 (546)
.+.+.++.++.+... |+|++.|+..... ...+..+. ..+.+.-++++|+++.+++.. ..
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 334436666666655 9999999643221 11121111 233444599999999888743 22
Q ss_pred CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee-eeeecCCCCcCcceEEEECCchhhhHhh
Q 009022 378 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQLVAEV 456 (546)
Q Consensus 378 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 456 (546)
+.|.++|..+++.+.. ... ...+..++++|+ |+ ++.. +...++.|.|+|+.+++.+.++
T Consensus 279 ~~V~ViD~~t~kvi~~-------i~v--G~~~~~iavS~D---------gkp~lyv--tn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRK-------IEL--GHEIDSINVSQD---------AKPLLYA--LSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEE-------EeC--CCceeeEEECCC---------CCeEEEE--eCCCCCcEEEEECcCCeEEeee
Confidence 5799999988775321 111 123457888888 55 2221 2335678999999999988877
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.4e-08 Score=90.86 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=106.0
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 348 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 348 (546)
...+..++.++++|++.......+++.+......+...........+++.+.. ....+..+..-|-++-+|+-......
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccC
Confidence 44455788899999999999888888776554222222222222334444444 33344444334444444443222244
Q ss_pred eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee
Q 009022 349 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 428 (546)
Q Consensus 349 ~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~ 428 (546)
....++|-+.++.|+|+||+++|+++..|..|+|-....-.
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------------------------------------- 184 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------------------------------------- 184 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---------------------------------------
Confidence 55556999999999999999999999999999886542100
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhc-CCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
.+..+. ||. .-|..+ +.-++ +.|++|| |++|++||+.+|+.+.++...+
T Consensus 185 -----------------------~IesfclGH~-eFVS~i-sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 185 -----------------------VIESFCLGHK-EFVSTI-SLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred -----------------------chhhhccccH-hheeee-eeccC-ceeeecCCCCcEEEEecccCCcccccchhH
Confidence 001122 332 445555 55544 4577777 9999999999999998776543
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=1.6e-06 Score=91.59 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=141.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcC------CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDK------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-- 235 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-- 235 (546)
..+. +.+.-..|+|-.|| .++|+.+. -+.||||+-+ +...... ..-.+--.+++|.|. |++||+...
T Consensus 204 ~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs-G~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS-GNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC-CCEEEEEEEcC
Confidence 4455 67778899999999 68887764 2589999976 3332222 223334467899999 999988765
Q ss_pred -CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 236 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 236 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
...|.+|.- +|-....+...... ....|..+.|++++..||+...+. |.+|-..+.....+..........+
T Consensus 279 ~~~~VvFfEr-NGLrhgeF~l~~~~-----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 279 DRHDVVFFER-NGLRHGEFTLRFDP-----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred CCcEEEEEec-CCcEeeeEecCCCC-----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 345666663 45444555544211 112589999999999999987655 9999888765433332222233345
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECC----CCC---------------------------CCce--eeecCCCCcEEE
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIR----RLE---------------------------AGSS--LCDLPHKRVVNS 361 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~----~~~---------------------------~~~~--~~~~~~~~~v~~ 361 (546)
..+.|+|.+...|.....+|.+..+++. ... .+.+ ...+....+|..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 5699999777778877776766554431 110 0011 111234678999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 362 AYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
++|++++..+++-..||.|.+|......
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 9999988889999999999999865543
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=5.7e-07 Score=82.36 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=135.8
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc----------cCCCceEEEE-EecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 179 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----------IHSCIVNNIR-FNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 179 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
+.+|.+++++. .|.|.+||..+......-.. ....+..-+. |++.++.+++..+. |...+.+.-.+
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 45676666654 46799999887543322111 0111222222 55556889999887 77888877666
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
..++.-. . ..|.-..+..++.-++.|..|| .+-++|..++... .....-+.|.++..+| ++.+
T Consensus 352 ~~iqv~~---~--------~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k----r~e~~lg~I~av~vs~-dGK~ 415 (668)
T COG4946 352 YSIQVGK---K--------GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK----RIEKDLGNIEAVKVSP-DGKK 415 (668)
T ss_pred eeEEcCC---C--------CceEEEEEccCCcceEEeccCCceEEEEecCCceEE----EeeCCccceEEEEEcC-CCcE
Confidence 5554321 1 1366677777888899999999 9999999986532 3344455899999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC----cEEEEECCCCCC
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN----RLRIWDSIFGNL 390 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg----~i~vwd~~~~~~ 390 (546)
++++.....|.++|+.++.. .+......+.|+.+.|||++++||-+--+| .|+++|+..++.
T Consensus 416 ~vvaNdr~el~vididngnv--~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNV--RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCceEEEEEEecCCCe--eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999999999999987654 232335678899999999999999876655 589999988765
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.9e-07 Score=84.39 Aligned_cols=267 Identities=10% Similarity=0.086 Sum_probs=154.0
Q ss_pred EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe
Q 009022 195 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 195 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 274 (546)
...|+.......... ....-.=+-+.|||- |.||++--..| |.+|--.+-..++.+..+ .|.-+.|
T Consensus 192 svfwN~~~n~p~~ie-~RenWTetyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-----------~Vq~idf 257 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIE-ERENWTETYVRWSPK-GTYLVTFHKQG-IALWGGESFDRIQRFYHP-----------GVQFIDF 257 (698)
T ss_pred EEEccccCCchhhhh-hhhcceeeeEEecCC-ceEEEEEeccc-eeeecCccHHHHHhccCC-----------Cceeeec
Confidence 455665443221111 123334577999999 99999988766 889976655555554322 3888999
Q ss_pred cCCCCEEEEEeC-----------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 275 NPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 275 ~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
||..+||++-+. ...+.|||++++...............-.-+.|+. +..++|.-.. ..|.||+..+
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCc
Confidence 999999998532 25899999999987665544322222344578998 8899887765 5688998754
Q ss_pred CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCCCCCCC------------------------
Q 009022 344 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGNLDSPS------------------------ 394 (546)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~------------------------ 394 (546)
...... .. -.-..|....|+|.+++||-=+.. ..+.+-.+.+++.+...
T Consensus 336 f~lld~-Ks-lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 336 FMLLDK-KS-LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred eeeecc-cc-cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEE
Confidence 221100 00 123456677777777766643221 12333333222211100
Q ss_pred cc-------------eeec-------cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc----h
Q 009022 395 RE-------------IVHS-------HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT----G 450 (546)
Q Consensus 395 ~~-------------~~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~----~ 450 (546)
+. +... ....-.-..+..+|.|.+...++.. .-....++.+|.+.+ .
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~---------g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVIS---------GNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEE---------ccccccceeEEEeecCCCch
Confidence 00 0000 0000111224578999843322222 223346788888773 3
Q ss_pred hhhHhhcCCCCCcccceeeecCCCcEEEEec----CCcEEEEcCCC
Q 009022 451 QLVAEVMDPNITTISPVNKLHPRDDVLASGS----SRSIFIWRPKE 492 (546)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs----dg~i~vwd~~~ 492 (546)
+++..+.. .....+ .|+|.|++++.+. .|.+.++|..-
T Consensus 485 ~lVk~~dk---~~~N~v-fwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 485 SLVKELDK---KFANTV-FWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhhhhhcc---cccceE-EEcCCCcEEEEEEecccccceEEEecch
Confidence 44555533 233445 7999999998854 58999999873
No 291
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.9e-08 Score=86.03 Aligned_cols=272 Identities=15% Similarity=0.114 Sum_probs=155.7
Q ss_pred EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe
Q 009022 195 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 195 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 274 (546)
+++.+..+..... +...|...|..++|+|.+..++..++.+..|+|.|+++......+..+. .+++++|
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----------~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----------QIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----------Cceeeee
Confidence 4555544444433 4467888999999999955689999999999999999988887776553 4899999
Q ss_pred cCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC-----CCCEEEEEeCCCeEEEEECCCCC-CC
Q 009022 275 NPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-----QPELLLSCGNDHFARIWDIRRLE-AG 347 (546)
Q Consensus 275 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~-----~~~~l~~~~~dg~i~iwd~~~~~-~~ 347 (546)
.-+ .++|.+|..+|.|.+||++........+.......+|..++.-+. .+.+|+.... .+..|.+.-.. ..
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC
Confidence 875 567888889999999999986654333222222235555544331 2334443332 25566654222 12
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-c---EE---E-EECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-R---LR---I-WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-~---i~---v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
..+..++..+...++..++..+.++..-..+ . ++ + -|-.+|..+...+.... .............+.+.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~ai~~~~~- 399 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQAIRAVED- 399 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCcccccccccceecccc-
Confidence 2223345567777888887555544433221 0 00 0 01111111110010000 000000000112222221
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC-cEEEEecCCcEEEEcCCC
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-DVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~sgsdg~i~vwd~~~ 492 (546)
..++. ..|...+.+.+||..+++.++++... ..+..+.-+..+| .||++=.|..++||....
T Consensus 400 -------nn~iv--~~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 400 -------NNYIV--VVGDSTNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred -------ccEEE--EecCCcceeEEeccchhheeeecccC--cceeecceeecCCcchhhheecceEEEEecCC
Confidence 12222 15667889999999999999988655 4555443344443 477777789999987653
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=3.7e-07 Score=78.66 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc------CCCceEEEEEecCC-----CCEEEEEeCCCeEEE
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTN-----DGTVYAASSDGTVSC 241 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~i 241 (546)
=+-++|||++ .+||.+...|+|+++|+..... ..+... -...|..+.|.+.. ...|++-...|.++-
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4578999999 7999999999999999976432 232222 23567777786542 235666777788877
Q ss_pred EECCCC-----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 242 TDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 242 wd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
|-+..+ +....+.+... ....|.++.++|..++|++|+.... ..+ . .......+++
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~------yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~--~-----s~a~~~GLta 184 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSH------YPHGINSAVYHPKHRLLLVGGCEQN------QDG--M-----SKASSCGLTA 184 (282)
T ss_pred EEEEcccCCcceeeEEEEeccc------CCCceeEEEEcCCCCEEEEeccCCC------CCc--c-----ccccccCceE
Confidence 765332 22233333211 1124999999999999988865322 000 0 0000112222
Q ss_pred EEECCCCCCEEE-EEeCCCe------EEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 317 LHCNPIQPELLL-SCGNDHF------ARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 317 ~~~~p~~~~~l~-~~~~dg~------i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
-......+.+.. +...++. ..+|.+-+ ...+.. ......|..|..+|+|..||+...+|.|.+|++.+-
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 222211112221 1111211 12333211 111111 135678999999999999999999999999999765
Q ss_pred CC
Q 009022 389 NL 390 (546)
Q Consensus 389 ~~ 390 (546)
++
T Consensus 262 ~~ 263 (282)
T PF15492_consen 262 RL 263 (282)
T ss_pred hh
Confidence 54
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.3e-08 Score=97.83 Aligned_cols=212 Identities=16% Similarity=0.217 Sum_probs=138.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..+.||+.+|+.+.|+|+.+-+|++++.|..+..||+.+..........-......|+|+-.++ .+++.+..+.|.+||
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc-chhhhccCCceEEEe
Confidence 4578999999999999999889999999999999999987655544344445667899998734 455556667899999
Q ss_pred CCCCce-eeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 244 LETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
++.|.. +..++.+. ..++.+.|..- ...+.+.+.||+|.+||............ ....+|..-.+.|
T Consensus 187 ~r~gs~pl~s~K~~v---------s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~P 255 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHV---------SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLP 255 (1081)
T ss_pred ccCCCcceEEecccc---------eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccccc
Confidence 997754 33333322 24777777652 45678889999999999876543322212 1222555555666
Q ss_pred CCCCEEEE-EeCCCeEEEEECCCCC-------CCceeeec-CCCCcEEEEEEeCC----------CCEEEEEeCCCcEEE
Q 009022 322 IQPELLLS-CGNDHFARIWDIRRLE-------AGSSLCDL-PHKRVVNSAYFSPS----------GSKILTTSQDNRLRI 382 (546)
Q Consensus 322 ~~~~~l~~-~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~~~v~~~~~~p~----------~~~l~s~s~dg~i~v 382 (546)
....+++. .-.+..+.+++.++.. ..+.+..+ +|...|....|-.. .-.|+|=+.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 22222221 1112244444333211 22344444 89888877766432 236999999999999
Q ss_pred EECCC
Q 009022 383 WDSIF 387 (546)
Q Consensus 383 wd~~~ 387 (546)
|-+..
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 98753
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.2e-06 Score=84.79 Aligned_cols=191 Identities=9% Similarity=0.089 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCC--CeEEEEECC
Q 009022 172 RVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSD--GTVSCTDLE 245 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d--g~i~iwd~~ 245 (546)
.+....|+|+|.++++..+. ...|.++|+.+++...... ..+......|+|+ ++.| ++.+.+ ..|.++++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKD-GSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCC-CCEEEEEEccCCCcEEEEEECC
Confidence 77889999999543543322 4579999998876655542 4555667889999 6554 444444 468888988
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-C--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
++...... .... ......|+|+|+.|+..+.. + .|+++|+.++..... ... +.. ...|+|
T Consensus 266 ~g~~~~LT-~~~~---------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t~~--g~~--~~~~SP- 328 (419)
T PRK04043 266 TKTLTQIT-NYPG---------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--VFH--GKN--NSSVST- 328 (419)
T ss_pred CCcEEEcc-cCCC---------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--ccC--CCc--CceECC-
Confidence 77644322 1111 12344699999988877642 3 688888877654221 111 111 248999
Q ss_pred CCCEEEEEeCC---------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-Cc--EEEEECC
Q 009022 323 QPELLLSCGND---------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-NR--LRIWDSI 386 (546)
Q Consensus 323 ~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-g~--i~vwd~~ 386 (546)
++..|+..+.. ..|.+.|+..+.. ..+. .........|+|+|+.|+..+.. +. +.+.++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT---ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC---CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 88877766543 3688888865432 2221 12233458899999988776543 22 4455553
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-08 Score=84.90 Aligned_cols=240 Identities=16% Similarity=0.246 Sum_probs=146.2
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc-e----eeeeecCCCCC---CCCCcccceEEEEecCCC--CEEE
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-A----LSLMNVNPNGW---HGPRTWRMLYGMDINPEK--GVVL 282 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~----~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~ 282 (546)
....|+++.|... |.+|++|...|.|.+|.-.... + ...+..+...+ ........|..|.|..++ ..++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4567899999988 9999999999999999765433 1 11122221111 111222347778886543 4678
Q ss_pred EEeCCCcEEEEeCCCCCCC---------------c-------c-----------eE-------EeecCCCcEEEEEECCC
Q 009022 283 VADNFGFLYLVDARTNSRS---------------G-------E-----------AI-------LIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 283 ~~~~dg~i~i~d~~~~~~~---------------~-------~-----------~~-------~~~~~~~~i~~~~~~p~ 322 (546)
..+.+.+|++|.+...... . . .+ ....|...|.++.++.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 8889999999987643100 0 0 00 1123445678888887
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeec-CC-----CCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH-----KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-----~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
+...++++ .|=.|.+|++.-......+... +| ..-|++..|+| ....+.-++..|.|++-|++...+...
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn-- 259 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN-- 259 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC--
Confidence 66667665 4778999998654332222222 33 24588899999 566677777889999999874332110
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC-chhhhHhhcCCCCCcccceeeecCCC
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
+ -+++... .+--+ .+...-...|..+ .|+++|
T Consensus 260 --------------------~-------------------------~klfe~~~D~v~~-~ff~eivsSISD~-kFs~ng 292 (460)
T COG5170 260 --------------------S-------------------------KKLFELTIDGVDV-DFFEEIVSSISDF-KFSDNG 292 (460)
T ss_pred --------------------c-------------------------hhhhhhccCcccc-hhHHHHhhhhcce-EEcCCC
Confidence 0 0000000 00000 0111112556666 899999
Q ss_pred cEEEEecCCcEEEEcCCCC-Cccceeeccce
Q 009022 475 DVLASGSSRSIFIWRPKEK-SELVEQKEEMK 504 (546)
Q Consensus 475 ~~l~sgsdg~i~vwd~~~~-~~~~~~~~~~~ 504 (546)
+|+++-+=-+|+|||+... .++.++..|..
T Consensus 293 ryIlsRdyltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 293 RYILSRDYLTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred cEEEEeccceEEEEecccccCCceeechHHH
Confidence 9999988899999999865 46777655543
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=1.1e-06 Score=74.61 Aligned_cols=267 Identities=13% Similarity=0.047 Sum_probs=151.8
Q ss_pred CCcEEEEeCCCCc-eeEEecccCCCceEEEEEecC----CCCEEEEEeCCCeEEEEECCCCceeeee-ecCCCCCCCCCc
Q 009022 192 KGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPT----NDGTVYAASSDGTVSCTDLETGLALSLM-NVNPNGWHGPRT 265 (546)
Q Consensus 192 d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 265 (546)
...+-+|++.+.. ....+. ..+.|.|. ...+|+.|+..|.+.+|...+.+....+ ..+.....-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~--- 120 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL--- 120 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh---
Confidence 3456777766543 122221 33444442 1568899989999999999876544332 122111110
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 345 (546)
+...+ .....+..++.|.+++++++....... ..+...-.+.++++++ ++.++++.+....|..|.+....
T Consensus 121 ---~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 121 ---VKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred ---hhhhc--ccccceeeccCCcceeEEEEecCcccc---eeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc
Confidence 11111 122346666777777777766543222 2222223488999999 99999999999999999987533
Q ss_pred CCce-eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCce-eEEecCCCCCCce
Q 009022 346 AGSS-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESL 423 (546)
Q Consensus 346 ~~~~-~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~ 423 (546)
.... +........=.+..|+.....+|++..||++.|||++.... |..... ..-..+...+ .+.|+|...-..+
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t--pm~~~s--strp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT--PMAEIS--STRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc--chhhhc--ccCCCCCCceEEEEecCCCcceEE
Confidence 2111 12223444556789999999999999999999999986543 111111 1111222233 3567775332222
Q ss_pred eEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC-------CCCCcccceeeecCCCcEEEEecCCcEEEEcCCC
Q 009022 424 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-------PNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 424 ~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~ 492 (546)
.. .-.-+.+.|.|++++...+.+.. |....+..- .|+.++..+.+.+.-.+.=|++.+
T Consensus 268 f~----------sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt-~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 268 FI----------SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT-NFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EE----------ecCcceEEEEEcccCceeeEEecCccccccccccccccc-cccCCCcccccccchhhheeeccc
Confidence 22 23346689999998876554432 222223333 466666555555533444455443
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=5e-08 Score=82.12 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=99.7
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE-ecccCCCceEEEEEecCCCCEEEEEeC-----CCeE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASS-----DGTV 239 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i 239 (546)
+..|+++=.+-+.+-.+ .-++++..||.+.+.+.+....... +...|.+ -.+.+.... ++.+.++.. -+..
T Consensus 85 ~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~-~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 85 LAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH-GNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec-ccEEecCCcceEeeccce
Confidence 33455443343344344 3499999999999999876221111 1111211 122222233 444444332 1334
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
+.|+++..+...... .....|.+++-+|. .+.+++|+.+|.+.+||.+....+...+.. |..+|..+.
T Consensus 162 ~a~~~~p~~t~~~~~---------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--hk~~i~eV~ 230 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSK---------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--HKAEIWEVH 230 (319)
T ss_pred eeecccccccccccc---------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--hhhhhhhee
Confidence 555554332221111 11123788888885 456777899999999999987655544444 444899999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
|+|.++..|++++.||.+.-||..+
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999999999863
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=3.4e-06 Score=82.00 Aligned_cols=274 Identities=15% Similarity=0.094 Sum_probs=156.2
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC---------ce-EEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.+++++.++.|.-+|..+++........... .+ ..+.. . +..++.++.+|.|..+|..+|+.+....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 5677777889999999888877765322110 00 01122 2 5577778889999999999999887765
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC-CCCEEEEEeCC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGND 333 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~d 333 (546)
..... ..+... .+..+++++.++.|+.+|..+++........... ..+.. ..+|. .+..++.++.+
T Consensus 148 ~~~~~---------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~-~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 148 VAGEA---------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS-LTLRG-ESAPATAFGGAIVGGDN 214 (394)
T ss_pred CCCce---------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc-ccccC-CCCCEEECCEEEEEcCC
Confidence 53221 000111 2456777888999999999998765433211000 00000 00110 12356667788
Q ss_pred CeEEEEECCCCCCCceeeecCCC--C---cEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 334 HFARIWDIRRLEAGSSLCDLPHK--R---VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~~~~~~~~--~---~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
|.+..+|..+++..-........ . ....+..+| .+..+++++.+|.+..+|+.+|+.+.... +..
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-------~~~- 286 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-------YGS- 286 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-------CCC-
Confidence 99999988765542111110000 0 011112233 35567777789999999999887532110 000
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcE
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 485 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i 485 (546)
+ ....+.+..+. .+..++.|..+|..+|+.+............+. .+ .+.+|+.++ +|.|
T Consensus 287 ---------~----~~~~~~~~~vy---~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp-~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 287 ---------V----NDFAVDGGRIY---LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP-VL--YNGYLVVGDSEGYL 347 (394)
T ss_pred ---------c----cCcEEECCEEE---EEcCCCeEEEEECCCCcEEEcccccCCCcccCC-EE--ECCEEEEEeCCCEE
Confidence 0 01122233332 356788999999999986654322111111111 12 245566666 9999
Q ss_pred EEEcCCCCCccceeec
Q 009022 486 FIWRPKEKSELVEQKE 501 (546)
Q Consensus 486 ~vwd~~~~~~~~~~~~ 501 (546)
.+.|..+|+.+.+.+.
T Consensus 348 ~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 348 HWINREDGRFVAQQKV 363 (394)
T ss_pred EEEECCCCCEEEEEEc
Confidence 9999999998877754
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.79 E-value=1.8e-08 Score=61.15 Aligned_cols=38 Identities=29% Similarity=0.608 Sum_probs=35.2
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 199 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd 199 (546)
.+++++.+|.+.|++|+|+|++ .+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3568899999999999999998 7999999999999997
No 300
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.75 E-value=3.5e-09 Score=100.13 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=139.9
Q ss_pred CCCeEEEEEcCCCC-cEEEEEcCCCcEEEEeCCCCcee-EEecccCCCceEEEEEecCCCCEEEEEeC----CCeEEEEE
Q 009022 170 SRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGTVSCTD 243 (546)
Q Consensus 170 ~~~V~~l~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd 243 (546)
...+.|+++.-+.+ .+++.|..+|.|.+-.+....-. ..+..+|..+.++++|++-+.+.||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34677887766553 57899999999999988764433 44557899999999999975667777632 56799999
Q ss_pred CCCCc--eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 244 LETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
+.++- +.....+.. .......+++|..+.+++++|.....+.++|++........+. ...+..+.+.|
T Consensus 136 i~s~ltvPke~~~fs~------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp 205 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDP 205 (783)
T ss_pred cccccCCCcccccccc------ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecC
Confidence 99872 222222211 1112356888998999999999999999999985432221111 11567788888
Q ss_pred CCCCEEEEEeCCCeEEEEE-CCCCCCCceeeecCCC-----CcEEEEEEeC-CCCEEEEEeC-CCcEEEEECCC
Q 009022 322 IQPELLLSCGNDHFARIWD-IRRLEAGSSLCDLPHK-----RVVNSAYFSP-SGSKILTTSQ-DNRLRIWDSIF 387 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~-----~~v~~~~~~p-~~~~l~s~s~-dg~i~vwd~~~ 387 (546)
..++++++-. ||.|.+|| .++.+. .+....|. ..+..++|+| ...++++.+. .++|+++++..
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7788888765 99999999 443322 33222222 3489999999 3334555554 57899999863
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.9e-07 Score=80.61 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=72.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..+.+|...|..|+|+|...-+|..++.+..|+|.|+.+......+ ..+ ..+++++|.-+..++|..|-.+|.|.|||
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 4677899999999999988558999999999999999998777776 345 78999999998788888999999999999
Q ss_pred CCCCce
Q 009022 244 LETGLA 249 (546)
Q Consensus 244 ~~~~~~ 249 (546)
++....
T Consensus 265 ~R~~~~ 270 (463)
T KOG1645|consen 265 MRQPEG 270 (463)
T ss_pred ccCCCc
Confidence 986543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.4e-08 Score=85.80 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=112.5
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009022 221 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 300 (546)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 300 (546)
+|+-+-..+-++.+.+..|-+-|+.+|...... .. ..|.++.|...++++..|+++|.|..+|++...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sk----------sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SK----------SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc-cc----------hhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence 555332223355666777888888887543322 11 2488889999999999999999999999998632
Q ss_pred Cc-ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEE--EEeCCCCEEEEEeC
Q 009022 301 SG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSA--YFSPSGSKILTTSQ 376 (546)
Q Consensus 301 ~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~--~~~p~~~~l~s~s~ 376 (546)
-. ......-|...|+++.....+.++|++.+.+|.|++||+|..+....+... +|...-.-+ -..+....+++++.
T Consensus 287 G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 287 GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 21 111223455588888877657789999999999999999977665444443 554433322 33456667888999
Q ss_pred CCcEEEEECCCCCCCC
Q 009022 377 DNRLRIWDSIFGNLDS 392 (546)
Q Consensus 377 dg~i~vwd~~~~~~~~ 392 (546)
|-..+||.+..|+++.
T Consensus 367 DcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLC 382 (425)
T ss_pred eeEEEEEecccCceee
Confidence 9999999999988754
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=1.6e-05 Score=77.02 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=105.5
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCC-EEEEEeC---CCeEEEEECCCCceeeeeecCCCCCCCCCcccc
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (546)
..|.+=|.......... . . ..+....|+|+ ++ .++..+. ...|+++|+.+++......... .
T Consensus 169 ~~l~~~d~dg~~~~~~~-~-~-~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----------~ 234 (419)
T PRK04043 169 SNIVLADYTLTYQKVIV-K-G-GLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----------M 234 (419)
T ss_pred ceEEEECCCCCceeEEc-c-C-CCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------c
Confidence 34555555444333232 2 2 37788999999 65 3554443 3569999999887665443211 2
Q ss_pred eEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECC
Q 009022 269 LYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIR 342 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~ 342 (546)
.....|+|||+.|+... .+..|+++++.++... .............|+| +++.|+..+. .+ .|+++|+.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 45677999998777643 2357888898776422 1122222234568999 8887766553 33 67888886
Q ss_pred CCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCCC
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---------NRLRIWDSIFGNL 390 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d---------g~i~vwd~~~~~~ 390 (546)
++...+.. ..+. ....|+|+|++|+..+.. ..|.+.|+.++..
T Consensus 310 ~g~~~rlt-~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 310 SGSVEQVV-FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCeEeCc-cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 54432222 1111 124899999998877654 2578888877653
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=2.6e-08 Score=97.71 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=140.1
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC--
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-- 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 288 (546)
..|....+|++|+-. .+.|+.|+..|.|++|++.+|.......+|.. +++.+.-+.+|..+++.+...
T Consensus 1098 rd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S---------avT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS---------AVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hccccceeeEEeecC-CceEEeeeccceEEEEEccCcccccccccccc---------ccccccccCCcceeeeeccccCc
Confidence 567888999999998 99999999999999999999998887777665 477788888888877765433
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee--cCCCCcEEEEEEeC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD--LPHKRVVNSAYFSP 366 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~p 366 (546)
...+|++..--... |.. ..-.++.|+. ....-+.|.......|||+.+......+.. .+....-++..|+|
T Consensus 1168 lsaLW~~~s~~~~~-----Hsf-~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPR-----HSF-DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred hHHHhccccccCcc-----ccc-cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 46788886522111 111 1356788886 444445555556788999987654333211 12233347788999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
+..+++ .|| .+||++..+. .+.|.+......-.|+|. |.-+.+ .-.|||
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~a---------Ih~FD~ft~~~~G~FHP~---------g~eVII--------NSEIwD 1289 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEA---------IHRFDQFTDYGGGGFHPS---------GNEVII--------NSEIWD 1289 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHH---------HhhhhhheecccccccCC---------CceEEe--------echhhh
Confidence 888776 355 5799875432 233333332234567776 322220 135899
Q ss_pred CCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 447 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
++|.+++.++..-.. +.| .|...|..++.
T Consensus 1290 ~RTF~lLh~VP~Ldq---c~V-tFNstG~VmYa 1318 (1516)
T KOG1832|consen 1290 MRTFKLLHSVPSLDQ---CAV-TFNSTGDVMYA 1318 (1516)
T ss_pred hHHHHHHhcCccccc---eEE-EeccCccchhh
Confidence 999988877654331 222 46666655443
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=2e-06 Score=83.69 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=132.4
Q ss_pred eccccCCCeEEEEEcCC---CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 165 VIRYHSRRVTCLEFHPT---NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
-+..|.++|..++|-+. .+.+|+.-....+|.+|+..+++........ .....|+.+.|-+.+.+..-+..|.+.+
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceEEEEccCceEEE
Confidence 35668889999999763 2235555556679999999999998887533 3466779999987777777666777766
Q ss_pred EECCCC----ceeeeeecCCC--------------CCC--CCCcc---cceEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009022 242 TDLETG----LALSLMNVNPN--------------GWH--GPRTW---RMLYGMDINPEKGVVLVADNFGFLYLVDARTN 298 (546)
Q Consensus 242 wd~~~~----~~~~~~~~~~~--------------~~~--~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 298 (546)
-+.-.. ...+.+..... ... .+... .....++|+|.-+.++...-...+.++|++-.
T Consensus 183 ~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~ 262 (1062)
T KOG1912|consen 183 CKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE 262 (1062)
T ss_pred EeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh
Confidence 654311 11111111111 000 00000 01224567888888888888899999999876
Q ss_pred CCCcceEEeecCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCC----------------CceeeecCCCCcEEE
Q 009022 299 SRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEA----------------GSSLCDLPHKRVVNS 361 (546)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~ 361 (546)
...... .+... .+.-+.|-|. ....|++...+|.+.+|-.+.... ...+..... ..+..
T Consensus 263 ~~l~vv-pier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~-~rp~~ 338 (1062)
T KOG1912|consen 263 CCLAVV-PIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE-FRPVI 338 (1062)
T ss_pred ceeEEE-EeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh-cccce
Confidence 655432 33333 3444555551 445889999999999997653111 111111111 11222
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEECCCCCC
Q 009022 362 AYFSPS-GSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 362 ~~~~p~-~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
....|. .+.++.--.+|.+.+|.+++|+.
T Consensus 339 ~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 339 GASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred eecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 333453 44555555678899999987764
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=8.7e-05 Score=67.00 Aligned_cols=199 Identities=15% Similarity=0.209 Sum_probs=128.6
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
++.|.+....++++--..+.|..|+..+........ .. ...+++... ...|+.+...+ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~--~~G~~~~~~-~g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PG--PNGMAFDRP-DGRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SS--EEEEEEECT-TSEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CC--CceEEEEcc-CCEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578998333788888889999999998876544332 11 677788733 34555555544 5666999987665555
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
.... ......++.+++.++|++.++.... |.|+.++.. ++. ... ...-...+.|+|+| +++.
T Consensus 78 ~~~~----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~---~~~~~~pNGi~~s~-dg~~ 147 (246)
T PF08450_consen 78 LPDG----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVV---ADGLGFPNGIAFSP-DGKT 147 (246)
T ss_dssp EETT----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEE---EEEESSEEEEEEET-TSSE
T ss_pred ccCC----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEE---ecCcccccceEECC-cchh
Confidence 4211 1122358899999999977776543 557777776 332 111 11122578999999 8876
Q ss_pred EE-EEeCCCeEEEEECCCCCC----CceeeecCC-CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 327 LL-SCGNDHFARIWDIRRLEA----GSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 327 l~-~~~~dg~i~iwd~~~~~~----~~~~~~~~~-~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
|+ +-+..+.|..|++..... ...+..+.. .+..-.+++..+|++.++.-..+.|.+++.. |++
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 55 666788999999864332 112222222 2347889999999988888788999999986 554
No 307
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.66 E-value=2e-05 Score=80.16 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=93.1
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCCC--CcceEEe
Q 009022 235 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EKGVVLVADNFGFLYLVDARTNSR--SGEAILI 307 (546)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~ 307 (546)
....|+-.|+..|+.+..+..+... +|..++-.. .....+.|-.+..|..||.|-... .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDI--------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCc--------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 4577999999999999998876542 233332211 234567788889999999986431 1111112
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
........|++-.. ..+||+|+.+|.||+||--.......+ .+...+|..|..+.+|++|+..+ +..|.+++..
T Consensus 574 Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 574 YSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTAL--PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcC--CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 22334577777764 567999999999999994321111111 15578999999999999988765 5678888864
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=6.3e-08 Score=84.88 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=111.9
Q ss_pred EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc--eeeecCCCCcE
Q 009022 282 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS--SLCDLPHKRVV 359 (546)
Q Consensus 282 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v 359 (546)
++.+.+-.|-+.++.++.... ....+.|.++.|.. .++++..|...|.|..+|+|....+. ....+-|.+.|
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-----f~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-----FQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccc-----cccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 555666788888888864321 12344788899987 78999999999999999999764332 33344699999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCc
Q 009022 360 NSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 438 (546)
Q Consensus 360 ~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~ 438 (546)
+++..-. ++++|++.+.+|+|++||++.-++.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~----------------------------------------------- 334 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCK----------------------------------------------- 334 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcc-----------------------------------------------
Confidence 9998877 8889999999999999998743320
Q ss_pred CcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 439 LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 439 d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
.-+.++.||-.....-..-+.+....+++++ |...+||.+..|.++.+++-+..
T Consensus 335 ------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 335 ------------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred ------------cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 0111223332111111114567777788877 99999999999999988876554
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=6e-06 Score=74.32 Aligned_cols=224 Identities=19% Similarity=0.104 Sum_probs=128.0
Q ss_pred CCcEEEEeCCCCceeEEecccC-CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceE
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 270 (546)
+|+|..||..+++.+....... .....+. ..+. +..+++++.++.|..||..+|+.+..+...... .. .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~------~- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-SG------A- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-GS------G-
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-cc------e-
Confidence 6889999999998888774211 1111211 2333 677888889999999999999998888763221 00 1
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCce
Q 009022 271 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 349 (546)
Q Consensus 271 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 349 (546)
....+..+++++.++.|+.+|..+++............ .......... .+..++++..++.|..+|+.+++..-.
T Consensus 72 ---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 72 ---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp ---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 12246667777788899999999988765522211111 1111222222 367788888899999999987654222
Q ss_pred eeecCCC--Cc------EEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCC
Q 009022 350 LCDLPHK--RV------VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 350 ~~~~~~~--~~------v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 421 (546)
....... .. +..-....++ .++.++.++.+..+|+.+++... ...... .. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-------~~~~~~----~~---------~ 206 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-------SKPISG----IY---------S 206 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-------EECSS-----EC---------E
T ss_pred eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-------EecCCC----cc---------C
Confidence 2111101 11 1122222244 67777777754444998876311 000000 00 0
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCchhhh
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
.....+..+. .++.++.|..||+.+|+.+
T Consensus 207 ~~~~~~~~l~---~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 207 LPSVDGGTLY---VTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CEECCCTEEE---EEETTTEEEEEETTTTEEE
T ss_pred CceeeCCEEE---EEeCCCEEEEEECCCCCEE
Confidence 0111133333 3447899999999999764
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=4.1e-06 Score=80.94 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=102.1
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
|...|.--++...+ .+++.|+.-|.+++|+-..+........+-.+.+..+..+++ ..++|+|+..|.|.++-++.+.
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccC
Confidence 44455555566667 699999999999999988876655543344455666777887 8888999999999999887754
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC-CCCcceEEeecCCCcEEEEEEC
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-SRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
........... ..+...|++++|++++..+++|...|.|.+..+... .............+.|..+.+.
T Consensus 110 p~~~~~~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeecccc---ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 43322222111 123447999999999999999999999999888772 2222222233334577777776
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=9.3e-07 Score=86.43 Aligned_cols=186 Identities=12% Similarity=0.166 Sum_probs=128.8
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
+.++|++++. ++|+-|+.+|.|++.+.+... ...+ .|+.. .-. |.++++|+.||.|.|..+-+.+..
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~-Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILE-GEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecCCcc-cccc--ccccc------ccC-CceEEEecCCCcEEEeeccCCccc
Confidence 4677888763 689999999999999987653 2222 35443 344 999999999999999999888877
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCC-----CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPE-----KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
..+.... ++.+++++|+ .+.+++|+..| +.++.-+-... ......+...++|.++.| .++
T Consensus 107 ~~~df~r----------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W---~g~ 171 (846)
T KOG2066|consen 107 TQYDFKR----------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKW---RGN 171 (846)
T ss_pred eeEecCC----------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEe---cCc
Confidence 7665543 5899999997 67899999888 66664332111 122245667789999999 568
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeec----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++|-++.+| |+|||+.+.+....+..- ........+.|.++.+++ . +...+|+|..++.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIKK 234 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEec
Confidence 999888666 899999764432222111 112223467887665443 3 4566799998873
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=4.7e-05 Score=68.11 Aligned_cols=245 Identities=17% Similarity=0.121 Sum_probs=142.6
Q ss_pred ceEEEEEecCCCCEEEEEeCCCe-EEEEECCCCceeeeeecCCCC-CCCCCcccceEEEEecCCCCEEEEE-----eCCC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGT-VSCTDLETGLALSLMNVNPNG-WHGPRTWRMLYGMDINPEKGVVLVA-----DNFG 288 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg 288 (546)
....++.+|.....++.+-.-|+ +.+||..+++....+...... +.+ .-.|+++|++|++. ...|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--------Hg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--------HGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--------CEEEcCCCCEEEEeccccCCCcE
Confidence 34567888864667777776654 788999999988877554332 112 34689999999997 4458
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC------------------CCeEEEEECCCCCCCcee
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN------------------DHFARIWDIRRLEAGSSL 350 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~ 350 (546)
.|-+||.... ..+.-.+..++-....+.+.| ++..|+++.. +-+|.+.|..+++.....
T Consensus 78 ~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 78 VIGVYDAARG--YRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEEEECcCC--cEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 9999999832 122223444544566788999 8876766531 123444455444433222
Q ss_pred ee--cCCCCcEEEEEEeCCCCEEEEEeCCCc-------EEEEECCCCCCCCCCcce-eeccCCcccCCceeEEecCCCCC
Q 009022 351 CD--LPHKRVVNSAYFSPSGSKILTTSQDNR-------LRIWDSIFGNLDSPSREI-VHSHDFNRHLTPFRAEWDPKDPS 420 (546)
Q Consensus 351 ~~--~~~~~~v~~~~~~p~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~ 420 (546)
.. --|.-.|..+++.++|..++..-..|. |-+++- +......... .....+.+.. -+++++++
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~--gSIa~~~~--- 227 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYI--GSIAADRD--- 227 (305)
T ss_pred ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCce--EEEEEeCC---
Confidence 22 126667899999988876665544332 223322 1111100000 0001111111 14555554
Q ss_pred CceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCC
Q 009022 421 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 421 ~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~ 491 (546)
|.+++. ++-.-+.+.+||..+|+.+....-. .++.+ +..+++ +|+|.+.|.+......
T Consensus 228 ------g~~ia~--tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGv-a~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 228 ------GRLIAV--TSPRGGRVAVWDAATGRLLGSVPLP---DACGV-APTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred ------CCEEEE--ECCCCCEEEEEECCCCCEeeccccC---ceeee-eecCCc-eEEeCCCccEEEccCc
Confidence 444442 5666788999999999987766443 34555 555555 7777776665544443
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.60 E-value=5.1e-05 Score=73.83 Aligned_cols=265 Identities=14% Similarity=0.108 Sum_probs=149.9
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEE-EEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN-IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
.++.++.++.+.-+|..+++....... . ..+.+ .... +..++.++.+|.|..+|..+|+.+.............
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~-~-~~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKV-A-GEALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccC-C-CceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 466777889999999999988777632 2 22222 1222 4567778888999999999999888775432110000
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC-C---cEEEEEECC-CCCCEEEEEeCCCeEEE
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-S---KVVGLHCNP-IQPELLLSCGNDHFARI 338 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~---~i~~~~~~p-~~~~~l~~~~~dg~i~i 338 (546)
....++ . .+..+++++.+|.+..+|..+++............ . ....+..+| ..+..+++++.+|.+..
T Consensus 197 ~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 197 GESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 000011 1 13457778888999999998877554321111000 0 011111122 02356667778999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 418 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 418 (546)
+|+.+++. +....... ...+.. .+..|+.++.+|.+..+|..+|+.+-.... .... .+
T Consensus 271 ld~~tG~~---~W~~~~~~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~~~~------~~---- 328 (394)
T PRK11138 271 LDLRSGQI---VWKREYGS-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD------LLHR------LL---- 328 (394)
T ss_pred EECCCCCE---EEeecCCC-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc------cCCC------cc----
Confidence 99976543 22221111 112222 466777888899999999988865321110 0000 00
Q ss_pred CCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 419 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 419 ~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
...+...|.++ .+..+|.|.++|..+|+.+.............- .+ .++ .|+.++ ||.|..+++
T Consensus 329 -~sp~v~~g~l~----v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P-~~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 -TAPVLYNGYLV----VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP-VV-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred -cCCEEECCEEE----EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC-EE-ECC-EEEEEeCCceEEEEeC
Confidence 01112223333 477889999999999998776643321111111 12 234 566666 999988764
No 314
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.60 E-value=2.3e-06 Score=86.71 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCcEEEEeCCCCceeEEecccCCCceEEEEEecC------CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 191 KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT------NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 191 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
....|+-.|+..++.+..+......+|..++ |+ .+..-+.|-.++.|..||.+-..... +.... ....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-v~~~~---k~Y~ 575 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-VDSQS---KQYS 575 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCce-eeccc---cccc
Confidence 4567888888888887777433333355543 42 13445667778899999998643111 11111 1112
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
......|++-+. ..+||+|+.+|.|++||-- +....+ .+.+-+.+|.+|..+. +|++|++.+ +..|.|++.
T Consensus 576 ~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~-g~~AKT--~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTE-DGYIAVGSNKGDIRLYDRL-GKRAKT--ALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecC-CceEEEEeCCCcEEeeccc-chhhhh--cCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 222466666554 4579999999999999943 332222 3334466999999999 999888765 567777775
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2e-06 Score=84.17 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=127.3
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEE
Q 009022 214 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 293 (546)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 293 (546)
...+.|++++ ...|+.|+.+|.|++++.... . .....+.. -..+|.++++++.||.|.+.
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~---------------~~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSS---------------SILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCc-c-cccccccc---------------cccCCceEEEecCCCcEEEe
Confidence 4556777776 679999999999999987643 2 11111100 05579999999999999999
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
.+-+.+...+ .....++.+++++|. ....+++|+..| +.++.-+-......+......++|.++.| .|+
T Consensus 99 sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~ 171 (846)
T KOG2066|consen 99 SLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGN 171 (846)
T ss_pred eccCCcccee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCc
Confidence 8887654422 233348999999993 256899999888 88876543333333333357889999999 789
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
++|-++.+| |+|||+.+++.+....... ........+..+.|.+. .+++. +...+|+|..++
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~~~---------~~LVI-----GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQDE---------DRLVI-----GWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEecCC---------CeEEE-----ecCCeEEEEEEe
Confidence 999988776 9999998877543222111 12222333456788876 22222 233457777776
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=2.9e-05 Score=70.11 Aligned_cols=224 Identities=18% Similarity=0.188 Sum_probs=131.5
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec-CCCCEEEEEeCCCcEEEEeCCC
Q 009022 219 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDART 297 (546)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~ 297 (546)
++.|.+..+.++++-...+.|+.|+..++.... +... ....+.+. ++ ..|+++.. +.+.++|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----------~~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----------GPNGMAFDRPD-GRLYVADS-GGIAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----------SEEEEEEECTT-SEEEEEET-TCEEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----------CCceEEEEccC-CEEEEEEc-CceEEEecCC
Confidence 578998537777777778999999998876543 2221 25677777 55 55555555 4455568887
Q ss_pred CCCCcceEEee--c-CCCcEEEEEECCCCCCEEEEEeCC--------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeC
Q 009022 298 NSRSGEAILIH--R-KGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 366 (546)
Q Consensus 298 ~~~~~~~~~~~--~-~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p 366 (546)
++... +.... . .....+.+++.| ++++.++.... |.|..++.. .+. ......-...+.|+|+|
T Consensus 70 g~~~~-~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 70 GKVTV-LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TVVADGLGFPNGIAFSP 143 (246)
T ss_dssp TEEEE-EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EEEEEEESSEEEEEEET
T ss_pred CcEEE-EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE---EEEecCcccccceEECC
Confidence 64432 22221 1 334688999999 88877776543 567777775 221 11122344578999999
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCCCCCCCcceeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEE
Q 009022 367 SGSKIL-TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 444 (546)
Q Consensus 367 ~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~i 444 (546)
+++.|+ +-+..+.|..|++...........+.. .+... ..+-.++...+ |++.+ +....+.|.+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~g~pDG~~vD~~---------G~l~v---a~~~~~~I~~ 209 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI--DFPGGPGYPDGLAVDSD---------GNLWV---ADWGGGRIVV 209 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--E-SSSSCEEEEEEEBTT---------S-EEE---EEETTTEEEE
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEE--EcCCCCcCCCcceEcCC---------CCEEE---EEcCCCEEEE
Confidence 998775 556678899999864322000011111 11111 01223455554 55554 3335578999
Q ss_pred EECCchhhhHhhcCCCCCcccceeee-cCCCcEEEE
Q 009022 445 IDITTGQLVAEVMDPNITTISPVNKL-HPRDDVLAS 479 (546)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~i~~v~~~-s~~~~~l~s 479 (546)
++.. |+.+..+..+. ...+++ +| .++.+.|+.
T Consensus 210 ~~p~-G~~~~~i~~p~-~~~t~~-~fgg~~~~~L~v 242 (246)
T PF08450_consen 210 FDPD-GKLLREIELPV-PRPTNC-AFGGPDGKTLYV 242 (246)
T ss_dssp EETT-SCEEEEEE-SS-SSEEEE-EEESTTSSEEEE
T ss_pred ECCC-ccEEEEEcCCC-CCEEEE-EEECCCCCEEEE
Confidence 9987 88887776663 456666 78 466554443
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=3.7e-06 Score=75.72 Aligned_cols=230 Identities=19% Similarity=0.120 Sum_probs=129.0
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
+|.|..||..+|+.+........ .. ...+. ..+++..+++++.++.|+.||..+++..............
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IG------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CS------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CC------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--
Confidence 68999999999999988865321 00 11111 2336777888899999999999998765433221111111
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC--CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
... .+..+++++.++.|+.+|..+++..-...... .......+.....+..++++..++.|..+|+.+|+.+..
T Consensus 72 -~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 72 -PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -eee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 122 34566777788899999987765522211111 111122223333488888888899999999999876321
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeE-EeeeeeecCCCCcCcc-eEEEECCchhhhHhhcCCCCCcccceeeec
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAV-IGRYISENYNGAALHP-IDFIDITTGQLVAEVMDPNITTISPVNKLH 471 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~g~~~~~~~~g~~d~~-i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s 471 (546)
... ........+. ..... ...+.+ .+..+ ....++. +.+ |+.+++.+.... ...... ...
T Consensus 148 ~~~-----~~~~~~~~~~-~~~~~--~~~~~~~~~~v~----~~~~~g~~~~~-d~~tg~~~w~~~---~~~~~~--~~~ 209 (238)
T PF13360_consen 148 YPV-----GEPRGSSPIS-SFSDI--NGSPVISDGRVY----VSSGDGRVVAV-DLATGEKLWSKP---ISGIYS--LPS 209 (238)
T ss_dssp EES-----STT-SS--EE-EETTE--EEEEECCTTEEE----EECCTSSEEEE-ETTTTEEEEEEC---SS-ECE--CEE
T ss_pred eec-----CCCCCCccee-eeccc--ccceEEECCEEE----EEcCCCeEEEE-ECCCCCEEEEec---CCCccC--Cce
Confidence 100 0000000000 00000 000011 12222 2344444 555 999998554222 122332 156
Q ss_pred CCCcEEEEec-CCcEEEEcCCCCCccc
Q 009022 472 PRDDVLASGS-SRSIFIWRPKEKSELV 497 (546)
Q Consensus 472 ~~~~~l~sgs-dg~i~vwd~~~~~~~~ 497 (546)
+.+..|+.++ ++.|..||+.+|+.+.
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 7788888887 9999999999998754
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.6e-06 Score=78.99 Aligned_cols=233 Identities=8% Similarity=0.018 Sum_probs=149.0
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCcE
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFL 290 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i 290 (546)
-|...|+.+.-.. .+++++++.||.++.|--..-..+..+ .+ -..+...+.+++.+-++.++.+.+. |..+
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfV-Kh-----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFV-KH-----FRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeeh-hh-----hHHHHHHHHhhhccccceeEeeccCcccce
Confidence 3778888776554 689999999999999975431211111 11 1122235778888999999999777 9999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC-EEEE-EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-LLLS-CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
+++|+.+-....-+ ....-.+.+ +...+|.+.. .|++ .-.++.+.++|-............-|..+|.++.+.|-+
T Consensus 79 KvfDvEn~Dminmi-KL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVENFDMINMI-KLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeeccchhhhc-ccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 99999875543211 111111112 2222331111 3333 336789999998754433333333589999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
..+++....|.|.-|.... .+..|.. .+.|. ++
T Consensus 157 Ds~vSiD~~gmVEyWs~e~-~~qfPr~---------------~l~~~-------------------------------~K 189 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEG-PFQFPRT---------------NLNFE-------------------------------LK 189 (558)
T ss_pred cceeeccccceeEeecCCC-cccCccc---------------ccccc-------------------------------cc
Confidence 9999999999999998752 1111100 12222 22
Q ss_pred chhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 449 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
...-+..+.... ....++ .|+|+|..+++-+ |..|+++.+.+|+.++.+.+..
T Consensus 190 ~eTdLy~f~K~K-t~pts~-Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 190 HETDLYGFPKAK-TEPTSF-EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccchhhcccccc-cCccce-EEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 222222222222 344455 8999999999988 9999999999999888876543
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=5.4e-05 Score=78.03 Aligned_cols=212 Identities=9% Similarity=0.083 Sum_probs=135.1
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC----
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL---- 244 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~---- 244 (546)
-.+.|.++.|..+. .-++.+...|.|.+-|..+...... ..-...|.+++|+|+ ...++..+..+++.+-.-
T Consensus 67 gd~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADT-NSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPD-EELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEeccc-ceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCC-CcEEEEEeCCcEEEEEeccccc
Confidence 34689999999988 4577777889999998887654433 336778999999999 999998888777766432
Q ss_pred CCCcee-------------------eeeecCCCC---CC--------C-CCcccceEEEEecCCCCEEEEE-----eCCC
Q 009022 245 ETGLAL-------------------SLMNVNPNG---WH--------G-PRTWRMLYGMDINPEKGVVLVA-----DNFG 288 (546)
Q Consensus 245 ~~~~~~-------------------~~~~~~~~~---~~--------~-~~~~~~v~~~~~~~~~~~l~~~-----~~dg 288 (546)
-..+.+ ..+.+.... .. + ......-.+|+|--||.++++. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111111 011100000 00 0 0000123458999999999993 3447
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCCceeeecC-CCCcEEEEEE
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYF 364 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~ 364 (546)
.|++||-. +..... .....+.-.+++|-| .|..+++-. .++.|.+|.-+-...+......+ ....|..++|
T Consensus 223 kirV~drE-g~Lns~---se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNST---SEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-chhhcc---cCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 99999977 322211 111122346899999 888888764 45679999865433332222222 3334999999
Q ss_pred eCCCCEEEE---EeCCCcEEEEECCCCC
Q 009022 365 SPSGSKILT---TSQDNRLRIWDSIFGN 389 (546)
Q Consensus 365 ~p~~~~l~s---~s~dg~i~vwd~~~~~ 389 (546)
+.++..|++ ......|++|-+.+.+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeE
Confidence 999999988 4444559999886543
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=3.9e-06 Score=83.33 Aligned_cols=183 Identities=13% Similarity=0.167 Sum_probs=135.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
..++.|+....+..+|+.+........ .....|+-++.+ ++++++|...|+|.+-|..+-+.+..+..|...
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---- 219 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---- 219 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeee-ccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccc----
Confidence 357777777789999998877666552 233346655543 789999999999999999999999999887653
Q ss_pred CcccceEEEEecCCCCEEEEEeC---------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 264 RTWRMLYGMDINPEKGVVLVADN---------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
+. +|+-.|+.|++++. |..|++||++..+.+..+ ..+. ...-+.|.|.-...+++++..|
T Consensus 220 -----iS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~---~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 220 -----IS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPY---GPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred -----ee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-cccc---CchhhhhcccccceEEEEeccc
Confidence 43 46668899998864 446789999987765433 2222 2355778886677899999999
Q ss_pred eEEEEECCCCCCC--ceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 335 FARIWDIRRLEAG--SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 335 ~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
...+-|..+.... ...........+..++++++++.++.|..+|.|.+|.-
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 9999994322221 12222245556999999999999999999999999973
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=0.00017 Score=64.68 Aligned_cols=206 Identities=16% Similarity=0.115 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcEEEEEcCCC-cEEEEeCCCCceeEEecccCCCc--eEEEEEecCCCCEEEEEeC-----CCeEEEEEC
Q 009022 173 VTCLEFHPTNNHILLSGDKKG-QVGVWDFYKVSEKIVYGNIHSCI--VNNIRFNPTNDGTVYAASS-----DGTVSCTDL 244 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~ 244 (546)
...++.+|.....++.+-.-| .+.+||..++.....+. ...+. --...|+++ +++|++.-. .|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEEEEEC
Confidence 346788886656777776655 57889999888776653 22221 124679999 888888644 589999999
Q ss_pred C-CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------------------CCcEEEEeCCCCCCCcceE
Q 009022 245 E-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------------------FGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~ 305 (546)
. +-+.+..+..+.. ....+.+.|++..|+++.. +-++.+.|..++..+.+..
T Consensus 85 ~~~~~ri~E~~s~GI---------GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI---------GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cCCcEEEeEecCCCc---------ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 8 4445555544332 2456779999988888621 1244455556655443321
Q ss_pred E-eecCCCcEEEEEECCCCCCEEEEEeCCC-------eEEEEECCCCCCCceeee-----cCCCCcEEEEEEeCCCCEEE
Q 009022 306 L-IHRKGSKVVGLHCNPIQPELLLSCGNDH-------FARIWDIRRLEAGSSLCD-----LPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 306 ~-~~~~~~~i~~~~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~ 372 (546)
. ...+...|..+++.+ ++..++..-..| .|.++.... ....+.. ......|-+|++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 1 122344788888888 666555544333 234444321 1111111 12356789999999998775
Q ss_pred EEe-CCCcEEEEECCCCCCCC
Q 009022 373 TTS-QDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 373 s~s-~dg~i~vwd~~~~~~~~ 392 (546)
+.| ..+++.+||..+++++.
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred EECCCCCEEEEEECCCCCEee
Confidence 555 57899999999988744
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=1.4e-05 Score=72.19 Aligned_cols=284 Identities=12% Similarity=0.056 Sum_probs=159.4
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC----------CCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----------DGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
+.+.|+|..+++.+-.+..+.. -.+..+|+ ++.+++++. .-.|.+||..+-.....+.++..+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4799999988887776654443 34667899 877776542 447999999999999988887642111
Q ss_pred CCcccceEEEEecCCCCEEEEE--eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 340 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd 340 (546)
... ....++++.+++++++. +-...|.+.|+...+....+ ... .+..+ .|..++-|.+-+.||.+....
T Consensus 93 ~~~--~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei---~~P--GC~~i--yP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 93 VVP--YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI---DTP--GCWLI--YPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE---EGT--SEEEE--EEEETTEEEEEETTSCEEEEE
T ss_pred ecc--cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee---cCC--CEEEE--EecCCCceEEEecCCceEEEE
Confidence 111 23456789999988885 45568999999886654321 111 12222 232345677888899999998
Q ss_pred CCCCCCCceee--ec-C-CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC-Cc---cc-CCce-
Q 009022 341 IRRLEAGSSLC--DL-P-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD-FN---RH-LTPF- 410 (546)
Q Consensus 341 ~~~~~~~~~~~--~~-~-~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~---~~-~~~~- 410 (546)
+.......... .+ . ....+..-++...+..++-.+..|.|+--|+....... ........ -. ++ ...+
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHHTTEEE-SSS
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc--cCcccccCccccccCcCCccee
Confidence 87432211111 11 1 22223344555555556657789999888886543210 00000000 00 00 0000
Q ss_pred eEEecCCCCCCceeEEeeeeeecCCC---C---cCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc-EEEEe-c-
Q 009022 411 RAEWDPKDPSESLAVIGRYISENYNG---A---ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLASG-S- 481 (546)
Q Consensus 411 ~~~~~p~~~~~~~~~~g~~~~~~~~g---~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~-~l~sg-s- 481 (546)
-+++++.. +++....-.| + ....|.+||+.+++.+.++...+ .+.+| +++.+.. +|++. .
T Consensus 242 ~~A~~~~~--------~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si-~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 242 LIAYHAAS--------GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSI-AVSQDDKPLLYALSAG 310 (342)
T ss_dssp -EEEETTT--------TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEE-EEESSSS-EEEEEETT
T ss_pred eeeecccc--------CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceE-EEccCCCcEEEEEcCC
Confidence 13344332 1222111111 1 11358888999999999886542 34456 6777664 66543 3
Q ss_pred CCcEEEEcCCCCCccceeecc
Q 009022 482 SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 482 dg~i~vwd~~~~~~~~~~~~~ 502 (546)
++.|.+||..+|+.++++.+-
T Consensus 311 ~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 311 DGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TTEEEEEETTT--EEEEE---
T ss_pred CCeEEEEeCcCCcEEeehhcc
Confidence 799999999999999988653
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=0.00026 Score=67.86 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=81.2
Q ss_pred cEEEEEECCCCCCEEEEEe----CCCe----EEEEECCCCCCCc-eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 313 KVVGLHCNPIQPELLLSCG----NDHF----ARIWDIRRLEAGS-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~----~dg~----i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
...++.|+-.+++.+.+.. .+|. -.+|++...+... .+..++..+.|.+++++|+...|+.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 4567777765566665543 2343 3567765433221 22334788899999999999999999999999999
Q ss_pred ECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh
Q 009022 384 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 452 (546)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~ 452 (546)
|...+... .......+..++|+|+ |.+++ .|+..|.|.+||+.-...
T Consensus 287 D~~~~~t~----------~~ka~~~P~~iaWHp~---------gai~~---V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRGVTL----------LAKAEFIPTLIAWHPD---------GAIFV---VGSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCCeee----------eeeecccceEEEEcCC---------CcEEE---EEcCCceEEEEEeecCcc
Confidence 98755321 1112233567899998 66666 788999999999875443
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.9e-05 Score=74.85 Aligned_cols=203 Identities=13% Similarity=0.131 Sum_probs=127.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee-EEecccCCCc-eEEEEEecCCCCEEEEEeCCC-----eEEEEEC
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-IVYGNIHSCI-VNNIRFNPTNDGTVYAASSDG-----TVSCTDL 244 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~ 244 (546)
.|+| |++.+ ..++.|+.+|.|.+.+-. ... ..+ +.+... |..+..... ..+|++.+.|+ .|+||++
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~s--~~~~~~f-qa~~~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNSS--FQLIRGF-QAYEQSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEeccc--ceeeehh-eecchhhhhHhhcccC-ceEEEEEeecCCCCceEEEEecc
Confidence 5555 56666 579999999988887643 222 223 445555 444443333 57888877764 4899999
Q ss_pred CCC------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CcceEEeecCCCcEEEE
Q 009022 245 ETG------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR-SGEAILIHRKGSKVVGL 317 (546)
Q Consensus 245 ~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~ 317 (546)
+.- .++......+. .-+....++.+++.+.+-+.+|+|-.+|.|..+.-.--+. ..+..-.+....+|+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~--~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTI--KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred cccCCCCCcceeeeeeeecc--CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 743 22211111111 1112334688999999999999999999999985332111 11233345566799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++.. ++..++-......|.+|.+.... .....+ .|...++|..+++....|++++ ...+.+|+...
T Consensus 178 ~~~~-d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 178 ALRS-DGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred EEec-CCceeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 9987 66653333345679999987332 223323 6778899999998555465554 45699999864
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=9e-05 Score=73.88 Aligned_cols=296 Identities=16% Similarity=0.115 Sum_probs=159.3
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCC-----CceE--EEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-----CIVN--NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
.++.++.++.|.-.|..+++.+..+..... ..+. .+... + +..++.++.+|.|..+|..+|+.+..+....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~-~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D-PRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c-CCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 466677789999999999887776632221 0110 11111 1 2688888899999999999999988876543
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEe---------CCCcEEEEeCCCCCCCcceEEeecC-----------------C
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVAD---------NFGFLYLVDARTNSRSGEAILIHRK-----------------G 311 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~-----------------~ 311 (546)
........ ..+..+. +..+++++ .+|.|+.+|..+++........... +
T Consensus 141 ~~~~~~~i---~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 141 QVPPGYTM---TGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CcCcceEe---cCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 21000000 0011111 24455543 3678899999888765543221110 0
Q ss_pred CcE-EEEEECCCCCCEEEEEeCCC------------------eEEEEECCCCCCCceeeecCCCC----cEEEEEEe---
Q 009022 312 SKV-VGLHCNPIQPELLLSCGNDH------------------FARIWDIRRLEAGSSLCDLPHKR----VVNSAYFS--- 365 (546)
Q Consensus 312 ~~i-~~~~~~p~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~--- 365 (546)
..+ ...++.+ .+..++.++.++ .|.-+|+.+++..=......+.. ......+.
T Consensus 216 ~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 216 GTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 001 1234444 456677776554 68888887665421111111211 00011111
Q ss_pred -CCCC---EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeee--------ec
Q 009022 366 -PSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS--------EN 433 (546)
Q Consensus 366 -p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~--------~~ 433 (546)
-++. .+++++.+|.+...|..+|+.+-....... ....+|. .+.+....+. ..
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----------~~~~~~~----~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----------PMAYDPG----LVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-----------ccccCCc----eEEEccccccccCcccccCC
Confidence 1333 678888899999999999987543221100 0111110 0000000000 00
Q ss_pred CCCCcCcceEEEECCchhhhHhhcCCCC-------CcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 434 YNGAALHPIDFIDITTGQLVAEVMDPNI-------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 434 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~-------~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
+....++.|.-+|+.+|+.+.+...... .....- .....+.+|+.++ ||.|+.+|..+|+.+.+++....
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~-~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG-SLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc-ceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 0123457788888888887766543310 001000 1122567888888 99999999999999988876444
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=6.2e-05 Score=73.81 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=130.9
Q ss_pred CCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEe--cCCCCEEEEEe------------------CCCeE
Q 009022 181 TNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAAS------------------SDGTV 239 (546)
Q Consensus 181 ~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~------------------~dg~i 239 (546)
+| ++|+.-.. ...|...++...++...+.......+..++|- |+ ..+++.++ ..+.+
T Consensus 140 dG-r~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~-t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DG-RYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPR-TGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ce-eEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCC-ccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 56 67776654 55677777766555444433333444444443 33 33333332 24566
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC----cEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
.+.|..+.+....+..... ...++++++++++++.+.+. .+...+..... ....+... .+
T Consensus 218 SvID~etmeV~~qV~Vdgn----------pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvfni~--~i- 281 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGN----------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVFNIA--RI- 281 (635)
T ss_pred EEEECccceEEEEEEeCCC----------cccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEEchH--HH-
Confidence 7777777766666655432 35577899999998886322 23333222111 00011000 00
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCC--CCCceeeecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCCC--
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRL--EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL-- 390 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~~-- 390 (546)
-++.+ ++++... .++.|.+.|.++. .....+..+.-......+.++|+|+++++++. +.+|.|.|+.+.+.
T Consensus 282 -ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 282 -EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred -HHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 02234 5666555 3678999998761 01124444455666788999999999877665 89999999987542
Q ss_pred ---CCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 391 ---DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 391 ---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+.+...+.... .-...|+..+|.++ |.... +-.-|..|..|++.+
T Consensus 358 ~~~~~~~~~vvaev--evGlGPLHTaFDg~---------G~ayt---slf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEP--ELGLGPLHTAFDGR---------GNAYT---TLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEee--ccCCCcceEEECCC---------CCEEE---eEeecceeEEEehHH
Confidence 12222222222 22445667788776 32222 344567899999876
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=1.2e-06 Score=52.95 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=33.3
Q ss_pred eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 205 EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+...+ .+|...|++|+|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~-~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 34445 789999999999999 99999999999999997
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=5.4e-05 Score=72.40 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=69.5
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
.+|++...+........-.....+.+.+++| +...|+.|..||.|.+||...... .. ....-.++.++|||+|.+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t--~~--~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVT--LL--AKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCee--ee--eeecccceEEEEcCCCcE
Confidence 4566655443322223334455899999999 999999999999999999864322 11 134556788999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 009022 371 ILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~ 388 (546)
|++|+..|.+.+||+.-.
T Consensus 314 ~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCceEEEEEeecC
Confidence 999999999999998654
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=0.00057 Score=58.43 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=96.8
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
..++...+++.|+..+.+.--|.+++....... -...|.+-+.- - +++++.|...|.+++.+..+|.....+....
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 345555788999999999999999988777654 44455444433 2 7789999999999999999997777665432
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
.- -......+++..|..|+.|++.+..|.++...+.+. .-.++...+-+..|.+ ..|..+...|.|.
T Consensus 94 ~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks---kcgG~~f~sP~i~~g~-~sly~a~t~G~vl 160 (354)
T KOG4649|consen 94 TV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS---KCGGGTFVSPVIAPGD-GSLYAAITAGAVL 160 (354)
T ss_pred hh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEec---ccCCceeccceecCCC-ceEEEEeccceEE
Confidence 21 122345778999999999999999999986654432 1112123333445523 3344444455554
Q ss_pred EEEC
Q 009022 338 IWDI 341 (546)
Q Consensus 338 iwd~ 341 (546)
--..
T Consensus 161 avt~ 164 (354)
T KOG4649|consen 161 AVTK 164 (354)
T ss_pred EEcc
Confidence 4443
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=1e-05 Score=80.48 Aligned_cols=152 Identities=19% Similarity=0.257 Sum_probs=115.8
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---------CCeEEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------DGTVSCT 242 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iw 242 (546)
.|+-|+.+ + ++|.+|...|+|.+-|..+.+....+ ..|++.|..+... +++|++|+. |.-|+||
T Consensus 179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEec--C-cEEEeecccceEEeecCCcCceeeee-eccccceeeeecc---CCeEEEeecccccccccccchhhhh
Confidence 45555543 4 78999999999999999999988888 7899999887765 789999875 5668999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCC-CCcceEEeecCCCcEEEEEEC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNS-RSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~i~~~~~~ 320 (546)
|++..+.+.-+..+.. ..-+.|.|. ...+++++..|...+.|..+.. ........+..+..+..+.++
T Consensus 252 DLRmmral~PI~~~~~----------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYG----------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhhhccCCcccccC----------chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence 9998877766555433 233556664 4578888899999999944322 222333444555569999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEC
Q 009022 321 PIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~ 341 (546)
+ +++.++.|..+|.|.+|--
T Consensus 322 s-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 S-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred C-CCceEEEecccCcEeeecC
Confidence 9 9999999999999999973
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00015 Score=74.87 Aligned_cols=200 Identities=16% Similarity=0.214 Sum_probs=128.9
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC----CC
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI----RR 343 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~----~~ 343 (546)
.|.++.|..+...++++...|.|.+.|..+.... ....-...|.+++|+| ++..++..+..++|.+-.- -.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 6999999999999999999999999987764322 2222334799999999 9999999888888876432 11
Q ss_pred CCC----------------Cc---eeee----------------cC---CCCcEEEEEEeCCCCEEEEEe-----CCCcE
Q 009022 344 LEA----------------GS---SLCD----------------LP---HKRVVNSAYFSPSGSKILTTS-----QDNRL 380 (546)
Q Consensus 344 ~~~----------------~~---~~~~----------------~~---~~~~v~~~~~~p~~~~l~s~s-----~dg~i 380 (546)
.+. ++ .++. .+ ....=++|+|--+|.++|+.. ....|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 000 00 0100 00 011223589999999999843 23789
Q ss_pred EEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhh--cC
Q 009022 381 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV--MD 458 (546)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~--~~ 458 (546)
+|||-. |.+...... ..... -+++|-|. |..++....-..++.|.+|.-+-- ....| ..
T Consensus 225 rV~drE-g~Lns~se~----~~~l~----~~LsWkPs---------gs~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~ 285 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEP----VEGLQ----HSLSWKPS---------GSLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPF 285 (1265)
T ss_pred EEeccc-chhhcccCc----ccccc----cceeecCC---------CCeEeeeeecCCCCcEEEEecCCc-cccccccCC
Confidence 999976 554322111 11111 26899996 777776666777788999986432 11111 11
Q ss_pred CCC-CcccceeeecCCCcEEEE---ec-CCcEEEEcCCC
Q 009022 459 PNI-TTISPVNKLHPRDDVLAS---GS-SRSIFIWRPKE 492 (546)
Q Consensus 459 ~~~-~~i~~v~~~s~~~~~l~s---gs-dg~i~vwd~~~ 492 (546)
+.. ..+..+ +|+.++.+||. .. ...|++|-+.+
T Consensus 286 p~de~~ve~L-~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 286 PLDEKEVEEL-AWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccchhee-eecCCCCceeeeecccccceEEEEEecC
Confidence 211 226666 99999999998 33 34599998655
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.31 E-value=0.00052 Score=60.62 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=117.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+.+.+-...+..|+|+|+.+.++++....+.|...+.. ++.+..+...-.+-.-.|++..+ +.++++.-.++.+.++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEE
Confidence 35666666799999999876888999999999888875 45555543222456788888765 66666655689999998
Q ss_pred CCCCc-e-----eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC--CCCCcceEEe------ec
Q 009022 244 LETGL-A-----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAILI------HR 309 (546)
Q Consensus 244 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~------~~ 309 (546)
+.... . ...+..... ......+-.++|++.++.|+++-......+|.+.. .......... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S-------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccc----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 84321 1 112221111 11222488999999988888887777766776654 1111111010 11
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC--C-----CCcEEEEEEeCCCCEEEEEeCCCcEEE
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--H-----KRVVNSAYFSPSGSKILTTSQDNRLRI 382 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~~p~~~~l~s~s~dg~i~v 382 (546)
....+.+++++|..+.+++.......|..+|. +++....+.... | -...-.|+|.++|++.+++ .-+...+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 22357899999977788888888899999994 333222222111 1 1346789999999766665 5555555
Q ss_pred E
Q 009022 383 W 383 (546)
Q Consensus 383 w 383 (546)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.4e-05 Score=78.89 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
+++++|+|.. .+|++|-.-|.+.+|...+.+..... ..|..+|..+.|+|+ |+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~-~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVV-ETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeec-cCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 5679999987 78899999999999998877665555 679999999999999 9999999999999999876
No 334
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.28 E-value=0.0033 Score=63.03 Aligned_cols=304 Identities=16% Similarity=0.097 Sum_probs=163.1
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceE----------EEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN----------NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.++.|+-.|..+++.+..+...-...+. .+++. +..++.++.++.|..+|..+|+.+....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 5666777888999999998887776422111111 12222 3567788889999999999999987765
Q ss_pred cCCCCCCCCCcccceEEEEecC--CCCEEEEEe------CCCcEEEEeCCCCCCCcceEEeecC----------------
Q 009022 255 VNPNGWHGPRTWRMLYGMDINP--EKGVVLVAD------NFGFLYLVDARTNSRSGEAILIHRK---------------- 310 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~---------------- 310 (546)
...... .. .+. -+| .+..++++. .+|.|.-+|..+++...+.......
T Consensus 148 ~~~~~~-~~----~~t---ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 148 NGDYKA-GY----TIT---AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred cccccc-cc----ccc---CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 421100 00 011 111 123445543 2678999998887655432221110
Q ss_pred ------------CCcE-EEEEECCCCCCEEEEEeCC-----C-----------eEEEEECCCCCCCceeeecCCCC----
Q 009022 311 ------------GSKV-VGLHCNPIQPELLLSCGND-----H-----------FARIWDIRRLEAGSSLCDLPHKR---- 357 (546)
Q Consensus 311 ------------~~~i-~~~~~~p~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~---- 357 (546)
+..+ ..+++.| ...+++.+... + .|.-.|+++++..=.++...|..
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD 298 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence 1111 2346666 44555554422 2 56666777665532232223321
Q ss_pred ---cEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCCCCCCCccee---e--ccC------------------------
Q 009022 358 ---VVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIV---H--SHD------------------------ 402 (546)
Q Consensus 358 ---~v~~~~~~p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~--~~~------------------------ 402 (546)
...-+.+..+|+ .++.+..+|.+.+.|-.+|+++....... . ...
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 111222323665 78899999999999999998753211000 0 000
Q ss_pred ----CcccCCceeEEecCCCCCCceeEEeeee-----------------eec-----CCCCcCcceEEEECCchhhhHhh
Q 009022 403 ----FNRHLTPFRAEWDPKDPSESLAVIGRYI-----------------SEN-----YNGAALHPIDFIDITTGQLVAEV 456 (546)
Q Consensus 403 ----~~~~~~~~~~~~~p~~~~~~~~~~g~~~-----------------~~~-----~~g~~d~~i~iwd~~~~~~~~~~ 456 (546)
..+...=-..+++|......+.. +... ... .....-+.|.-+|+.+|+.+...
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~ 457 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPA-NEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEH 457 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEec-ccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEe
Confidence 00000000134444422111111 1100 000 00012467888999999887766
Q ss_pred cCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 457 MDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 457 ~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
..... ..... +...+.+++.++ +|.++.+|..+|+++.+++....
T Consensus 458 ~~~~p-~~~~~--l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 458 KEDFP-LWGGV--LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred cCCCC-CCCcc--eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 53321 11221 223556777788 99999999999999999887654
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.24 E-value=0.00093 Score=61.98 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=98.5
Q ss_pred EEcCCCCcEEEEEcCCCc--EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 177 EFHPTNNHILLSGDKKGQ--VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
+|.++|+++|+++..+|. +.+.|+.+++...... +.........++|+ .+.++.......|+-.|+.+.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 578889888888877765 5555777766555542 22233335677788 7777766666789999999988766666
Q ss_pred cCCCCCCCCCcccceEEEEe--cCCCCEEEEEeC----------------------CCcEEEEeCCCCCCCcceEEeecC
Q 009022 255 VNPNGWHGPRTWRMLYGMDI--NPEKGVVLVADN----------------------FGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
.+.. -+-...| +.++..++..-. ...|...|+.+++. ...+..
T Consensus 120 ~p~~---------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~ 186 (386)
T PF14583_consen 120 VPDD---------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFED 186 (386)
T ss_dssp --TT---------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEE
T ss_pred CCcc---------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEec
Confidence 5432 1222344 344555433211 12445556666542 233344
Q ss_pred CCcEEEEEECCCCCCEEEEEeC---CCe-EEEEECCCCCCC-ceeeecCCCCcEEEEEEeCCCCEEEEEeC-----CCcE
Q 009022 311 GSKVVGLHCNPIQPELLLSCGN---DHF-ARIWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSGSKILTTSQ-----DNRL 380 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~---dg~-i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-----dg~i 380 (546)
...+..+.|+|.++.+|+-|-. +.. -+||-+++.... ..+........+..=-|.|+|..|.--+. +..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 4578899999988888887653 322 366766543221 12221122334455568898887654322 3346
Q ss_pred EEEECCCCC
Q 009022 381 RIWDSIFGN 389 (546)
Q Consensus 381 ~vwd~~~~~ 389 (546)
.-+|+.+++
T Consensus 267 ~~~d~~t~~ 275 (386)
T PF14583_consen 267 AGYDPDTGE 275 (386)
T ss_dssp EEE-TTT--
T ss_pred EeeCCCCCC
Confidence 666776654
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.22 E-value=0.00074 Score=67.42 Aligned_cols=249 Identities=18% Similarity=0.174 Sum_probs=136.5
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC----ce-EEEEEecCCCCEEEEEe---------CCCeEEEEECCCCcee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC----IV-NNIRFNPTNDGTVYAAS---------SDGTVSCTDLETGLAL 250 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~ 250 (546)
.++.++.++.|+-+|..+++.+..+...... .+ ....+. +.+++.++ .+|.|..+|..+|+.+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 5777788999999999999888776422110 01 112222 23455543 3688999999999988
Q ss_pred eeeecCCCCCCCCCcc-----------cce-EEEEecCCCCEEEEEeCCC------------------cEEEEeCCCCCC
Q 009022 251 SLMNVNPNGWHGPRTW-----------RML-YGMDINPEKGVVLVADNFG------------------FLYLVDARTNSR 300 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~-----------~~v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~ 300 (546)
..+............+ ..+ ...++.+.+..+++++.++ .|.-+|+.+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 8776532110000000 001 1344555677788887665 688899998876
Q ss_pred CcceEEeec-------CCCc-EEEEEECCCCCC---EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 301 SGEAILIHR-------KGSK-VVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 301 ~~~~~~~~~-------~~~~-i~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
......... ...+ +..+. ..++. .+++++.+|.++.+|..+++..-.... . ...+..+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~-~----~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE-V----EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe-e----ccccccCC--c
Confidence 654321111 0000 11111 11232 677888899999999987654211111 0 11223333 2
Q ss_pred EEEEE------------------eCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEe---cCCCCCCceeEEee
Q 009022 370 KILTT------------------SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW---DPKDPSESLAVIGR 428 (546)
Q Consensus 370 ~l~s~------------------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~g~ 428 (546)
.++.+ ..+|.|.-.|+.+|+.+-........ ..| .|. ....+++.+.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----------~~~~~g~~~-~~~~~~~~g~ 407 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----------DSWNIGFPH-WGGSLATAGN 407 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----------cccccCCcc-cCcceEecCC
Confidence 22222 23577888888887754321110000 000 000 0112233344
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
++. .|+.++.|+.+|..+|+.+.++....
T Consensus 408 ~v~---~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 408 LVF---AGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eEE---EECCCCeEEEEECCCCceeeEEECCC
Confidence 444 57789999999999999988876543
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00032 Score=69.91 Aligned_cols=155 Identities=9% Similarity=0.091 Sum_probs=94.8
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----cEEEEeC
Q 009022 221 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDA 295 (546)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~ 295 (546)
+|++. +..++.|+.+|.|.+++-. -+.+..+...... .+..+-...+..+|++.+.|+ .|++|++
T Consensus 30 c~~s~-~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s--------iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 30 CCSSS-TGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS--------IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred EEcCC-CceEEEeeccccEEEeccc-ceeeehheecchh--------hhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 46677 8899999999999888743 2222334332221 133333333445677665544 5899999
Q ss_pred CCCCCCc--ceE---E-----eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC--CCCCCceeeecCCCCcEEEEE
Q 009022 296 RTNSRSG--EAI---L-----IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR--RLEAGSSLCDLPHKRVVNSAY 363 (546)
Q Consensus 296 ~~~~~~~--~~~---~-----~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~ 363 (546)
..-.... ..+ . ......++.+++++. +-..+|+|-.+|.|..+.-. .....+.........+|+.++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 7642221 111 1 112345788899988 78899999999999998532 111112222234677899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECC
Q 009022 364 FSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 364 ~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
+..++..++-..+-..|.+|.+.
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EecCCceeEEEEecceeEEEEec
Confidence 98877763333344568888775
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.13 E-value=0.0042 Score=57.17 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=134.2
Q ss_pred CCEEEEEeCCCeEEEEECC-CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 227 DGTVYAASSDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
++.|+.|+.+| |.++++. .......... ..|..+...++-+.+++-+. +.++++++..........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-----------~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL-----------SSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec-----------ceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccc
Confidence 77899999888 8999983 2222222211 13888888888777777654 999999987654433110
Q ss_pred -----------EeecCCCcEEEEE-ECCCCCCEEEEEeCCCeEEEEECCCCCC-C-ceeeecCCCCcEEEEEEeCCCCEE
Q 009022 306 -----------LIHRKGSKVVGLH-CNPIQPELLLSCGNDHFARIWDIRRLEA-G-SSLCDLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 306 -----------~~~~~~~~i~~~~-~~p~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~v~~~~~~p~~~~l 371 (546)
........+..++ .....+...++......|.+|....... . ..+..+.....+.+++|. ++.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEE
Confidence 0111112344444 1121334444444566899988865322 2 344445566889999997 6677
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeecc---CCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+.|..+ ...+.|+.++....-........ .......+..+.--++ +.++.. .+ .+-+|=-.
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~Ll~-----~~-~~g~fv~~ 215 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---------NEFLLC-----YD-NIGVFVNK 215 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---------ceEEEE-----ec-ceEEEEcC
Confidence 777644 48888998765421100000000 0001111122211121 233321 01 12233223
Q ss_pred chhhhH--hhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCCCccceeeccceEEEeec
Q 009022 449 TGQLVA--EVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGK 510 (546)
Q Consensus 449 ~~~~~~--~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 510 (546)
.|+..+ .+.-. .....+ ++ ...||+.-+++.|.||++.+++.++++..+.....+.+
T Consensus 216 ~G~~~r~~~i~W~--~~p~~~-~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 216 NGEPSRKSTIQWS--SAPQSV-AY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred CCCcCcccEEEcC--CchhEE-EE--ECCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEecC
Confidence 444332 11111 122222 22 35688887877799999999999999998887666543
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.10 E-value=1.7e-06 Score=82.55 Aligned_cols=209 Identities=17% Similarity=0.172 Sum_probs=127.9
Q ss_pred CceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEE----eCCC
Q 009022 215 CIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVA----DNFG 288 (546)
Q Consensus 215 ~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg 288 (546)
..+.|+++.-+. ...++.|..+|.|-+-.++...-... ...+....++++++|++ |.+.||+| ..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-------E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-------EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-------eecccccccccccccccccHHHHHhhhhhhcccC
Confidence 346677665542 35788888899999988765433211 11223334689999988 55667776 3466
Q ss_pred cEEEEeCCCC--CCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-CCceeeecCCCCcEEEEEEe
Q 009022 289 FLYLVDARTN--SRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAYFS 365 (546)
Q Consensus 289 ~i~i~d~~~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~ 365 (546)
.+.|||+.+. .+...............+++|.. +..++++|.....+.++|+|... ....+ ....+..+...
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVd 204 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVD 204 (783)
T ss_pred CccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceec
Confidence 8999999876 22221111112333566888986 88899999999999999998321 11112 23356678888
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEE
Q 009022 366 P-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 444 (546)
Q Consensus 366 p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~i 444 (546)
| .+.|+++.. ||.|.+||. -.+...+...+..... ......+.++|.|........ .....++|++
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~-~rnienpl~~i~~~~N-~~~~~l~~~aycPtrtglla~----------l~RdS~tIrl 271 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDT-YRNIENPLQIILRNEN-KKPKQLFALAYCPTRTGLLAV----------LSRDSITIRL 271 (783)
T ss_pred CCCCCceeccc-cCceeeccc-hhhhccHHHHHhhCCC-CcccceeeEEeccCCcchhhh----------hccCcceEEE
Confidence 8 888888876 999999994 1222222222221111 111134688999986432222 2344567888
Q ss_pred EECC
Q 009022 445 IDIT 448 (546)
Q Consensus 445 wd~~ 448 (546)
+++.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 8764
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.09 E-value=0.00089 Score=61.64 Aligned_cols=241 Identities=15% Similarity=0.083 Sum_probs=128.8
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee---cCCC--
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN---VNPN-- 258 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~-- 258 (546)
+.|+.|+.+| |.++++.......... +...|..+...|. -+.|++-+ |+.++++++..-....... ....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 5788888888 9999994333333332 3445999999998 66666555 4999999998654443211 0000
Q ss_pred CCCCCCcccceEEEE--ecCCCCEEEEEeCCCcEEEEeCCCCCCCc-ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe
Q 009022 259 GWHGPRTWRMLYGMD--INPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 335 (546)
Q Consensus 259 ~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 335 (546)
..........+..++ -...+...++......|.+|......... .......-...+..++|.+ +.|+.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeCC-c
Confidence 000001111233333 12233333344444588888876642222 2222223335789999974 677777644 4
Q ss_pred EEEEECCCCCCCceeeecC-----------CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc
Q 009022 336 ARIWDIRRLEAGSSLCDLP-----------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
..+.|+.+......+ ... ...++..+.. +++.+|++. +..-.+.|. .|+...
T Consensus 159 f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r------------ 221 (275)
T PF00780_consen 159 FYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR------------ 221 (275)
T ss_pred eEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc------------
Confidence 788898865442222 111 1123333333 345555542 333333343 333211
Q ss_pred ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 405 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 405 ~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
...+.|... ...+.....|+. +..++.|.||++.++++++.+..+.
T Consensus 222 ----~~~i~W~~~--p~~~~~~~pyli----~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 222 ----KSTIQWSSA--PQSVAYSSPYLI----AFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred ----ccEEEcCCc--hhEEEEECCEEE----EECCCEEEEEECcCCcEEEEEECCC
Confidence 124555442 234444455665 3444669999999998888776543
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0034 Score=55.53 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=95.7
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+-...+..|+|+|+.+.++++....+.|..+++ .|+.++.+.+.... ..-.|++..++.++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~--------D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG--------DYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-S--------SEEEEEE-STTEEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC--------CceeEEEECCCEEEEEEcCCCcE
Confidence 3455569999999985667777777888988897 47888887764421 47788898888888877778999
Q ss_pred EEEeCCCCCCCcce-----EE--ee-cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee---eec------
Q 009022 291 YLVDARTNSRSGEA-----IL--IH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL---CDL------ 353 (546)
Q Consensus 291 ~i~d~~~~~~~~~~-----~~--~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~------ 353 (546)
.++++......... +. .. .+...+-.++|.| .++.|+++-...-..||.++.......+ ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 99998543221111 11 11 2334588999999 6565666666666666666431111111 100
Q ss_pred CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 009022 354 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 354 ~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~ 385 (546)
.....+.+++++| .+.+++.+.....|..+|.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 1344678999999 5667777777888888884
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.013 Score=56.86 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEE
Q 009022 194 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD 273 (546)
Q Consensus 194 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 273 (546)
.|+||+........... .+ +.|.++.|..+ ..|+....||.+++||+.. .. .+...............+....
T Consensus 62 ~I~iys~sG~ll~~i~w-~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPW-DS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCEeEEEEE-CC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 49999977554333332 23 89999999874 5666777899999999873 33 2222211100000001122222
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCC-CCcceEE-------eecCCCcEEE-EEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 274 INPEKGVVLVADNFGFLYLVDARTNS-RSGEAIL-------IHRKGSKVVG-LHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 274 ~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-------~~~~~~~i~~-~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
+..+| +++-+.++.+++..-.... ....... .+... .+.. ..++. +....+....++.+.+.+-...
T Consensus 135 ~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSS-DRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccccc-ccccceEeec-CcceEEEEecCCEEEEEEcccc
Confidence 33344 3333445555554332211 1010000 00000 0111 22333 3444444445566664443211
Q ss_pred CCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCC
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 417 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 417 (546)
. . ....+++..|+.||++++||.-..+|.+.+......+. ...........+..+.|.-+
T Consensus 211 ~---~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~-------~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 211 K---Q---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK-------LCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c---c---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce-------eEEeecCcCCCCcEEEEECC
Confidence 1 1 22346899999999999999999999999987644322 22222333344556777654
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=5.9e-05 Score=74.63 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=82.5
Q ss_pred EEEEEecCCCCEEEEEeC----CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEE
Q 009022 218 NNIRFNPTNDGTVYAASS----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 293 (546)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 293 (546)
+-..|+|. ..+|+.++. .|+|.||- ++|.+...+..+ ..+.+++|+|..-.|+.|-.-|.+.+|
T Consensus 19 ti~SWHPs-ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----------~hatSLCWHpe~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 19 TISSWHPS-EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----------VHATSLCWHPEEFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred cccccCCC-CceeEEEEecCCCCceEEEEe-cCCCCCcccccc----------eehhhhccChHHHHHhhccccceeEEE
Confidence 34578888 778877764 57788873 556544333222 247789999999999999999999999
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
...+..... ....|..+|..+.|+| +|..++++..-|.|.+|.+.
T Consensus 87 ~~~~~e~ht---v~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTETHT---VVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCceeee---eccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 877654321 2345666999999999 99999999999999999875
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00053 Score=66.17 Aligned_cols=193 Identities=12% Similarity=0.147 Sum_probs=116.3
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEc--CC-CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe--E
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGD--KK-GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT--V 239 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i 239 (546)
.+..-...+..-+|+|++..+....- .. ..+.++++.++....... ..+.-..-+|+|++..++++...||. |
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 34444556777789999854333322 22 469999999887666653 34444567899995555566666776 5
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
.++|+.++...+ +.... . .-..-.|+|+|+.|+..+. .| .|+++++...... .+..... .-..
T Consensus 265 y~~dl~~~~~~~-Lt~~~-g--------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~--riT~~~~--~~~~ 330 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGF-G--------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT--RLTFSGG--GNSN 330 (425)
T ss_pred EEEcCCCCccee-cccCC-c--------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--EeeccCC--CCcC
Confidence 666777666333 21111 1 1124568999999888754 34 5666666665442 2222222 2237
Q ss_pred EEECCCCCCEEEEEeCC-Ce--EEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 317 LHCNPIQPELLLSCGND-HF--ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
-.|+| ++.+|+..+.. |. |.++|+.+... +..+..........|.|++..++..+..
T Consensus 331 p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCC-CCCEEEEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccC
Confidence 78999 89888877643 44 66666654332 3344445555567788888877665543
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0033 Score=60.57 Aligned_cols=204 Identities=14% Similarity=0.157 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCc
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGL 248 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 248 (546)
.-..+++++.+.+.+++...+..|.+.|..+.........+. ....++|+|+ +..+..+.. ++++.+.|..+.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCe
Confidence 345778889887677777778899999987777666654444 5678999999 555554443 6899999999888
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCc-ceEEeecCCCcEEEEEECCCCCCE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
.+........ ...++++|++..+++.. .++.|.++|........ ..............+.+.| ++..
T Consensus 152 ~~~~~~vG~~----------P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~ 220 (381)
T COG3391 152 VTATIPVGNT----------PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNR 220 (381)
T ss_pred EEEEEecCCC----------cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCE
Confidence 8877443221 26789999999777765 78899999976654331 1100112222456788999 7775
Q ss_pred EEEEeCC---CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCCC
Q 009022 327 LLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL 390 (546)
Q Consensus 327 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~~ 390 (546)
+.+.... +.+...|..+..........+.. ....+..+|.|..+.+... .+.+.+.|..+...
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 5554433 58888888654332111111222 4567899999999888744 48899998877554
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.97 E-value=0.013 Score=57.60 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCcEEEEEcCCC----cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC----------
Q 009022 172 RVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG---------- 237 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------- 237 (546)
.+..++++|+|+.++++-+..| .|+|+|+.+++.+..... ......+.|.++ +..|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d-~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDD-GKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTT-SSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCC-CCEEEEEEeCcccccccCCCC
Confidence 4446889999955444544444 599999999866554321 112234999999 66666554332
Q ss_pred -eEEEEECCCCcee--eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC----CcEEEEeCCCCC-CCcceEEeec
Q 009022 238 -TVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNS-RSGEAILIHR 309 (546)
Q Consensus 238 -~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~ 309 (546)
.|++|.+.+.... ..+...... .....+..++++++|+..... ..+++.++.... ..........
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 3788888777544 233222221 025678889999998875332 457888888751 1111222222
Q ss_pred C-CCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCCcee-eecCCCCcEEEEEEeCCCCEEEEE-eCCC--cEE
Q 009022 310 K-GSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTT-SQDN--RLR 381 (546)
Q Consensus 310 ~-~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~-s~dg--~i~ 381 (546)
. .+....+... .+.+++... ..+.|...++......... ....+...+.-..+...+.+|+.. ..++ .|+
T Consensus 275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 2 2223334333 333444332 3467777888765432212 223455533333333444455444 4444 588
Q ss_pred EEECC
Q 009022 382 IWDSI 386 (546)
Q Consensus 382 vwd~~ 386 (546)
++++.
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88887
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00026 Score=69.02 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=88.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 348 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 348 (546)
+.--+++..+++++.|+..|.+++|+-..+..... ......+.+....+++ ...++|.|+..|.|.++-+....+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 44455677899999999999999999776554322 2212333566677787 88899999999999999887644433
Q ss_pred eeeec----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 349 SLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 349 ~~~~~----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
..... .|...|++++|++++..|++|...|.|.+-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33222 3788999999999999999999999999988876
No 348
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0003 Score=66.23 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=92.4
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC------CCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
-+|.++.....|+--|+..++.+... ..+.. |+-+.+.|+. ...-+.|-.+..|+-||++-...- .+....
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q 423 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ 423 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee
Confidence 45566666677888899998887776 34444 7777787762 112344556788999998833221 111111
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
. ..........|++-. ...+|++|+.+|.|++||- .+....+ .+.+-+.+|..|..+. +|.+|++.+ +..|.
T Consensus 424 ~--kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKT--AlPgLG~~I~hVdvta-dGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 424 S--KQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKT--ALPGLGDAIKHVDVTA-DGKWILATC-KTYLL 495 (644)
T ss_pred c--cccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhh--cccccCCceeeEEeec-cCcEEEEec-ccEEE
Confidence 0 011111124444433 4567999999999999997 4433333 3344556899999998 888877655 66777
Q ss_pred EEECC
Q 009022 338 IWDIR 342 (546)
Q Consensus 338 iwd~~ 342 (546)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77764
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0028 Score=59.72 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=109.4
Q ss_pred cEEEEEcC----------CCcEEEEeCCCC-----ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 184 HILLSGDK----------KGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 184 ~~l~s~~~----------d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
.+|+.|.. .|.|.++++... +..........++|++++-.. + .|+++. ++.|.+|++...+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTS
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcc
Confidence 67777743 288999999884 333333345688999998763 4 444444 4789999999887
Q ss_pred -eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 -ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
........... .+.++.. .++++++|+.-..+.++...........+........++++.+.+ +++.+
T Consensus 119 ~l~~~~~~~~~~--------~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~ 187 (321)
T PF03178_consen 119 TLLKKAFYDSPF--------YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTI 187 (321)
T ss_dssp SEEEEEEE-BSS--------SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEE
T ss_pred cchhhheecceE--------EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEE
Confidence 44433332211 2455444 466999999999999886554222122223333344688888886 44699
Q ss_pred EEEeCCCeEEEEECCCCC----CCc-ee---eecCCCCcEEEE---EEeCC--CC------EEEEEeCCCcEEEE
Q 009022 328 LSCGNDHFARIWDIRRLE----AGS-SL---CDLPHKRVVNSA---YFSPS--GS------KILTTSQDNRLRIW 383 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~----~~~-~~---~~~~~~~~v~~~---~~~p~--~~------~l~s~s~dg~i~vw 383 (546)
+++..+|.|.++...... ... .+ ..+.....|+++ .+.|. +. .++.++.+|.|.+.
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999999875211 111 12 222345667777 44451 22 37777888988843
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.89 E-value=0.0027 Score=60.69 Aligned_cols=263 Identities=14% Similarity=0.148 Sum_probs=127.9
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCC-CCCCCc-----
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG-WHGPRT----- 265 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~----- 265 (546)
.+.+.|||+.++....... ....+....|+|+ ++.++... ++.|.++++.++...+........ ..+...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP--PPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS---EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcC--CccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 4679999999865544432 2577899999999 88888876 478999999887544332221111 011110
Q ss_pred --ccceEEEEecCCCCEEEEEeCC-Cc-----------------------------------EEEEeCCCCCCCcceEE-
Q 009022 266 --WRMLYGMDINPEKGVVLVADNF-GF-----------------------------------LYLVDARTNSRSGEAIL- 306 (546)
Q Consensus 266 --~~~v~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~i~d~~~~~~~~~~~~- 306 (546)
...-..+-|||++++|+....| .. +.++++.+++.......
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 1123567899999988876322 22 23344444332210000
Q ss_pred -eecCCCcEEEEEECCCCCCEEEEE--eCCC---eEEEEECCCCCCCceeeecCCCCcE---EEEEEe-CCCC-EEEEEe
Q 009022 307 -IHRKGSKVVGLHCNPIQPELLLSC--GNDH---FARIWDIRRLEAGSSLCDLPHKRVV---NSAYFS-PSGS-KILTTS 375 (546)
Q Consensus 307 -~~~~~~~i~~~~~~p~~~~~l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v---~~~~~~-p~~~-~l~s~s 375 (546)
.......+..+.|.+ ++..|+.. ..+. .+.++|..++.....+. ......| ..+.|. +++. +|....
T Consensus 178 ~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp HHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEE
Confidence 012234578889988 66633332 2222 46667776644322222 2222222 245554 5444 455555
Q ss_pred CCCcEEEE--ECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCC--CcCcceEEEECCchh
Q 009022 376 QDNRLRIW--DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG--AALHPIDFIDITTGQ 451 (546)
Q Consensus 376 ~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g--~~d~~i~iwd~~~~~ 451 (546)
.+|.-+|| +...+... .+....+.-. --+.|++.. ..+....++ .....|..-++..+.
T Consensus 256 ~~G~~hly~~~~~~~~~~-----~lT~G~~~V~---~i~~~d~~~---------~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGKPR-----QLTSGDWEVT---SILGWDEDN---------NRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp TTSSEEEEEEETTSSEEE-----ESS-SSS-EE---EEEEEECTS---------SEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cCCCcEEEEEccccccee-----ccccCceeec---ccceEcCCC---------CEEEEEecCCCCCceEEEEEEeCCCC
Confidence 67765554 44443310 1111111110 124555552 211111122 223455555666233
Q ss_pred hhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 452 LVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
.+..|....... ..+ .|||+|++++-
T Consensus 319 ~~~~LT~~~~~~-~~~-~~Spdg~y~v~ 344 (353)
T PF00930_consen 319 EPKCLTCEDGDH-YSA-SFSPDGKYYVD 344 (353)
T ss_dssp EEEESSTTSSTT-EEE-EE-TTSSEEEE
T ss_pred CeEeccCCCCCc-eEE-EECCCCCEEEE
Confidence 334443332222 344 89999998875
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.011 Score=59.49 Aligned_cols=158 Identities=12% Similarity=0.035 Sum_probs=91.0
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC---ceEEEEEecCCCCEEEEEe------CCCeEEEEECCCCceeeeeec
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 255 (546)
.++.++.++.|.-.|..+++.+......... .+++.-..- +..++.+. .+|.|..+|..+|+.+..+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4666778899999999998887765321111 122111111 23455543 268999999999998877654
Q ss_pred CCCCC-------------C----------CCCcccceEEEEecCCCCEEEEEeCC-----C-----------cEEEEeCC
Q 009022 256 NPNGW-------------H----------GPRTWRMLYGMDINPEKGVVLVADNF-----G-----------FLYLVDAR 296 (546)
Q Consensus 256 ~~~~~-------------~----------~~~~~~~v~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~ 296 (546)
..... . .+.....-..+++.+...+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 32210 0 00011112245677777777777633 2 56667777
Q ss_pred CCCCCcceEEeecCC-------CcEEEEEECCCCCC---EEEEEeCCCeEEEEECCCCCC
Q 009022 297 TNSRSGEAILIHRKG-------SKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEA 346 (546)
Q Consensus 297 ~~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~ 346 (546)
+++........ .|. ....-+.+.. ++. .++.+..+|.++++|.++++.
T Consensus 280 TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 280 TGKIKWHYQTT-PHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCEEEeeeCC-CCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 77765433221 111 1112222222 454 778899999999999987765
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.87 E-value=0.0034 Score=62.10 Aligned_cols=190 Identities=10% Similarity=0.040 Sum_probs=113.9
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC----CeEEEEECCCCceee
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTVSCTDLETGLALS 251 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 251 (546)
+-++|+|..+..+.-..+.+.+.|..+.+....+. -......+.++|+ +.++++.+.+ +++...+......+.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEE
Confidence 33456773222333445778888888776666553 2334567888998 7787777532 233333332222221
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC----CCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART----NSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.+.... ...+.++|++...+ ++.|.++|.++ ..... ..-.-+.....+.++| ++.++
T Consensus 275 vfni~~-------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~---~yIPVGKsPHGV~vSP-DGkyl 335 (635)
T PRK02888 275 VFNIAR-------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALT---RYVPVPKNPHGVNTSP-DGKYF 335 (635)
T ss_pred EEchHH-------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceE---EEEECCCCccceEECC-CCCEE
Confidence 111100 01245578877763 57899999987 22222 2222233678899999 88877
Q ss_pred EEEe-CCCeEEEEECCCCCCC--------c-eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 328 LSCG-NDHFARIWDIRRLEAG--------S-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 328 ~~~~-~dg~i~iwd~~~~~~~--------~-~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++++ .+.+|.|+|+.+.+.. . ......-...-...+|.++|....|.-.|..|..|++..
T Consensus 336 yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 336 IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 6655 6899999999864420 0 111111222234578999999888888899999999875
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=1e-05 Score=67.62 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=73.0
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
+..-+.+|.|+-++++..+..-.-. .-+... .....-+..+++|+.+|.|.+|...-.. .+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g---------------~~ 93 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG---------------AH 93 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhhcc---eeecccCceEEeecccceEEEecCCccc---------------hH
Confidence 4445678889888886433211000 011111 1111245678999999999999876211 00
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEe--c-CC
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG--S-SR 483 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sg--s-dg 483 (546)
...+.....+- ......++--...+++..++.|+.|++.-++.+.....|....+..+ ..+..+++|+.+ | |.
T Consensus 94 ~d~~~s~~e~i---~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~-ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 94 SDRVCSGEESI---DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL-IVVGSDEFLKIADTSHDR 169 (238)
T ss_pred HHhhhcccccc---eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee-EEecCCceEEeeccccch
Confidence 00001111111 01111122211113789999999999988887766655542333322 234445555554 4 66
Q ss_pred cEEEEcCCC
Q 009022 484 SIFIWRPKE 492 (546)
Q Consensus 484 ~i~vwd~~~ 492 (546)
.++.|++..
T Consensus 170 ~~k~W~ve~ 178 (238)
T KOG2444|consen 170 VLKKWNVEK 178 (238)
T ss_pred hhhhcchhh
Confidence 666666543
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0052 Score=58.83 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=117.4
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce------------------------------------------eEEe
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------------------------------------------KIVY 209 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------------~~~~ 209 (546)
.|+.+.|++.. .-|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 4689999999999997632110 1111
Q ss_pred cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-----CC---CEE
Q 009022 210 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EK---GVV 281 (546)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~---~~l 281 (546)
.....++|++++.+. =.+++.|..+|.+.|.|++....+..-.... ..........++++.|+. ++ -++
T Consensus 82 ~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 123468899999874 5799999999999999999888776644433 111122223477777752 33 478
Q ss_pred EEEeCCCcEEEEeCCC-CC--CCcceEEee-cCCCcEEEEE-ECCCC-------------------CCEEEEEeCCCeEE
Q 009022 282 LVADNFGFLYLVDART-NS--RSGEAILIH-RKGSKVVGLH-CNPIQ-------------------PELLLSCGNDHFAR 337 (546)
Q Consensus 282 ~~~~~dg~i~i~d~~~-~~--~~~~~~~~~-~~~~~i~~~~-~~p~~-------------------~~~l~~~~~dg~i~ 337 (546)
++|+..|.+.+|.+.- .. ......... .+.++|..|. ++... -..++.......++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 9999999999998752 11 111111111 2334555444 21110 01233334477899
Q ss_pred EEECCCCCCCceeeecCCCCcEEEEEEe-----CCCCEEEEEeCCCcEEEEECCCC
Q 009022 338 IWDIRRLEAGSSLCDLPHKRVVNSAYFS-----PSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
++...+.+.. .+..........+++- ..+..|++-..+|.|++|.+..-
T Consensus 239 v~~~~~~k~~--~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 239 VFKPPKSKGA--HKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp EE-TT---EE--EEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred EEeCCCCccc--ceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 9998754432 2222222233344453 25667888889999999998653
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.044 Score=52.86 Aligned_cols=275 Identities=16% Similarity=0.180 Sum_probs=159.6
Q ss_pred EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe
Q 009022 195 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 195 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 274 (546)
+.+++..+......+. .+. ....+...|.+....++-.....+...+.............. .....+++
T Consensus 13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---------~~p~~i~v 81 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---------VYPAGVAV 81 (381)
T ss_pred eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---------ccccceee
Confidence 5555555544444332 111 456677777732333433333345555444211111111110 12456778
Q ss_pred cCCCCEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCCCcee
Q 009022 275 NPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSL 350 (546)
Q Consensus 275 ~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~ 350 (546)
++.+..+++ ...+..|.+.|..+....... ..+.....++++| ++..+.++.. ++++.+.|..+......+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~----~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSI----PVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEe----eeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 888875555 445689999997665544322 2222567899999 6655555544 688999998765543332
Q ss_pred eecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeee
Q 009022 351 CDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 429 (546)
Q Consensus 351 ~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~ 429 (546)
. .+. .+ ..+++.|+|..+++.. .++.|.+.|........ ... .........+..+.++|+ |.+
T Consensus 157 ~-vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~~---------g~~ 220 (381)
T COG3391 157 P-VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDPD---------GNR 220 (381)
T ss_pred e-cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECCC---------CCE
Confidence 1 122 23 7899999999766655 68999999976654431 000 001223333456778887 332
Q ss_pred eeecCCCCcCcceEEEECCchhhhHh-hcCCCCCcccceeeecCCCcEEEEec--CCcEEEEcCCCCCccceeeccc
Q 009022 430 ISENYNGAALHPIDFIDITTGQLVAE-VMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 430 ~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+-....++.++.+.+.|..++..... +..... ....+ .++|+|.++.... .+.+.+-|..+......+....
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v-~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV-AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce-eECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 22112334467899999998877665 222222 33344 7999999999875 5899999988877766654433
No 356
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.013 Score=51.60 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=111.1
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
+.|-...|.+|.|+|+. +.|++......-.||=...+..+..+...--...-.|.+..+ +.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEc
Confidence 45556669999999998 456666656666666656666666553222334456778776 7777777778999988877
Q ss_pred CCceeeeee---cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecC-------CCcEE
Q 009022 246 TGLALSLMN---VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK-------GSKVV 315 (546)
Q Consensus 246 ~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~i~ 315 (546)
......... ..-... .......-.++|.|....|+++-.-.-+.||.+............... -..+.
T Consensus 159 ~~t~~~~~~~~~i~L~~~--~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 159 ADTTVISAKVQKIPLGTT--NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CCccEEeccceEEecccc--CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 653332221 111111 111335789999999999999988888888776643211111010000 12477
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
++.|++..+.+|+-+..++.|.-.|..
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecC
Confidence 889998778888888888888888875
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0059 Score=45.60 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=66.3
Q ss_pred eEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 173 VTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 173 V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
|++|++.. +|.+-|++|+.|..||||+-. ..+..+. -...|++++-.. ...|+.+..+|+|-+|+-. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcC--CCEEEEEecCCEEEEEeCc--ce
Confidence 56666654 555789999999999999854 3444442 556778877665 5789999999999999753 22
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecC---CC-CEEEEEeCCCcEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINP---EK-GVVLVADNFGFLY 291 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~ 291 (546)
+..++... .+.++.+.. +| ..|++|-.+|.|-
T Consensus 74 lWRiKSK~----------~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKN----------QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCC----------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33332211 245555433 22 3678887777664
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.66 E-value=0.031 Score=49.35 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=111.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 172 RVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
-...+.|..+| .++-+.+.-| .|+.+|+.+++..........----.++... +.++...-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 34568887777 6777777666 7999999998866554322333334455553 44555566789999999999999
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC---cEEEEEECCCCCCE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS---KVVGLHCNPIQPEL 326 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~i~~~~~~p~~~~~ 326 (546)
+..+.....+ +.++ .++..|+.+.....|+++|..+.+....+... ..+. .++-+.|. ++.+
T Consensus 123 ~~~~~y~~EG----------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i--~G~I 187 (264)
T PF05096_consen 123 IGTFPYPGEG----------WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI--NGKI 187 (264)
T ss_dssp EEEEE-SSS------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE--TTEE
T ss_pred EEEEecCCcc----------eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE--cCEE
Confidence 9888776543 3444 57888999988999999999887655443222 2222 35556665 4555
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeee-------------cCCCCcEEEEEEeCCCCE-EEEE
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCD-------------LPHKRVVNSAYFSPSGSK-ILTT 374 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~p~~~~-l~s~ 374 (546)
.|=.-....|...|..++.....+-. .+...-.+.|++.|.... ++||
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555556666667665443221110 011356899999995554 4555
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.66 E-value=0.00013 Score=43.44 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=32.9
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEe
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 199 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd 199 (546)
+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 446677899999999999988 6899999999999996
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.033 Score=48.06 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=92.1
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009022 222 FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 301 (546)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 301 (546)
..++...+++.|+..+.+..-|..+|+......+.. .+.+-+.- -|++++.|+..|.+++.+.+++.+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~----------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCc----------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe
Confidence 344446788889999999999999998876543322 12221111 3778999999999999999998766
Q ss_pred cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-CCCcEEEEEEeC-CCCEEEEEeCCCc
Q 009022 302 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSP-SGSKILTTSQDNR 379 (546)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p-~~~~l~s~s~dg~ 379 (546)
........- . ......+ ++..+..|+.|++.+..|.++... +.... ..+...+-++.| ++. |..+...|.
T Consensus 87 w~f~~~~~v--k-~~a~~d~-~~glIycgshd~~~yalD~~~~~c---VykskcgG~~f~sP~i~~g~~s-ly~a~t~G~ 158 (354)
T KOG4649|consen 87 WNFVILETV--K-VRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC---VYKSKCGGGTFVSPVIAPGDGS-LYAAITAGA 158 (354)
T ss_pred eeeeehhhh--c-cceEEcC-CCceEEEecCCCcEEEecccccce---EEecccCCceeccceecCCCce-EEEEeccce
Confidence 544333221 1 1233455 889999999999999999986544 22221 222233455666 444 444445555
Q ss_pred EEEEECC
Q 009022 380 LRIWDSI 386 (546)
Q Consensus 380 i~vwd~~ 386 (546)
+.--..+
T Consensus 159 vlavt~~ 165 (354)
T KOG4649|consen 159 VLAVTKN 165 (354)
T ss_pred EEEEccC
Confidence 5444443
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.015 Score=54.77 Aligned_cols=178 Identities=11% Similarity=0.053 Sum_probs=105.5
Q ss_pred cEEEEeCCCCceeEEecccCCCceEEEEEec---C---CCCEEEEEeC----------CCeEEEEECCCC----ceeeee
Q 009022 194 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP---T---NDGTVYAASS----------DGTVSCTDLETG----LALSLM 253 (546)
Q Consensus 194 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~---~~~~l~s~~~----------dg~i~iwd~~~~----~~~~~~ 253 (546)
.|+|.|..+.+.+..+.-.....+.+++... + ...+|+.|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5778887776655554333344455444332 1 1456776653 289999999884 122211
Q ss_pred -ecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 254 -NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 254 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
..... .+|++++-- +.+|+++.. +.|.+|++...+..... ........+.++.... +++++|..
T Consensus 83 ~~~~~~--------g~V~ai~~~--~~~lv~~~g-~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~---~~I~vgD~ 147 (321)
T PF03178_consen 83 HSTEVK--------GPVTAICSF--NGRLVVAVG-NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFK---NYILVGDA 147 (321)
T ss_dssp EEEEES--------S-EEEEEEE--TTEEEEEET-TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEET---TEEEEEES
T ss_pred EEEeec--------CcceEhhhh--CCEEEEeec-CEEEEEEccCcccchhh-heecceEEEEEEeccc---cEEEEEEc
Confidence 11111 247777655 334555443 89999999887722222 2233333677777754 69999998
Q ss_pred CCeEEEEECCCCCC-CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 333 DHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 333 dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
...|.++..+.... ...+..-.....++++.|-++++.++++..+|.|.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888875543111 1122222456678999998766799999999999999875
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.57 E-value=0.02 Score=56.28 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=124.9
Q ss_pred eEEEEEecCCCCEEEEE-eCCC----eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC---
Q 009022 217 VNNIRFNPTNDGTVYAA-SSDG----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--- 288 (546)
Q Consensus 217 v~~~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 288 (546)
+..+.++|+ +++|+.+ +..| .|+++|+.+++.+...-.. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEEeCCCCEEEEEEeCcccc
Confidence 446788999 7776654 4444 4999999999766432110 0123499999988877764332
Q ss_pred --------cEEEEeCCCCCCCcceEEeecCCCc-EEEEEECCCCCCEEEEEeC---C-CeEEEEECCCC--CCCceeeec
Q 009022 289 --------FLYLVDARTNSRSGEAILIHRKGSK-VVGLHCNPIQPELLLSCGN---D-HFARIWDIRRL--EAGSSLCDL 353 (546)
Q Consensus 289 --------~i~i~d~~~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~~~~~---d-g~i~iwd~~~~--~~~~~~~~~ 353 (546)
.|+.|.+.+....-.++........ ...+..++ ++++|+.... + ..+++.++... .........
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 3778888775543222222222223 67888898 8887765432 2 45788888753 111111112
Q ss_pred CCCCcEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC--CCceeEEee
Q 009022 354 PHKRVVNSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP--SESLAVIGR 428 (546)
Q Consensus 354 ~~~~~v~~~~~~p~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~g~ 428 (546)
.....+....-+..+.+++.... .+.|...++....... .. .....+... ...+.+.+.
T Consensus 274 ~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~--~~--------------~~l~~~~~~~~l~~~~~~~~ 337 (414)
T PF02897_consen 274 PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE--WW--------------TVLIPEDEDVSLEDVSLFKD 337 (414)
T ss_dssp ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG--EE--------------EEEE--SSSEEEEEEEEETT
T ss_pred CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccc--ce--------------eEEcCCCCceeEEEEEEECC
Confidence 23333433333334444443322 2445555554432100 00 011111110 112222244
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEE--Eec---CCcEEEEcCCCCCc
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA--SGS---SRSIFIWRPKEKSE 495 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~--sgs---dg~i~vwd~~~~~~ 495 (546)
+++..+.-.....|+++++..+.....+.....+.+..+ ...+++..|. ..| -++|..||+.+++.
T Consensus 338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGV-SGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEE-ES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEecc-CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 444333334456799999984444444444443444444 4445444333 233 38999999999874
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.034 Score=54.14 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
..-....+.++|+ +++++.++ +|...|+..........- ....+.|.+. +.+|+-.....|.+
T Consensus 31 ~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~~G--------------~g~~~vw~~~-n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 31 CEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKAFG--------------SGLSFVWSSR-NRYAVLESSSTIKI 93 (443)
T ss_dssp -SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEEEE--------------E-SEEEE-TS-SEEEEE-TTS-EEE
T ss_pred CCcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCcccccC--------------ceeEEEEecC-ccEEEEECCCeEEE
Confidence 3445788999998 88888854 688888885444333221 3456788884 44666666888999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 372 (546)
+.--.......+ ... ..+..|-. |.+|+..+ ++.|.+||+.+.+ .+...... +|..+.|++++.+++
T Consensus 94 ~kn~~~~~~k~i-~~~---~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~---~i~~i~v~-~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 94 YKNFKNEVVKSI-KLP---FSVEKIFG----GNLLGVKS-SDFICFYDWETGK---LIRRIDVS-AVKYVIWSDDGELVA 160 (443)
T ss_dssp EETTEE-TT------S---S-EEEEE-----SSSEEEEE-TTEEEEE-TTT-----EEEEESS--E-EEEEE-TTSSEEE
T ss_pred EEcCccccceEE-cCC---cccceEEc----CcEEEEEC-CCCEEEEEhhHcc---eeeEEecC-CCcEEEEECCCCEEE
Confidence 633222221111 111 12344432 56666665 4489999997543 45544433 489999999999999
Q ss_pred EEeCCCcEEEEECC
Q 009022 373 TTSQDNRLRIWDSI 386 (546)
Q Consensus 373 s~s~dg~i~vwd~~ 386 (546)
..+.+ .+.|++..
T Consensus 161 l~t~~-~i~il~~~ 173 (443)
T PF04053_consen 161 LVTKD-SIYILKYN 173 (443)
T ss_dssp EE-S--SEEEEEE-
T ss_pred EEeCC-eEEEEEec
Confidence 98755 68887754
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00062 Score=65.62 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEE
Q 009022 214 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 293 (546)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 293 (546)
...|.-+.|+|. -.++|.+..+|.|.+..+. .+.+..+..+... ...+++|.|||+.|++|-.||.|++.
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--------v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--------VTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCc--------cceeeeecCCCCEEEEEecCCeEEEE
Confidence 456788999999 9999999999999999988 6667777655443 12499999999999999999999999
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|+.++..+..... .....|.++.|.|
T Consensus 90 Dve~~~~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred EccCCCceecccc--ccccchheeeccc
Confidence 9999876544212 2223688888865
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.44 E-value=0.0038 Score=59.74 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=108.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-------ccCCCceEEEEEec---CC----CCE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNP---TN----DGT 229 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~---~~----~~~ 229 (546)
..+....++|++++.|.-| ++|.|..+|.+.|.|++....+.... ......|+++.|.- .+ .-+
T Consensus 80 ~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 4566678999999999888 79999999999999998776555421 12344688888862 11 246
Q ss_pred EEEEeCCCeEEEEECCC---CceeeeeecCCCCCCCCCcccceEEEE-ecCC--------------------CCEEEEEe
Q 009022 230 VYAASSDGTVSCTDLET---GLALSLMNVNPNGWHGPRTWRMLYGMD-INPE--------------------KGVVLVAD 285 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~ 285 (546)
+++|+..|.+.+|.+.- +.....+...... .. ..+..|. ++.+ -.-+++..
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~--~~---~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN--HD---SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS-------EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeecccc--CC---CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 88899999999997751 1111111111000 00 1222222 2111 12344455
Q ss_pred CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC----CCCCEEEEEeCCCeEEEEECCCCCCCceeeec--CCCCcE
Q 009022 286 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP----IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVV 359 (546)
Q Consensus 286 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v 359 (546)
....++++...+.+...+.. .....+..+.+-+ ..+..|++-..+|.|++|.+...+....+... .....+
T Consensus 233 Se~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 56889999888765443322 2211233334421 14567888889999999999765553333321 122234
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 360 NSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
...+++++|..++..+.. .+.++.+
T Consensus 310 ~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred cccEECCCCCEEEEeCcc-cEEEEEE
Confidence 456778889877766543 3444433
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.072 Score=46.79 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=80.9
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe-EEEEECCCCceeeeeecC
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT-VSCTDLETGLALSLMNVN 256 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~ 256 (546)
..++|...+++.+.+|.+.- ... -...-..|+|+|..+.-++.+-.-|+ ..++|....+...++...
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~----------~~~--lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~ 110 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVF----------ATA--LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ 110 (366)
T ss_pred eccCCceeEEEEccCCceee----------eee--cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc
Confidence 34566555666666665432 111 12233457777775555666655554 578899888777665443
Q ss_pred CC-CCCCCCcccceEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 257 PN-GWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 257 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.. .+.+| =.|+|+|.+|.+.-+ -|.|-+||.+.+-. ..-.+..++-....+.|.+ +++.++.+
T Consensus 111 ~~RHfyGH--------Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq--rvgE~~t~GiGpHev~lm~-DGrtlvva 179 (366)
T COG3490 111 EGRHFYGH--------GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ--RVGEFSTHGIGPHEVTLMA-DGRTLVVA 179 (366)
T ss_pred cCceeecc--------cccCCCCcEEEeecCCCCCCCceEEEEecccccc--eecccccCCcCcceeEEec-CCcEEEEe
Confidence 32 22222 348999999998743 37999999985432 2223444554667888999 99988876
Q ss_pred e
Q 009022 331 G 331 (546)
Q Consensus 331 ~ 331 (546)
.
T Consensus 180 n 180 (366)
T COG3490 180 N 180 (366)
T ss_pred C
Confidence 4
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.011 Score=57.21 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=93.8
Q ss_pred CCCceEEEEEecCCCCEEEEEe---CC-CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CC
Q 009022 213 HSCIVNNIRFNPTNDGTVYAAS---SD-GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF 287 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 287 (546)
-...+..-+|+|+ +..++..+ .. ..+.++++.++........... -...+|+|+|+.|+... .+
T Consensus 191 ~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~----------~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 191 SGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN----------NGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred cCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeeccCCc----------cCCccCCCCCCEEEEEECCC
Confidence 4456677789998 55544432 22 3599999999887766653321 33456999999887763 44
Q ss_pred C--cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCe--EEEEECCCCCCCceeeecCCCCcEEEE
Q 009022 288 G--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHF--ARIWDIRRLEAGSSLCDLPHKRVVNSA 362 (546)
Q Consensus 288 g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~ 362 (546)
| .|+++|+....... +....+.-..-.|+| +|+.|+-.+ ..|. |.++++..... ..+. ..-... ...
T Consensus 260 g~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~~~~-~~p 331 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSGGGN-SNP 331 (425)
T ss_pred CCccEEEEcCCCCccee----cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccCCCC-cCc
Confidence 4 67777887766332 122222333668999 888776655 4454 55556543332 2222 211111 277
Q ss_pred EEeCCCCEEEEEeCC-Cc--EEEEECCCC
Q 009022 363 YFSPSGSKILTTSQD-NR--LRIWDSIFG 388 (546)
Q Consensus 363 ~~~p~~~~l~s~s~d-g~--i~vwd~~~~ 388 (546)
.|+|+|++|+..+.. |. |.+.++.++
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 899999999887743 43 555555443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.023 Score=54.13 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=93.9
Q ss_pred CCEE-EEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC-------EEEEEeCCCcEEEEeCCCC
Q 009022 227 DGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-------VVLVADNFGFLYLVDARTN 298 (546)
Q Consensus 227 ~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~ 298 (546)
.++| .++.....|+-.|++.|+.+.....+.. |+-+.+.|+.+ .-++|-.+..|.-||.+-.
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence 3444 4455566789999999999998887654 44555666432 3455677889999999854
Q ss_pred CCC-cceEEeec--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 299 SRS-GEAILIHR--KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 299 ~~~-~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
... ......+. ......|++-. ...+|++|+.+|.|++||-.-......+ .+...+|..|..+.+|++|+..+
T Consensus 415 ~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAl--PgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 415 GKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTAL--PGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred Ccceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcc--cccCCceeeEEeeccCcEEEEec
Confidence 331 11111111 12234555544 4568999999999999996321111122 25677899999999999887665
Q ss_pred CCCcEEEEECC
Q 009022 376 QDNRLRIWDSI 386 (546)
Q Consensus 376 ~dg~i~vwd~~ 386 (546)
+..+.+.++.
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 5677777764
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.35 E-value=0.25 Score=51.14 Aligned_cols=286 Identities=15% Similarity=0.121 Sum_probs=142.1
Q ss_pred CCCeEEEEEcCC--CCc---EEEEEcCCCcEEEEeCCC-CceeEEecc---cCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 170 SRRVTCLEFHPT--NNH---ILLSGDKKGQVGVWDFYK-VSEKIVYGN---IHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 170 ~~~V~~l~~~~~--~~~---~l~s~~~d~~i~iwd~~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
...|.|+.++|- +++ +++.|.++..+.+.-... ......... .-...|.-..|--+ ..+|+++..||.+.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d-~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD-IHYLLVALGDGALL 608 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc-ceEEEEEcCCceEE
Confidence 457999999985 334 899998877666654332 222221111 12234555556555 78999999999987
Q ss_pred EEECC--CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-------------------------------
Q 009022 241 CTDLE--TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------------------------------- 287 (546)
Q Consensus 241 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------- 287 (546)
.|.+. ++.....-+.+-.. .++.--.|+..++.-+.+..|
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt-------~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~ 681 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGT-------QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSD 681 (1096)
T ss_pred EEEEEcccceEccccccccCC-------CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccc
Confidence 76554 44322111111000 011111222222211111111
Q ss_pred -----------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC--------------CeEEEEECC
Q 009022 288 -----------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--------------HFARIWDIR 342 (546)
Q Consensus 288 -----------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d--------------g~i~iwd~~ 342 (546)
+.+.+.-+..-+.... ..-.-......+++.+ ....+.+.+.. ..++++|-+
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~i--rtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHI--RTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcce--eeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 2333332222111110 0011122456667765 44444443321 246677765
Q ss_pred CCCCCceeeecCCC---CcEEEEEEeCC-CCEEEEEeC----------CCcEEEEECCCCCCCCCCcceeeccCCcccCC
Q 009022 343 RLEAGSSLCDLPHK---RVVNSAYFSPS-GSKILTTSQ----------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 408 (546)
Q Consensus 343 ~~~~~~~~~~~~~~---~~v~~~~~~p~-~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 408 (546)
+.+..... .+... -.|.++.|..+ +.++++|.. .|.|.||....+..+. ..+.....+..
T Consensus 759 Tf~vl~~h-ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~----~v~e~~v~Gav- 832 (1096)
T KOG1897|consen 759 TFEVLSSH-EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE----LVAETVVKGAV- 832 (1096)
T ss_pred ceeEEeec-cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee----eeeeeeeccce-
Confidence 43321111 11122 23455558776 777887753 4677777766521111 11111111111
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEE
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFI 487 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~v 487 (546)
+ ......|+++| +-...|++|+..+.+.++.-..+. ..+..+ .....|..++.|. =++|.+
T Consensus 833 -~----------aL~~fngkllA-----~In~~vrLye~t~~~eLr~e~~~~-~~~~aL-~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 833 -Y----------ALVEFNGKLLA-----GINQSVRLYEWTTERELRIECNIS-NPIIAL-DLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred -e----------ehhhhCCeEEE-----ecCcEEEEEEccccceehhhhccc-CCeEEE-EEEecCcEEEEeeccceEEE
Confidence 0 11222377776 445679999999887666554444 555555 7788899999998 566655
Q ss_pred EcC
Q 009022 488 WRP 490 (546)
Q Consensus 488 wd~ 490 (546)
-..
T Consensus 895 l~y 897 (1096)
T KOG1897|consen 895 LQY 897 (1096)
T ss_pred EEE
Confidence 443
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0013 Score=63.41 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceE-EEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN-NIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
-.|.-+.|+|.- .++|++..+|.|.+..+. .+.+..+ ..|...++ +++|.|+ |++|+.|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCCCc
Confidence 467789999998 589999999999999988 5566666 44666666 9999999 99999999999999999999987
Q ss_pred eeee
Q 009022 250 LSLM 253 (546)
Q Consensus 250 ~~~~ 253 (546)
+...
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 7664
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.29 E-value=0.013 Score=57.05 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=92.4
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
+....-....|+++|+| ++++.++ +|...|+......... .+.-..++|.+. + .+|+-...+.|.|+.--
T Consensus 28 lg~~~~~p~~ls~npng-r~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~-n-~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNG-RFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSR-N-RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTS-SEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TS-S-EEEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCC-CEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecC-c-cEEEEECCCeEEEEEcC
Confidence 33344457899999999 6666654 6788888743332221 234466889884 4 56666668889996322
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+......+..+. .+..|-. |.+|+..+.+ .|.+||+.+++.+.++ ... +|..+.|++ ++.
T Consensus 98 ~~~~~k~i~~~~----------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i---~v~--~vk~V~Ws~-~g~ 157 (443)
T PF04053_consen 98 KNEVVKSIKLPF----------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRI---DVS--AVKYVIWSD-DGE 157 (443)
T ss_dssp EE-TT-----SS-----------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE---SS---E-EEEEE-T-TSS
T ss_pred ccccceEEcCCc----------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEE---ecC--CCcEEEEEC-CCC
Confidence 222222222211 1333322 7777777654 8999999987655432 221 489999999 888
Q ss_pred EEEEEeCCCeEEEEECCCC------C--CCceeeecCC-CCcEEEEEEeCCCCEEEEEeCCCcEEE
Q 009022 326 LLLSCGNDHFARIWDIRRL------E--AGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRI 382 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~------~--~~~~~~~~~~-~~~v~~~~~~p~~~~l~s~s~dg~i~v 382 (546)
+++..+. ..+.|++.... . ....+..... ...|.+.+|..+ .|+-.+.. .|+.
T Consensus 158 ~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 158 LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 8888874 46777775421 0 0012322322 567888999755 34333333 5655
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.047 Score=40.87 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=66.3
Q ss_pred eEEEEecC---C-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 269 LYGMDINP---E-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 269 v~~~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
|++|++.. + .+.|++|+.|..|++|+-.. .+........|++++-.. ...|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCc--
Confidence 45555543 2 36899999999999997543 111122233788888775 4779999999999999862
Q ss_pred CCCceeeecCCCCcEEEEEEeC-CC---CEEEEEeCCCcEE
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSP-SG---SKILTTSQDNRLR 381 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p-~~---~~l~s~s~dg~i~ 381 (546)
. .+........++++++.. ++ ..|++|-.+|.|-
T Consensus 72 --~-RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 --Q-RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --c-eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 222333445577887765 32 3688888888764
No 373
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.15 E-value=0.037 Score=52.90 Aligned_cols=216 Identities=13% Similarity=0.127 Sum_probs=109.5
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-----ecC
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-----HRK 310 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~ 310 (546)
.+.+.+||+.+++....... ...+....|+|+|+.++.... +.|+++++.++......... .+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~----------~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~ 90 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP----------PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGV 90 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E----------ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB
T ss_pred ceeEEEEecCCCceEECcCC----------ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCc
Confidence 46799999999876654433 114778899999999998864 78999988765322111000 000
Q ss_pred ---------CCcEEEEEECCCCCCEEEEEeCC-Ce-----------------------------------EEEEECCCCC
Q 009022 311 ---------GSKVVGLHCNPIQPELLLSCGND-HF-----------------------------------ARIWDIRRLE 345 (546)
Q Consensus 311 ---------~~~i~~~~~~p~~~~~l~~~~~d-g~-----------------------------------i~iwd~~~~~ 345 (546)
-..-..+-|+| ++++|+....| .. +.|+|+.+++
T Consensus 91 ~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 91 PDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK 169 (353)
T ss_dssp --HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC
T ss_pred cceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc
Confidence 11235688999 88887765422 11 3334443333
Q ss_pred CCceeee---cCCCCcEEEEEEeCCCCEEEEEe--CCC---cEEEEECCCCCCCCCCcceeeccCCcccCCc-eeEEec-
Q 009022 346 AGSSLCD---LPHKRVVNSAYFSPSGSKILTTS--QDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWD- 415 (546)
Q Consensus 346 ~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~s--~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 415 (546)
....-.. .....-+..+.|.+++..|+..- .+. .+.+.|..++.... .........+.. ....|.
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-----~~~e~~~~Wv~~~~~~~~~~ 244 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-----VLEETSDGWVDVYDPPHFLG 244 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-----EEEEESSSSSSSSSEEEE-T
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-----EEEecCCcceeeeccccccc
Confidence 2111101 12344578899999888444332 222 36666776654311 111111122211 122222
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
++. +.++... ....-..|.+++...+... .+..+. -.|..+..|+++++.|+.
T Consensus 245 ~~~--------~~~l~~s-~~~G~~hly~~~~~~~~~~-~lT~G~-~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 245 PDG--------NEFLWIS-ERDGYRHLYLYDLDGGKPR-QLTSGD-WEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp TTS--------SEEEEEE-ETTSSEEEEEEETTSSEEE-ESS-SS-S-EEEEEEEECTSSEEEE
T ss_pred CCC--------CEEEEEE-EcCCCcEEEEEccccccee-ccccCc-eeecccceEcCCCCEEEE
Confidence 332 1111110 1222456777777766533 343333 455556689998776653
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.13 E-value=0.07 Score=54.20 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCcEEEEEc-----CCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-CeEEEE
Q 009022 171 RRVTCLEFHPTNNHILLSGD-----KKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-GTVSCT 242 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iw 242 (546)
..+.+.+++|+|.+++++.. .|. .|.+++.... . ..+..+. ..+.-.|+|+ +..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~g~--~~t~PsWspD-G~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLEGH--SLTRPSWSLD-ADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeecCC--CCCCceECCC-CCceEEEecCcceEEEe
Confidence 46788999999965544441 233 4555554322 2 2222232 3788899999 7777776543 223333
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE---EeCCCCC-CCcceEEe-ecCCCcEEEE
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL---VDARTNS-RSGEAILI-HRKGSKVVGL 317 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~~~~~~~-~~~~~~i~~~ 317 (546)
+-.....+..+......... .....|..+.|+|||..++... .|.|++ -....+. .+...... ......+..+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 32221122222221111000 1112599999999999988876 477777 3333332 11111112 1222346889
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCcee-eecCCCCcEEEEEEeCCCCEEEEEeCCCcE
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRL 380 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i 380 (546)
.|.+ ++.+ +++..++...+|.+.-....... ..-.....+..|+-+++ .++....++.+
T Consensus 503 ~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9998 6664 45555554445544322221111 11123566777777763 35555556533
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.063 Score=47.53 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=107.9
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
+-...|.++.|+|+ .+.|++......-.+|=...|+.++.+....-. ..-.|.+..++++.++--.++.+.
T Consensus 83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccC--------ChhHeEEecCCEEEEEehhcceEE
Confidence 34455999999999 888888877777778877789999888664321 255678888888888888889998
Q ss_pred EEeCCCCCCCcce----EE---eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CC-------C
Q 009022 292 LVDARTNSRSGEA----IL---IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH-------K 356 (546)
Q Consensus 292 i~d~~~~~~~~~~----~~---~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-------~ 356 (546)
++.+......... +. ........-.++|.| ....|..+-...-+.||.+............ .+ -
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 8877654322111 11 111133577899999 5566666666666777766532211111111 11 2
Q ss_pred CcEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 009022 357 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 357 ~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~ 386 (546)
..|.++.|++ .+.+|+-+..++.+.-.|..
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecC
Confidence 3477888988 56667777777777777764
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.013 Score=60.51 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
-+++.|+..|.+-..|+...-........-.++|++++|+.+ +..++.|-.+|.|.+||+..++..+.+..+..+..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t-- 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT-- 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeecCCccc--
Confidence 468889989999999987643322222334679999999999 99999999999999999999999888876654322
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
.+..+.+..++..++++...|.++-
T Consensus 177 ----~vi~v~~t~~nS~llt~D~~Gsf~~ 201 (1206)
T KOG2079|consen 177 ----GVIFVGRTSQNSKLLTSDTGGSFWK 201 (1206)
T ss_pred ----eEEEEEEeCCCcEEEEccCCCceEE
Confidence 2455556666668888888887443
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.0014 Score=55.29 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=60.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CC
Q 009022 277 EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH 355 (546)
Q Consensus 277 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 355 (546)
-+..+++|+.+|.|++|................ ..|.++.-.-.++.+..++..+|.|+.|++. +.+.+-.. +|
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~---p~k~~g~~g~h 143 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIK---PNKVLGYVGQH 143 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccc---cCceeeeeccc
Confidence 456799999999999998874322221111111 1333333332255688899999999999984 33334333 34
Q ss_pred C-CcEEEEEEeCCCCEEEEE--eCCCcEEEEECC
Q 009022 356 K-RVVNSAYFSPSGSKILTT--SQDNRLRIWDSI 386 (546)
Q Consensus 356 ~-~~v~~~~~~p~~~~l~s~--s~dg~i~vwd~~ 386 (546)
. .++..+..+..+..++.+ |.|..++.|++.
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4 344444444445555555 555556666554
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.2 Score=46.22 Aligned_cols=226 Identities=15% Similarity=0.107 Sum_probs=114.8
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009022 221 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 300 (546)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 300 (546)
.|.+..+.++.+--..+.|+-|+..++.... +..+. .+.++..-..+..|+++.. -+.+++..++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~----------~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPG----------GFSSGALIDAGGRLIACEH--GVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCC----------CcccceeecCCCeEEEEcc--ccEEEeccCCce
Confidence 4667634466666667888889887665432 22211 1334444444444544432 345555543332
Q ss_pred CcceEEe--ecCCCcEEEEEECCCCCCEEEEEeC-----------CCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeC
Q 009022 301 SGEAILI--HRKGSKVVGLHCNPIQPELLLSCGN-----------DHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP 366 (546)
Q Consensus 301 ~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p 366 (546)
....... .......+.+...| ++.+.++... -|.|+.++.. ....... .+-..-+.|+|||
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDDDLTIPNGLAFSP 172 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecCcEEecCceEECC
Confidence 1111110 11113466778888 7776665443 1335555531 2222222 3345567899999
Q ss_pred CCCEEEEEeC-CCcEEEEECCC--CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcC-cce
Q 009022 367 SGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL-HPI 442 (546)
Q Consensus 367 ~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d-~~i 442 (546)
+++.|+.+.. .+.|.-|++.. +..... +.........+ .|+ ...+-..|.+-+ ++... +.|
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G---------~PD--G~~vDadG~lw~---~a~~~g~~v 237 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPG---------LPD--GMAVDADGNLWV---AAVWGGGRV 237 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCC---------CCC--ceEEeCCCCEEE---ecccCCceE
Confidence 9988877755 47888887753 222111 10010000000 111 222333355553 22222 489
Q ss_pred EEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 443 DFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
.+|+.. |+++..+..+. ....+++.-.|+.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEe
Confidence 999998 88888887775 34444423356666655544
No 379
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.97 E-value=0.26 Score=44.18 Aligned_cols=221 Identities=14% Similarity=0.219 Sum_probs=122.3
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC---Ccc-eEEeec-----CCCcEEEEEECCCCCC------------E
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSR---SGE-AILIHR-----KGSKVVGLHCNPIQPE------------L 326 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~-~~~~~~-----~~~~i~~~~~~p~~~~------------~ 326 (546)
..+.|+++|.+.+.++....+...+||...... ... ...... .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 468899999999999988999999999972111 111 111111 123577787775 222 3
Q ss_pred EEEEeCCCeEEEEECCCCCC---Cceeee-cCCCCcE-EEEEEeC--CCCEEEEEe-CCCcEEEEECCCCCCCCCCccee
Q 009022 327 LLSCGNDHFARIWDIRRLEA---GSSLCD-LPHKRVV-NSAYFSP--SGSKILTTS-QDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~---~~~~~~-~~~~~~v-~~~~~~p--~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
++.++.+|+|.-|...-... ...+.. ......| ..+++.. .+.+|..+. ..++|.|||-.-.+...+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~----- 177 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP----- 177 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-----
Confidence 57778999999998643222 111111 1222333 3466654 355565544 478999998765433111
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeee----------cCCCCcCcceEEEECCchhhhHhhc-CCCCCcccce
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE----------NYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPV 467 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~----------~~~g~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~v 467 (546)
..+... .+-.-|.|-. ...+.+++.+. ...|..-|.|-+||+ .|.+++++. +.....-+.+
T Consensus 178 --g~F~DP--~iPagyAPFn---Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 178 --GSFIDP--ALPAGYAPFN---VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred --CCccCC--CCCCCCCCcc---eEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCcee
Confidence 001000 0011111210 00010111110 014566688999998 577777663 2233444444
Q ss_pred eeecC------CCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 468 NKLHP------RDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 468 ~~~s~------~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+..| .|.+|+.-- ||+|..||..+|+.+..+....
T Consensus 250 -a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 250 -AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred -eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 4433 456666644 9999999999999888886654
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.96 E-value=0.11 Score=52.79 Aligned_cols=189 Identities=13% Similarity=0.025 Sum_probs=103.6
Q ss_pred cEEEEEcCC------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC------CeEEEEECCCCceee
Q 009022 184 HILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTDLETGLALS 251 (546)
Q Consensus 184 ~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~ 251 (546)
.+++.||.. ..+..+|..+..........+...-.++++.. +.++++|+.+ .++..||..+.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceec
Confidence 677888776 36778888876443333222344445566654 6788888888 357788888776433
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
...... .+....+. .-+|...++|+.+| .+-.||..+.+..... .... ..........++.+
T Consensus 364 ~a~M~~-----~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~---~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 364 VAPMNT-----KRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLT---RRSGHGVAVLGGKL 430 (571)
T ss_pred cCCccC-----ccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccC-CCCc---ceeeeEEEEECCEE
Confidence 221111 11111111 22678888888886 5677887765432211 0111 12222222226788
Q ss_pred EEEEeCCC------eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCc-----EEEEECCCCC
Q 009022 327 LLSCGNDH------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-----LRIWDSIFGN 389 (546)
Q Consensus 327 l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~-----i~vwd~~~~~ 389 (546)
.++||.++ ++..||..+..- ..+..+.....-..++. -++.+.+.|+.++. |..||..+.+
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTW-TLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCce-eecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 88888554 567888765432 22222211111112322 27788888887763 6677776654
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.43 Score=46.70 Aligned_cols=152 Identities=10% Similarity=0.110 Sum_probs=87.4
Q ss_pred ccCCCeEEEEEcCC----CCcEEEEEcCCCcEEEEeCCC-----CceeEEecccC--CC--ceEEEEEecCCCCEEEEEe
Q 009022 168 YHSRRVTCLEFHPT----NNHILLSGDKKGQVGVWDFYK-----VSEKIVYGNIH--SC--IVNNIRFNPTNDGTVYAAS 234 (546)
Q Consensus 168 ~h~~~V~~l~~~~~----~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~--~~--~v~~~~~~~~~~~~l~s~~ 234 (546)
|.-..|..+.|.|- -+.+||.-- ...|.||.+.. .+......-.. .- --..+.|+|. ...|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEe
Confidence 45567999999985 334566554 57899999862 11111111011 11 1245779998 77777666
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCc-ceEEeecCCC
Q 009022 235 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSG-EAILIHRKGS 312 (546)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~~~ 312 (546)
....-.+++++.............+ .|.|.+|.+||+.|+++-. .=.-++||-....... .......-++
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G--------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~ 203 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSG--------LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGG 203 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCc--------eEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCC
Confidence 5555456676655444444443332 5999999999999888744 3467888865542211 1122333344
Q ss_pred cEEEEEECCCCCCEEEEEe
Q 009022 313 KVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~ 331 (546)
.|.+|.-.- ...+|.+.
T Consensus 204 ~Icsi~AT~--dsqVAvaT 220 (671)
T PF15390_consen 204 YICSIEATV--DSQVAVAT 220 (671)
T ss_pred ceEEEEEec--cceEEEEe
Confidence 666665442 23444443
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.08 Score=53.76 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=116.3
Q ss_pred CCEEEEEeCC------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC------CcEEEEe
Q 009022 227 DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVD 294 (546)
Q Consensus 227 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d 294 (546)
+.+++.|+.. ..+..||..++........+... .-.+++. -++...++|+.+ ..+..||
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r--------~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR--------CRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc--------ccccEEE-ECCEEEEEccccCCCcccceEEEec
Confidence 5566777766 36788888887554433332111 1222332 245778888877 3778889
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe-----EEEEECCCCCCCceeeecCCCCcEEEEEEeC-CC
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF-----ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SG 368 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~ 368 (546)
.++.+... ........... +++.. ++.+.|+||.||. |-.||..+.+- ..+.. ......+..... +|
T Consensus 356 ~~~~~W~~-~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~--m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTP-VAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAP--MLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceec-cCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcc-cccCC--CCcceeeeEEEEECC
Confidence 88766332 11122111111 22222 7788899998874 77788765332 12211 112223333222 78
Q ss_pred CEEEEEeCCC------cEEEEECCCCCCCC--CCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc
Q 009022 369 SKILTTSQDN------RLRIWDSIFGNLDS--PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 440 (546)
Q Consensus 369 ~~l~s~s~dg------~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~ 440 (546)
.+.++|+.++ ++..||..++.-.. +... +..........+.+.+ .|+.++
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-------------------~R~~~g~a~~~~~iYv---vGG~~~ 486 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-------------------RRSGFGVAVLNGKIYV---VGGFDG 486 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-------------------ccccceEEEECCEEEE---ECCccC
Confidence 8888888654 46778877654311 1110 0000112223344444 344333
Q ss_pred -----ceEEEECCchhhhH--hhcCCCCCcccceeeecCCCcEEEEec-C-----CcEEEEcCCCCC
Q 009022 441 -----PIDFIDITTGQLVA--EVMDPNITTISPVNKLHPRDDVLASGS-S-----RSIFIWRPKEKS 494 (546)
Q Consensus 441 -----~i~iwd~~~~~~~~--~~~~~~~~~i~~v~~~s~~~~~l~sgs-d-----g~i~vwd~~~~~ 494 (546)
+|..||..+.+-.. ....+. ....+ ..-++.+.+.|+ | ++|..||..+.+
T Consensus 487 ~~~~~~VE~ydp~~~~W~~v~~m~~~r--s~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWTMVAPMTSPR--SAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCccceEEEEcCCCCceeEcccCcccc--ccccE--EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 47889987755322 222221 11122 233566667776 6 477788776653
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.014 Score=60.62 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=79.9
Q ss_pred ceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCc----ceE----EeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 268 MLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSG----EAI----LIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~----~~~----~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
++..+...+|+...++.. .+-.|..||++.-.... ..+ ..........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 355666677766655543 33488999997643221 111 11223345678899995566777778899999
Q ss_pred EEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 338 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
+..+... ......+.....+++++|+|.|+.++.|-..|++.-|...
T Consensus 182 V~~~~~~--~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQL--AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhh--hhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 9887532 2233334566778999999999999999999999988654
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0031 Score=37.07 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.1
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..|...|.++.|++. ..++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 468889999999998 78999999999999996
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.80 E-value=0.84 Score=47.55 Aligned_cols=295 Identities=13% Similarity=0.071 Sum_probs=143.3
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC--CCC---EEEEEeCCCeEEEEE-CCCCceeeeeecCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT--NDG---TVYAASSDGTVSCTD-LETGLALSLMNVNPN 258 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~---~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~ 258 (546)
.++.++.++.+....+................|.|+.++|- ..+ +++.|..+..+.+.- +.....+......
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~-- 578 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS-- 578 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC--
Confidence 34555555556555655544333332345678999999875 233 788888766554443 2333222222111
Q ss_pred CCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC--CCCCCcceEEeecCCCcEEEEEECCCC-------------
Q 009022 259 GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR--TNSRSGEAILIHRKGSKVVGLHCNPIQ------------- 323 (546)
Q Consensus 259 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~p~~------------- 323 (546)
....+..|.-..+-.+..+|.++..||.+..|-+. ++...... ..+-...|+.--.|+...
T Consensus 579 ---~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v 654 (1096)
T KOG1897|consen 579 ---GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRTAVFALSDRPTV 654 (1096)
T ss_pred ---CCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCceEEEEeCCCCEE
Confidence 12222245556666778999999999988766543 32211100 000000011111111101
Q ss_pred -----------------------------CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE
Q 009022 324 -----------------------------PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT 374 (546)
Q Consensus 324 -----------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 374 (546)
+..++++. .+.+++.-+...+.. .+++.+-......+++.+....+++.
T Consensus 655 iY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl-~irtvpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 655 IYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL-HIRTVPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred EEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc-ceeeecCCCChhheEecccceEEEEE
Confidence 11222222 333444443321111 11123334456677787755555555
Q ss_pred eCC--------------CcEEEEECCCCCCCCCCcceeeccCCcccCCcee---EEecCCCCCCceeEEeeeee-ecCCC
Q 009022 375 SQD--------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR---AEWDPKDPSESLAVIGRYIS-ENYNG 436 (546)
Q Consensus 375 s~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~-~~~~g 436 (546)
+.- ..++++|-++.+ ..+.+.+...-...+ +.|.-+. ...+.+ |.-+. ..-..
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~-------vl~~hef~~~E~~~Si~s~~~~~d~-~t~~vV-GT~~v~Pde~e 803 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFE-------VLSSHEFERNETALSIISCKFTDDP-NTYYVV-GTGLVYPDENE 803 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCcee-------EEeeccccccceeeeeeeeeecCCC-ceEEEE-EEEeeccCCCC
Confidence 431 135666655543 344555554444333 3355443 222222 32222 11123
Q ss_pred CcCcceEEEECCchhhhHhhcCCC-CCcccceeeecCCCcEEEEecCCcEEEEcCCCCCcccee
Q 009022 437 AALHPIDFIDITTGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 437 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~~~ 499 (546)
-..|.|.||....+..+..+..+. .+.+.++.. -+|++||+- ...|++|++.+++.++.-
T Consensus 804 p~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~I-n~~vrLye~t~~~eLr~e 864 (1096)
T KOG1897|consen 804 PVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAGI-NQSVRLYEWTTERELRIE 864 (1096)
T ss_pred cccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEec-CcEEEEEEccccceehhh
Confidence 455889999887754444443322 244444423 367776653 478999999888655543
No 386
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.59 Score=45.55 Aligned_cols=195 Identities=14% Similarity=0.239 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec------ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
+.|.++.|+.+. . |+.-..||.++++|+.... ...+. ......+....+..+ | .++ -..++.+.+..-
T Consensus 81 ~~iv~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~-G-ivv-Lt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN-G-IVV-LTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCCC-e-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC-C-EEE-ECCCCeEEEEeC
Confidence 789999999875 4 5566689999999987443 11110 111222223333323 4 222 233444444432
Q ss_pred CCCc-eeeeeecCCCCCCCCCcccceEE-EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 245 ETGL-ALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 245 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
-... ....+...+........+..... ..++.+....+.....+.+.+.+-..... . ...+++..|++||
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i-~~~~~i~~iavSp- 226 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------I-DSDGPIIKIAVSP- 226 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------c-cCCCCeEEEEECC-
Confidence 2211 11111100110000000111111 23455555556656666666554332211 1 1224799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 384 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd 384 (546)
+++++|.-..+|.+.+....-.+ .+..+ ........|.|+-+...++.- ...|.+..
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf~~---~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDFSE---KLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCEEEEEECCCCEEEEECcccc---eeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999999999988764222 22222 334566778887654433332 34455543
No 387
>PHA02713 hypothetical protein; Provisional
Probab=96.75 E-value=0.092 Score=53.43 Aligned_cols=190 Identities=7% Similarity=0.030 Sum_probs=94.3
Q ss_pred cEEEEEcCC------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-----eEEEEECCCCceeee
Q 009022 184 HILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLALSL 252 (546)
Q Consensus 184 ~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~ 252 (546)
.+++.||.+ ..+..||+.+..-.....-.....-.+++. -+ +.+.+.|+.++ .+..||..+..-...
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-ID-DTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-EC-CEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 678888754 347778877654221110001111112222 23 67778887654 478899887654332
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----------------------cEEEEeCCCCCCCcceEEeec
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----------------------FLYLVDARTNSRSGEAILIHR 309 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~ 309 (546)
-..+.. .. ....+ .-++...+.|+.++ .+..||..+.+..... ....
T Consensus 383 ~~mp~~-----r~--~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~ 452 (557)
T PHA02713 383 PDMPIA-----LS--SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWT 452 (557)
T ss_pred CCCCcc-----cc--cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCc
Confidence 211111 00 01111 22577777776542 4777887765432111 1111
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC--cEE
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--RLR 381 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg--~i~ 381 (546)
.... .+++.. ++.+.+.|+.+ ..+..||..+......+..++......+++.. ++.+.++|+.++ .+.
T Consensus 453 ~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 453 GTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQD 528 (557)
T ss_pred cccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehh
Confidence 1111 122222 56777777654 24678998752122233333222222222222 788899999888 677
Q ss_pred EEECCCCC
Q 009022 382 IWDSIFGN 389 (546)
Q Consensus 382 vwd~~~~~ 389 (546)
.||+.+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77776654
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.00014 Score=72.56 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=109.1
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC--CCceeeeeecCCCCCCCCCcccce
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
.+-+++-+.........+.++..+.|..+.|-..+...++ -.-|.+.+|++. .|+....+..+...-.+... ..|
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~-~~V 186 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP-QLV 186 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc-cee
Confidence 4567777766544333444678888888988543222222 233678899876 44444333333222111111 123
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCce
Q 009022 270 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 349 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 349 (546)
...-|.++.-++..+..++.+++..+.+... .++.. |+..+..+++.. .+-.++.
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rs--Hs~~~~d~a~~~-~g~~~l~-------------------- 241 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRS--HSQRVTDMAFFA-EGVLKLA-------------------- 241 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--HHHHh--cCCCcccHHHHh-hchhhhe--------------------
Confidence 3333444666777777778887776654322 12122 333444444432 1111110
Q ss_pred eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee
Q 009022 350 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 428 (546)
Q Consensus 350 ~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~ 428 (546)
..+|||..|+..+.||.+++|.+. +|+... ...+.+..+..--.++|..+.......-.|.
T Consensus 242 -------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~-----rclhewkphd~~p~vC~lc~~~~~~~v~i~~ 303 (1283)
T KOG1916|consen 242 -------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVH-----RCLHEWKPHDKHPRVCWLCHKQEILVVSIGK 303 (1283)
T ss_pred -------------eeCCCCcEEEEeecCCccceeeeeeeccccH-----hhhhccCCCCCCCceeeeeccccccCCccce
Confidence 056777777777777777777653 122111 1112222222112344443322222333354
Q ss_pred eeeecCCCCcCcceEEEECCchhhh
Q 009022 429 YISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
+...+.+...+..+++|....++|+
T Consensus 304 w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 304 WVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eEEEEecccCCcceeEeeccchhhh
Confidence 4444445666788999999988887
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.11 Score=45.63 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=108.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcC-----CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDK-----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS--- 235 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--- 235 (546)
+.|.||. .|||+| ++|...-. -|.|-|||....-...--...|.-.-..+.|.++ ++.++.+..
T Consensus 113 RHfyGHG------vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-GrtlvvanGGIe 184 (366)
T COG3490 113 RHFYGHG------VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVANGGIE 184 (366)
T ss_pred ceeeccc------ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEeCCcee
Confidence 4466674 599999 66665433 3789999988644333333567777788999999 887777642
Q ss_pred ---------------CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc----EEEEeC-
Q 009022 236 ---------------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF----LYLVDA- 295 (546)
Q Consensus 236 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~i~d~- 295 (546)
.-++.+.|..+|..+....++... ..-.+..++..++|..++.+-..|. --+.-.
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l-----~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~ 259 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL-----RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF 259 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhh-----hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec
Confidence 123444454555555444333111 1124777888888876665532221 111111
Q ss_pred CCCCCCcceEEee-----cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 296 RTNSRSGEAILIH-----RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 296 ~~~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
..+... +.+... .....|-+|+.+..++...+++-..+...+||..++.. +.... -..+..++ +...-
T Consensus 260 ~~g~~l-~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v---v~~a~-l~daaGva--~~~~g 332 (366)
T COG3490 260 RKGEPL-EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV---VSEAA-LPDAAGVA--AAKGG 332 (366)
T ss_pred cCCCcC-cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE---Eeccc-ccccccce--eccCc
Confidence 111111 111100 11125778888873444445554566788999976543 32111 11122233 33444
Q ss_pred EEEEeCCCcEEEEE
Q 009022 371 ILTTSQDNRLRIWD 384 (546)
Q Consensus 371 l~s~s~dg~i~vwd 384 (546)
|++.+.+|.+.++.
T Consensus 333 f~vssg~G~~~~~s 346 (366)
T COG3490 333 FAVSSGQGRIIFYS 346 (366)
T ss_pred eEEecCCceEEecc
Confidence 67777889898874
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.69 E-value=0.37 Score=44.29 Aligned_cols=160 Identities=11% Similarity=0.050 Sum_probs=79.5
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.-.+.+..+..+++| ++++++..-..+.-|+.-...-.... +.....|..+.|.|+ +.+.+.+ ..|.|++=+...
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~-~~lw~~~-~Gg~~~~s~~~~- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD-GNLWMLA-RGGQIQFSDDPD- 216 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT-S-EEEEE-TTTEEEEEE-TT-
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC-CCEEEEe-CCcEEEEccCCC-
Confidence 344778899999999 78888877666677886543222222 346789999999998 6665544 788888877221
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
....+..+..+. ......+..++|.+++...++|+. |.+. .....++...+......-...++.|.|.+ ...-+
T Consensus 217 -~~~~w~~~~~~~--~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf 290 (302)
T PF14870_consen 217 -DGETWSEPIIPI--KTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVN-PDKGF 290 (302)
T ss_dssp -EEEEE---B-TT--SS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEE-TTEEE
T ss_pred -CccccccccCCc--ccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcC-CCceE
Confidence 111111111110 111124789999998777776654 4333 33334433222111122234688888876 44445
Q ss_pred EEEeCCCeEEEE
Q 009022 328 LSCGNDHFARIW 339 (546)
Q Consensus 328 ~~~~~dg~i~iw 339 (546)
+. +.+|.|.-|
T Consensus 291 ~l-G~~G~ll~~ 301 (302)
T PF14870_consen 291 VL-GQDGVLLRY 301 (302)
T ss_dssp EE--STTEEEEE
T ss_pred EE-CCCcEEEEe
Confidence 54 468877655
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0096 Score=61.47 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC-
Q 009022 277 EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH- 355 (546)
Q Consensus 277 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 355 (546)
.+..++.|+..|.+...|+...-. .........++|++++|+. ++.+++.|-.+|.|.+||+.+.+..+.+...++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 456788999999999998876421 1223334456999999998 999999999999999999987666555544322
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 356 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 356 ~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
...|..+.+..++..++++...|. +|.+.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 122333444445667888777776 66553
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.13 Score=52.28 Aligned_cols=61 Identities=5% Similarity=-0.137 Sum_probs=36.3
Q ss_pred cceEEEECCc---hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CC--cEEEEcCCCCCccceeeccce
Q 009022 440 HPIDFIDITT---GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR--SIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 440 ~~i~iwd~~~---~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg--~i~vwd~~~~~~~~~~~~~~~ 504 (546)
..+..||..+ ++.+..+..+. .... +..-+|++.++|+ +| .+..||+.+.+=......|..
T Consensus 480 ~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 480 TCIFRYNTNTYNGWELITTTESRL--SALH--TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eeEEEecCCCCCCeeEccccCccc--ccce--eEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 3478899886 34444443322 1122 2233788888888 87 788888887764444444443
No 393
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.46 E-value=0.26 Score=45.38 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=91.8
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCC-CceeEE---ecccCCCce-EEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYK-VSEKIV---YGNIHSCIV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~---~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
|.+++-+.+-+.||.+.-..+.. ++.... +......++ ..-++... +..++-.+..|.|+-.++..........
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC-CCeEEEEecCCEEEEEeccCCcccccCc
Confidence 44434577777789988888874 332211 111112222 23344444 5556667888999998887654332211
Q ss_pred cCCCC-CCCCCcc--cceEEEEecCCCCEEEEEeC---C-------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 255 VNPNG-WHGPRTW--RMLYGMDINPEKGVVLVADN---F-------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 255 ~~~~~-~~~~~~~--~~v~~~~~~~~~~~l~~~~~---d-------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
..... ......| ....-+++++..+.|++.-. . ..|+++|+.+++.+.++...+ ++.+|.++.
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~----~~~Si~Vsq 298 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH----PIDSIAVSQ 298 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE----EESEEEEES
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC----ccceEEEcc
Confidence 11000 0000011 12344677776666655321 1 278999999988766543222 577898887
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCCCCCceeeecCCCC
Q 009022 322 IQPELLLSC-GNDHFARIWDIRRLEAGSSLCDLPHKR 357 (546)
Q Consensus 322 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 357 (546)
.+.-+|++. ..++.|.+||..+++....+..++...
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~ 335 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETP 335 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS-
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCc
Confidence 444466544 458999999999877655555555443
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.45 E-value=0.016 Score=35.98 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 355 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 355 ~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
....|.+++|+|...+||.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45669999999999999999999999999983
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.38 E-value=0.79 Score=42.14 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=78.6
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
..-.+.+..+..+++ +.++++++....+.-|+.-...-....... ...|.+|.|.|++.+.+++ ..|.|
T Consensus 141 ~~~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~---------~~riq~~gf~~~~~lw~~~-~Gg~~ 209 (302)
T PF14870_consen 141 SETSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNS---------SRRIQSMGFSPDGNLWMLA-RGGQI 209 (302)
T ss_dssp -S----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--S---------SS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred cCCcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCc---------cceehhceecCCCCEEEEe-CCcEE
Confidence 445577888888888 888888877666667775432222211111 1259999999998876655 77888
Q ss_pred EEEeCCC-CCCCcc-eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCC
Q 009022 291 YLVDART-NSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 367 (546)
Q Consensus 291 ~i~d~~~-~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~ 367 (546)
++=+... ...... ..........+..++|.+ +....++|+ .|.| +.....++.-+..... .....++.|.|.+.
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 8877221 111111 011112233589999998 677777665 5544 3444433433332221 34567889999866
Q ss_pred CCEEEEEeCCCcEEEE
Q 009022 368 GSKILTTSQDNRLRIW 383 (546)
Q Consensus 368 ~~~l~s~s~dg~i~vw 383 (546)
.+-++.| .+|.|.-|
T Consensus 287 ~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEEC-CCcEEEEe
Confidence 5555555 67776554
No 396
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.84 Score=42.22 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=112.0
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
-.|.+....++.+--..+.|.-|+..++...... +...+.++..... +..|+++.. -+.+++..++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 3467777556777777888999998766544433 3344455555444 556666554 366777766665333322
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
.... ......+.+...|+|.+.+.... -|.|+.++.. +... + ....+-..-+.|+|+| ++
T Consensus 104 ~~~~----~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~-~--l~~~~~~~~NGla~Sp-Dg 174 (307)
T COG3386 104 PEDG----LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVV-R--LLDDDLTIPNGLAFSP-DG 174 (307)
T ss_pred ccCC----CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEE-E--eecCcEEecCceEECC-CC
Confidence 2111 11124667778888887666444 1345555432 1111 1 1111122457899999 88
Q ss_pred CEEEEEe-CCCeEEEEECCC--CCCCce--eeec-CCCCcEEEEEEeCCCCEEEEEeCCC-cEEEEECCCCCC
Q 009022 325 ELLLSCG-NDHFARIWDIRR--LEAGSS--LCDL-PHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDSIFGNL 390 (546)
Q Consensus 325 ~~l~~~~-~dg~i~iwd~~~--~~~~~~--~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg-~i~vwd~~~~~~ 390 (546)
+.|+.+. ..+.|.-|++.. ...... .... ...+..-.++...+|.+.+++...| .|.+|+.. |++
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 7666654 457888887752 111111 1111 2345555677777888776554444 89999877 654
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.31 E-value=0.016 Score=35.94 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
....|.+++|+|. .++||.++.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCc
Confidence 4567999999999 999999999999999998 444
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.31 E-value=0.69 Score=41.69 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=88.5
Q ss_pred ceEEEEEecCCCCEEEEEe---CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 216 IVNNIRFNPTNDGTVYAAS---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
.+.+.+++++ +..++... ....|.++.... ........ ..+..-+|++++...++...+....+
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCC--cceeeccC----------CccccccccCCCCEEEEEcCCCceEE
Confidence 6888999999 66665554 334455555433 22222110 13667789999888887777777676
Q ss_pred Ee-CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCC------ceeeec-CCCCcEEE
Q 009022 293 VD-ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAG------SSLCDL-PHKRVVNS 361 (546)
Q Consensus 293 ~d-~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~------~~~~~~-~~~~~v~~ 361 (546)
+. ...+...............|..+.++| ++..++... .++.|.+--+...... ..+... .....++.
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 64 333332221122222222799999999 888777655 3577777655432222 111111 23467899
Q ss_pred EEEeCCCCEEEEEeCCC
Q 009022 362 AYFSPSGSKILTTSQDN 378 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~dg 378 (546)
+.|.+++.+++.+...+
T Consensus 171 v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeecCCCEEEEEeCCCC
Confidence 99999988877766544
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.25 E-value=1.4 Score=46.49 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec----------------CCCCEEEEEeCCCcE
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----------------PEKGVVLVADNFGFL 290 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~l~~~~~dg~i 290 (546)
+..|+.++.++.|.-.|..+|+.+..+........... ...+..+++- ..+..++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~-~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQ-HQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc-cccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 56788888889999999999999888765432111000 0011222221 134578889999999
Q ss_pred EEEeCCCCCCCc
Q 009022 291 YLVDARTNSRSG 302 (546)
Q Consensus 291 ~i~d~~~~~~~~ 302 (546)
.-.|..+++...
T Consensus 273 iALDA~TGk~~W 284 (764)
T TIGR03074 273 IALDADTGKLCE 284 (764)
T ss_pred EEEECCCCCEEE
Confidence 999999987653
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.84 Score=43.45 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=77.7
Q ss_pred cCCCCcEEEEEc------CCCcEEEEeCCCCceeEEeccc--CCCceEEEEEecCCCCEEEEEeC---------------
Q 009022 179 HPTNNHILLSGD------KKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFNPTNDGTVYAASS--------------- 235 (546)
Q Consensus 179 ~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~--------------- 235 (546)
-|+| ++++|+- .-|-+.+.|-++.+........ ...--..+-|.|. .+.++|...
T Consensus 138 lp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTH
T ss_pred cCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHh
Confidence 3677 5676652 2246788887776655554322 2233466778887 778887642
Q ss_pred -----CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEE-eCCCcEEEEeC-CCCCCCc-ceE
Q 009022 236 -----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVA-DNFGFLYLVDA-RTNSRSG-EAI 305 (546)
Q Consensus 236 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~-~~~~~~~-~~~ 305 (546)
..+|.+||+.+.+.++.+.+.... ..+..+.|.. +..+=+++ .....|..|-- ..+.... +.+
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEG-------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTE-------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCC-------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 468999999999999999886542 1355566654 44443333 34455655543 2222111 111
Q ss_pred Eeec-----------------CCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCCCcee
Q 009022 306 LIHR-----------------KGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEAGSSL 350 (546)
Q Consensus 306 ~~~~-----------------~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 350 (546)
.... ...-|+.|.+|. +.++|.... ..|.|+.||+......+..
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 1110 023478999999 667666554 6899999999876554443
No 401
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.83 Score=40.68 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=102.0
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
-..-+..+.++ +.+...+..+.-++|.|+.+.........-.. . =..-.|.-.|++..++..+.-+.+
T Consensus 85 ~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~----gyaygv~vsGn~aYVadlddgfLi 152 (370)
T COG5276 85 ARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----D----GYAYGVYVSGNYAYVADLDDGFLI 152 (370)
T ss_pred hhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccC-----C----ceEEEEEecCCEEEEeeccCcEEE
Confidence 45567788887 45777777778899999987654433321111 0 112234456899999998888889
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 372 (546)
+|+.+.+.+...-.....+.....++.+ +++...+..|+-+.|.|+........+........+.++..+++..+++
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence 9998876554333333333334566664 5777778889999999998766655544444444788888888777766
Q ss_pred EEeCCCcEEEEECC
Q 009022 373 TTSQDNRLRIWDSI 386 (546)
Q Consensus 373 s~s~dg~i~vwd~~ 386 (546)
.... -+.+-|..
T Consensus 230 vy~e--gvlivd~s 241 (370)
T COG5276 230 VYDE--GVLIVDVS 241 (370)
T ss_pred Eccc--ceEEEecC
Confidence 6532 24444544
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.19 E-value=0.56 Score=44.60 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCEEEEEe-CCCeEEEEECCCC----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe------CCCcEEEEeC
Q 009022 227 DGTVYAAS-SDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD------NFGFLYLVDA 295 (546)
Q Consensus 227 ~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~ 295 (546)
.++|+..+ ..+.|+|.|+.+. +....+... .............+..-|+|++++++- .-|.+.++|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~--ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPE--EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HH--HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHH--HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 56666666 5788999998743 233333210 000000111234455567898888852 2357778887
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC--------------------CCeEEEEECCCCCCCceeeecCC
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN--------------------DHFARIWDIRRLEAGSSLCDLPH 355 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~ 355 (546)
.+................-+.+-|.| ..+.+++... ..+|.+||+.+.+..+.+- ++.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id-Lg~ 242 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID-LGE 242 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE-S-T
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe-cCC
Confidence 76544332212122223456788888 7788887642 3579999998766544443 333
Q ss_pred CC-cEEEEEEeC--CCCEEEEEe-CCCcEEEE
Q 009022 356 KR-VVNSAYFSP--SGSKILTTS-QDNRLRIW 383 (546)
Q Consensus 356 ~~-~v~~~~~~p--~~~~l~s~s-~dg~i~vw 383 (546)
.+ ....|.|.. +..+-++++ ..+.|..|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 32 355666654 455544443 34444444
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=1.2 Score=45.19 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=108.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
.+...++..+|..-.-+. +.--.|+|+++.... +..+.-.|. .+-.+.|+.+ ..|++...+|++++|++-.. .
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~l-L~~~~w~~~-~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ 115 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQL-LGRILWKHG-ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-F 115 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEeccccc-hHHHHhcCC-CeeeecccCC--ceEEEEeccceEEEeecchh-h
Confidence 345556666664311122 334568899876543 333323344 7788999874 67788889999999998633 3
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC--CCEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELL 327 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l 327 (546)
+........... ..|..+.+..+| +++-+.+|.+.+..-.......+.........+..|.+..+.. ...+
T Consensus 116 ie~~svg~e~~~-----~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 116 IESNSVGFESQM-----SDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred hccccccccccc-----CceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 322211111000 024444444444 3344444555544322221111111111111122333333201 1112
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
+-....-...++...... .+........+.+..+..||+.++|+--...|.|.+-++...+.. ...+...+.
T Consensus 189 l~v~~~v~~~~~q~~~~~-~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-------ce~~~~~~~ 260 (829)
T KOG2280|consen 189 LDVDVAVGLHICQVEESR-VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-------CEFNCTDHD 260 (829)
T ss_pred Eeechhhhhcccceeccc-ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh-------hccCCCCCC
Confidence 111100001122221111 111111112356888999999999999999999999887655432 223333444
Q ss_pred CceeEEecCCC
Q 009022 408 TPFRAEWDPKD 418 (546)
Q Consensus 408 ~~~~~~~~p~~ 418 (546)
.+-.++|.-++
T Consensus 261 ~p~qm~Wcgnd 271 (829)
T KOG2280|consen 261 PPKQMAWCGND 271 (829)
T ss_pred chHhceeecCC
Confidence 44466776554
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.99 E-value=0.46 Score=48.42 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=82.2
Q ss_pred CceEEEEEecCCCCEEEEEe------CCC--eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC
Q 009022 215 CIVNNIRFNPTNDGTVYAAS------SDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 286 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 286 (546)
..+...+++|+ +..++... .|. .|.+++.. +.. ..+.... ....-.|+|+|..|++...
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~----------~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH----------SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC----------CCCCceECCCCCceEEEec
Confidence 46788999999 76666554 233 45555542 222 2221110 2556779999887776643
Q ss_pred C------------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc-ee---
Q 009022 287 F------------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS-SL--- 350 (546)
Q Consensus 287 d------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~--- 350 (546)
. +.+++.++..+.... .....|..+.|+| ++..++... +|.|++=-+.....+. .+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 2 233333443322111 1234699999999 998887765 5777773222111111 11
Q ss_pred eec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 351 CDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 351 ~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
..+ .....+.++.|.+++.++ ++..++...+|.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 111 233346889999988855 5555555555654
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.86 E-value=1.9 Score=41.65 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=49.0
Q ss_pred eeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC----------------CcEEEE-ec-CCcEEEE
Q 009022 427 GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR----------------DDVLAS-GS-SRSIFIW 488 (546)
Q Consensus 427 g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~----------------~~~l~s-gs-dg~i~vw 488 (546)
+++.+ ....-|.|.++|+.++..++..+|-......-+....+. ..+|+. +- -|.|.||
T Consensus 319 ~~laA---~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW 395 (415)
T PF14655_consen 319 GRLAA---VTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVW 395 (415)
T ss_pred CCEEE---EEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEE
Confidence 55555 345568999999999999988877653333222112221 123443 55 7999999
Q ss_pred cCCCCCccceeecc
Q 009022 489 RPKEKSELVEQKEE 502 (546)
Q Consensus 489 d~~~~~~~~~~~~~ 502 (546)
.++.|..+..+...
T Consensus 396 ~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 396 SMRQGPRVAAFNVG 409 (415)
T ss_pred ecCCCCEEEEEEeC
Confidence 99999999887653
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.76 E-value=0.57 Score=39.95 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC---C---eEEEE-ECCCC---CCCc
Q 009022 279 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND---H---FARIW-DIRRL---EAGS 348 (546)
Q Consensus 279 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d---g---~i~iw-d~~~~---~~~~ 348 (546)
..|+.+.....|.+|++.+.... .......-+.|..+.++. .|++|++--.+ . .+|+| +.+.. ...-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~--~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP--LLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc--eeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 45555566788999999833221 222223335899999999 89999986432 2 56665 22211 0000
Q ss_pred e---------------------eeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCC
Q 009022 349 S---------------------LCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 349 ~---------------------~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
. +-.++-..++.+++-.| .|++++ |+ ++.+.+|.+..+.
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEE
Confidence 0 11113455778888889 666554 43 5689999886544
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.71 E-value=1.5 Score=39.53 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCcEEEEE--cCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE-CCCCc
Q 009022 172 RVTCLEFHPTNNHILLSG--DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD-LETGL 248 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~ 248 (546)
.+.+.++++++..+.+.. .....|+++... ....... ....+..-.|.++ +...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 688999999995544544 233455555543 3333322 2236788899998 77776666666666664 33333
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCC-----cceEE-eecCCCcEEEEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRS-----GEAIL-IHRKGSKVVGLHC 319 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-----~~~~~-~~~~~~~i~~~~~ 319 (546)
... .........+ .|..+.++|||..++... ..+.|++--+.....- ..... .......+..+.|
T Consensus 100 ~~~-~~v~~~~~~~-----~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 100 GEP-VEVDWPGLRG-----RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred cee-EEecccccCC-----ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 221 1111111010 599999999999888865 3477777655422111 11111 1122347899999
Q ss_pred CCCCCCEEEEEeCCC
Q 009022 320 NPIQPELLLSCGNDH 334 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg 334 (546)
.+ +..+++.+...+
T Consensus 174 ~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SD-DSTLVVLGRSAG 187 (253)
T ss_pred cC-CCEEEEEeCCCC
Confidence 98 666666555433
No 408
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.69 E-value=1.9 Score=40.64 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=84.8
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe--------------------
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-------------------- 234 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------- 234 (546)
...++|+. +.|+-......|+-.|+.+.+....+ ......+-...|..+....++.+.
T Consensus 85 g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 45567777 44443434467888899887765555 456666666777533233333332
Q ss_pred ---CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCCCCcce
Q 009022 235 ---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------FGFLYLVDARTNSRSGEA 304 (546)
Q Consensus 235 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~ 304 (546)
..+.|...|+.+|+....+.... -+..+.|+|....+++=+. +..|++.+...... ..
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~~----------wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~ 230 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDTD----------WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KK 230 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEESS-----------EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EE
T ss_pred hhCCCceEEEEECCCCceeEEEecCc----------cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--ee
Confidence 12456666778777655554322 2677889986544444322 22444444433221 11
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEe-----CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCG-----NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
+..+.....+..=-|.| +|..|.--+ .+..|.-+|+.+.+.. .+.. ......+-.+++|++++-=+.|
T Consensus 231 v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~---~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 231 VHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLME---MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp SS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EE-EEEE---E-SEEEEEE-TTSSEEEEEE--
T ss_pred eecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCce-EEEe---CCceeeeEEcCCCCEEEecCCC
Confidence 11222233455556888 776554322 2446777788765432 1211 1234456667899887654443
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.67 E-value=1.2 Score=38.21 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=36.4
Q ss_pred eecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEeeccccc
Q 009022 469 KLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKK 514 (546)
Q Consensus 469 ~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~ 514 (546)
++..+|.+.++.- .++|...|+.+|+.+.+++.+.+.+.|....++
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3556787766655 799999999999999999999888777555544
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.64 E-value=1 Score=46.17 Aligned_cols=117 Identities=12% Similarity=0.170 Sum_probs=75.3
Q ss_pred ceEEEEecC--CCCEEEEEeCCCcEEEEeCCC-------C----C-----CCcceEEeecCCCcEEEEEEC--CCCCCEE
Q 009022 268 MLYGMDINP--EKGVVLVADNFGFLYLVDART-------N----S-----RSGEAILIHRKGSKVVGLHCN--PIQPELL 327 (546)
Q Consensus 268 ~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~----~-----~~~~~~~~~~~~~~i~~~~~~--p~~~~~l 327 (546)
.|+.|.... +...|+++..||.|.+|.+.. . . ...+.......+..+.+++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 355554443 456889999999999996521 0 0 000011112233478889987 6 67889
Q ss_pred EEEeCCCeEEEEECCCCCCC-ceeeecCCCCcEEEEEEeCCC---C---EEEEEeCCCcEEEEEC
Q 009022 328 LSCGNDHFARIWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSG---S---KILTTSQDNRLRIWDS 385 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~p~~---~---~l~s~s~dg~i~vwd~ 385 (546)
|+++....|.||-....... .......+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888765432111 111122466779999998732 2 7888899999999888
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.62 E-value=1.5 Score=38.96 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=86.7
Q ss_pred CceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
.-...+.|..+ +.++-+.+.-| .|+.+|+.+++......++...+ --.++.. +++.....=.++...+
T Consensus 45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--------gEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--------GEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--------ceeEEEE-CCEEEEEEecCCeEEE
Confidence 34566888666 77778887766 69999999999888877765432 2333333 2344444557789999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC---CCCcEEEEEEeCCCC
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---HKRVVNSAYFSPSGS 369 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~ 369 (546)
||..+.+...+. ... ..=..++. ++..|+.......|+++|..+.+....+.... .-..++-+.|. +|.
T Consensus 115 yd~~tl~~~~~~-~y~---~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 115 YDPNTLKKIGTF-PYP---GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EETTTTEEEEEE-E-S---SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EccccceEEEEE-ecC---CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999886554432 222 23455553 56667777667889999987665544443321 12345556664 444
Q ss_pred EEEEEeCCCcEEEEECCC
Q 009022 370 KILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~ 387 (546)
+.|-.=....|...|..+
T Consensus 187 IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPET 204 (264)
T ss_dssp EEEEETTSSEEEEEETTT
T ss_pred EEEEeCCCCeEEEEeCCC
Confidence 433332333444444443
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.54 E-value=1.4 Score=45.92 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC----------Cce--eE-E-------ecccCCCceEEEEEecCC--CCE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----------VSE--KI-V-------YGNIHSCIVNNIRFNPTN--DGT 229 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~--~~-~-------~~~~~~~~v~~~~~~~~~--~~~ 229 (546)
.|..|.++|+| ++||..|..| |.|-.+.. +.. .. . +...+...|..+.|+|.. +..
T Consensus 86 ~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 68899999999 6777777655 44444421 111 10 1 112345689999999983 578
Q ss_pred EEEEeCCCeEEEEECCCC
Q 009022 230 VYAASSDGTVSCTDLETG 247 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~ 247 (546)
|+.-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999754
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.93 Score=38.19 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=94.9
Q ss_pred cEEEEEcCC--CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 184 HILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 184 ~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
.++.+.+.- ..|++|++.+++........ ...+..=-...-+..+.+..-.+|.-..+|.++-+.+..+.....++
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW- 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW- 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce-
Confidence 677766543 47999999988776654322 11221111111112333444567899999999988888777665542
Q ss_pred CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCc---EEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK---VVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
. +..++..|+.++....++.-|..+.....++..... +.+ ++.+.|- ++.+.|-.-.+..|..
T Consensus 135 ---------g--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~-g~pv~~LNELE~V--dG~lyANVw~t~~I~r 200 (262)
T COG3823 135 ---------G--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDD-GVPVSKLNELEWV--DGELYANVWQTTRIAR 200 (262)
T ss_pred ---------e--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEEC-Ceecccccceeee--ccEEEEeeeeecceEE
Confidence 2 344667788888888888888877655444332221 112 2334444 3433333333333333
Q ss_pred EECCCCCCCc---------eeee-cCCCCcEEEEEEeCCC-CEEEEE
Q 009022 339 WDIRRLEAGS---------SLCD-LPHKRVVNSAYFSPSG-SKILTT 374 (546)
Q Consensus 339 wd~~~~~~~~---------~~~~-~~~~~~v~~~~~~p~~-~~l~s~ 374 (546)
.+..+++... .+.. ..+..-.+.+++.|++ +++++|
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3333222111 1100 1245567889999966 556665
No 414
>PRK10115 protease 2; Provisional
Probab=95.41 E-value=4.3 Score=42.74 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCC----cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC------CeEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSC 241 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~i 241 (546)
.+..+.|+|+|..++++.+.+| .|++-|+.++..+..... . .-..++|.++ ++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~--~~~~~~w~~D-~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-N--VEPSFVWAND-SWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-C--cceEEEEeeC-CCEEEEEEecCCCCCCCEEEE
Confidence 5677899999953333433333 688999987754333211 1 1156999999 6555554332 36888
Q ss_pred EECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 242 TDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 242 wd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+++.++. ....+...... ....+..+.++++++..+ .++.+.+++..........+...... ....
T Consensus 204 h~lgt~~~~d~lv~~e~~~~--------~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 274 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDT--------FYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYS 274 (686)
T ss_pred EECCCChhHCeEEEeeCCCC--------EEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEE
Confidence 8888873 33333321111 112333455787766653 33578888854321111122222222 2223
Q ss_pred EEECCCCCCEEEEEeC---CCeEEEEECCCCCCCceeeecCC--CCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 317 LHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPH--KRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+. +. ...+++.... ...|...++........+ ..+ ...|..+.+. ...++++...+|.-+++-+
T Consensus 275 ~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l--~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 275 LD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEEL--IPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEE--ECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 32 22 2233332222 223444444321111222 233 3468888887 3455566666776555544
No 415
>PHA03098 kelch-like protein; Provisional
Probab=95.40 E-value=0.91 Score=46.39 Aligned_cols=188 Identities=12% Similarity=-0.001 Sum_probs=87.6
Q ss_pred cEEEEEcCCC------cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCceeee
Q 009022 184 HILLSGDKKG------QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALSL 252 (546)
Q Consensus 184 ~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 252 (546)
.+++.||.++ .+..||..+..............-.+++. -+ +.+++.|+.+ ..+..||..+.+-...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FN-NRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-EC-CEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 5777777543 56778877654322111000111112222 23 6777778765 3477788876654322
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
...+. ... -.++ ..-++...+.|+.. ..+..||+.+....... ......... +++.. ++.+
T Consensus 374 ~~lp~-----~r~---~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~-~~~~~--~~~i 440 (534)
T PHA03098 374 PPLIF-----PRY---NPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPISHYGG-CAIYH--DGKI 440 (534)
T ss_pred CCcCc-----CCc---cceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCccccCc-eEEEE--CCEE
Confidence 11111 110 1111 12356666666632 45788998765432111 111110011 22222 4566
Q ss_pred EEEEeCC--------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q 009022 327 LLSCGND--------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 388 (546)
Q Consensus 327 l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~ 388 (546)
++.|+.. ..+.+||..+.+- ..+..+.....-.+++. -++.+++.|+.+ +.|.+||..+.
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 6777643 2388889865331 12211211111112222 267777777654 45777777654
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.35 E-value=0.086 Score=31.65 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.7
Q ss_pred CceEEEEEecCCC--CEEEEEeCCCeEEEEECCCC
Q 009022 215 CIVNNIRFNPTND--GTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 215 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 247 (546)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998745 68888888899999999863
No 417
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.28 E-value=1.2 Score=38.01 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=79.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC---C---cEEEE-eCCCC--
Q 009022 228 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---G---FLYLV-DARTN-- 298 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~~-- 298 (546)
+.|+.+...+.|.+|++..........+..- ..|..+.++..|++|++--.+ . .+++| +.+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 5666656678899999984443333333222 258899999999999996322 2 55554 22211
Q ss_pred --CCCc--------------------ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC-Cceee--ec
Q 009022 299 --SRSG--------------------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-GSSLC--DL 353 (546)
Q Consensus 299 --~~~~--------------------~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~ 353 (546)
.+.. ..+... -..++.+++..|..|++++.. ++.+.||.+..... ...+. .+
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEec
Confidence 1110 001111 123678899999777766543 56788988753222 11111 11
Q ss_pred -------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 354 -------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 354 -------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
...-.+..+++ .+.|+|..+ +-.++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 11222455566 467777775 446777654
No 418
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.25 E-value=4 Score=43.24 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=51.7
Q ss_pred cCCCeEEEEEcCCC-----CcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCC--C------CEEEEEe
Q 009022 169 HSRRVTCLEFHPTN-----NHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTN--D------GTVYAAS 234 (546)
Q Consensus 169 h~~~V~~l~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~------~~l~s~~ 234 (546)
-+..|.|+++.++. .++++.|+.|+.+++..+.....+..+. ++-..++.++.+-+.. + -+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 45678899998864 3589999999999999998655554432 3445555665554321 2 2466677
Q ss_pred CCCeEEEE--ECCCCc
Q 009022 235 SDGTVSCT--DLETGL 248 (546)
Q Consensus 235 ~dg~i~iw--d~~~~~ 248 (546)
.+|.+.-+ |..+|+
T Consensus 661 ~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 661 RNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred cccEEEEEEecccccc
Confidence 77766544 334453
No 419
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.20 E-value=2.2 Score=41.21 Aligned_cols=144 Identities=14% Similarity=0.204 Sum_probs=81.2
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC------CCEEEEEeCCCeEEEEECCCCc-eeeeeecCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLETGL-ALSLMNVNP 257 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~ 257 (546)
++..|+.-..++--|+..++.+-.. ..|... -+.|.|.. ...-+.|-.+..|.-.|.+... .+......
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW-~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK- 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEW-DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK- 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEe-ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-
Confidence 4455666667777788888777666 334433 56677751 1223344445556555655322 22221111
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
...+. ....+ .......++|+++..|.|++||--..+... .+..-+..|..|.... +|.++++.+ ...|.
T Consensus 558 -dY~tK---n~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta-~Gk~ilaTC-k~yll 627 (776)
T COG5167 558 -DYKTK---NKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTA-NGKHILATC-KNYLL 627 (776)
T ss_pred -hcccc---ccccc-cccccCceEEEecCCCceeeehhhcchhhh---cCcccccceeeeEeec-CCcEEEEee-cceEE
Confidence 00000 01111 123356799999999999999964432221 2233344788898888 888777665 56777
Q ss_pred EEECC
Q 009022 338 IWDIR 342 (546)
Q Consensus 338 iwd~~ 342 (546)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 87775
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.17 E-value=2.5 Score=41.71 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC---CCEEEEEeCCCeEEEEECCC
Q 009022 172 RVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN---DGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~ 246 (546)
+|..++|. ||.+.++|.- ..|.+++=|. .. .+.-.-|..+.|.|-. ...|++......|.+|.+.-
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~v-iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KV-IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc-------cE-eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 78889997 5656666642 2233322211 11 2344568899998852 22455556668899998862
Q ss_pred -----CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 247 -----GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 247 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
.+.+......- ......-...+.|+|....|++-+....-.+++++......+ .--...+.|.|.+|.+
T Consensus 92 s~~e~~K~l~sQtcEi----~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk--aDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEI----REPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK--ADIKTSGLIHCACWTK 165 (671)
T ss_pred Cccccccceeeeeeec----cCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE--EeccCCceEEEEEecC
Confidence 22221111110 001111234677999999998887766656667665443222 2223445899999999
Q ss_pred CCCCEEEEEe-CCCeEEEEECC
Q 009022 322 IQPELLLSCG-NDHFARIWDIR 342 (546)
Q Consensus 322 ~~~~~l~~~~-~dg~i~iwd~~ 342 (546)
+|+.|+++- ..=.-+|||-.
T Consensus 166 -DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 -DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred -cCCEEEEEeCCeEEEEEecCc
Confidence 877666553 33356788864
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=94.82 E-value=1.8 Score=43.43 Aligned_cols=185 Identities=7% Similarity=-0.092 Sum_probs=85.7
Q ss_pred cEEEEEcCCC-----cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC--CeEEEEECCCCceeeeeecC
Q 009022 184 HILLSGDKKG-----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 184 ~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~ 256 (546)
.+++.||.++ .+..||..+..............-.+++ .-+ +.+.+.|+.+ ..+..|+..+++-......+
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC-CEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 6778887643 4667777665422211101111111222 223 6677777754 35778887655433221111
Q ss_pred CCCCCCCCcccceEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC
Q 009022 257 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 333 (546)
. .. .......-+++..+.|+.++ .+..||..+....... ...........+.+ ++.+.+.|+
T Consensus 351 ~-----~r----~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~~~---~~~IYv~GG-- 415 (480)
T PHA02790 351 K-----PR----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKSCALVF---GRRLFLVGR-- 415 (480)
T ss_pred C-----CC----cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccceEEEE---CCEEEEECC--
Confidence 1 00 11111223577777776543 4677887764322110 01101001112222 456666663
Q ss_pred CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q 009022 334 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 388 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~ 388 (546)
.+.+||..+.. ...+..+.+...-.+++. -++++.++|+.+ ..+..||..++
T Consensus 416 -~~e~ydp~~~~-W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNT-WTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCc-EeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 57788886432 222222222111112222 277788888754 34666666543
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.81 E-value=1.9 Score=44.36 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=90.7
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeE------Eec---------------ccCCCceEEEEEecC-CCCEEEEEeCCCeEEE
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKI------VYG---------------NIHSCIVNNIRFNPT-NDGTVYAASSDGTVSC 241 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~i 241 (546)
.+|+.+. .+.|.||++....... .+. ......|+.|....- +...|+.|..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4566655 5789999986533211 000 001223555544332 2567888999999999
Q ss_pred EECCCCc-----e---e-e-eeecCCCCCCCCCcccceEEEEec--CCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec
Q 009022 242 TDLETGL-----A---L-S-LMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR 309 (546)
Q Consensus 242 wd~~~~~-----~---~-~-~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 309 (546)
|.+.+-. . . . .......+.........++++++. ...++||++++...|.||-.............+.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 9763110 0 0 0 000000111111222358899998 8889999999999888886654211111111222
Q ss_pred CCCcEEEEEECCCC--CC---EEEEEeCCCeEEEEEC
Q 009022 310 KGSKVVGLHCNPIQ--PE---LLLSCGNDHFARIWDI 341 (546)
Q Consensus 310 ~~~~i~~~~~~p~~--~~---~l~~~~~dg~i~iwd~ 341 (546)
+...|.+|+|.+.+ +. .|++++-.|.+.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 33478899998733 22 7788889999999887
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.15 Score=53.50 Aligned_cols=146 Identities=12% Similarity=0.015 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCcEEE--EEcCCCcEEEEeCCCCceeE----E------ecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 172 RVTCLEFHPTNNHILL--SGDKKGQVGVWDFYKVSEKI----V------YGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~----~------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
+|..+...+++ .+.+ ..+.+-.|..||+.+..... . ..........++.|+|.-....+.+..|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45556666665 3332 23334478889986532111 1 1111233467788998866677888889999
Q ss_pred EEEECCCCcee-eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 240 SCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 240 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
++..+...... ..+.. ....++++|+|.|+.+++|...|.+.-|-..-.-..............|.+|+
T Consensus 181 ~V~~~~~~~~~v~s~p~----------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV----------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhhhhhcccCc----------ccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 88876532211 11111 12489999999999999999999998886543211100001111135799999
Q ss_pred ECCCCCCEEEE
Q 009022 319 CNPIQPELLLS 329 (546)
Q Consensus 319 ~~p~~~~~l~~ 329 (546)
|.. ...++++
T Consensus 251 Wl~-t~eflvv 260 (1405)
T KOG3630|consen 251 WLS-TQEFLVV 260 (1405)
T ss_pred Eec-ceeEEEE
Confidence 986 4444443
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.76 E-value=1.3 Score=38.17 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCcEEEEEcC----------CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDK----------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
..+.-..+|+| ++ ..|.. .|.++.|-....- ..+ ...-..-+.++|+.+...+.++-+.+-.|.-
T Consensus 110 R~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~h~v--~~i-~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAGHQV--ELI-WNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCC-ce-eeeeeccccccccccccEEEEeccCCCc--eee-ehhccCCccccccccCcEEEEEccCceEEee
Confidence 44455678888 55 33322 2455555543321 111 1122334678898774555666677788877
Q ss_pred EE--CCCCceee---eeecCCC-CCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 242 TD--LETGLALS---LMNVNPN-GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 242 wd--~~~~~~~~---~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
|| ..+|.... .+.+... ++... ..-.+++..+|++.++.-..+.|..+|..+++.+.++.. . ...|+
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~----~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-P--t~qit 257 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESL----EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-P--TPQIT 257 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCC----CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-C--CCceE
Confidence 87 66664332 1222211 11111 123455677899999999999999999999987765433 2 33799
Q ss_pred EEEECCCCCCEEEEE
Q 009022 316 GLHCNPIQPELLLSC 330 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~ 330 (546)
+++|--.+-..|++.
T Consensus 258 sccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCCCccEEEEE
Confidence 999975333444443
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.59 E-value=0.69 Score=48.17 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=51.7
Q ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-C-CC-------Ccee-e---------ecCCCCcEEEEEEeCC---CC
Q 009022 312 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-L-EA-------GSSL-C---------DLPHKRVVNSAYFSPS---GS 369 (546)
Q Consensus 312 ~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~-~~-------~~~~-~---------~~~~~~~v~~~~~~p~---~~ 369 (546)
..|..|.++| ++.+|+..|..|.+ |..+.. . .. .... . ...+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 99999988876644 433321 0 00 0001 1 0134567899999994 68
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 009022 370 KILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~ 388 (546)
.|++-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999643
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.30 E-value=0.24 Score=29.79 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=26.6
Q ss_pred cEEEEEECCCCC--CEEEEEeCCCeEEEEECCC
Q 009022 313 KVVGLHCNPIQP--ELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 313 ~i~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~ 343 (546)
.+.++.|+|..+ .+|+.+-..|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 689999998555 6888888899999999984
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.28 E-value=8.6 Score=40.76 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=110.3
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC-------ceEEEEEecC---------------CCCEEEEEeCCCeEEEE
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-------IVNNIRFNPT---------------NDGTVYAASSDGTVSCT 242 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~---------------~~~~l~s~~~dg~i~iw 242 (546)
.|+.++.++.|.-.|..+++.+..+...... ..+.+.+... ....++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5667777888999999988887776421110 1122333211 14478888899999999
Q ss_pred ECCCCceeeeeecCCCC-CC---CCCcccceEEEEecC--CCCEEEEEeC----------CCcEEEEeCCCCCCCcceEE
Q 009022 243 DLETGLALSLMNVNPNG-WH---GPRTWRMLYGMDINP--EKGVVLVADN----------FGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~-~~---~~~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~ 306 (546)
|..+|+....+...... +. +.... .-..+.-.| .+..+++|+. .|.|+-+|.++++.......
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~-g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPP-GYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCC-cccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 99999988765321100 00 00000 000011111 1345666532 68899999999876554322
Q ss_pred eec--------------CCCcE-EEEEECCCCCCEEEEEe------------------CCCeEEEEECCCCCCCceeeec
Q 009022 307 IHR--------------KGSKV-VGLHCNPIQPELLLSCG------------------NDHFARIWDIRRLEAGSSLCDL 353 (546)
Q Consensus 307 ~~~--------------~~~~i-~~~~~~p~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~ 353 (546)
... ....+ ..+++.| ...+++.+. ..+.|.-.|+.+++..=.++..
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 100 00011 2345555 333333322 1234555566655442222221
Q ss_pred CCC-------CcEEEEEEeC-CCC---EEEEEeCCCcEEEEECCCCCCCCC
Q 009022 354 PHK-------RVVNSAYFSP-SGS---KILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 354 ~~~-------~~v~~~~~~p-~~~---~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
.|. ....-+.+.. +|+ .++.++.+|.+.++|-++|+.+.+
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 221 1111122322 553 788999999999999999987654
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=94.15 E-value=5.3 Score=37.82 Aligned_cols=158 Identities=10% Similarity=0.015 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEE-EeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGV-WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
...+.++.+.|++ .+++++. .|.+.. ++- .++.-......-...++++.+.++ +..++++ ..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~-g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPD-GNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC-eEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCC-CCEEEEe-cCCEEEEccCCCCC
Confidence 4578899999988 5666655 454443 221 122122222345567899999998 7666655 45766532344443
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
.-.....+.. .....+..+.+.+++..++++ .+|.+.. ....++...............+.+.+.. +...++
T Consensus 247 sW~~~~~~~~-----~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~~ 318 (334)
T PRK13684 247 SWSKPIIPEI-----TNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGFV 318 (334)
T ss_pred ccccccCCcc-----ccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeC-CCceEE
Confidence 3222211100 011247788899887755554 5565553 3333332221111011122577777775 455555
Q ss_pred EEeCCCeEEEEEC
Q 009022 329 SCGNDHFARIWDI 341 (546)
Q Consensus 329 ~~~~dg~i~iwd~ 341 (546)
.+..|.|..|+-
T Consensus 319 -~G~~G~il~~~~ 330 (334)
T PRK13684 319 -LGQRGVLLRYVG 330 (334)
T ss_pred -ECCCceEEEecC
Confidence 456888887764
No 429
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.88 E-value=4.9 Score=36.43 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=112.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCC------CCce-eEEecc--c--CCCceEEEEEecCC-----------CCE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFY------KVSE-KIVYGN--I--HSCIVNNIRFNPTN-----------DGT 229 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~------~~~~-~~~~~~--~--~~~~v~~~~~~~~~-----------~~~ 229 (546)
.-+.|+|+|.+ .+-++....+...+||.. .... ...+.. + .....+.+.|+... ...
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 34679999998 456666667899999986 1222 222210 0 23457778887541 234
Q ss_pred EEEEeCCCeEEEEECCCCce---eeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEE-eCCCcEEEEeCCCCCCCcc
Q 009022 230 VYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVA-DNFGFLYLVDARTNSRSGE 303 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 303 (546)
++.++.||+|.-|...-+.. ...+...... .+ ..-..+++.. .+.+|..+ -..+.|.+||-.-......
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~g----avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~ 177 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QG----NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP 177 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCC-Cc----ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC
Confidence 67888999999998643332 1112111110 00 1123455543 35555555 4678999998653321100
Q ss_pred --e----EEee---------cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC---CCcEEEEEEe
Q 009022 304 --A----ILIH---------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFS 365 (546)
Q Consensus 304 --~----~~~~---------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~ 365 (546)
. +... ...-.|+-..-.+ +...=+.|-.-|.|-+||+. +..++.+.+ -..-..|+..
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~----G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN----GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC----CcEEEEeccCCcccCCceeeeC
Confidence 0 0000 0000111111122 22222334445789999985 445554433 3344567765
Q ss_pred C------CCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 366 P------SGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 366 p------~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
| .+.+|+---.||+|..||..+++.+
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 5 5667776667999999999888754
No 430
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=2.8 Score=45.43 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=87.7
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEE--------ecCCCCEEEEEeCCCc
Q 009022 218 NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD--------INPEKGVVLVADNFGF 289 (546)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~ 289 (546)
..+-+.|.-++.-++ .|+.+.+|+.+++.....+..-.. .|..+. |-|.=+++++-..--.
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh---------tIl~V~LvkPkpgvFv~~IqhlLvvaT~~e 150 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH---------TILKVGLVKPKPGVFVPEIQHLLVVATPVE 150 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh---------hheeeeeecCCCCcchhhhheeEEecccce
Confidence 344444542333333 467899999998665554433221 122222 3333344555444456
Q ss_pred EEEEeCCCCCCCc------ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE--ECCCC---C-C-----------
Q 009022 290 LYLVDARTNSRSG------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW--DIRRL---E-A----------- 346 (546)
Q Consensus 290 i~i~d~~~~~~~~------~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw--d~~~~---~-~----------- 346 (546)
|.++-+.-..... ..+.....+..|+++.... +|+.|++|- ||.|+=. ....+ + +
T Consensus 151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred EEEEEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHH
Confidence 6665443222111 1123334456799999666 888777764 5544321 11100 0 0
Q ss_pred ---Cceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 347 ---GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 347 ---~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+..+... .+..+|..+.+....+++.+-+..|+|.+|++..
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1111112 4567999999998888999999999999999975
No 431
>PHA03098 kelch-like protein; Provisional
Probab=93.65 E-value=3.3 Score=42.37 Aligned_cols=149 Identities=8% Similarity=0.003 Sum_probs=71.2
Q ss_pred CCEEEEEeCCC------eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeC
Q 009022 227 DGTVYAASSDG------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDA 295 (546)
Q Consensus 227 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 295 (546)
+.+++.|+.++ .+..||+.+.+.......+. ... ....+ .-++..++.|+.+ ..+..||.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~R~--~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-----PRK--NPGVT--VFNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc-----ccc--cceEE--EECCEEEEEeCCCCCEecceEEEEcC
Confidence 56667776542 57788887766533221110 111 11112 2256777777755 35778888
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
.+.+..... ........ .+++.. ++.+++.||.. ..+..||+.+..- ..+..++....-.+++. .++.
T Consensus 366 ~~~~W~~~~-~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~-~~~~ 439 (534)
T PHA03098 366 GESKWREEP-PLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIY-HDGK 439 (534)
T ss_pred CCCceeeCC-CcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEE-ECCE
Confidence 765432111 11111111 122222 56777777632 4588899865321 11111111111112222 2566
Q ss_pred EEEEEeCCC--------cEEEEECCCCCC
Q 009022 370 KILTTSQDN--------RLRIWDSIFGNL 390 (546)
Q Consensus 370 ~l~s~s~dg--------~i~vwd~~~~~~ 390 (546)
+++.|+..+ .+.+||..+++-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCce
Confidence 667776432 378888876553
No 432
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=4.3 Score=34.38 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=59.2
Q ss_pred CCEEEEEeC--CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcc
Q 009022 227 DGTVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGE 303 (546)
Q Consensus 227 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~ 303 (546)
+.++.+.+. ...|++||+.+++.+......+..+.+.. + ..-+.++. ..-.+|.-..+|..+.+....
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEG----i-----t~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEG----I-----TKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccc----e-----eeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 566666654 34699999999998877766532221111 1 11122222 233567888888887655443
Q ss_pred eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee
Q 009022 304 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL 350 (546)
Q Consensus 304 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 350 (546)
. .-.+.=..++. ++..|+.+....+++.-|..+......+
T Consensus 127 ~----~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 127 F----SYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred c----ccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceE
Confidence 2 11223344544 3444666555667777776654443333
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.29 E-value=4.3 Score=39.09 Aligned_cols=149 Identities=9% Similarity=0.071 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcEEEEEc-----------CCC-cEEEEeCCCC--c--eeEEecccCCCceEEEEEecCCCCEEEEEe
Q 009022 171 RRVTCLEFHPTNNHILLSGD-----------KKG-QVGVWDFYKV--S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 234 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 234 (546)
....+|+|.++| +++++-. ..+ .|.+++-..+ . ....+ .........++|.++ + +++ +.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~-G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG-G-VYV-AT 88 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC-C-EEE-eC
Confidence 356789999999 5655532 223 6777754322 2 12233 222335688999887 6 444 44
Q ss_pred CCCeEEEEECCCC-----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-------------------CcE
Q 009022 235 SDGTVSCTDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-------------------GFL 290 (546)
Q Consensus 235 ~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i 290 (546)
....+++.+.... +....+..-... ..........+.|.|+|.+.++-+.. |.|
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~--~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQ--INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCC--CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 4443334454321 111122111110 00011247789999999876654421 334
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.-++...... +. ..........++|+| .+.++++-.
T Consensus 167 ~r~~pdg~~~--e~--~a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKL--RV--VAHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred EEEecCCCeE--EE--EecCcCCCccceECC-CCCEEEEcc
Confidence 4444443221 11 111112456788888 777766543
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.23 E-value=3.2 Score=42.29 Aligned_cols=115 Identities=8% Similarity=0.064 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEe--cCCCCEEEEEeCCCeEEEEECCC---
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAASSDGTVSCTDLET--- 246 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~--- 246 (546)
...-+.-+.-+ +..++-+....+.|||...+.......-.....|.++.|. |+ +..+++.+..+.|.+|.-..
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC-CCEEEEEEcCcEEEEEEccchhh
Confidence 34444445555 4455555556899999988775444332457889999996 55 78888888889999985421
Q ss_pred ------CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009022 247 ------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 296 (546)
Q Consensus 247 ------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 296 (546)
-..+..+.... +. ..+|....|.++|..++.++ ..+.+++-.
T Consensus 109 ~~~~p~w~~i~~i~i~~--~T----~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISS--HT----PHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeec--CC----CCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 12233332221 11 12578888999988776665 467777643
No 435
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.14 E-value=1.5 Score=42.25 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCc-eEEEEEecCCC-------------
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-VNNIRFNPTND------------- 227 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~------------- 227 (546)
....|......+.+|+.+|.+ ++.|+...=|.|.|+|+.++..+... ++.... +.-+.......
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCCCC
Confidence 445666777789999999998 78888888899999999887655544 333321 11111111001
Q ss_pred ----CEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 228 ----GTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 228 ----~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
-+++-+..-|.|.||.+++|..+..+..
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1334466789999999999988776654
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.94 E-value=8.4 Score=36.35 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=88.1
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCc------EEEEeCCCC----ceeE-----EecccCCC-------ceEEEEEecCC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQ------VGVWDFYKV----SEKI-----VYGNIHSC-------IVNNIRFNPTN 226 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~------i~iwd~~~~----~~~~-----~~~~~~~~-------~v~~~~~~~~~ 226 (546)
.-+.+..|.+.+++.++ ++.+.+|. +..+.+... .... .+...... -.-+|++.++
T Consensus 18 ~~GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~- 95 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD- 95 (326)
T ss_pred ccCcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-
Confidence 44678899999655454 44455566 555554431 0010 11011111 2347888565
Q ss_pred CCEEEEEeCC------CeEEEEECCCCceeeeeecCCCC------CCCCCcccceEEEEecCCCCEEEEEeC-----CC-
Q 009022 227 DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNG------WHGPRTWRMLYGMDINPEKGVVLVADN-----FG- 288 (546)
Q Consensus 227 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg- 288 (546)
+.++++.-.+ ..|..++.. |..+..+..+..- .........+-+|+++|+|+.|+++.. ++
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 7777777777 789889877 7776666443321 023344556899999999997666532 22
Q ss_pred -c-------EEE--EeCCCCC-CCcce-EEeec-----CCCcEEEEEECCCCCCEEEE
Q 009022 289 -F-------LYL--VDARTNS-RSGEA-ILIHR-----KGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 289 -~-------i~i--~d~~~~~-~~~~~-~~~~~-----~~~~i~~~~~~p~~~~~l~~ 329 (546)
. +++ ||..+.. ..... +.... ....+..+.+.+ ++.+|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 1 444 4544422 22211 11111 345788899988 7776554
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.81 E-value=2.6 Score=42.88 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec--CCCCEEEEEeCCCcEEEEeCCCC-----C
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTN-----S 299 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~-----~ 299 (546)
++..++-+....+.|||.+.+.....-..... ..|..+.|. |+++.+++.+-.+.|.+|.-... .
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~--------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSED--------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCC--------CceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 44444444456799999998875444333222 258888884 68889998888899999865321 1
Q ss_pred CCc---ceEEeecC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 300 RSG---EAILIHRK-GSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 300 ~~~---~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
+.. +.+....+ ..+|.+..|.+ +|.+++.+ .+.+.|++-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 111 11111221 24789999998 77655544 457888875
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=9.7 Score=36.50 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCC--CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
+.+-|...+ +.|++.. .|.+.=|-+.. ...+..+.....++|.++.|+++ ++.|+.--.+++|.+++....+...
T Consensus 26 ngvFfDDaN-kqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDAN-KQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCc-ceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhh
Confidence 344454444 4343332 34455565443 23344444456779999999999 9999999999999999985443332
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE-E
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS-C 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~ 330 (546)
...... ......|..+.|+.+. -+|.....| +-+|-+.......... ..+...|.-..|++ +.+.++. .
T Consensus 103 ~~~~~c-----k~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlV--ks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQEC-----KTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLV--KSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred HHHHHh-----ccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhh--hhcccCccEEEEcc-ccceEeeec
Confidence 221110 0111148888998774 444444333 4555544433322222 23334677888888 5554433 3
Q ss_pred e-CCCeEEEEECC
Q 009022 331 G-NDHFARIWDIR 342 (546)
Q Consensus 331 ~-~dg~i~iwd~~ 342 (546)
+ ..+++.=+.++
T Consensus 173 ~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 173 TVLENVLNPFHFR 185 (657)
T ss_pred cccccccccEEEe
Confidence 3 33344444443
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=2.5 Score=46.15 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV 203 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~ 203 (546)
....++|+|.. .++|.|...|.|+++-...-
T Consensus 37 ~~~~~afD~~q-~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 37 TPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCcceeecccc-ceEEEEEecccEEEecccce
Confidence 55678899988 79999999999999976543
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.59 E-value=4 Score=39.55 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=86.3
Q ss_pred CCEEE-EEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCC-------CEEEEEeCCCcEEEEeCCCC
Q 009022 227 DGTVY-AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-------GVVLVADNFGFLYLVDARTN 298 (546)
Q Consensus 227 ~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~i~d~~~~ 298 (546)
..+|+ .++....++-.|+..|+.+.....+.. + -+.|.|.. ..-++|-.+..|.-.|.+-.
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 44544 455566788889999999888876653 2 34555532 23345555666666676653
Q ss_pred CCCcceEEeecCCCcEEEEEECC---CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 299 SRSGEAILIHRKGSKVVGLHCNP---IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
.. ++ ........++.-.|+. ....++|+++..|-|++||--.......+. +....|..+..+.+|.++++.+
T Consensus 548 gN--Ki-~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 548 GN--KI-KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred CC--ce-eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEee
Confidence 31 11 1111111122222221 145789999999999999964322222232 4556789999999999887776
Q ss_pred CCCcEEEEECC
Q 009022 376 QDNRLRIWDSI 386 (546)
Q Consensus 376 ~dg~i~vwd~~ 386 (546)
. ..+.+-|++
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 468888875
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.05 E-value=12 Score=36.25 Aligned_cols=150 Identities=12% Similarity=0.112 Sum_probs=87.1
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCce---eEEecccCCCceEEEEEe---cCCCCEEEEEeCCCeEEEEECCCC--c---
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFN---PTNDGTVYAASSDGTVSCTDLETG--L--- 248 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~--~--- 248 (546)
+++...+++|+..|.++||+...... ...+...-..+|..+..- +......++.-.-..+.+|.+... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 34445799999999999999865431 122223456788888653 222333444455577888887321 1
Q ss_pred ----eeeeeecCCCCCCCCCcccceEEEEecC----C-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 249 ----ALSLMNVNPNGWHGPRTWRMLYGMDINP----E-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 249 ----~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
.+..+.-|. -......+++-| . ..+|.+-+-||.+.+|+-........+ ...- -...+.|
T Consensus 114 g~~~~L~~~yeh~-------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-p~~l---lPgPl~Y 182 (418)
T PF14727_consen 114 GNQYQLELIYEHS-------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-PDFL---LPGPLCY 182 (418)
T ss_pred CcEEEEEEEEEEe-------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-CCCC---CCcCeEE
Confidence 111111111 111244444433 2 467888999999999987653211111 1111 2334677
Q ss_pred CCCCCCEEEEEeCCCeEEEEEC
Q 009022 320 NPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
.| ....|++++.+..|.-|..
T Consensus 183 ~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 183 CP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ee-cCCEEEEecCceeEEEecH
Confidence 77 7778888888888888865
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=5.1 Score=43.62 Aligned_cols=164 Identities=9% Similarity=0.092 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEE--------ecCCCCEEEEEeCCCeEEEEECC
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF--------NPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
..+-+-|.=.+.=+ +.|+.+.+|+..+......+ .+-...|..|.. .|.-..+|+.+ .--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~ 157 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVS 157 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEE
Confidence 34444444323333 44778999999986666555 455566666643 22212233333 33456665443
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC-----C--------------CCcceEE
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-----S--------------RSGEAIL 306 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~--------------~~~~~~~ 306 (546)
-.........-...+.-......|.++....+|+.+++| .||.|+-+-.... + ....+..
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 211111000000000011112358888877777766655 4555543221111 0 0011112
Q ss_pred ee-cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 307 IH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 307 ~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
.. .+..+|..+++.. ....+.+-+..|+|.+|++..
T Consensus 237 ~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 22 3456899999987 677888999999999999975
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=91.82 E-value=6.6 Score=39.44 Aligned_cols=145 Identities=4% Similarity=-0.136 Sum_probs=68.1
Q ss_pred CCEEEEEeCCC-----eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--CcEEEEeCCCCC
Q 009022 227 DGTVYAASSDG-----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--GFLYLVDARTNS 299 (546)
Q Consensus 227 ~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~ 299 (546)
+.++++|+.++ .+..||..+.........+.. .. -.++ ..-++...++|+.+ ..+..||..+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----r~---~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----RL---YASG-VPANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----hh---cceE-EEECCEEEEECCcCCCCceEEEECCCCe
Confidence 55667776542 567788877654332221111 00 1111 12366777777653 457788876543
Q ss_pred CCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC
Q 009022 300 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 376 (546)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~ 376 (546)
... .............+.+ ++.+.+.||.++ .+..||..+.. ......+.....-.+++ .-++.+.+.|
T Consensus 343 W~~-~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~-~~~~~IYv~G-- 414 (480)
T PHA02790 343 WVN-MPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCAL-VFGRRLFLVG-- 414 (480)
T ss_pred EEE-CCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEE-EECCEEEEEC--
Confidence 211 1011111111122222 567777777553 46778876432 11111111111111222 2266666666
Q ss_pred CCcEEEEECCCCC
Q 009022 377 DNRLRIWDSIFGN 389 (546)
Q Consensus 377 dg~i~vwd~~~~~ 389 (546)
|.+.+||..+.+
T Consensus 415 -G~~e~ydp~~~~ 426 (480)
T PHA02790 415 -RNAEFYCESSNT 426 (480)
T ss_pred -CceEEecCCCCc
Confidence 357788876544
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=5.3 Score=38.17 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=73.7
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE-eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 346 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 346 (546)
+|.++.|++|.+.||+--.+..|.+++....+....... .......|..+.|.. + .-+|.....| +-+|-+...+.
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEchhhh
Confidence 699999999999999999999999998854333222211 122334699999996 3 5566555444 66676543221
Q ss_pred Cceeeec-CCCCcEEEEEEeCCCCEEEEEeC--CCcEEEEECCCC
Q 009022 347 GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ--DNRLRIWDSIFG 388 (546)
Q Consensus 347 ~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~--dg~i~vwd~~~~ 388 (546)
.++.. .|...|+-..|+++.+.++.++. .+++.=+-++++
T Consensus 145 --slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 145 --SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred --hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 22222 57778888899997776554443 444444444444
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.62 E-value=12 Score=35.23 Aligned_cols=106 Identities=9% Similarity=0.007 Sum_probs=51.4
Q ss_pred cEEEEEcCC-----CcEEEEeCCCCcee--EEecccCCCce--EEEEEecCCCCEEEEEeC-----CCeEEEEECCCCce
Q 009022 184 HILLSGDKK-----GQVGVWDFYKVSEK--IVYGNIHSCIV--NNIRFNPTNDGTVYAASS-----DGTVSCTDLETGLA 249 (546)
Q Consensus 184 ~~l~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~ 249 (546)
.+++.|+.+ ..+..+|+.+.... ......-..+. .+++.. + +.+++.|+. ...+..||+.+.+-
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 677777754 34666776654421 11111111111 122222 3 566666664 24578888876654
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC----cEEEEeCCCCC
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNS 299 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 299 (546)
...-..+... .....+...++++.+.|+.++ .+..||+.+.+
T Consensus 152 ~~~~~~p~~~--------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGEP--------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCCC--------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3321111110 011122234567777777653 35688887654
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=1.8 Score=41.81 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=49.1
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCC---------CCC---------CceeeecCCCCcEEEEEEeCCC---CEE
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRR---------LEA---------GSSLCDLPHKRVVNSAYFSPSG---SKI 371 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~---------~~~---------~~~~~~~~~~~~v~~~~~~p~~---~~l 371 (546)
.|..+..++ .|..++..|.+|.+..+=.+. ++. ...+......-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 577788899 888888888888665543221 111 1111111122246678999954 677
Q ss_pred EEEeCCCcEEEEECCCCC
Q 009022 372 LTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~ 389 (546)
..-+.|+.||+|++..-.
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 778889999999997543
No 447
>PLN02193 nitrile-specifier protein
Probab=91.40 E-value=16 Score=36.64 Aligned_cols=150 Identities=13% Similarity=-0.030 Sum_probs=68.5
Q ss_pred cEEEEEcCC-------CcEEEEeCCCCceeEEeccc-CCC--ceE-EEEEecCCCCEEEEEeCC-----CeEEEEECCCC
Q 009022 184 HILLSGDKK-------GQVGVWDFYKVSEKIVYGNI-HSC--IVN-NIRFNPTNDGTVYAASSD-----GTVSCTDLETG 247 (546)
Q Consensus 184 ~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~-~~~--~v~-~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 247 (546)
.+++.|+.+ ..+.+||+.+..-......+ ... ... +++. -+ +.+++.|+.+ ..+.+||+.+.
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~~-~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-IG-STLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-EC-CEEEEECCCCCCCCCccEEEEECCCC
Confidence 567777753 24777887765432211000 001 111 1222 22 5666777654 35888898876
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCcceEE--eecCCCcEEEEEEC
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCN 320 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~ 320 (546)
+-.........+ ..+ .-.+++ .-++++++.|+.++ .+..||+.+......... ..........+.+
T Consensus 255 ~W~~l~~~~~~P--~~R---~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~- 327 (470)
T PLN02193 255 EWKLLTPVEEGP--TPR---SFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV- 327 (470)
T ss_pred EEEEcCcCCCCC--CCc---cceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-
Confidence 543322111000 001 111222 23456666666543 467788776432110000 0000001112222
Q ss_pred CCCCCEEEEEeCC----CeEEEEECCCC
Q 009022 321 PIQPELLLSCGND----HFARIWDIRRL 344 (546)
Q Consensus 321 p~~~~~l~~~~~d----g~i~iwd~~~~ 344 (546)
++.+++.++.+ ..+.+||+.+.
T Consensus 328 --~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 328 --QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred --CCcEEEEECCCCCccCceEEEECCCC
Confidence 45677777655 45889998753
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.25 E-value=8.9 Score=36.91 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=73.0
Q ss_pred cEEEEEECCCCCCEEEEEe-----------CCC-eEEEEECCCCC-CCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 313 KVVGLHCNPIQPELLLSCG-----------NDH-FARIWDIRRLE-AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~-----------~dg-~i~iwd~~~~~-~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
....|+|.+ +++++++-. ..+ .|.+++-.... .......+ ........|++.+++ +++ ++..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 466788888 777766642 123 67666543221 11111122 223346789999888 444 4444
Q ss_pred cEEEE-ECCCCCCCCC-Cccee-eccCCc---ccCCceeEEecCCCCCCceeEEeee----eeec-----CCCCcCcceE
Q 009022 379 RLRIW-DSIFGNLDSP-SREIV-HSHDFN---RHLTPFRAEWDPKDPSESLAVIGRY----ISEN-----YNGAALHPID 443 (546)
Q Consensus 379 ~i~vw-d~~~~~~~~~-~~~~~-~~~~~~---~~~~~~~~~~~p~~~~~~~~~~g~~----~~~~-----~~g~~d~~i~ 443 (546)
.|..| +.. +..... ....+ ...... .+..+..+.|.|+. ......|.. .... ......+.|.
T Consensus 91 ~i~~~~d~~-gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKD-GDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCC-CCCCCCCccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 34444 443 221111 12222 111111 12334467788862 111111210 0000 0000124566
Q ss_pred EEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 444 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
-++..+++. ..+ .........+ +|+|+|+++++-.
T Consensus 168 r~~pdg~~~-e~~-a~G~rnp~Gl-~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKL-RVV-AHGFQNPYGH-SVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCCeE-EEE-ecCcCCCccc-eECCCCCEEEEcc
Confidence 666655442 222 2222444566 8999999887744
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.22 E-value=24 Score=37.89 Aligned_cols=172 Identities=12% Similarity=0.150 Sum_probs=102.0
Q ss_pred ccCCCeEEEEEc---CC---CCcEEEEEcCCCcEEEEeCC------CC---------ceeEEec--ccCCCceEEEEEec
Q 009022 168 YHSRRVTCLEFH---PT---NNHILLSGDKKGQVGVWDFY------KV---------SEKIVYG--NIHSCIVNNIRFNP 224 (546)
Q Consensus 168 ~h~~~V~~l~~~---~~---~~~~l~s~~~d~~i~iwd~~------~~---------~~~~~~~--~~~~~~v~~~~~~~ 224 (546)
.-..+|..|+|. .. ..++|++=. ...+.|+... .. ..+..+. ..-..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356789999998 31 114555544 4467777621 11 1111221 11234678899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcee--eeeec--C-CCCC-CCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009022 225 TNDGTVYAASSDGTVSCTDLETGLAL--SLMNV--N-PNGW-HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 298 (546)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~--~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 298 (546)
.....||+....|...||++...... ..+.. . .... ...........+.|.++...|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 87889999999999999999211111 11111 1 1111 11111123557889988888888876 67899999886
Q ss_pred CCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 299 SRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
..... +........|..+.-+|.+..+++.-. ...|...++..
T Consensus 235 ~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEY-LVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred Cccch-hccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 65332 233334458999999984344443332 36687888865
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.19 E-value=14 Score=35.01 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEe---cccCCCceEEEEEecC--CCCEEEEEeC-C-------
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVY---GNIHSCIVNNIRFNPT--NDGTVYAASS-D------- 236 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~---~~~~~~~v~~~~~~~~--~~~~l~s~~~-d------- 236 (546)
..++|+|.|+| ++|++ ...|.|++++..... ....+ ..........++|+|+ .+.+|..... .
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 45789999998 66665 559999999933322 11111 1234557899999993 1234433332 1
Q ss_pred -CeEEEEECCCC--c---eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe
Q 009022 237 -GTVSCTDLETG--L---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 285 (546)
Q Consensus 237 -g~i~iwd~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 285 (546)
..|.-|.+..+ . ....+...+.. .. .......|.|.|+|.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~-~~--~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDT-SS--GNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES--CS--SSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCC-CC--CCCCCccccCCCCCcEEEEeC
Confidence 24544554433 1 11111110110 00 111356799999996666654
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.63 E-value=3 Score=36.57 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=50.9
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee----eec--------CCCCcEEEEEEeCCCCEEEEEeCCCcE
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL----CDL--------PHKRVVNSAYFSPSGSKILTTSQDNRL 380 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~--------~~~~~v~~~~~~p~~~~l~s~s~dg~i 380 (546)
++..+.. .+.+|++.+.+|.+++||+.+.+....- ..+ .....|..+.++.+|.-|++-+ +|..
T Consensus 14 ~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 14 PVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred ceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 4555554 5688999999999999999876542111 111 2456788899998898887765 5788
Q ss_pred EEEECCCC
Q 009022 381 RIWDSIFG 388 (546)
Q Consensus 381 ~vwd~~~~ 388 (546)
+.|+..-+
T Consensus 90 y~y~~~L~ 97 (219)
T PF07569_consen 90 YSYSPDLG 97 (219)
T ss_pred EEeccccc
Confidence 99987543
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.45 E-value=2 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeee-ecCCCC----CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLM-NVNPNG----WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART 297 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 297 (546)
+.+|++.+.+|.+++||+.+++.+... ...+-- .........|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 789999999999999999988765433 111000 00002223577777777777665544 46777776543
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.40 E-value=0.64 Score=43.89 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=43.8
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC---CcEE-EEEECCCCCCEEEEEeCCCeEEEE-ECC
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVV-GLHCNPIQPELLLSCGNDHFARIW-DIR 342 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~i~-~~~~~p~~~~~l~~~~~dg~i~iw-d~~ 342 (546)
.+..+-..|+|+.+.+-+. ..+.++++.+.......+.....+ ..|+ .+.... .+..+++++.||.|.-| |++
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeeee
Confidence 4677888999999988776 778888877654332221111111 0122 111122 45667788888888776 554
Q ss_pred C
Q 009022 343 R 343 (546)
Q Consensus 343 ~ 343 (546)
.
T Consensus 300 ~ 300 (733)
T COG4590 300 R 300 (733)
T ss_pred c
Confidence 3
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.92 E-value=16 Score=33.69 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCcEEE-EEcC----------CCcEEEEeCCCCceeEEeccc-----CCCceEEEEEecCCC----CEEE
Q 009022 172 RVTCLEFHPTNNHILL-SGDK----------KGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTND----GTVY 231 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~-s~~~----------d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~l~ 231 (546)
.|..+...+.+.-+++ +|.. .-.|.+||+.+.+.+..+.-. ..+.+..+.+....+ .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4667777777732333 2211 137899999998876665311 245678888876422 2333
Q ss_pred EEe-CCCeEEEEECCCCceeeeeecCCCCCCCC----------CcccceEEEEecC---CCCEEEEEeCCC-cEEEEeC-
Q 009022 232 AAS-SDGTVSCTDLETGLALSLMNVNPNGWHGP----------RTWRMLYGMDINP---EKGVVLVADNFG-FLYLVDA- 295 (546)
Q Consensus 232 s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~---~~~~l~~~~~dg-~i~i~d~- 295 (546)
.+. ..+-|.++|+.+++.-+............ .....+..++.+| +++.|....-.+ .++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 333 34579999999998766554322111000 0011255666655 556666655433 2322221
Q ss_pred --CCCCCCc------ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec---CC-CCcEEEEE
Q 009022 296 --RTNSRSG------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PH-KRVVNSAY 363 (546)
Q Consensus 296 --~~~~~~~------~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~~v~~~~ 363 (546)
+...... ........+.....+++.+ ++.++++--..+.|..|+..+.-....+..+ .. -..+..+.
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 1111111 1112222223567788888 8888888888999999998753222222222 22 35677888
Q ss_pred EeC--CCCEEEEE
Q 009022 364 FSP--SGSKILTT 374 (546)
Q Consensus 364 ~~p--~~~~l~s~ 374 (546)
+.+ +|.+.+.+
T Consensus 241 i~~~~~g~L~v~s 253 (287)
T PF03022_consen 241 IDPEGDGYLWVLS 253 (287)
T ss_dssp E-T--TS-EEEEE
T ss_pred eccccCceEEEEE
Confidence 877 55544443
No 455
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=89.78 E-value=0.12 Score=56.45 Aligned_cols=11 Identities=9% Similarity=0.407 Sum_probs=6.5
Q ss_pred CeEEEEEcCCC
Q 009022 172 RVTCLEFHPTN 182 (546)
Q Consensus 172 ~V~~l~~~~~~ 182 (546)
.|..+..-|-|
T Consensus 396 gi~~i~v~pyg 406 (2849)
T PTZ00415 396 GIAAITIEPYG 406 (2849)
T ss_pred ceEEEEEeeCC
Confidence 45566666655
No 456
>PLN02153 epithiospecifier protein
Probab=89.23 E-value=21 Score=34.02 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=33.1
Q ss_pred cEEEEEcCC-------CcEEEEeCCCCceeEEecccC--CC---ceEEEEEecCCCCEEEEEeCC-----CeEEEEECCC
Q 009022 184 HILLSGDKK-------GQVGVWDFYKVSEKIVYGNIH--SC---IVNNIRFNPTNDGTVYAASSD-----GTVSCTDLET 246 (546)
Q Consensus 184 ~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 246 (546)
.+++.|+.+ ..+.+||+.+..-........ .. ....+.+ . +.+++.|+.+ ..+.+||+.+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G-TKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C-CEEEEECCCCCCCccCcEEEEECCC
Confidence 677777753 357788877654322110000 10 1112222 2 5677777653 3577888876
Q ss_pred Ccee
Q 009022 247 GLAL 250 (546)
Q Consensus 247 ~~~~ 250 (546)
.+-.
T Consensus 111 ~~W~ 114 (341)
T PLN02153 111 NEWT 114 (341)
T ss_pred CEEE
Confidence 5543
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.99 E-value=0.21 Score=51.20 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=51.9
Q ss_pred eeccccCCCeEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEE-----------EecCCCCE
Q 009022 164 AVIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIR-----------FNPTNDGT 229 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~ 229 (546)
+........+.-+.|+| +. -++..+..++.|++..+..... .+..+|...+..++ .+|| |..
T Consensus 174 ~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv 249 (1283)
T KOG1916|consen 174 TPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTV 249 (1283)
T ss_pred eecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCC-CcE
Confidence 33444444455556655 44 4677778889999988776443 22245777666554 4788 888
Q ss_pred EEEEeCCCeEEEEECC
Q 009022 230 VYAASSDGTVSCTDLE 245 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~ 245 (546)
|+.++.||.+++|.+.
T Consensus 250 ~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 250 FAWAISDGSVGFYQIY 265 (1283)
T ss_pred EEEeecCCccceeeee
Confidence 9999999988888764
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.94 E-value=0.076 Score=50.36 Aligned_cols=144 Identities=17% Similarity=0.095 Sum_probs=93.0
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE-EeCCCcEEEE
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLV 293 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~ 293 (546)
.......|.|. +.-++.++.+..+..||-. ++.......+. ....++|..++..+++ +-..+.+++|
T Consensus 35 v~pi~~~w~~e-~~nlavaca~tiv~~YD~a-gq~~le~n~tg----------~aldm~wDkegdvlavlAek~~piylw 102 (615)
T KOG2247|consen 35 VGPIIHRWRPE-GHNLAVACANTIVIYYDKA-GQVILELNPTG----------KALDMAWDKEGDVLAVLAEKTGPIYLW 102 (615)
T ss_pred cccceeeEecC-CCceehhhhhhHHHhhhhh-cceecccCCch----------hHhhhhhccccchhhhhhhcCCCeeec
Confidence 33445678888 5557777778888888854 44433332221 3566778877776555 5678999999
Q ss_pred eCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-CCCcEEEEEEeCCCCEEE
Q 009022 294 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~ 372 (546)
|+.+....... ....+ .-.-+.|++ ....++.+...|.+.|++..+.+ .+...| |...+++++|.+.+.. +
T Consensus 103 d~n~eytqqLE-~gg~~--s~sll~wsK-g~~el~ig~~~gn~viynhgtsR---~iiv~Gkh~RRgtq~av~lEd~v-i 174 (615)
T KOG2247|consen 103 DVNSEYTQQLE-SGGTS--SKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSR---RIIVMGKHQRRGTQIAVTLEDYV-I 174 (615)
T ss_pred hhhhhhHHHHh-ccCcc--hHHHHhhcc-CCccccccccccceEEEeccchh---hhhhhcccccceeEEEeccccee-e
Confidence 99875432211 11111 222377888 77888888899999999986533 333345 8899999999986654 3
Q ss_pred EEeCCC
Q 009022 373 TTSQDN 378 (546)
Q Consensus 373 s~s~dg 378 (546)
.++.|.
T Consensus 175 l~dcd~ 180 (615)
T KOG2247|consen 175 LCDCDN 180 (615)
T ss_pred ecCcHH
Confidence 444343
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=13 Score=36.37 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=22.4
Q ss_pred cEEEEEECCCC--CCEEEEEeCCCeEEEEECCCC
Q 009022 313 KVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 313 ~i~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.+..++|+|.. ...|+.-+.|.+|++||+...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 45667788833 356666677888999988643
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.46 E-value=25 Score=34.09 Aligned_cols=153 Identities=8% Similarity=0.046 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
+....+..+++| .+++.+..-..++-|+-....-. .+.......+..+.|.++ +.+++++ ..|.+. |....+..-
T Consensus 239 Gsf~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~-~~~~~~~~~l~~v~~~~d-g~l~l~g-~~G~l~-~S~d~G~~~ 313 (398)
T PLN00033 239 GTFSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQ-PHNRASARRIQNMGWRAD-GGLWLLT-RGGGLY-VSKGTGLTE 313 (398)
T ss_pred cceeeEEEcCCC-CEEEEECCccEEEecCCCCcceE-EecCCCccceeeeeEcCC-CCEEEEe-CCceEE-EecCCCCcc
Confidence 345566778888 56776665433444553321101 111334567899999887 7666655 456543 444444321
Q ss_pred -----eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 251 -----SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 251 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
....... ....+..+.|.+++..+++| ..|.+.... ..++..........-....+.+.|.+ +++
T Consensus 314 ~~~~f~~~~~~~-------~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~ 383 (398)
T PLN00033 314 EDFDFEEADIKS-------RGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKK 383 (398)
T ss_pred cccceeecccCC-------CCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCc
Confidence 1111110 11247888898877765555 457666553 22222111111122234688999876 555
Q ss_pred EEEEEeCCCeEEEE
Q 009022 326 LLLSCGNDHFARIW 339 (546)
Q Consensus 326 ~l~~~~~dg~i~iw 339 (546)
.+++| .+|.|.-|
T Consensus 384 g~~~G-~~G~il~~ 396 (398)
T PLN00033 384 GFVLG-NDGVLLRY 396 (398)
T ss_pred eEEEe-CCcEEEEe
Confidence 55554 57877655
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.39 E-value=19 Score=32.55 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=116.8
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCC-CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
+-+..+.++. .++..+..+.-++|.|+.+...+.....-.. +--.++..+ +++...+..+.-+.+.|+.+.+.
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCCC
Confidence 3455666764 3566777778899999998776655533233 333444444 78888888666677888876543
Q ss_pred ee---eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 250 LS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 250 ~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
.. ....... ....++. .|++..++..++-+.+.|+.....+. ++.....+..+.++..++ +..+
T Consensus 161 P~lagrya~~~~---------d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsd-nr~y 227 (370)
T COG5276 161 PQLAGRYALPGG---------DTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSD-NRAY 227 (370)
T ss_pred ceeeeeeccCCC---------CceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecC-CeeE
Confidence 22 1211111 1123333 37788888899999999998765543 212222233678888887 4444
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEE-EEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSA-YFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++.. +--+.+-|....+....+-...... +.++ .+.-.+++......+.-+-+-|+.+
T Consensus 228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~-p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSN-PVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEc--ccceEEEecCCCCCceEeeccccCC-cccccceecccceeeeeccccCceeEeccC
Confidence 4443 4457788887666544443333332 3333 2222667777777777777777754
No 462
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.38 E-value=22 Score=38.78 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=82.1
Q ss_pred cEEEEEc---------CCCcEEEEeCCC-----C------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 184 HILLSGD---------KKGQVGVWDFYK-----V------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 184 ~~l~s~~---------~d~~i~iwd~~~-----~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.||+.|. ..|.+.|+|+-. + +....+....+++|..++=. ..+|+++.. ..|.+|.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~G-qKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQG-QKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccC-cEEEEEE
Confidence 3677774 258899999732 1 12222334567888887754 335555543 5799999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
++....+.-+.+-.. +++-.+...=+++|+.|.--..|.+.-.........++.-....-.++++.|--+.
T Consensus 1123 l~r~~~ligVaFiD~---------~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg 1193 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDL---------PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG 1193 (1366)
T ss_pred eccCCcceeeEEecc---------ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcC
Confidence 944332222111111 13333344456788888877778777665433222222222222356777776522
Q ss_pred -CCEEEEEeCCCeEEEEEC
Q 009022 324 -PELLLSCGNDHFARIWDI 341 (546)
Q Consensus 324 -~~~l~~~~~dg~i~iwd~ 341 (546)
.-.++++..+++|++|-.
T Consensus 1194 ~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1194 SNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred CeeEEEEEcCCCcEEEEEe
Confidence 236788888999998865
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.34 E-value=11 Score=29.66 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=68.2
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC-CcceeeccCCcccCCcee-EEecCCCCCCceeEEeeeeeecCCCCcC
Q 009022 362 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP-SREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENYNGAAL 439 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~~g~~d 439 (546)
-.|.....-|+.++..|.|.|++......... ....+....+++.+..+. -.+.|......+.+ +..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~Lli-----------Gt~ 72 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLI-----------GTQ 72 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEE-----------ecc
Confidence 45655566788888889999998765432221 222233334444443322 23444332222222 233
Q ss_pred cceEEEECCchhhhHhhcCCCCCccccee--eecC-CCcEEEEecCCcEEEEcCCCCCccce
Q 009022 440 HPIDFIDITTGQLVAEVMDPNITTISPVN--KLHP-RDDVLASGSSRSIFIWRPKEKSELVE 498 (546)
Q Consensus 440 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~--~~s~-~~~~l~sgsdg~i~vwd~~~~~~~~~ 498 (546)
..|..||+....-+..-.-+ ..+.++. .+.. ...+++.|+...|.-||..-.+...+
T Consensus 73 t~llaYDV~~N~d~Fyke~~--DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVP--DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ceEEEEEcccCchhhhhhCc--cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 56889999877655433222 3444442 2333 45677778788888888765444443
No 464
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.28 E-value=26 Score=37.64 Aligned_cols=135 Identities=14% Similarity=0.041 Sum_probs=74.7
Q ss_pred CCcEEEEeCCCCceeEEec--ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 192 KGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
+|.++.|++-.......+. ..-.++|. +..|. ..++++|- ...+++|++...+.++....... ...|
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f-~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~-------p~~I 979 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPF-QGRVLAGV-GRFLRLYDLGKKKLLRKCELKFI-------PNRI 979 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEecc-CCEEEEec-ccEEEEeeCChHHHHhhhhhccC-------ceEE
Confidence 3446666654333222222 11223343 45576 44555443 46899999988877766544321 1236
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Q 009022 270 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 341 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~ 341 (546)
..+++ .+..+++|+..-.+.++-.+........+........|+++.+- +...+|.+..=|.+.+..+
T Consensus 980 s~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 980 SSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 66555 56788888877777666555433222222222223356666665 4566777777677766655
No 465
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.27 E-value=46 Score=36.86 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=46.7
Q ss_pred eccccCCCeEEEEEcC--CCCcEE----EEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEE-EecCCCCEEEEEeCC
Q 009022 165 VIRYHSRRVTCLEFHP--TNNHIL----LSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIR-FNPTNDGTVYAASSD 236 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~--~~~~~l----~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~l~s~~~d 236 (546)
...||...|.|....- ++.++| ++.+.||.+.|=|.+- +..+. .+....|..+. -.|...-++|..-.|
T Consensus 342 mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvd 418 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVD 418 (1899)
T ss_pred ccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecCcC
Confidence 4567888888866542 122333 3456788888877642 22221 12222222222 123324456666678
Q ss_pred CeEEEEECCCCceeeeee
Q 009022 237 GTVSCTDLETGLALSLMN 254 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~ 254 (546)
|++.+-|..+.+..+.-.
T Consensus 419 gtlyvSdp~s~qv~rv~s 436 (1899)
T KOG4659|consen 419 GTLYVSDPLSKQVWRVSS 436 (1899)
T ss_pred ceEEecCCCcceEEEecc
Confidence 888888877766554433
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.25 E-value=41 Score=36.21 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=96.2
Q ss_pred cCCCceEEEEEe---cC---CCCEEEEEeCCCeEEEEECCCCce---------------eeeeecCCCCCCCCCcccceE
Q 009022 212 IHSCIVNNIRFN---PT---NDGTVYAASSDGTVSCTDLETGLA---------------LSLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 212 ~~~~~v~~~~~~---~~---~~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~ 270 (546)
....+|..|+|. .. ..++|++- ....+.|+...-.+. +..+..+. ....+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~------tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD------TGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhh------cCCCccc
Confidence 467899999998 21 12354444 446777777322211 11111111 1112467
Q ss_pred EEEecC-CCCEEEEEeCCCcEEEEeCCCCC--CCcceEEeecC----------CCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 271 GMDINP-EKGVVLVADNFGFLYLVDARTNS--RSGEAILIHRK----------GSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 271 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~----------~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
.++|+| +...||+.+..|...||++.... ........... ......|.|.+ +...|++++ ...+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RSKLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CCceE
Confidence 789998 46689999999999999992211 11111111111 12344788987 666677665 55788
Q ss_pred EEECCCCCCCceeeecCCCCcEEEEEEeCC-CCEEEEEeCCCcEEEEECCCC
Q 009022 338 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~s~s~dg~i~vwd~~~~ 388 (546)
++|+.+......+........|..+.-+|. ..+++.- +...|...++...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 999986554332322345677888888885 2333333 2356888887653
No 467
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.76 E-value=2.4 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=22.6
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCC--CcEEEE
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKK--GQVGVW 198 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d--~~i~iw 198 (546)
......-.+..|+|+|..++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34555778899999997777777777 777666
No 468
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=87.52 E-value=0.11 Score=48.73 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=3.2
Q ss_pred CEEEEEeC
Q 009022 228 GTVYAASS 235 (546)
Q Consensus 228 ~~l~s~~~ 235 (546)
.=|++|+.
T Consensus 193 TDFVCGTL 200 (458)
T PF10446_consen 193 TDFVCGTL 200 (458)
T ss_pred ccccCCCc
Confidence 33444433
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=87.39 E-value=27 Score=33.13 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=82.5
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
-...+..+.+.|+ +.+++++ ..|.+..-.-..++.-........ ..++++.+.+++..++++. .|.+.+
T Consensus 171 ~~g~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~--------~~l~~i~~~~~g~~~~vg~-~G~~~~ 239 (334)
T PRK13684 171 AAGVVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSS--------RRLQSMGFQPDGNLWMLAR-GGQIRF 239 (334)
T ss_pred CcceEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeEEEeeCCCc--------ccceeeeEcCCCCEEEEec-CCEEEE
Confidence 3557889999987 6555554 456554321122222222211111 2588999999988777654 466543
Q ss_pred EeCCCCCCCcceEEe-ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCE
Q 009022 293 VDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~ 370 (546)
-....+......... ......+..+.+.| ++..+++| .+|.|.. ....++.-..+.. .......+.+.|..++..
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCce
Confidence 223332221111110 01122578889988 66655554 5676543 3333333222221 122346788888877766
Q ss_pred EEEEeCCCcEEEEE
Q 009022 371 ILTTSQDNRLRIWD 384 (546)
Q Consensus 371 l~s~s~dg~i~vwd 384 (546)
+++| ..|.|-.|+
T Consensus 317 ~~~G-~~G~il~~~ 329 (334)
T PRK13684 317 FVLG-QRGVLLRYV 329 (334)
T ss_pred EEEC-CCceEEEec
Confidence 6655 677777665
No 470
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=47 Score=35.62 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=43.0
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe----------cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY----------GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
+..-| +.|..|+.+|.+.+|.+......... ...+..+|..+...+. -.++++- .|+.|.++.+.+-
T Consensus 22 va~~~-~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~-~~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 22 VAAYG-NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCAS-LELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred HHHhC-CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcch-hcchhee-cCCcceeeecCcc
Confidence 33445 57999999999999998764221111 0124567777777775 4444443 4567888877655
Q ss_pred ce
Q 009022 248 LA 249 (546)
Q Consensus 248 ~~ 249 (546)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 44
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.01 E-value=5.6 Score=37.96 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=96.2
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceE-EEEecCCCCEEEEEeCCCc
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY-GMDINPEKGVVLVADNFGF 289 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~ 289 (546)
......|..+-..|+ ++.+..-+. ..+.++++.+...... +.-... .+ .....|. .+..-..|..++++..||.
T Consensus 217 ~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~ds-pg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIR-KLVDDS-PG-DSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchh-hhhhcC-CC-chHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 445567888889999 887776665 6788998876543222 111100 00 0001122 2223446777889999998
Q ss_pred EEEE-eCCCCCCCc-ceEE-eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC
Q 009022 290 LYLV-DARTNSRSG-EAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 366 (546)
Q Consensus 290 i~i~-d~~~~~~~~-~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p 366 (546)
|.-| |++...... .... ..-.+.++..+.-.. +.+-+++-+..|++.++.....+ .+........+.-+++||
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~---~lL~~~~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEK---LLLFERAYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCc---ceehhhhhcCcceeeeCc
Confidence 8776 555433221 1111 111112333332222 44567777888888888764322 221112233566789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
++.++++- ..|.|+++.+.+..
T Consensus 368 ~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 368 NQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred ccchheee-cCCceEEEEecCCC
Confidence 99998875 46789999887654
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.91 E-value=34 Score=33.80 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE-----e-cccCCCceEEEEEecC
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-----Y-GNIHSCIVNNIRFNPT 225 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----~-~~~~~~~v~~~~~~~~ 225 (546)
..+...-..-+.|+|.|+| ++|++--..|.|++++..+...... + ...-......|+|+|+
T Consensus 23 ~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3444455678899999999 6777665469999998654432111 1 1113567899999987
No 473
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.83 E-value=28 Score=32.79 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=50.0
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCceeee-eecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-----CCcEEEEeC
Q 009022 227 DGTVYAASSD-----GTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDA 295 (546)
Q Consensus 227 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~ 295 (546)
+.+++.|+.+ ..+..||+.+...... ......+ .... -.+++ .-++.+.+.|+. ...+..||+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp--~~~~---~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP--FTFE---NGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC--cCcc---CceEE-EECCEEEEEeCcCCCccCceEEEEcC
Confidence 5677777754 3567777776553111 1111111 0000 11112 224566666654 246888898
Q ss_pred CCCCCCcceEEeec-CCCcEEEEEECCCCCCEEEEEeCCC----eEEEEECCC
Q 009022 296 RTNSRSGEAILIHR-KGSKVVGLHCNPIQPELLLSCGNDH----FARIWDIRR 343 (546)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~ 343 (546)
.+.+..... .... .......+.+ ++.+.+.|+.++ .+.+||+.+
T Consensus 147 ~~~~W~~~~-~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 147 ETQEWFELP-DFPGEPRVQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCCeeECC-CCCCCCCCcceEEEE---CCEEEEEcCCCCccccceEEEecCC
Confidence 865432111 1111 1111111222 567777777654 356788765
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.21 E-value=2.8 Score=43.02 Aligned_cols=68 Identities=24% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC-CCceeee--------------c---------CCCCcEEEEEEeC----CCCEEEEE
Q 009022 323 QPELLLSCGNDHFARIWDIRRLE-AGSSLCD--------------L---------PHKRVVNSAYFSP----SGSKILTT 374 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--------------~---------~~~~~v~~~~~~p----~~~~l~s~ 374 (546)
++..|+.+..||.+......... ....... + .....+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55777778888888877765311 0000000 0 0123456666666 77899999
Q ss_pred eCCCcEEEEECCCCCC
Q 009022 375 SQDNRLRIWDSIFGNL 390 (546)
Q Consensus 375 s~dg~i~vwd~~~~~~ 390 (546)
+.|+++|+||+.++++
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999887
No 475
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=86.06 E-value=0.33 Score=40.10 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=5.1
Q ss_pred CCcccccc
Q 009022 1 MAPQTRRM 8 (546)
Q Consensus 1 ~~~~~~~~ 8 (546)
|+|++...
T Consensus 1 m~p~~~~~ 8 (187)
T PF11081_consen 1 MPPKKNAK 8 (187)
T ss_pred CCCCCccc
Confidence 88875543
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.90 E-value=25 Score=31.45 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=119.8
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..-..++-.|+| ..-+++...+.|--.|..+++....- .+....-..|..-|+ +..-++=+.. -|.-.|-++....
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPD-GSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCC-CCeeEecCcc-eeEEecCcccceE
Confidence 345678888999 67788888888888888888766655 355556677778888 4444443322 4555565554432
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
.+.+... ..........|.+.|++-+++... +.|.+|... .+...+.|+..|
T Consensus 138 -~f~lp~~-----~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG~gpyGi~atp 198 (353)
T COG4257 138 -RFPLPLE-----HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QGGGPYGICATP 198 (353)
T ss_pred -Eeecccc-----cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CCCCCcceEECC
Confidence 2333211 111246778899999988887521 233344322 223567888999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++...++.-.+..|-..|..+... ..+..- .....-..+--+|.|..-++....+.+..||-.+
T Consensus 199 -dGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 199 -DGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred -CCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 888888877777888888765422 222211 2123344555667888888877778888887654
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.75 E-value=0.12 Score=49.14 Aligned_cols=149 Identities=9% Similarity=0.071 Sum_probs=95.7
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
|-..-....|-|.+.+ |+.++.+..+..||-........ ..++....++|.-++...++.+-..+.+.+|++.+..
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~le~---n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVILEL---NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhhcceeccc---CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3334445667787744 77777788888898654332222 2456667788888745556667778999999998654
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
.. .+...... .-.-+.|++....++.+...|.+.+++..+.+... ....|...+++++|.+ .+ +.+
T Consensus 109 tq-qLE~gg~~--------s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~l-Ed-~vi 174 (615)
T KOG2247|consen 109 TQ-QLESGGTS--------SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTL-ED-YVI 174 (615)
T ss_pred HH-HHhccCcc--------hHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecc-cc-eee
Confidence 32 22211110 11226789999999999999999999988755432 3344555899999987 43 444
Q ss_pred EEeCCCe
Q 009022 329 SCGNDHF 335 (546)
Q Consensus 329 ~~~~dg~ 335 (546)
.++.|..
T Consensus 175 l~dcd~~ 181 (615)
T KOG2247|consen 175 LCDCDNT 181 (615)
T ss_pred ecCcHHH
Confidence 4444443
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.32 E-value=16 Score=28.69 Aligned_cols=109 Identities=9% Similarity=0.096 Sum_probs=64.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCCCCc----ceEEeecCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEECCCC
Q 009022 273 DINPEKGVVLVADNFGFLYLVDARTNSRSG----EAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 273 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~i~~~~~~p~----~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.|......|++++..|.|.|++........ ..+....-...|++++-.+. ....|+.|+ ...|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 355556678899999999999876543211 11122223336787765542 245666665 667999999753
Q ss_pred CCCceeeecCCCCcEEEEEEeC----CCCEEEEEeCCCcEEEEECC
Q 009022 345 EAGSSLCDLPHKRVVNSAYFSP----SGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~p----~~~~l~s~s~dg~i~vwd~~ 386 (546)
.. .+ ...-...|+++.+-. ...++++| .+..|.-||..
T Consensus 84 ~d--~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 84 SD--LF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred ch--hh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 33 22 223456688887743 23444444 45566666654
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.92 E-value=42 Score=33.12 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCC
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK 278 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 278 (546)
...+.|+|.|+ +++|++--..|.|++++..++........... ........+..|+++|+-
T Consensus 30 ~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v--~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEI--VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCce--eccCCCCceeeEEECCCc
Confidence 34578999998 77766655469999998765543222211110 000012247899999874
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.78 E-value=6 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred ceEEEEEecCC-----CCEEEEEeCCCeEEEEECCC
Q 009022 216 IVNNIRFNPTN-----DGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 216 ~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 246 (546)
.|..++|+|.+ ..+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999953 56788899999999998764
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.60 E-value=14 Score=40.61 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=25.0
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDART 297 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 297 (546)
...++|+|...+++.++..|.|.+|-...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccc
Confidence 55688999999999999999999986543
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.21 E-value=11 Score=31.61 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.5
Q ss_pred CcEEEEEEeCCC------CEEEEEeCCCcEEEEECCC
Q 009022 357 RVVNSAYFSPSG------SKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 357 ~~v~~~~~~p~~------~~l~s~s~dg~i~vwd~~~ 387 (546)
..|..++|||.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4789999999999998653
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.72 E-value=28 Score=30.94 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=75.5
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCcceEE---eecCCC
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---GFLYLVDARTNSRSGEAIL---IHRKGS 312 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~---~~~~~~ 312 (546)
-.+||+.+++... +...... -+.+-.+.++|++|.+|+.. ..+++++............ ......
T Consensus 48 s~~yD~~tn~~rp-l~v~td~--------FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDT--------FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCC--------cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC
Confidence 3578888876543 2222222 24455678899999998642 3677887654111111101 112223
Q ss_pred cEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCC-CceeeecC------CCCcEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHF-ARIWDIRRLEA-GSSLCDLP------HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 384 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~-~~~~~~~~------~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd 384 (546)
....+...| +++.|+.|+.... ..+|.-+.... ...+..+. ....--.+...|+|++|+.+..+ -.|||
T Consensus 119 WYpT~~~L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d 195 (243)
T PF07250_consen 119 WYPTATTLP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYD 195 (243)
T ss_pred ccccceECC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEe
Confidence 455666677 8999998887643 44444322111 11111111 11112245667899999888764 45668
Q ss_pred CCCCCC
Q 009022 385 SIFGNL 390 (546)
Q Consensus 385 ~~~~~~ 390 (546)
..+++.
T Consensus 196 ~~~n~v 201 (243)
T PF07250_consen 196 YKTNTV 201 (243)
T ss_pred CCCCeE
Confidence 776654
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.50 E-value=48 Score=32.66 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.4
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
..|.++...+..++|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999999999999999974
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.17 E-value=44 Score=31.98 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCE--EEEE-eCC---CcEEEEeCCCCCC
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGV--VLVA-DNF---GFLYLVDARTNSR 300 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~-~~d---g~i~i~d~~~~~~ 300 (546)
..+++.....+-+.+||+. |+.+..+.... ...-.....+.+ +++. |+++ .++ ..|++|.+.....
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr-----~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGR-----PNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCCC-----cceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 5677888888889999997 44555443210 000011222233 3332 3444 332 4688987753221
Q ss_pred CcceEE-----eecCCCcEEEEEE--CCCCCC-EEEEEeCCCeEEEEECCCCCCC----ceeeecCCCCcEEEEEEeCCC
Q 009022 301 SGEAIL-----IHRKGSKVVGLHC--NPIQPE-LLLSCGNDHFARIWDIRRLEAG----SSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 301 ~~~~~~-----~~~~~~~i~~~~~--~p~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~p~~ 368 (546)
..+.+. ....-..++.+|+ +|.++. ++++...+|.+..|-+...... ..++.+.-.+.+..|......
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 111100 1111124667776 443444 5666778899988887533222 345555556689999999988
Q ss_pred CEEEEEeCCCcEEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~ 386 (546)
.+|+.+-.+.-|+-|+..
T Consensus 220 g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp TEEEEEETTTEEEEEESS
T ss_pred CCEEEecCccEEEEEecC
Confidence 899999888878888775
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.94 E-value=54 Score=34.23 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=69.9
Q ss_pred EEEECCCCCCEEEEEeCCC-----eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.+.|-| .|..+++-+.|| .|.++..+-...+..-...+....+..++|.-....++++ ..+.|.+|-..+.+.
T Consensus 251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 478999 889999877555 4666665433333332233555667788887766655554 567899997654321
Q ss_pred CCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecC-----------CCCcCcceEEEECCc
Q 009022 391 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY-----------NGAALHPIDFIDITT 449 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~-----------~g~~d~~i~iwd~~~ 449 (546)
- +....... ...-+.|+|......+..+|..+...+ .-...|++.|.|-.+
T Consensus 329 Y-----LK~e~~ip---~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs~ 390 (1243)
T COG5290 329 Y-----LKVERQIP---GISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHGSEYPFDNGTSYVIDGSY 390 (1243)
T ss_pred E-----EEEeecCC---CcceeeeccccCcEEEEecCCeEEEEEeehhhhcCCcccCccCCceEEEcCce
Confidence 0 00000111 112468888876665555554443211 123456777776543
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.80 E-value=46 Score=31.88 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=104.4
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEe----cCCCCE--EEEEe-CC---CeEEEEECCC--Cceee
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN----PTNDGT--VYAAS-SD---GTVSCTDLET--GLALS 251 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~--l~s~~-~d---g~i~iwd~~~--~~~~~ 251 (546)
.+++...+.+-+.+||+...... .+. .+.++.+... -. +.. |+.++ .+ .+|++|.+.. +. +.
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq-~~~---~Gr~NNVDvrygf~l~-g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQ-SLP---VGRPNNVDVRYGFPLN-GKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEE-EE----SS-EEEEEEEEEEEET-TEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ceEEEEeCCCCEEEEcCCCcEEE-eec---CCCcceeeeecceecC-CceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 47777788889999999865443 332 2344444332 12 222 34444 32 4699997763 32 22
Q ss_pred eeecCCCCCCCCCcccceEEEEe--cC-CCC-EEEEEeCCCcEEEEeCCC---CCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDI--NP-EKG-VVLVADNFGFLYLVDART---NSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
.+.....+. ......++.+|+ ++ ++. ++++...+|.+..|-+.. +....++.+...-...+..+.... ..
T Consensus 143 ~v~~~~~p~--~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD-e~ 219 (381)
T PF02333_consen 143 DVTDPAAPI--ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD-ET 219 (381)
T ss_dssp E-CBTTC-E--E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET-TT
T ss_pred EcCCCCccc--ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec-cc
Confidence 222111110 011123667776 33 344 666678889888887753 222223333334445788888887 67
Q ss_pred CEEEEEeCCCeEEEEECCCCCC--Cceeeec---CCCCcEEEEEEeC--CC-CEEE-EEeCCCcEEEEECCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEA--GSSLCDL---PHKRVVNSAYFSP--SG-SKIL-TTSQDNRLRIWDSIF 387 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~~~v~~~~~~p--~~-~~l~-s~s~dg~i~vwd~~~ 387 (546)
..|+.+-.+.-|.-|+...... ...+... .....|-.|++.. ++ .||+ +.-.+++..||+...
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 7888999998888888763221 2223222 2456788888754 33 2444 444578899999753
No 488
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.60 E-value=44 Score=31.59 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=53.8
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeC-C----
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN-F---- 287 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d---- 287 (546)
..+.|+|.|+ +.+|++ ...|.|++++ ..+.....+...... . ......+..++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-~-~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-F-ADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-B-TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccc-c-ccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3578999999 777665 5589999999 444431211111110 0 111125889999994 333433322 1
Q ss_pred ----CcEEEEeCCCCC-C---CcceEEe-ec---CCCcEEEEEECCCCCCEEEEEe
Q 009022 288 ----GFLYLVDARTNS-R---SGEAILI-HR---KGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 288 ----g~i~i~d~~~~~-~---~~~~~~~-~~---~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
..|.-|.+.... . ...++.. .. .......|.|.| ++.+.++.+
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G 132 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVG 132 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeC
Confidence 134444433320 0 1111111 11 122567799999 887666654
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.33 E-value=45 Score=31.47 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=86.3
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCCe------EEEEECCCC----ceee---eeecCCC-CCCCCCcccceEEEEecCCC
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDGT------VSCTDLETG----LALS---LMNVNPN-GWHGPRTWRMLYGMDINPEK 278 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~----~~~~---~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 278 (546)
.-+.+..|.+.|. +..+++.+.+|. +..+.+... ..+. ...+... +..-.....-.-+|++.+++
T Consensus 18 ~~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 3456788888876 667777777777 666665541 1111 1111110 00000011135578887788
Q ss_pred CEEEEEeCC------CcEEEEeCCCCCCCcceE------------EeecCCCcEEEEEECCCCCCEEEEEeC-----CC-
Q 009022 279 GVVLVADNF------GFLYLVDARTNSRSGEAI------------LIHRKGSKVVGLHCNPIQPELLLSCGN-----DH- 334 (546)
Q Consensus 279 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~------------~~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg- 334 (546)
.++++.-.. ..|+.++.. +.....+. .........-+|+++| ++..|+++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCc
Confidence 888887777 788888866 43322220 1112334688999999 8886665542 22
Q ss_pred --------eEEEE--ECCCCC-CCce-eeecC------CCCcEEEEEEeCCCCEEEE
Q 009022 335 --------FARIW--DIRRLE-AGSS-LCDLP------HKRVVNSAYFSPSGSKILT 373 (546)
Q Consensus 335 --------~i~iw--d~~~~~-~~~~-~~~~~------~~~~v~~~~~~p~~~~l~s 373 (546)
.++|+ |..+.. .... ...+. ....|..+.+.+++++|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 14554 443311 1111 22222 3567888999998886664
No 490
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.82 E-value=53 Score=31.94 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=60.6
Q ss_pred ceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc--ceEE--eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 268 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG--EAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
.+.++.+.+++..++++ ..|.+..- ...+.... .... .......+..+.+.+ ++..+++| ..|.+.... ..
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D~ 356 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-DG 356 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-CC
Confidence 47889999998888766 44554432 22221100 1111 111223588898887 66655554 577666553 22
Q ss_pred CCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 344 LEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 344 ~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
++.-..... -.-...++.+.|.++++.+++| .+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 222122211 1234568899998777766665 57766544
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.82 E-value=59 Score=32.97 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-eeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcce
Q 009022 227 DGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA 304 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 304 (546)
+..++.+..+|.+....+..... +........ .....++.+..++ .++++|+.-|.=.++.+.... ...
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~-------~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~--l~~ 292 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTL-------CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN--LEV 292 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE---------S-ESEEEEESTT--EEEEEESSS-EEEEEEESES--EEE
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCc-------CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC--cEE
Confidence 77899999999999888765442 111111100 0124566665554 477777655543333333211 122
Q ss_pred EEeecCCCcEEEEEECCC---CCC------EEEEEe---CCCeEEEEEC
Q 009022 305 ILIHRKGSKVVGLHCNPI---QPE------LLLSCG---NDHFARIWDI 341 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~---~~~------~l~~~~---~dg~i~iwd~ 341 (546)
......-++|..+++.+. ... .|++++ .+|.+++..-
T Consensus 293 ~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 293 LDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp EEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred EEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 233334458999888531 111 444443 4778888753
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.33 E-value=9 Score=22.67 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEec
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYG 210 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 210 (546)
|++.+++++...+++|.++|..+......+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5665566666678899999998877666653
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.13 E-value=90 Score=33.53 Aligned_cols=203 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred EcCCC-CcEEEEEcCCCcEEEEeCCCCceeEEec-cc------CCCceEEEEEe-cCCCCEEEEEeCC---CeEEEEECC
Q 009022 178 FHPTN-NHILLSGDKKGQVGVWDFYKVSEKIVYG-NI------HSCIVNNIRFN-PTNDGTVYAASSD---GTVSCTDLE 245 (546)
Q Consensus 178 ~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~------~~~~v~~~~~~-~~~~~~l~s~~~d---g~i~iwd~~ 245 (546)
++|-. ..-+++-...|.|++|-.+......... .. ....|+..++. .+++..++.++.+ +.|++|.+.
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~ 135 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQ 135 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEE
Q ss_pred CCce-----------eeeeecCCCCCCCCC-------------cccceEEEEecC-------CCCEEEEEeCCC----cE
Q 009022 246 TGLA-----------LSLMNVNPNGWHGPR-------------TWRMLYGMDINP-------EKGVVLVADNFG----FL 290 (546)
Q Consensus 246 ~~~~-----------~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~-------~~~~l~~~~~dg----~i 290 (546)
-.-. ....-.+........ ....++.+.|-+ ....+++..... .|
T Consensus 136 I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI 215 (753)
T PF11635_consen 136 IDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSII 215 (753)
T ss_pred EeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEE
Q ss_pred EEEeCCCCCCCcceEEeecC-----C------------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 009022 291 YLVDARTNSRSGEAILIHRK-----G------------------SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 347 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~-----~------------------~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 347 (546)
.-|.++.............. . ..|.+++... -+.+++....||+|.++|-.+.+..
T Consensus 216 ~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 216 ERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred EEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhh
Q ss_pred cee-----------------eecCCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 348 SSL-----------------CDLPHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 348 ~~~-----------------~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
... ..++.-..+..++|||++..++.-..+|.+.
T Consensus 295 ~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 295 NETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.11 E-value=56 Score=31.12 Aligned_cols=185 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCC-----------CcEEEEeCCCCceeEEecccCCCceEEEEE-ecCCCCEEEEEeCC------------
Q 009022 181 TNNHILLSGDKK-----------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRF-NPTNDGTVYAASSD------------ 236 (546)
Q Consensus 181 ~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~d------------ 236 (546)
++ ++.+.|+.+ ..+..||..+..-...........-..... .-+ +.+++.|+.+
T Consensus 63 ~~-~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~ 140 (346)
T TIGR03547 63 DG-KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN-GQAYFTGGVNKNIFDGYFADLS 140 (346)
T ss_pred CC-EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC-CEEEEEcCcChHHHHHHHhhHh
Q ss_pred ---------------------------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--
Q 009022 237 ---------------------------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-- 287 (546)
Q Consensus 237 ---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 287 (546)
..+.+||..+.+-...-..+... ........-++++++.|+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~--------r~~~~~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 141 AADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLG--------TAGSAIVHKGNKLLLINGEIKP 212 (346)
T ss_pred hcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCc--------CCCceEEEECCEEEEEeeeeCC
Q ss_pred ----CcEEEEeCCCCCCCcceEEeecC------CCcEEEEEECCCCCCEEEEEeCC----------------------Ce
Q 009022 288 ----GFLYLVDARTNSRSGEAILIHRK------GSKVVGLHCNPIQPELLLSCGND----------------------HF 335 (546)
Q Consensus 288 ----g~i~i~d~~~~~~~~~~~~~~~~------~~~i~~~~~~p~~~~~l~~~~~d----------------------g~ 335 (546)
..+..+++............... .......+... ++.+++.|+.+ ..
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS 291 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeE
Q ss_pred EEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 336 ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 336 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
+.+||..+.+-...-...........+.+ ++++++.|+.+.
T Consensus 292 ~e~yd~~~~~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~ 332 (346)
T TIGR03547 292 SEVYALDNGKWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENS 332 (346)
T ss_pred eeEEEecCCcccccCCCCCCceeeEEEEc--CCEEEEEeccCC
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.95 E-value=41 Score=30.83 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe------CCCeEEEEECCCCceeeeeecCCCCCCCCCcccc
Q 009022 195 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 195 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (546)
|++||..+.+-...- .+-.+.|+.+.|..+ ..+++.|. ....+-.||+.+......-........+ +
T Consensus 18 lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg-----p 90 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPG-NGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG-----P 90 (281)
T ss_pred EEEEECCCCEeecCC-CCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC-----c
Q ss_pred eEEEEecCCCCEEEE-----EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 269 LYGMDINPEKGVVLV-----ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 269 v~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
+..+.+......=+. ...+..|..||-............... .|..+.+.|
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t--~I~~l~~~~ 146 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGT--TIRGLQVLP 146 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCC--EEEEEEEEe
No 496
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=79.81 E-value=1.1 Score=49.57 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred ccccccccceeeecccccccCCCcchhccccCCCCCCchhhhhcccccch
Q 009022 4 QTRRMAFPRVVIERDTDTEQSSSEDEEEDREEGPFSESEEEVTENGCEEK 53 (546)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~e~~~~~~eeeeeee~~~~e~~e~~~~~~~~e~ 53 (546)
.+|..++--..+++++++++++++|+|+|++|++----++|+++.+..|+
T Consensus 146 ~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de~~~~~~ge~ 195 (2849)
T PTZ00415 146 SPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195 (2849)
T ss_pred CcccccccCCccccccccccccccccccccccccccCCCchhccCCCCcc
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.04 E-value=2.9 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred eecCCCcEEEEec--C--CcEEEE
Q 009022 469 KLHPRDDVLASGS--S--RSIFIW 488 (546)
Q Consensus 469 ~~s~~~~~l~sgs--d--g~i~vw 488 (546)
+|||||+.|+.++ + |...||
T Consensus 15 ~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 15 AWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EE-TTSSEEEEEEECT--SSEEEE
T ss_pred EEecCCCEEEEEecCCCCCCcCEE
No 498
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.99 E-value=18 Score=37.22 Aligned_cols=91 Identities=18% Similarity=0.041 Sum_probs=0.0
Q ss_pred eeeccccCCCeEEEEEcC---CCCcEEEEEcCCCcEEEEeCC----CCceeEEecccCC---------------------
Q 009022 163 CAVIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFY----KVSEKIVYGNIHS--------------------- 214 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~--------------------- 214 (546)
.............+...- +. ..|+.+..||.+...... .+...........
T Consensus 136 ~~~p~~~~~~~~~~~~~~~~~~~-~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 214 (547)
T PF11715_consen 136 SYVPYSFSFRSPHRLAAVTHDSE-ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSS 214 (547)
T ss_dssp -B-SS-TTTS-EEEEEEE---SS-SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS-
T ss_pred eeeCCCCCccCCCeEEEEEecCC-CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCC
Q ss_pred CceEEEEEec----CCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 215 CIVNNIRFNP----TNDGTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 215 ~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
..+..+++++ + ..+|++.+.|+.|++||+.+++++.....
T Consensus 215 ~~~~~~~~~~~~~~~-~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEIND-DTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ET-TTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCC-CCEEEEEeCCCeEEEEECCCCeEEEEecc
No 499
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.92 E-value=9.9 Score=22.50 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec
Q 009022 224 PTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN 275 (546)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 275 (546)
|++..++++...+++|.++|..++..+..+..... ...+.|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~----------P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY----------PFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC----------CceEEeC
No 500
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=78.86 E-value=33 Score=36.16 Aligned_cols=204 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred cCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEE-------eCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 190 DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-------SSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 190 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
+.|+.+.+|+..+......+......-+.-.-+-|. .+.+++. +....+.++-+........+..-..++..
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPk-antFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~v 177 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPK-ANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVV 177 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccC-CcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEE
Q ss_pred CCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC---------------------CCCcceEEeecCCCcEEEEEECC
Q 009022 263 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN---------------------SRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
......|.|+.-..+|+.+++|-.| +.+|.+.-. ..+........++..|..++...
T Consensus 178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CC--------------------------------CCcEEEEEEeCCC
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH--------------------------------KRVVNSAYFSPSG 368 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--------------------------------~~~v~~~~~~p~~ 368 (546)
...+|.+-+....|+-|.+.......++..- .| ...+.++++...|
T Consensus 256 -sRg~ly~Lr~kS~Vray~itkngl~gpv~i~~a~i~r~a~~lna~sPlL~pr~~kIvkIvsi~~~Enn~lflvaiT~tg 334 (1263)
T COG5308 256 -SRGLLYVLRKKSAVRAYSITKNGLVGPVFISFASIDRNAAILNATSPLLEPRMYKIVKIVSIPAYENNQLFLVAITSTG 334 (1263)
T ss_pred -cccceeeecccceeeeEeeecccccccccccHHHHHhHHhhhccCCcccCCceEEEEEEeecccccccceEEEEEeccc
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
-.+..-+.-|.+.+.+++...+..+...+
T Consensus 335 cRlYf~Gs~gr~si~alkldSvkfpP~S~ 363 (1263)
T COG5308 335 CRLYFDGSRGRVSIVALKLDSVKFPPPST 363 (1263)
T ss_pred eEEEEecCccceeeecccccccccCCchH
Done!