Query 009022
Match_columns 546
No_of_seqs 680 out of 4971
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 17:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 9.9E-44 3.4E-48 347.1 33.7 289 162-491 100-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 7.2E-43 2.5E-47 329.1 34.3 291 161-491 23-320 (321)
3 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-42 3.5E-47 332.0 34.2 314 161-499 6-342 (345)
4 4e54_B DNA damage-binding prot 100.0 3.8E-43 1.3E-47 346.4 31.8 317 164-495 113-433 (435)
5 1got_B GT-beta; complex (GTP-b 100.0 2.5E-42 8.5E-47 328.8 36.2 287 162-489 47-340 (340)
6 2ynn_A Coatomer subunit beta'; 100.0 2.7E-42 9.2E-47 323.1 34.7 292 163-492 6-302 (304)
7 3iz6_a 40S ribosomal protein R 100.0 8.1E-43 2.8E-47 337.4 29.5 315 160-495 56-378 (380)
8 2pbi_B Guanine nucleotide-bind 100.0 1.3E-41 4.6E-46 325.2 36.3 290 162-489 56-354 (354)
9 1nr0_A Actin interacting prote 100.0 3.9E-42 1.3E-46 353.5 33.9 374 104-502 53-579 (611)
10 1nr0_A Actin interacting prote 100.0 1.2E-41 4.2E-46 349.8 37.3 387 61-491 68-610 (611)
11 3frx_A Guanine nucleotide-bind 100.0 1.1E-41 3.6E-46 321.2 33.4 293 161-493 8-318 (319)
12 4ery_A WD repeat-containing pr 100.0 1.3E-40 4.5E-45 313.4 38.7 298 158-491 11-311 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 8.2E-41 2.8E-45 318.9 33.6 295 161-494 12-342 (343)
14 2hes_X YDR267CP; beta-propelle 100.0 1.5E-40 5.3E-45 314.9 34.2 304 160-492 4-328 (330)
15 4g56_B MGC81050 protein; prote 100.0 3.1E-41 1E-45 322.9 27.4 295 167-495 39-346 (357)
16 3ei3_B DNA damage-binding prot 100.0 2.4E-39 8.3E-44 314.1 39.3 314 160-492 63-382 (383)
17 4gqb_B Methylosome protein 50; 100.0 1.3E-40 4.4E-45 315.9 28.3 290 168-494 28-333 (344)
18 4aow_A Guanine nucleotide-bind 100.0 6.3E-40 2.2E-44 312.8 32.7 297 161-494 29-339 (340)
19 1erj_A Transcriptional repress 100.0 3.7E-39 1.3E-43 313.2 33.5 296 167-493 61-390 (393)
20 3dm0_A Maltose-binding peripla 100.0 4.6E-39 1.6E-43 336.3 33.6 293 162-491 374-692 (694)
21 3zwl_B Eukaryotic translation 100.0 1.2E-38 4E-43 307.5 34.0 302 160-500 22-354 (369)
22 2ymu_A WD-40 repeat protein; u 100.0 7.1E-38 2.4E-42 321.0 37.2 360 64-508 192-554 (577)
23 2ymu_A WD-40 repeat protein; u 100.0 4.2E-38 1.4E-42 322.7 35.3 341 64-489 233-577 (577)
24 2ynn_A Coatomer subunit beta'; 100.0 1.5E-37 5.2E-42 290.8 30.5 261 211-506 10-273 (304)
25 1vyh_C Platelet-activating fac 100.0 8.7E-38 3E-42 305.1 29.9 287 105-448 103-410 (410)
26 3i2n_A WD repeat-containing pr 100.0 9.9E-38 3.4E-42 299.7 29.6 303 162-495 10-356 (357)
27 3ow8_A WD repeat-containing pr 100.0 3.6E-37 1.2E-41 290.1 31.4 290 103-448 25-320 (321)
28 4a11_B DNA excision repair pro 100.0 1.4E-36 4.6E-41 297.4 36.4 310 163-504 36-377 (408)
29 4gqb_B Methylosome protein 50; 100.0 8.1E-37 2.8E-41 289.8 31.8 252 166-452 78-334 (344)
30 1gxr_A ESG1, transducin-like e 100.0 1.7E-36 5.9E-41 288.6 33.3 284 164-490 45-335 (337)
31 1k8k_C P40, ARP2/3 complex 41 100.0 7.4E-37 2.5E-41 295.4 30.7 298 165-495 3-364 (372)
32 1sq9_A Antiviral protein SKI8; 100.0 4.6E-37 1.6E-41 299.7 28.6 307 162-494 8-397 (397)
33 2pm9_A Protein WEB1, protein t 100.0 5.9E-37 2E-41 300.9 28.5 295 168-493 65-415 (416)
34 3frx_A Guanine nucleotide-bind 100.0 9.8E-37 3.3E-41 287.3 26.8 301 103-450 10-318 (319)
35 4gga_A P55CDC, cell division c 100.0 1E-35 3.4E-40 292.0 33.6 292 172-502 107-405 (420)
36 1got_B GT-beta; complex (GTP-b 100.0 6.2E-36 2.1E-40 284.6 31.1 288 103-446 48-340 (340)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 6E-36 2.1E-40 285.2 30.4 313 103-456 8-342 (345)
38 1r5m_A SIR4-interacting protei 100.0 3.9E-36 1.3E-40 295.7 29.6 292 167-491 105-424 (425)
39 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-35 5.7E-40 278.7 32.2 295 160-503 8-307 (313)
40 3dwl_C Actin-related protein 2 100.0 8.1E-37 2.8E-41 295.7 23.7 253 165-448 6-280 (377)
41 3k26_A Polycomb protein EED; W 100.0 9.1E-36 3.1E-40 287.0 30.8 306 164-492 12-366 (366)
42 2pm7_B Protein transport prote 100.0 2.5E-35 8.5E-40 274.8 32.0 257 164-491 3-284 (297)
43 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-35 3.7E-40 284.3 30.4 308 164-500 5-345 (351)
44 3gre_A Serine/threonine-protei 100.0 2.9E-36 9.9E-41 297.9 26.4 310 159-489 51-437 (437)
45 2pm9_A Protein WEB1, protein t 100.0 1.8E-36 6.3E-41 297.4 24.6 302 169-499 11-344 (416)
46 3vl1_A 26S proteasome regulato 100.0 3.9E-35 1.3E-39 288.3 32.9 323 115-492 62-419 (420)
47 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6.1E-40 329.9 33.8 356 104-508 651-1132(1249)
48 3v7d_B Cell division control p 100.0 7.8E-35 2.7E-39 290.0 34.6 297 162-505 113-435 (464)
49 1r5m_A SIR4-interacting protei 100.0 1.4E-35 4.7E-40 291.9 28.5 296 167-503 42-392 (425)
50 4aez_A CDC20, WD repeat-contai 100.0 2.7E-35 9.3E-40 287.2 30.3 295 165-500 86-388 (401)
51 3bg1_A Protein SEC13 homolog; 100.0 2.5E-36 8.5E-41 284.1 21.6 256 164-491 7-292 (316)
52 2xzm_R RACK1; ribosome, transl 100.0 1.3E-34 4.6E-39 275.9 33.8 306 104-451 15-342 (343)
53 4ggc_A P55CDC, cell division c 100.0 5.5E-35 1.9E-39 275.8 30.9 283 173-494 28-317 (318)
54 4g56_B MGC81050 protein; prote 100.0 2.2E-35 7.4E-40 282.4 28.2 253 164-451 88-345 (357)
55 4h5i_A Guanine nucleotide-exch 100.0 2.7E-35 9.2E-40 282.5 28.8 296 170-493 14-344 (365)
56 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-35 7.8E-40 329.0 32.6 346 105-497 610-1039(1249)
57 3iz6_a 40S ribosomal protein R 100.0 8.2E-36 2.8E-40 288.3 25.2 310 99-451 55-377 (380)
58 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-35 4.1E-40 295.7 26.7 318 123-492 175-517 (524)
59 2pbi_B Guanine nucleotide-bind 100.0 6.4E-35 2.2E-39 278.9 30.6 289 103-446 57-354 (354)
60 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-34 3.6E-39 309.8 35.0 311 162-510 5-320 (814)
61 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-35 5.1E-40 315.4 27.9 379 62-496 27-609 (902)
62 3dw8_B Serine/threonine-protei 100.0 7.8E-35 2.7E-39 288.6 30.6 300 168-491 26-445 (447)
63 4ery_A WD repeat-containing pr 100.0 4.9E-34 1.7E-38 268.5 33.6 262 211-508 20-284 (312)
64 1yfq_A Cell cycle arrest prote 100.0 3.2E-34 1.1E-38 273.6 32.6 291 164-490 5-322 (342)
65 3vl1_A 26S proteasome regulato 100.0 3.2E-35 1.1E-39 288.9 25.3 285 172-494 58-367 (420)
66 1gxr_A ESG1, transducin-like e 100.0 1.4E-34 4.7E-39 275.4 28.5 298 169-503 8-307 (337)
67 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-34 5.1E-39 307.7 31.8 397 64-503 69-675 (902)
68 1pgu_A Actin interacting prote 100.0 2.4E-34 8.3E-39 297.1 30.7 312 161-508 151-589 (615)
69 1erj_A Transcriptional repress 100.0 6.7E-34 2.3E-38 276.2 31.8 253 169-450 122-390 (393)
70 2hes_X YDR267CP; beta-propelle 100.0 5.8E-34 2E-38 269.7 29.7 299 103-449 7-328 (330)
71 3mmy_A MRNA export factor; mRN 100.0 1.7E-33 5.7E-38 271.3 29.5 299 162-493 31-347 (368)
72 3jrp_A Fusion protein of prote 100.0 1.8E-33 6.3E-38 272.2 29.7 263 162-495 3-290 (379)
73 3v7d_B Cell division control p 100.0 5.4E-33 1.9E-37 276.7 32.2 325 105-489 116-460 (464)
74 1p22_A F-BOX/WD-repeat protein 100.0 1E-32 3.4E-37 272.0 33.4 283 166-501 129-423 (435)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.3E-33 3.2E-37 273.3 33.1 320 105-493 113-443 (445)
76 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-32 6.5E-37 271.0 34.1 282 163-499 111-398 (445)
77 1pgu_A Actin interacting prote 100.0 7.5E-33 2.6E-37 286.0 29.2 300 168-508 16-344 (615)
78 3dm0_A Maltose-binding peripla 100.0 8.5E-33 2.9E-37 288.9 29.2 302 104-448 376-692 (694)
79 4aow_A Guanine nucleotide-bind 100.0 2.1E-32 7.1E-37 260.7 28.7 304 103-451 31-339 (340)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 4.3E-33 1.5E-37 271.8 22.4 289 172-494 36-344 (402)
81 3mkq_A Coatomer beta'-subunit; 100.0 5.2E-32 1.8E-36 289.1 32.3 333 105-493 8-387 (814)
82 3gre_A Serine/threonine-protei 100.0 1.4E-32 4.7E-37 271.5 23.2 291 178-503 35-370 (437)
83 4aez_A CDC20, WD repeat-contai 100.0 2.9E-31 9.8E-36 258.7 31.1 299 103-459 84-390 (401)
84 3k26_A Polycomb protein EED; W 100.0 1.4E-32 4.7E-37 264.8 21.0 304 107-449 15-366 (366)
85 3jro_A Fusion protein of prote 100.0 6.9E-32 2.4E-36 283.4 27.8 261 164-495 3-288 (753)
86 3ei3_B DNA damage-binding prot 100.0 6.8E-31 2.3E-35 254.6 32.2 297 102-449 65-382 (383)
87 1sq9_A Antiviral protein SKI8; 100.0 3E-32 1E-36 265.6 21.8 317 104-451 10-397 (397)
88 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-32 5.5E-37 273.2 20.2 289 185-505 175-485 (524)
89 2pm7_B Protein transport prote 100.0 5.7E-31 2E-35 245.2 28.6 253 105-386 4-284 (297)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-31 1.6E-35 257.5 29.1 279 125-451 51-344 (402)
91 4e54_B DNA damage-binding prot 100.0 1.1E-31 3.7E-36 264.5 24.8 296 107-453 116-434 (435)
92 2xyi_A Probable histone-bindin 100.0 7.4E-31 2.5E-35 258.0 30.4 269 163-493 121-411 (430)
93 3dwl_C Actin-related protein 2 100.0 4.4E-32 1.5E-36 262.4 20.5 255 211-492 8-281 (377)
94 3vu4_A KMHSV2; beta-propeller 100.0 8.6E-31 2.9E-35 250.4 28.6 285 163-495 12-339 (355)
95 3zwl_B Eukaryotic translation 100.0 1.7E-30 5.8E-35 250.4 30.4 304 103-455 25-352 (369)
96 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.8E-31 2E-35 260.6 26.5 294 171-492 5-391 (450)
97 1k8k_C P40, ARP2/3 complex 41 100.0 1E-30 3.6E-35 252.2 26.7 255 211-492 5-274 (372)
98 2j04_A TAU60, YPL007P, hypothe 100.0 6.6E-31 2.3E-35 254.5 24.1 267 168-491 13-296 (588)
99 3odt_A Protein DOA1; ubiquitin 100.0 9.7E-30 3.3E-34 239.2 31.4 262 202-506 6-269 (313)
100 3jrp_A Fusion protein of prote 100.0 5E-30 1.7E-34 248.1 29.9 257 105-388 6-288 (379)
101 3lrv_A PRE-mRNA-splicing facto 100.0 8.5E-31 2.9E-35 249.6 23.5 274 177-491 43-332 (343)
102 3bg1_A Protein SEC13 homolog; 100.0 5.5E-31 1.9E-35 247.6 20.8 253 105-386 8-292 (316)
103 1yfq_A Cell cycle arrest prote 100.0 3.8E-30 1.3E-34 245.3 26.9 259 210-508 7-299 (342)
104 4a11_B DNA excision repair pro 100.0 8.4E-30 2.9E-34 249.1 28.5 342 106-491 39-404 (408)
105 4gga_A P55CDC, cell division c 100.0 2.4E-29 8.1E-34 246.6 30.9 279 124-457 118-403 (420)
106 3dw8_B Serine/threonine-protei 100.0 1.5E-30 5E-35 257.9 22.4 266 212-496 26-377 (447)
107 3i2n_A WD repeat-containing pr 100.0 3.6E-30 1.2E-34 246.9 24.4 261 203-494 7-293 (357)
108 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-30 7.8E-35 250.7 22.6 252 168-481 83-349 (588)
109 1l0q_A Surface layer protein; 100.0 1.9E-28 6.5E-33 238.1 32.6 280 184-505 3-288 (391)
110 4gq1_A NUP37; propeller, trans 100.0 4.6E-30 1.6E-34 249.0 18.4 268 167-491 86-388 (393)
111 3jro_A Fusion protein of prote 100.0 4.8E-29 1.6E-33 261.9 27.0 258 105-389 4-287 (753)
112 3bws_A Protein LP49; two-domai 100.0 2.1E-28 7.3E-33 241.2 29.5 295 164-492 117-432 (433)
113 4h5i_A Guanine nucleotide-exch 100.0 1.3E-28 4.4E-33 236.0 26.8 206 167-388 130-344 (365)
114 1l0q_A Surface layer protein; 100.0 1.9E-27 6.6E-32 231.0 33.9 292 162-495 24-345 (391)
115 4ggc_A P55CDC, cell division c 100.0 1.4E-27 4.9E-32 224.9 31.6 272 124-450 38-316 (318)
116 1p22_A F-BOX/WD-repeat protein 100.0 4.8E-28 1.6E-32 238.6 28.9 274 121-456 143-421 (435)
117 2w18_A PALB2, fancn, partner a 100.0 5.2E-28 1.8E-32 219.9 26.4 281 172-490 41-355 (356)
118 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-28 6.6E-33 233.9 24.8 267 105-390 6-340 (351)
119 3mmy_A MRNA export factor; mRN 100.0 1E-27 3.4E-32 230.8 29.5 276 198-508 24-320 (368)
120 2xyi_A Probable histone-bindin 100.0 3.4E-27 1.1E-31 231.9 29.2 262 106-388 124-411 (430)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-27 9.3E-32 234.2 27.4 266 214-504 4-356 (450)
122 3lrv_A PRE-mRNA-splicing facto 99.9 1.8E-26 6.1E-31 219.7 23.5 231 121-389 48-294 (343)
123 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-25 5.4E-30 213.9 29.5 247 171-451 59-338 (355)
124 4gq1_A NUP37; propeller, trans 99.9 4.3E-27 1.5E-31 228.1 18.3 245 122-385 102-387 (393)
125 1nir_A Nitrite reductase; hemo 99.9 3.4E-25 1.2E-29 222.4 31.3 286 177-496 144-462 (543)
126 2w18_A PALB2, fancn, partner a 99.9 7.6E-26 2.6E-30 205.7 21.5 209 162-385 103-355 (356)
127 3bws_A Protein LP49; two-domai 99.9 5.3E-25 1.8E-29 216.9 29.1 244 165-449 164-432 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.2E-25 7.4E-30 217.3 25.7 298 169-507 61-401 (415)
129 1nir_A Nitrite reductase; hemo 99.9 3.2E-24 1.1E-28 215.3 33.4 322 161-502 170-524 (543)
130 1ri6_A Putative isomerase YBHE 99.9 2.3E-23 7.8E-28 198.3 26.1 284 184-494 6-312 (343)
131 3u4y_A Uncharacterized protein 99.9 2.2E-22 7.5E-27 190.6 32.2 284 176-494 3-306 (331)
132 2ecf_A Dipeptidyl peptidase IV 99.9 4E-23 1.4E-27 217.8 25.2 291 170-500 36-422 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-22 4.6E-27 197.6 26.4 264 164-474 111-409 (415)
134 1pby_B Quinohemoprotein amine 99.9 1.1E-22 3.8E-27 193.0 23.4 281 184-503 2-321 (337)
135 3vgz_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 189.8 27.5 281 169-481 39-332 (353)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1E-21 3.5E-26 205.9 24.5 292 171-494 82-437 (706)
137 2ojh_A Uncharacterized protein 99.9 1.1E-21 3.8E-26 182.3 21.9 256 188-481 17-290 (297)
138 1xfd_A DIP, dipeptidyl aminope 99.9 3.8E-22 1.3E-26 209.9 19.9 291 172-492 18-393 (723)
139 3u4y_A Uncharacterized protein 99.9 2.1E-20 7E-25 176.9 29.3 262 164-451 34-306 (331)
140 3hfq_A Uncharacterized protein 99.9 1.3E-20 4.6E-25 179.5 27.8 279 192-496 15-323 (347)
141 1jmx_B Amine dehydrogenase; ox 99.9 4.5E-21 1.5E-25 182.9 23.8 283 175-502 4-335 (349)
142 1k32_A Tricorn protease; prote 99.9 6.9E-21 2.3E-25 207.6 25.4 300 164-502 46-470 (1045)
143 1ri6_A Putative isomerase YBHE 99.9 2E-20 6.9E-25 177.8 25.7 251 168-451 35-312 (343)
144 2z3z_A Dipeptidyl aminopeptida 99.9 5.4E-21 1.8E-25 200.4 22.2 284 173-494 28-393 (706)
145 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-20 4.5E-25 198.7 22.7 288 172-492 110-459 (741)
146 1k32_A Tricorn protease; prote 99.9 2.4E-20 8E-25 203.4 24.8 288 169-494 294-639 (1045)
147 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-19 4.2E-24 190.7 26.3 309 164-497 51-448 (723)
148 1pby_B Quinohemoprotein amine 99.8 4.7E-20 1.6E-24 174.8 20.5 246 172-459 35-320 (337)
149 3scy_A Hypothetical bacterial 99.8 7.4E-19 2.5E-23 168.4 26.8 284 184-497 14-344 (361)
150 3vgz_A Uncharacterized protein 99.8 6.6E-19 2.3E-23 168.1 25.8 258 213-505 39-316 (353)
151 3o4h_A Acylamino-acid-releasin 99.8 1.1E-19 3.6E-24 186.0 21.4 270 169-492 20-315 (582)
152 2ojh_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 164.8 23.6 208 164-390 35-261 (297)
153 3pe7_A Oligogalacturonate lyas 99.8 1.1E-18 3.9E-23 168.9 25.2 296 162-491 22-381 (388)
154 3hfq_A Uncharacterized protein 99.8 2.2E-18 7.4E-23 164.1 25.8 268 167-453 36-323 (347)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-19 1.2E-23 173.9 18.7 205 171-389 37-280 (434)
156 1z68_A Fibroblast activation p 99.8 5.3E-19 1.8E-23 185.6 19.9 285 175-492 20-391 (719)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.4E-18 1.1E-22 163.8 22.3 285 185-493 4-342 (365)
158 3scy_A Hypothetical bacterial 99.8 2.1E-17 7.2E-22 158.2 27.6 279 169-471 48-360 (361)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 1.8E-18 6E-23 169.0 19.4 205 168-385 90-331 (434)
160 1z68_A Fibroblast activation p 99.8 3.4E-18 1.2E-22 179.5 20.1 308 164-499 50-450 (719)
161 4a5s_A Dipeptidyl peptidase 4 99.8 5.2E-17 1.8E-21 170.5 26.6 275 172-480 18-380 (740)
162 3fvz_A Peptidyl-glycine alpha- 99.8 4.9E-16 1.7E-20 146.3 29.3 261 170-492 23-322 (329)
163 3o4h_A Acylamino-acid-releasin 99.8 7.1E-18 2.4E-22 172.4 17.7 237 213-496 20-278 (582)
164 3c5m_A Oligogalacturonate lyas 99.8 9.7E-18 3.3E-22 162.8 16.0 288 172-494 37-386 (396)
165 3azo_A Aminopeptidase; POP fam 99.8 1.7E-16 5.8E-21 165.0 25.9 300 162-495 15-372 (662)
166 2oiz_A Aromatic amine dehydrog 99.7 2.9E-16 9.9E-21 149.6 23.5 291 191-500 29-344 (361)
167 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-15 6.5E-20 139.4 28.1 199 168-385 27-236 (286)
168 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-16 4.3E-21 152.0 20.7 251 172-459 44-335 (349)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-16 6.8E-21 151.5 20.7 257 170-450 39-342 (365)
170 4a5s_A Dipeptidyl peptidase 4 99.7 2.7E-16 9.2E-21 165.1 22.4 258 215-498 17-359 (740)
171 2dg1_A DRP35, lactonase; beta 99.7 3.8E-15 1.3E-19 140.8 21.8 275 172-481 7-298 (333)
172 3pe7_A Oligogalacturonate lyas 99.7 6.6E-15 2.3E-19 142.3 22.8 264 197-495 14-332 (388)
173 2z2n_A Virginiamycin B lyase; 99.7 4.3E-13 1.5E-17 124.4 33.9 287 166-494 10-297 (299)
174 3e5z_A Putative gluconolactona 99.7 4.5E-14 1.5E-18 130.9 27.1 204 164-386 21-245 (296)
175 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4.1E-18 138.1 31.2 283 180-493 165-478 (567)
176 2oiz_A Aromatic amine dehydrog 99.7 1E-14 3.5E-19 138.9 22.3 268 165-475 46-360 (361)
177 2xdw_A Prolyl endopeptidase; a 99.7 3E-14 1E-18 148.8 27.0 205 168-385 122-366 (710)
178 3azo_A Aminopeptidase; POP fam 99.6 1.8E-14 6.2E-19 149.7 23.6 199 175-389 81-327 (662)
179 3dsm_A Uncharacterized protein 99.6 1E-13 3.4E-18 130.3 23.5 271 191-502 15-311 (328)
180 1qks_A Cytochrome CD1 nitrite 99.6 3.3E-12 1.1E-16 127.7 35.5 312 171-501 197-547 (567)
181 2bkl_A Prolyl endopeptidase; m 99.6 1E-13 3.4E-18 144.5 24.4 202 168-385 118-347 (695)
182 2gop_A Trilobed protease; beta 99.6 9.7E-14 3.3E-18 131.9 22.3 258 171-491 15-330 (347)
183 3no2_A Uncharacterized protein 99.6 2.9E-13 1E-17 123.2 24.1 188 184-390 6-198 (276)
184 1rwi_B Serine/threonine-protei 99.6 5.5E-13 1.9E-17 121.7 24.7 196 172-386 25-221 (270)
185 1q7f_A NHL, brain tumor CG1071 99.6 1.7E-12 5.8E-17 119.6 27.0 204 168-387 74-280 (286)
186 2qc5_A Streptogramin B lactona 99.6 1.5E-11 5.1E-16 113.9 33.5 281 168-490 17-298 (300)
187 3c5m_A Oligogalacturonate lyas 99.6 5.2E-14 1.8E-18 136.3 17.1 196 174-390 84-332 (396)
188 2mad_H Methylamine dehydrogena 99.6 5.1E-12 1.8E-16 120.2 28.8 294 178-499 28-357 (373)
189 2dg1_A DRP35, lactonase; beta 99.5 1.4E-11 4.7E-16 116.2 31.6 208 164-386 38-262 (333)
190 3dsm_A Uncharacterized protein 99.5 3E-12 1E-16 120.1 25.8 249 172-457 45-309 (328)
191 3sjl_D Methylamine dehydrogena 99.5 5.2E-12 1.8E-16 118.3 24.3 304 176-503 38-374 (386)
192 3fvz_A Peptidyl-glycine alpha- 99.5 1.2E-11 4E-16 116.3 26.6 215 168-387 88-322 (329)
193 3c75_H MADH, methylamine dehyd 99.5 2.7E-12 9.3E-17 122.5 20.3 298 180-499 82-409 (426)
194 1yr2_A Prolyl oligopeptidase; 99.5 4.1E-12 1.4E-16 133.3 21.5 280 179-494 115-443 (741)
195 2xdw_A Prolyl endopeptidase; a 99.4 2.9E-11 9.8E-16 126.3 27.2 161 213-387 123-320 (710)
196 2gop_A Trilobed protease; beta 99.4 1.2E-11 4E-16 117.4 22.2 183 171-388 59-292 (347)
197 2z2n_A Virginiamycin B lyase; 99.4 2.1E-10 7.2E-15 106.0 28.7 244 212-494 12-256 (299)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 9.9E-11 3.4E-15 109.2 26.1 208 167-388 14-257 (314)
199 1rwi_B Serine/threonine-protei 99.4 4.7E-11 1.6E-15 108.8 22.9 201 170-389 66-266 (270)
200 1xip_A Nucleoporin NUP159; bet 99.4 2.7E-12 9.1E-17 120.8 14.3 175 172-375 39-232 (388)
201 3e5z_A Putative gluconolactona 99.4 1.2E-10 4.1E-15 107.7 24.7 204 164-390 62-289 (296)
202 3hrp_A Uncharacterized protein 99.4 3.7E-10 1.3E-14 109.0 28.1 204 171-390 131-357 (409)
203 1yr2_A Prolyl oligopeptidase; 99.4 8.1E-11 2.8E-15 123.4 25.3 253 168-451 160-443 (741)
204 3iuj_A Prolyl endopeptidase; h 99.3 2.1E-10 7.2E-15 119.1 22.7 204 168-386 126-358 (693)
205 1yiq_A Quinohemoprotein alcoho 99.3 4.2E-10 1.4E-14 116.0 24.4 302 185-502 72-515 (689)
206 2bkl_A Prolyl endopeptidase; m 99.3 1.6E-10 5.5E-15 120.3 21.5 208 268-501 122-359 (695)
207 3g4e_A Regucalcin; six bladed 99.3 4.9E-09 1.7E-13 96.7 28.8 206 168-390 10-232 (297)
208 2qc5_A Streptogramin B lactona 99.3 9.7E-09 3.3E-13 94.8 31.0 199 169-385 60-258 (300)
209 3hrp_A Uncharacterized protein 99.3 6.6E-10 2.3E-14 107.2 23.6 243 215-490 131-408 (409)
210 3no2_A Uncharacterized protein 99.3 1.5E-09 5.2E-14 98.6 24.6 197 164-375 29-231 (276)
211 2mad_H Methylamine dehydrogena 99.3 3.9E-09 1.3E-13 100.3 27.5 242 175-456 70-357 (373)
212 3sjl_D Methylamine dehydrogena 99.3 5.8E-10 2E-14 104.5 21.1 250 175-459 82-373 (386)
213 3dr2_A Exported gluconolactona 99.2 1.5E-09 5.1E-14 100.7 22.2 235 213-489 43-303 (305)
214 1kb0_A Quinohemoprotein alcoho 99.2 1E-09 3.5E-14 112.9 22.6 305 185-503 79-518 (677)
215 2ghs_A AGR_C_1268P; regucalcin 99.2 1.5E-08 5.1E-13 94.8 28.6 196 172-385 50-258 (326)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5E-09 1.7E-13 97.6 24.3 201 169-387 69-299 (314)
217 1mda_H Methylamine dehydrogena 99.2 3.1E-10 1.1E-14 106.6 15.7 285 184-504 33-358 (368)
218 2qe8_A Uncharacterized protein 99.2 5.1E-10 1.7E-14 105.7 17.4 279 171-489 17-318 (343)
219 1yiq_A Quinohemoprotein alcoho 99.2 2.8E-09 9.7E-14 109.8 22.2 270 185-479 123-534 (689)
220 3dr2_A Exported gluconolactona 99.1 9.4E-09 3.2E-13 95.2 22.3 204 164-386 38-266 (305)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.4E-08 1.1E-12 94.6 26.7 274 185-501 55-346 (376)
222 1xip_A Nucleoporin NUP159; bet 99.1 1.4E-09 4.8E-14 102.4 15.6 137 168-329 86-230 (388)
223 3c75_H MADH, methylamine dehyd 99.1 4.3E-09 1.5E-13 100.5 18.5 245 175-456 122-409 (426)
224 1kb0_A Quinohemoprotein alcoho 99.1 1E-08 3.4E-13 105.6 21.9 270 185-479 130-536 (677)
225 3g4e_A Regucalcin; six bladed 99.1 3.2E-08 1.1E-12 91.2 22.9 190 169-376 52-261 (297)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.2E-07 4.2E-12 90.7 27.3 265 185-489 105-375 (376)
227 1kv9_A Type II quinohemoprotei 99.1 6.1E-08 2.1E-12 99.6 26.3 305 185-503 68-499 (668)
228 1fwx_A Nitrous oxide reductase 99.0 6.8E-09 2.3E-13 101.4 17.8 240 225-494 100-433 (595)
229 2ghs_A AGR_C_1268P; regucalcin 99.0 2.5E-07 8.6E-12 86.4 26.6 187 170-377 89-292 (326)
230 2ece_A 462AA long hypothetical 99.0 2.7E-08 9.3E-13 93.8 18.6 157 224-386 93-288 (462)
231 2iwa_A Glutamine cyclotransfer 99.0 3.5E-07 1.2E-11 81.0 24.6 203 169-388 17-238 (266)
232 2qe8_A Uncharacterized protein 99.0 4.8E-08 1.6E-12 92.1 19.4 213 168-383 64-317 (343)
233 2hz6_A Endoplasmic reticulum t 98.9 2.6E-10 9E-15 108.6 3.2 182 184-390 10-195 (369)
234 1fwx_A Nitrous oxide reductase 98.9 1.1E-07 3.8E-12 92.9 20.5 193 180-387 99-361 (595)
235 2ece_A 462AA long hypothetical 98.9 2.7E-07 9.3E-12 87.0 22.3 201 177-387 88-352 (462)
236 3nol_A Glutamine cyclotransfer 98.9 2.3E-07 7.9E-12 81.0 19.7 190 168-376 38-244 (262)
237 3qqz_A Putative uncharacterize 98.9 2.6E-06 9E-11 75.0 26.3 215 164-385 20-251 (255)
238 2hz6_A Endoplasmic reticulum t 98.9 7.3E-10 2.5E-14 105.5 3.7 143 227-390 9-152 (369)
239 3iuj_A Prolyl endopeptidase; h 98.8 2.1E-07 7.3E-12 96.5 21.5 161 212-387 126-314 (693)
240 1npe_A Nidogen, entactin; glyc 98.8 6.4E-06 2.2E-10 74.3 28.8 202 171-390 36-241 (267)
241 3nok_A Glutaminyl cyclase; bet 98.8 5E-07 1.7E-11 78.8 20.0 183 172-374 56-253 (268)
242 1npe_A Nidogen, entactin; glyc 98.8 3.1E-06 1.1E-10 76.4 25.8 252 185-475 3-263 (267)
243 3mbr_X Glutamine cyclotransfer 98.8 2.2E-06 7.4E-11 74.3 22.3 189 168-375 16-222 (243)
244 3hxj_A Pyrrolo-quinoline quino 98.8 5.1E-07 1.7E-11 84.5 19.0 268 169-493 58-325 (330)
245 1mda_H Methylamine dehydrogena 98.7 4.7E-07 1.6E-11 85.0 18.1 215 164-390 60-349 (368)
246 1w6s_A Methanol dehydrogenase 98.7 7E-06 2.4E-10 82.5 27.3 306 185-503 64-514 (599)
247 2iwa_A Glutamine cyclotransfer 98.7 5E-06 1.7E-10 73.6 22.9 157 216-390 22-184 (266)
248 2ad6_A Methanol dehydrogenase 98.7 3.6E-06 1.2E-10 84.6 24.5 303 185-503 64-505 (571)
249 1flg_A Protein (quinoprotein e 98.7 7.8E-06 2.7E-10 82.3 26.8 306 186-504 71-528 (582)
250 3hxj_A Pyrrolo-quinoline quino 98.7 9.9E-08 3.4E-12 89.4 11.2 268 175-501 24-292 (330)
251 2ad6_A Methanol dehydrogenase 98.7 2.3E-06 7.7E-11 86.1 21.5 267 185-479 117-523 (571)
252 1kv9_A Type II quinohemoprotei 98.7 1.4E-06 4.9E-11 89.5 20.2 269 185-479 119-518 (668)
253 2fp8_A Strictosidine synthase; 98.7 2.2E-05 7.4E-10 73.1 26.6 190 171-375 19-247 (322)
254 3nol_A Glutamine cyclotransfer 98.6 6.3E-06 2.1E-10 72.0 20.2 155 216-390 44-204 (262)
255 1k3i_A Galactose oxidase precu 98.6 4.8E-06 1.6E-10 85.7 21.4 277 175-481 190-529 (656)
256 1w6s_A Methanol dehydrogenase 98.6 1.4E-05 4.9E-10 80.2 23.4 155 186-346 124-345 (599)
257 4a2l_A BT_4663, two-component 98.5 0.00015 5.3E-09 76.5 32.1 294 170-494 214-528 (795)
258 3nok_A Glutaminyl cyclase; bet 98.5 2.1E-05 7.2E-10 68.7 20.1 155 216-390 56-213 (268)
259 1flg_A Protein (quinoprotein e 98.5 1.6E-05 5.6E-10 79.9 22.6 280 185-488 119-557 (582)
260 4a2l_A BT_4663, two-component 98.5 0.00018 6.2E-09 76.0 30.7 294 170-493 309-615 (795)
261 3v65_B Low-density lipoprotein 98.4 0.0003 1E-08 66.9 28.6 197 172-387 78-277 (386)
262 3v64_C Agrin; beta propeller, 98.4 0.00057 1.9E-08 64.0 30.0 200 169-387 32-234 (349)
263 1ijq_A LDL receptor, low-densi 98.4 0.00051 1.7E-08 63.4 28.9 207 170-390 29-241 (316)
264 4hw6_A Hypothetical protein, I 98.4 7.7E-05 2.6E-09 72.1 24.1 157 216-386 140-303 (433)
265 3qqz_A Putative uncharacterize 98.4 0.00023 7.9E-09 62.6 24.2 166 211-386 23-203 (255)
266 3kya_A Putative phosphatase; s 98.4 0.00014 4.9E-09 70.4 24.7 161 216-385 140-339 (496)
267 2p4o_A Hypothetical protein; p 98.4 0.00017 5.8E-09 66.4 24.6 197 171-386 32-241 (306)
268 3v9f_A Two-component system se 98.4 0.00032 1.1E-08 73.8 29.5 293 170-494 257-570 (781)
269 3p5b_L Low density lipoprotein 98.4 0.001 3.6E-08 63.5 30.2 207 169-390 110-323 (400)
270 2xe4_A Oligopeptidase B; hydro 98.4 5.2E-05 1.8E-09 79.2 22.8 197 172-385 175-398 (751)
271 2fp8_A Strictosidine synthase; 98.4 0.00015 5.2E-09 67.3 23.8 196 171-387 80-313 (322)
272 3v65_B Low-density lipoprotein 98.3 0.00056 1.9E-08 65.1 27.9 205 170-390 115-321 (386)
273 3v64_C Agrin; beta propeller, 98.3 0.0011 3.8E-08 62.0 29.4 204 171-390 73-278 (349)
274 3mbr_X Glutamine cyclotransfer 98.3 0.00046 1.6E-08 59.7 24.0 157 215-390 21-182 (243)
275 2p4o_A Hypothetical protein; p 98.3 0.00066 2.3E-08 62.3 26.2 227 215-481 32-276 (306)
276 2xe4_A Oligopeptidase B; hydro 98.3 0.00015 5E-09 75.8 24.1 159 216-387 175-354 (751)
277 3tc9_A Hypothetical hydrolase; 98.3 0.00012 4.3E-09 70.6 21.4 155 216-386 138-300 (430)
278 3p5b_L Low density lipoprotein 98.2 0.0027 9.2E-08 60.6 29.2 178 193-387 92-277 (400)
279 1ijq_A LDL receptor, low-densi 98.2 0.0042 1.4E-07 57.2 29.4 180 193-387 10-195 (316)
280 3sov_A LRP-6, low-density lipo 98.2 0.0019 6.5E-08 59.4 26.4 205 171-390 35-241 (318)
281 3v9f_A Two-component system se 98.2 0.0088 3E-07 62.9 34.7 298 171-494 115-438 (781)
282 3m0c_C LDL receptor, low-densi 98.1 0.0026 8.9E-08 66.0 28.7 208 169-390 422-635 (791)
283 4hw6_A Hypothetical protein, I 98.1 0.00063 2.1E-08 65.7 22.4 198 172-385 140-372 (433)
284 3sov_A LRP-6, low-density lipo 98.0 0.0032 1.1E-07 57.9 25.1 231 192-458 12-247 (318)
285 3amr_A 3-phytase; beta-propell 98.0 0.0044 1.5E-07 56.6 24.4 195 184-386 41-262 (355)
286 2p9w_A MAL S 1 allergenic prot 98.0 0.0019 6.6E-08 58.4 21.8 168 173-343 15-215 (334)
287 3m0c_C LDL receptor, low-densi 98.0 0.0088 3E-07 62.1 29.7 196 173-387 387-589 (791)
288 3kya_A Putative phosphatase; s 97.9 0.0026 8.8E-08 61.6 23.2 205 172-389 140-411 (496)
289 1n7d_A LDL receptor, low-densi 97.9 7.6E-05 2.6E-09 76.9 13.0 205 171-390 406-617 (699)
290 3s94_A LRP-6, low-density lipo 97.9 0.025 8.5E-07 57.2 31.1 205 170-390 39-246 (619)
291 1k3i_A Galactose oxidase precu 97.9 0.00015 5E-09 74.7 14.0 208 172-389 244-499 (656)
292 1n7d_A LDL receptor, low-densi 97.8 0.00031 1.1E-08 72.4 15.4 231 192-457 385-622 (699)
293 3ei3_A DNA damage-binding prot 97.8 0.04 1.4E-06 59.9 31.7 190 170-375 553-755 (1158)
294 2p9w_A MAL S 1 allergenic prot 97.8 0.0017 5.7E-08 58.8 17.6 168 213-386 11-214 (334)
295 3amr_A 3-phytase; beta-propell 97.8 0.0022 7.6E-08 58.6 18.5 147 227-385 40-208 (355)
296 4a0p_A LRP6, LRP-6, low-densit 97.8 0.033 1.1E-06 56.4 29.0 183 191-388 13-198 (628)
297 4a0p_A LRP6, LRP-6, low-densit 97.7 0.04 1.4E-06 55.8 29.0 200 171-389 37-239 (628)
298 2xzh_A Clathrin heavy chain 1; 97.7 0.024 8.2E-07 50.9 24.9 174 192-387 48-236 (365)
299 3tc9_A Hypothetical hydrolase; 97.7 0.0088 3E-07 57.7 23.0 203 169-385 177-428 (430)
300 2xbg_A YCF48-like protein; pho 97.6 0.018 6.1E-07 53.2 23.2 196 171-385 122-320 (327)
301 2xbg_A YCF48-like protein; pho 97.5 0.059 2E-06 49.7 31.2 279 171-490 36-320 (327)
302 3sre_A PON1, serum paraoxonase 97.4 0.09 3.1E-06 48.6 23.6 199 165-377 44-287 (355)
303 1bpo_A Protein (clathrin); cla 97.4 0.1 3.4E-06 48.9 25.7 268 192-495 47-334 (494)
304 2ism_A Putative oxidoreductase 97.3 0.09 3.1E-06 49.0 24.0 205 170-387 30-297 (352)
305 3s94_A LRP-6, low-density lipo 97.1 0.32 1.1E-05 49.2 27.1 199 171-388 349-552 (619)
306 2ism_A Putative oxidoreductase 97.0 0.15 5.1E-06 47.5 21.9 153 216-378 32-224 (352)
307 3a9g_A Putative uncharacterize 96.9 0.21 7E-06 46.6 21.7 151 215-375 29-216 (354)
308 3ei3_A DNA damage-binding prot 96.8 0.094 3.2E-06 57.0 21.0 192 178-384 839-1059(1158)
309 3pbp_A Nucleoporin NUP82; beta 96.8 0.37 1.3E-05 45.2 21.6 150 227-383 32-208 (452)
310 3a9g_A Putative uncharacterize 96.7 0.41 1.4E-05 44.5 23.0 151 169-330 27-215 (354)
311 2vpj_A Kelch-like protein 12; 96.7 0.068 2.3E-06 48.5 16.2 189 184-389 16-233 (301)
312 1tl2_A L10, protein (tachylect 96.6 0.027 9.1E-07 47.5 11.7 151 172-336 42-203 (236)
313 1tl2_A L10, protein (tachylect 96.6 0.21 7.3E-06 42.1 16.9 187 184-385 5-206 (236)
314 3ii7_A Kelch-like protein 7; p 96.5 0.14 5E-06 46.4 17.3 189 184-389 13-227 (306)
315 2vpj_A Kelch-like protein 12; 96.5 0.16 5.3E-06 46.1 17.2 188 184-388 64-279 (301)
316 2g8s_A Glucose/sorbosone dehyd 96.4 0.6 2E-05 43.4 23.2 161 162-329 9-214 (353)
317 3sbq_A Nitrous-oxide reductase 96.4 0.81 2.8E-05 44.4 21.7 239 185-450 72-409 (638)
318 1xi4_A Clathrin heavy chain; a 96.3 0.45 1.5E-05 51.8 21.3 232 192-457 47-297 (1630)
319 2xn4_A Kelch-like protein 2; s 96.3 0.29 9.9E-06 44.3 18.2 189 184-389 17-231 (302)
320 2xn4_A Kelch-like protein 2; s 96.3 0.17 5.7E-06 45.9 16.3 191 181-389 61-278 (302)
321 1cru_A Protein (soluble quinop 96.3 0.69 2.4E-05 44.6 21.1 115 164-285 20-162 (454)
322 3pbp_A Nucleoporin NUP82; beta 96.3 0.77 2.6E-05 43.0 20.5 153 179-339 29-208 (452)
323 3ii7_A Kelch-like protein 7; p 96.2 0.18 6.1E-06 45.8 16.1 190 181-389 55-274 (306)
324 1zgk_A Kelch-like ECH-associat 96.0 0.23 8E-06 45.1 15.9 189 184-389 26-242 (308)
325 1bpo_A Protein (clathrin); cla 96.0 1.1 3.7E-05 42.2 26.9 200 176-391 71-293 (494)
326 2g8s_A Glucose/sorbosone dehyd 95.8 1.2 4.1E-05 41.3 22.4 152 216-373 19-214 (353)
327 2woz_A Kelch repeat and BTB do 95.8 0.65 2.2E-05 42.3 17.9 188 184-389 17-233 (318)
328 4asc_A Kelch repeat and BTB do 95.8 0.64 2.2E-05 42.3 17.7 188 184-389 6-223 (315)
329 3ott_A Two-component system se 95.7 2.4 8.1E-05 44.1 25.4 197 170-389 21-222 (758)
330 3sre_A PON1, serum paraoxonase 95.7 0.73 2.5E-05 42.6 17.5 143 235-386 81-251 (355)
331 2xzh_A Clathrin heavy chain 1; 95.6 1.2 4.1E-05 40.2 27.8 199 177-391 73-294 (365)
332 4asc_A Kelch repeat and BTB do 95.5 0.53 1.8E-05 42.8 16.1 192 180-389 44-279 (315)
333 2be1_A Serine/threonine-protei 95.4 0.033 1.1E-06 51.1 7.4 110 227-346 10-133 (339)
334 1zgk_A Kelch-like ECH-associat 95.3 0.41 1.4E-05 43.4 14.6 188 184-388 72-288 (308)
335 2woz_A Kelch repeat and BTB do 95.3 1.2 4.2E-05 40.5 17.8 192 180-389 55-289 (318)
336 3das_A Putative oxidoreductase 95.2 1.8 6.2E-05 39.7 24.1 154 215-374 32-219 (347)
337 2be1_A Serine/threonine-protei 95.2 0.034 1.2E-06 50.9 6.6 200 184-390 11-234 (339)
338 1xi4_A Clathrin heavy chain; a 95.1 0.79 2.7E-05 50.0 17.2 199 178-392 73-294 (1630)
339 2uvk_A YJHT; unknown function, 95.0 0.9 3.1E-05 42.2 16.4 96 181-287 19-128 (357)
340 1cru_A Protein (soluble quinop 95.0 1.4 4.8E-05 42.5 17.9 168 216-387 28-259 (454)
341 2zwa_A Leucine carboxyl methyl 94.9 0.8 2.7E-05 47.1 16.7 197 184-389 399-637 (695)
342 2uvk_A YJHT; unknown function, 94.5 0.78 2.7E-05 42.6 14.4 140 237-390 168-345 (357)
343 2zwa_A Leucine carboxyl methyl 92.9 2.1 7.2E-05 43.9 15.4 156 181-344 451-636 (695)
344 3ott_A Two-component system se 92.4 11 0.00039 39.0 31.1 201 172-390 192-404 (758)
345 3das_A Putative oxidoreductase 91.0 9.4 0.00032 35.0 30.2 214 165-388 26-293 (347)
346 3sbq_A Nitrous-oxide reductase 89.4 3 0.0001 40.6 11.1 77 170-247 322-409 (638)
347 3q6k_A 43.2 kDa salivary prote 89.2 14 0.00048 34.3 16.5 146 238-387 124-306 (381)
348 3s25_A Hypothetical 7-bladed b 86.3 18 0.00062 32.4 15.8 172 180-387 23-216 (302)
349 2wg3_C Hedgehog-interacting pr 85.7 16 0.00056 35.0 14.2 109 268-377 15-159 (463)
350 3b7f_A Glycosyl hydrolase, BNR 85.3 24 0.00082 32.9 20.2 152 216-374 116-296 (394)
351 2wg3_C Hedgehog-interacting pr 83.3 17 0.00057 35.0 13.0 111 171-287 14-159 (463)
352 3b7f_A Glycosyl hydrolase, BNR 82.0 33 0.0011 31.9 20.8 193 185-383 24-258 (394)
353 3q6k_A 43.2 kDa salivary prote 80.6 36 0.0012 31.5 26.4 204 170-373 86-340 (381)
354 4gq2_M Nucleoporin NUP120; bet 80.4 46 0.0016 35.5 16.2 40 216-256 237-276 (950)
355 4hvt_A Ritya.17583.B, post-pro 79.9 57 0.0019 33.4 20.1 161 222-388 137-330 (711)
356 4gq2_M Nucleoporin NUP120; bet 79.3 13 0.00044 39.6 11.6 35 357-391 236-270 (950)
357 3qhy_B Beta-lactamase inhibito 79.1 33 0.0011 30.2 18.2 181 172-386 64-245 (282)
358 3qhy_B Beta-lactamase inhibito 75.6 42 0.0014 29.6 17.2 183 172-387 25-207 (282)
359 3uc1_A DNA gyrase subunit A; D 73.7 52 0.0018 29.7 21.1 161 171-342 95-278 (327)
360 3s25_A Hypothetical 7-bladed b 73.4 50 0.0017 29.4 17.5 175 176-386 58-254 (302)
361 1sqj_A OXG-RCBH, oligoxylogluc 72.5 95 0.0032 32.2 23.2 161 170-333 14-190 (789)
362 1sqj_A OXG-RCBH, oligoxylogluc 71.6 99 0.0034 32.1 16.0 159 214-377 14-190 (789)
363 2cn3_A Xyloglucanase, beta-1,4 71.6 96 0.0033 31.9 20.9 114 172-287 24-153 (737)
364 1suu_A DNA gyrase subunit A; t 64.2 80 0.0028 28.2 23.4 196 180-387 6-231 (312)
365 3f7f_A Nucleoporin NUP120; nuc 59.6 20 0.00068 36.3 7.1 33 357-391 222-254 (729)
366 4fhn_B Nucleoporin NUP120; pro 58.9 35 0.0012 37.3 9.7 40 216-256 239-278 (1139)
367 3a0f_A Xyloglucanase; beta-pro 57.8 1.8E+02 0.006 30.1 22.0 163 169-334 19-203 (763)
368 3l6v_A GYRA, DNA gyrase subuni 57.1 1.2E+02 0.0041 27.9 24.3 155 223-387 4-180 (370)
369 1suu_A DNA gyrase subunit A; t 55.6 1.1E+02 0.0039 27.2 24.9 154 224-387 6-181 (312)
370 3kci_A Probable E3 ubiquitin-p 53.0 1.4E+02 0.0049 27.5 25.2 161 216-387 54-241 (389)
371 3zwu_A Alkaline phosphatase PH 51.8 55 0.0019 32.4 8.9 59 217-284 478-548 (592)
372 3f7f_A Nucleoporin NUP120; nuc 50.8 67 0.0023 32.6 9.3 38 216-256 223-260 (729)
373 2cn3_A Xyloglucanase, beta-1,4 50.0 2.3E+02 0.0078 29.0 17.0 115 216-333 24-153 (737)
374 3no0_A DNA gyrase subunit A; D 48.7 1.4E+02 0.0047 26.1 19.6 161 170-342 67-245 (276)
375 1zi0_A DNA gyrase subunit A; b 48.0 1.5E+02 0.0051 26.4 23.6 246 224-492 1-277 (307)
376 3zwu_A Alkaline phosphatase PH 47.7 65 0.0022 31.9 8.6 60 172-233 477-548 (592)
377 4a9v_A PHOX; hydrolase, beta-p 46.4 1.1E+02 0.0036 30.2 9.6 61 216-285 477-549 (592)
378 4fhn_B Nucleoporin NUP120; pro 45.9 18 0.00062 39.5 4.8 38 463-501 239-277 (1139)
379 3no0_A DNA gyrase subunit A; D 42.8 1.7E+02 0.0058 25.5 25.3 203 171-387 24-246 (276)
380 4hvt_A Ritya.17583.B, post-pro 42.3 2.9E+02 0.01 28.1 19.7 201 173-388 131-382 (711)
381 1xks_A Nuclear pore complex pr 41.8 2.3E+02 0.008 26.8 20.3 158 220-388 43-238 (450)
382 1wp5_A Topoisomerase IV; broke 41.8 1.9E+02 0.0066 25.9 21.3 196 180-387 3-225 (323)
383 4a9v_A PHOX; hydrolase, beta-p 37.6 1.5E+02 0.0053 29.1 9.3 61 171-233 476-548 (592)
384 3uc1_A DNA gyrase subunit A; D 37.3 2.3E+02 0.0079 25.4 28.2 164 214-387 94-279 (327)
385 3a0f_A Xyloglucanase; beta-pro 36.7 3.7E+02 0.013 27.6 18.7 164 212-378 18-203 (763)
386 3kci_A Probable E3 ubiquitin-p 28.4 3.5E+02 0.012 24.8 25.9 204 172-387 106-345 (389)
387 1zvt_A Topoisomerase IV subuni 27.3 3E+02 0.01 23.6 15.7 149 228-387 3-163 (256)
388 1q47_A Semaphorin 3A; beta pro 22.5 2.5E+02 0.0086 27.0 7.9 70 313-382 405-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-44 Score=347.15 Aligned_cols=289 Identities=18% Similarity=0.279 Sum_probs=247.4
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
....+.+|.++|++++|+|++ .+|++|+.||+|+|||+.++.....+ .+|...|.+++|+|+ +.+|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS-GKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Confidence 346788999999999999999 69999999999999999998888777 789999999999999 999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
||+.+++.+..+..+.. .|.+++|+|++.+|++|+.|+.|++||++++.... .+..|...|.++.++|
T Consensus 177 wd~~~~~~~~~~~~h~~---------~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDH---------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK---TFTGHREWVRMVRPNQ 244 (410)
T ss_dssp EETTSSCEEECCCCCSS---------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECT
T ss_pred EeCCCCceeEEEcCCCC---------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeCCCccEEEEEECC
Confidence 99999988877755443 59999999999999999999999999999876433 3456677899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC--------------------CCEEEEEeCCCcEE
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS--------------------GSKILTTSQDNRLR 381 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~l~s~s~dg~i~ 381 (546)
++.+|++|+.|+.|++||+++.... ....+|...|.+++|+|+ +.+|++|+.|+.|+
T Consensus 245 -~g~~l~s~s~D~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 245 -DGTLIASCSNDQTVRVWVVATKECK--AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp -TSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcee--eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 9999999999999999999865432 222379999999999996 67899999999999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
+||+.++.+.. .+.++. ....+.|+|+ |.+++ +|+.|+.|+|||+.+++++..+.+|.
T Consensus 322 iwd~~~~~~~~---------~~~~h~~~v~~v~~~~~---------g~~l~---s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 322 MWDVSTGMCLM---------TLVGHDNWVRGVLFHSG---------GKFIL---SCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp EEETTTTEEEE---------EEECCSSCEEEEEECSS---------SSCEE---EEETTTEEEEECCTTSCCCEEEECCS
T ss_pred EEECCCCceEE---------EEECCCCcEEEEEEcCC---------CCEEE---EEeCCCeEEEEECCCCceEEEEcCCC
Confidence 99998876421 111222 2347889998 77777 78999999999999999999888776
Q ss_pred CCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 461 ITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 461 ~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
..+.++ +|+|++.+|++|+ ||+|+||+++
T Consensus 381 -~~v~~l-~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 381 -HFVTSL-DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -SCEEEE-EECSSSSCEEEEETTSEEEEEC--
T ss_pred -CcEEEE-EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 678888 9999999999999 9999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.2e-43 Score=329.06 Aligned_cols=291 Identities=17% Similarity=0.258 Sum_probs=243.1
Q ss_pred eeeeeccccCCCeEEEEEcCCC---CcEEEEEcCCCcEEEEeCCCCceeE-EecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTN---NHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
...+.+.+|.+.|++++|+|++ ..+|+||+.|++|+||++....... ....+|...|.+++|+|+ +.++++++.|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D 101 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAASSSLD 101 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEEEETT
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEEEeCC
Confidence 3446778999999999999852 2589999999999999998765432 223789999999999999 9999999999
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.+|.|++|++.++.... ....+...|.+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~---------~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~---~~~~~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPV---------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY---SLDTRGKFILS 169 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTT---------CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE---EEECSSSCEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCc---------cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE---EecCCCceEEE
Confidence 9999999999998887765543 37889999999999999999999999999876432 34455668999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
++|+| ++.+|++|+.||.|++||+++.+. +..+ +|...|.+++|+|++++|++++.|+.|++||++++.+..
T Consensus 170 ~~~sp-dg~~lasg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~--- 242 (321)
T 3ow8_A 170 IAYSP-DGKYLASGAIDGIINIFDIATGKL---LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG--- 242 (321)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCcE---EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---
Confidence 99999 999999999999999999976543 3333 789999999999999999999999999999998765421
Q ss_pred ceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC
Q 009022 396 EIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 396 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
.+..+. ....++|+|+ |.+++ +|+.|+.|+|||+.+++++..+.+|. ..+.++ +|+|++
T Consensus 243 ------~~~~h~~~v~~~~~sp~---------~~~l~---s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v-~~s~~g 302 (321)
T 3ow8_A 243 ------TLSGHASWVLNVAFCPD---------DTHFV---SSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGV-KYNGNG 302 (321)
T ss_dssp ------EECCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEEETTTTEEEEEECCCS-SCEEEE-EECTTS
T ss_pred ------EEcCCCCceEEEEECCC---------CCEEE---EEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEE-EECCCC
Confidence 112222 2457899998 67777 78999999999999999999888776 778888 999999
Q ss_pred cEEEEec-CCcEEEEcCC
Q 009022 475 DVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 475 ~~l~sgs-dg~i~vwd~~ 491 (546)
++|++++ ||.|+|||+.
T Consensus 303 ~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCeEEEEeCC
Confidence 9999999 9999999963
No 3
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=332.04 Aligned_cols=314 Identities=16% Similarity=0.205 Sum_probs=237.6
Q ss_pred eeeeeccccCC-CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee--EEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 161 VNCAVIRYHSR-RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 161 ~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
.++.++.+|.+ .|++|+|+|+| ++||+|+.|++|+||++.+.... ..+..+|...|.+++|+|+ +++|++++.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEEEECCC
Confidence 45678899998 99999999999 78999999999999999876533 3334689999999999999 99999999999
Q ss_pred eEEEEECCCCce--eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 238 TVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 238 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
.|++|++..+.. +..+..+.. .|.+++|+|++++|++++.|+.|++||+..............|...|.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~---------~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHEN---------EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred cEEEEEccCCCeEEEEEccCCCC---------CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 999999987743 444444332 599999999999999999999999999987654433344566777899
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
+++|+| ++.+|++++.|+.|++||++...........+|...|++++|+|++++|++++.|++|++|++..........
T Consensus 155 ~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 155 HVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 999999 9999999999999999998754321122333799999999999999999999999999999975432211100
Q ss_pred --------ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH--------hhcCC
Q 009022 396 --------EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA--------EVMDP 459 (546)
Q Consensus 396 --------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~--------~~~~~ 459 (546)
................++|+|. +.+++ +++.|+.|++|+...+.... .+...
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------~~~l~---s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQL---------TGALA---TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECTT---------TCCEE---EEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEecC---------CCEEE---EEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence 0011111112233467889988 55555 68889999999987653211 11123
Q ss_pred CCCcccceeeecCCC-cEEEEec-CCcEEEEcCCCCCcccee
Q 009022 460 NITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~-~~l~sgs-dg~i~vwd~~~~~~~~~~ 499 (546)
|...|.++ +|+|++ .+||+|+ ||+|+||++.+++.+...
T Consensus 302 h~~~V~~v-~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 302 HSQDVNCV-AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSSCEEEE-EECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccCcEeEe-EEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 44788888 999998 5999999 999999999988766554
No 4
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-43 Score=346.36 Aligned_cols=317 Identities=27% Similarity=0.456 Sum_probs=242.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe-cccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
....+|...|+||+|+|.++++||+|+.||+|+|||+.+......+ ..+|...|++|+|+|.++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4567899999999999976689999999999999999876654433 357999999999999658899999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|+.++........+. ....+.+++|+|++.+|++|+.+|.|++||++.... ..+..|...|.+++|+|.
T Consensus 193 d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 193 DFKGNILRVFASSDT-------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp ETTSCEEEEEECCSS-------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----CCSBCCSSCEEEEEECTT
T ss_pred eccCCceeEEeccCC-------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----EEEecccceEEeeeecCC
Confidence 998765443332221 112478899999999999999999999999975432 234456679999999994
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
...+|++|+.|+.|+|||+++......+.. .+|...|++++|+|++.+|++++.||.|+|||+.++..... ...+..
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~--~~~~~~ 339 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG--LIPHPH 339 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE--ECCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE--Eecccc
Confidence 456889999999999999987665444433 37999999999999999999999999999999998765221 111222
Q ss_pred CCcccCCceeEEecCCCCCCceeE--EeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 402 DFNRHLTPFRAEWDPKDPSESLAV--IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~~~~~~~--~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
........+...|+|......+.. .+.+++ .++..++.|++||..+|+.+..+..++...+.++.+|+|+|++|++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS--CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCC--SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEE--EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 333444556778888743222111 112222 2556678899999999999988877777888888789999999999
Q ss_pred ecCCcEEEEcCCCCCc
Q 009022 480 GSSRSIFIWRPKEKSE 495 (546)
Q Consensus 480 gsdg~i~vwd~~~~~~ 495 (546)
|+|+.|+||++.+|+.
T Consensus 418 g~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 418 AMGYHILIWSQQEART 433 (435)
T ss_dssp ECSSEEEECCCC----
T ss_pred EcCCcEEEEECCcCee
Confidence 9999999999998874
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-42 Score=328.79 Aligned_cols=287 Identities=18% Similarity=0.252 Sum_probs=240.7
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
...+|.+|.+.|++++|+|++ ++|++|+.||+|+|||+.++.....+ ..|...|.+++|+|+ +.+|++++.|+.|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~i 123 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS-GNYVACGGLDNICSI 123 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT-SSEEEEEETTCEEEE
T ss_pred hheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC-CCEEEEEeCCCeEEE
Confidence 457899999999999999999 79999999999999999988877776 679999999999999 999999999999999
Q ss_pred EECCCCc----eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 242 TDLETGL----ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 242 wd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
|++.++. ....+..+.. .+.++.|++++. +++++.|+.|++||+.++.... ....|...|.++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~ 190 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTG---------YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT---TFTGHTGDVMSL 190 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSS---------CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEE
T ss_pred EECccCCCcceeEEEecCCCc---------cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE---EEcCCCCceEEE
Confidence 9998764 2333333322 589999998765 8899999999999998875432 445677799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcc
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
+|+| ++.+|++|+.|+.|++||+++... +..+ +|...|++++|+|++++|++|+.||+|++||+++++...
T Consensus 191 ~~~~-~~~~l~sg~~d~~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~---- 262 (340)
T 1got_B 191 SLAP-DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---- 262 (340)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred EECC-CCCEEEEEeCCCcEEEEECCCCee---EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE----
Confidence 9999 999999999999999999986543 3333 799999999999999999999999999999998765321
Q ss_pred eeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc
Q 009022 397 IVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 475 (546)
Q Consensus 397 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 475 (546)
....... ....+++|+|+ |.+++ +|+.|+.|++||+.+++.+..+.+|. ..+.++ +|+|+|.
T Consensus 263 ---~~~~~~~~~~v~~~~~s~~---------g~~l~---~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~-~~s~dg~ 325 (340)
T 1got_B 263 ---TYSHDNIICGITSVSFSKS---------GRLLL---AGYDDFNCNVWDALKADRAGVLAGHD-NRVSCL-GVTDDGM 325 (340)
T ss_dssp ---EECCTTCCSCEEEEEECTT---------SSEEE---EEETTSEEEEEETTTCCEEEEEECCS-SCEEEE-EECTTSS
T ss_pred ---EEccCCcccceEEEEECCC---------CCEEE---EECCCCeEEEEEcccCcEeeEeecCC-CcEEEE-EEcCCCC
Confidence 1111111 12457899998 77777 78999999999999999888888876 778888 9999999
Q ss_pred EEEEec-CCcEEEEc
Q 009022 476 VLASGS-SRSIFIWR 489 (546)
Q Consensus 476 ~l~sgs-dg~i~vwd 489 (546)
+|++|+ ||.|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999 99999997
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-42 Score=323.09 Aligned_cols=292 Identities=18% Similarity=0.239 Sum_probs=244.5
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.++|.+|.+.|++++|+|++ .+|++|+.||+|+|||+.++.....+ ..|..+|.+++|+|+ +++|++|+.|+.|++|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred EEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC-CCEEEEECCCCEEEEE
Confidence 46799999999999999999 79999999999999999998877777 689999999999999 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|+.+++.+..+..+.. .|.+++|+|++.+|++|+.|+.|++||++++.... .....|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPD---------YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp ETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--EEECCCCSCEEEEEECTT
T ss_pred ECCCCcEEEEEeCCCC---------cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--hhhcccCCcEEEEEECCC
Confidence 9999999888876654 49999999999999999999999999998764332 234556678999999996
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
++.+|++|+.|++|++||+++......+ ..+|...|..+.|+| ++.+|++++.|++|++||++++++..
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~-------- 222 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-------- 222 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEE-ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcccee-ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------
Confidence 6789999999999999999865543222 235778899999987 77899999999999999998876422
Q ss_pred cCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc--EE
Q 009022 401 HDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD--VL 477 (546)
Q Consensus 401 ~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~--~l 477 (546)
.+..+. ....++|+|+ +.+++ +|+.|+.|+|||+.+++++..+..+. ..+.++ +|+|++. +|
T Consensus 223 -~~~~h~~~v~~~~~~p~---------~~~l~---s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 287 (304)
T 2ynn_A 223 -TLEGHMSNVSFAVFHPT---------LPIII---SGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCI-ATHPTGRKNYI 287 (304)
T ss_dssp -EEECCSSCEEEEEECSS---------SSEEE---EEETTSCEEEEETTTCCEEEEECCSS-SSEEEE-EECTTCGGGCE
T ss_pred -eeCCCCCCEEEEEECCC---------CCEEE---EEcCCCeEEEEECCCCceeeeccCCC-ccEEEE-EECCCCCceEE
Confidence 112222 2346889998 66676 89999999999999999998887665 667777 8899875 68
Q ss_pred EEecCCcEEEEcCCC
Q 009022 478 ASGSSRSIFIWRPKE 492 (546)
Q Consensus 478 ~sgsdg~i~vwd~~~ 492 (546)
++|++..+.+|++..
T Consensus 288 asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 288 ASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEETTEEEEEECC-
T ss_pred EEecCCceEEEEecc
Confidence 888888899998865
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.1e-43 Score=337.40 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=243.4
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
..+.++|.+|.+.|++++|+|++ ++|++|+.|++|+|||+.++.....+ ..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~-g~~las~~~d~~v 132 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN-GQSVACGGLDSAC 132 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT-SSEEEECCSSSCC
T ss_pred eEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC-CCEEEEeeCCCcE
Confidence 45678899999999999999999 68999999999999999998877777 689999999999999 9999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceE--EeecCCCcEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAI--LIHRKGSKVVG 316 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~i~~ 316 (546)
++|++.+.............+.++ ...+.++.|.|+ +..|++|+.|+.|++||+.++....... ....|...|.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred EEEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 999997643211000000001112 124788889986 4579999999999999999876543211 01346678999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
++|+|.++++|++|+.|++|++||++.... .+.. .+|...|++++|+|++.+|++|+.||+|++||+++++......
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCC--CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCc--ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 999887889999999999999999974322 2222 3799999999999999999999999999999999876422110
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc---CCCCCcccceeeecC
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DPNITTISPVNKLHP 472 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~v~~~s~ 472 (546)
... ............++|+|+ |.+++ +|+.|+.|++||+.+++.+..+. ..|...|.++ +|+|
T Consensus 289 ~~~-~~~~~~~~~v~~~~~s~~---------g~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l-~~s~ 354 (380)
T 3iz6_a 289 REP-DRNDNELPIVTSVAFSIS---------GRLLF---AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL-GLSS 354 (380)
T ss_dssp CCC-SSSCCSSCSCSEEEECSS---------SSEEE---EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE-EECS
T ss_pred ccc-cccccccCceEEEEECCC---------CCEEE---EEECCCCEEEEECCCCceEEEEecccCCCCCceEEE-EECC
Confidence 000 000011112357899998 77887 78999999999999888766552 3344778888 9999
Q ss_pred CCcEEEEec-CCcEEEEcCCCCCc
Q 009022 473 RDDVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 473 ~~~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
+|.+|++|+ ||+|+||++...+.
T Consensus 355 dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 355 DGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SSSEEEEECTTSCEEEEECCSSSS
T ss_pred CCCEEEEeeCCCCEEEEecCCCcc
Confidence 999999999 99999999987643
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=325.21 Aligned_cols=290 Identities=20% Similarity=0.318 Sum_probs=239.7
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
....|.+|.+.|++++|+|++ ++|+||+.||+|+|||..+......+ ..|...|.+++|+|+ +.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS-GCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT-SSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC-CCEEEEeeCCCCEEE
Confidence 346799999999999999999 79999999999999999888777766 578899999999999 999999999999999
Q ss_pred EECCCCc------eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 242 TDLETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 242 wd~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
|++.... ....+..+.. .|.+++|+|++..|++++.|+.|++||+.+++... .+..|...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~ 200 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTN---------YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---SFHGHGADVL 200 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSS---------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEE
T ss_pred EEEeccccccccccceeeeccCC---------cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE---EEcCCCCCeE
Confidence 9987542 2222333322 58999999999999999999999999999876433 4456677899
Q ss_pred EEEECCC-CCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 316 GLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 316 ~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
+++|+|. ++.+|++|+.||.|++||+++... +..+ +|...|++++|+|++.+|++++.|++|++||++.++...
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~- 276 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA- 276 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 9999883 358999999999999999986543 3333 799999999999999999999999999999998754311
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
.............+.|+|+ |.+++ +|+.|+.|+|||+.+++.+..+.+|. ..+.++ +|+|+
T Consensus 277 -----~~~~~~~~~~~~~~~~s~~---------g~~l~---~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l-~~spd 337 (354)
T 2pbi_B 277 -----IYSKESIIFGASSVDFSLS---------GRLLF---AGYNDYTINVWDVLKGSRVSILFGHE-NRVSTL-RVSPD 337 (354)
T ss_dssp -----EECCTTCCSCEEEEEECTT---------SSEEE---EEETTSCEEEEETTTCSEEEEECCCS-SCEEEE-EECTT
T ss_pred -----EEcCCCcccceeEEEEeCC---------CCEEE---EEECCCcEEEEECCCCceEEEEECCC-CcEEEE-EECCC
Confidence 0001111122347889998 77777 78999999999999999888887776 788888 99999
Q ss_pred CcEEEEec-CCcEEEEc
Q 009022 474 DDVLASGS-SRSIFIWR 489 (546)
Q Consensus 474 ~~~l~sgs-dg~i~vwd 489 (546)
|++|++|+ ||+|+||+
T Consensus 338 g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 338 GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEcCCCCEEecC
Confidence 99999999 99999996
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.9e-42 Score=353.52 Aligned_cols=374 Identities=12% Similarity=0.175 Sum_probs=273.7
Q ss_pred eccCCCcccc-ccccccccCCccccCCCCCCCCchhhhhc-----ccCCCCCCCCCCcc---------------------
Q 009022 104 CKMPGHTTMS-CPHRVATEYGVTPASHRNAGNPVEYVFER-----QLRPNMTYMKPAHV--------------------- 156 (546)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------------------- 156 (546)
..+.+|+..+ +..+.+....+++++.+.++++|+..... .+......+.....
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 3456787444 44444445677888888888888753211 11111111111111
Q ss_pred -CCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 157 -IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 157 -~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
.....+...+.+|...|++++|+|++..+|++|+.|++|++||..+.+....+ .+|...|.+++|+|+ +.+|++++.
T Consensus 133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd-g~~las~s~ 210 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD-GSLFASTGG 210 (611)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT-SSEEEEEET
T ss_pred EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC-CCEEEEEEC
Confidence 11223445688999999999999998557999999999999999887777666 789999999999999 999999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcce-----------
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA----------- 304 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------- 304 (546)
|++|++||+.+++.+..+..... ....+...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~--~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSL--KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTS--SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CCcEEEEECCCCcEeeeeccccc--cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999988776632110 00112236999999999999999999999999999876432211
Q ss_pred -----------------------------EEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee-----
Q 009022 305 -----------------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL----- 350 (546)
Q Consensus 305 -----------------------------~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 350 (546)
.....|...|.+++|+| ++.+|++++.|++|++||+.+......+
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 12235667899999999 9999999999999999998754211000
Q ss_pred ---------------------------------------------------------------------------eecCC
Q 009022 351 ---------------------------------------------------------------------------CDLPH 355 (546)
Q Consensus 351 ---------------------------------------------------------------------------~~~~~ 355 (546)
..+.|
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 00012
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 356 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 356 ~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
...+.+++|+|++++|++|+.|++|++||+.++.+.. ... .........++|+|+ |++++ +
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~-----~~~--~~h~~~v~~v~fspd---------g~~la---s 508 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE-----VKT--IVHPAEITSVAFSNN---------GAFLV---A 508 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE-----EEE--EECSSCEEEEEECTT---------SSEEE---E
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee-----eec--cCCCCceEEEEECCC---------CCEEE---E
Confidence 3457899999999999999999999999997653210 011 112233467999998 88888 8
Q ss_pred CCcCcceEEEECCc-hhhhHh-hcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc-c-ceeecc
Q 009022 436 GAALHPIDFIDITT-GQLVAE-VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE-L-VEQKEE 502 (546)
Q Consensus 436 g~~d~~i~iwd~~~-~~~~~~-~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~-~-~~~~~~ 502 (546)
++.|++|++|++.+ ++++.. +...|...|.++ +|+|+|++||+|+ |++|+||++.++.. + ..+.+|
T Consensus 509 ~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v-~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV-SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred EcCCCCEEEEEcCCCCceeeeeeeeecccceeEE-EECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 99999999999987 655544 334355788888 9999999999999 99999999998753 3 455666
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-41 Score=349.83 Aligned_cols=387 Identities=12% Similarity=0.115 Sum_probs=282.5
Q ss_pred hccCccceeeeehhhhhhccCCCcc-------cCcccceeec--CCCC---------------------ceeeeccCCCc
Q 009022 61 KRKGKAPITISLKKVCKVCKKPGHE-------AGFKGATYID--CPMK---------------------PCFLCKMPGHT 110 (546)
Q Consensus 61 ~~~~~~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~---------------------~~~~~~~~~~~ 110 (546)
.+.+...++++.|+++++|+..... .++.+.+..- .+.. ......+.+|.
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~ 147 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 147 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence 3456788899999999999843110 1122111110 0100 01123456777
Q ss_pred ccccccccccc-C-CccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEE
Q 009022 111 TMSCPHRVATE-Y-GVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLS 188 (546)
Q Consensus 111 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 188 (546)
..+....+.+. . .+++++.+.+.++|+.. ...+...+.+|...|++++|+|+| ++|++
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-------------------~~~~~~~l~~H~~~V~~v~fspdg-~~las 207 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-------------------PFKFKSTFGEHTKFVHSVRYNPDG-SLFAS 207 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETT-------------------TBEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECC-------------------CCeEeeeeccccCceEEEEECCCC-CEEEE
Confidence 44444444443 3 37888888888888621 123456789999999999999999 79999
Q ss_pred EcCCCcEEEEeCCCCceeEEecc------cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC--
Q 009022 189 GDKKGQVGVWDFYKVSEKIVYGN------IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW-- 260 (546)
Q Consensus 189 ~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 260 (546)
|+.|++|+|||+.++.....+.. +|...|.+++|+|+ +.+|++++.|++|++||+.+++.+..+.......
T Consensus 208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999998877766632 79999999999999 9999999999999999999988776554321000
Q ss_pred --------------------------------CCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcce----
Q 009022 261 --------------------------------HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA---- 304 (546)
Q Consensus 261 --------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 304 (546)
....+...|.+++|+|++++|++++.|+.|++||+.++......
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 00112346999999999999999999999999998765321100
Q ss_pred ---------------------------------------------------------------------------EEeec
Q 009022 305 ---------------------------------------------------------------------------ILIHR 309 (546)
Q Consensus 305 ---------------------------------------------------------------------------~~~~~ 309 (546)
.....
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 00001
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC-C
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF-G 388 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~-~ 388 (546)
+...+.+++|+| ++++|++|+.|++|++||+..... ..+...+|...|++++|+|++++|++++.|++|++|++.+ +
T Consensus 447 ~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~-~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 447 ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV-SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE-EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce-eeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 223578999999 999999999999999999965322 1122357999999999999999999999999999999986 4
Q ss_pred CCCCCCcceeeccCCc-ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh-h-HhhcCCCCCccc
Q 009022 389 NLDSPSREIVHSHDFN-RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL-V-AEVMDPNITTIS 465 (546)
Q Consensus 389 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~-~-~~~~~~~~~~i~ 465 (546)
++... .... +.....+++|+|+ |++++ +|+.|++|+||++.++.. + ..+.+|....+.
T Consensus 525 ~~~~~-------~~~~~H~~~V~~v~fspd---------g~~la---sgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~ 585 (611)
T 1nr0_A 525 ELAHT-------NSWTFHTAKVACVSWSPD---------NVRLA---TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 585 (611)
T ss_dssp EESCC-------CCCCCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred ceeee-------eeeeecccceeEEEECCC---------CCEEE---EEECCCcEEEEECCCcccccchhhccCcccCee
Confidence 43211 0112 2233468999998 88888 899999999999988763 3 345566357888
Q ss_pred ceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 466 PVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 466 ~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
++ +|+|+++ |++|+ |++|++|++.
T Consensus 586 ~v-~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 586 SV-IWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EE-EEEETTE-EEEEETTSCEEEEECC
T ss_pred EE-EEcCCCE-EEEecCCCCEEEEecc
Confidence 88 9999999 99988 9999999973
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-41 Score=321.23 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=235.5
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-----eeEEecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
....+|.+|.+.|++|+|+|++.++|++|+.|++|++|++.... ....+ .+|...|.+++|+|+ +.+|++++.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d-g~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD-GAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT-SSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC-CCEEEEEeC
Confidence 34568999999999999999776799999999999999986432 22333 789999999999999 999999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
|++|++||+.+++.+..+..+.. .|.+++|+|++.+|++|+.|+.|++||++.. .......|...|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~----~~~~~~~h~~~v~ 152 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKS---------DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVS 152 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSS---------CEEEEEECTTSCEEEEEETTSCEEEEETTSC----EEEEECCCSSCEE
T ss_pred CCEEEEEECCCCCeeEEEccCCC---------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEeccCCcEE
Confidence 99999999999999888876654 4999999999999999999999999999743 2334556777899
Q ss_pred EEEECCC-----CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 316 GLHCNPI-----QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 316 ~~~~~p~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++.++|. ++..|++++.|+.|++||+++... .....+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999983 234899999999999999975433 222347999999999999999999999999999999987654
Q ss_pred CCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC-------CCCc
Q 009022 391 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP-------NITT 463 (546)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~-------~~~~ 463 (546)
... +........++|+|+ |.+++ ++. +..|++|++..+..+..+..+ +...
T Consensus 231 ~~~---------~~~~~~v~~~~~sp~---------~~~la---~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 231 MYT---------LSAQDEVFSLAFSPN---------RYWLA---AAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEE---------EECCSCEEEEEECSS---------SSEEE---EEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred EEE---------ecCCCcEEEEEEcCC---------CCEEE---EEc-CCCcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 221 112234568999998 56665 333 455999999887665544322 1244
Q ss_pred ccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 464 ISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 464 i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
+.++ +|+|+|++|++|+ ||.|+||++.++
T Consensus 289 v~~~-~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 289 AVSL-AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEE-EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeEE-EECCCCCEEEEeecCceEEEEEEeec
Confidence 5666 9999999999999 999999998764
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-40 Score=313.36 Aligned_cols=298 Identities=19% Similarity=0.344 Sum_probs=244.5
Q ss_pred CCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 158 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 158 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
|......++.+|.+.|++++|+|++ ++|++|+.||.|+||++.++.....+ .+|...|.+++|+|+ +++|++++.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~~~d~ 87 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD-SNLLVSASDDK 87 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred CCceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC-CCEEEEECCCC
Confidence 3445567889999999999999999 79999999999999999988877776 689999999999999 99999999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.|+.|++||+++++... ....+..+|.++
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~ 155 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV 155 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEE
T ss_pred EEEEEECCCCcEEEEEcCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEE
Confidence 999999999998888776543 49999999999999999999999999999865432 345566789999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
+|+| ++.+|++++.||.|++||+++......+ ...+...+.+++|+|++++|++++.|+.|++||+.+++....
T Consensus 156 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---- 229 (312)
T 4ery_A 156 HFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---- 229 (312)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE----
T ss_pred EEcC-CCCEEEEEeCCCcEEEEECCCCceeeEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----
Confidence 9999 9999999999999999999865432222 125677899999999999999999999999999987754211
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEE
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL 477 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 477 (546)
..........+...+++.. +.+++ +|+.|+.|++||+.+++.+..+.+|. ..+.++ +|+|++++|
T Consensus 230 --~~~~~~~~~~~~~~~~~~~--------~~~l~---sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~-~~~p~~~~l 294 (312)
T 4ery_A 230 --YTGHKNEKYCIFANFSVTG--------GKWIV---SGSEDNLVYIWNLQTKEIVQKLQGHT-DVVIST-ACHPTENII 294 (312)
T ss_dssp --ECSSCCSSSCCCEEEECSS--------SCEEE---ECCTTSCEEEEETTTCCEEEEECCCS-SCEEEE-EECSSSSEE
T ss_pred --EEecCCceEEEEEEEEeCC--------CcEEE---EECCCCEEEEEECCCchhhhhhhccC-CcEEEE-eecCcCCce
Confidence 0111111111223333322 56666 79999999999999999998888876 677777 999999999
Q ss_pred EEec---CCcEEEEcCC
Q 009022 478 ASGS---SRSIFIWRPK 491 (546)
Q Consensus 478 ~sgs---dg~i~vwd~~ 491 (546)
++++ |+.|++|+..
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 9874 8999999864
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.2e-41 Score=318.86 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=230.4
Q ss_pred eeeeeccccCCCeEEEEE-----cC-CCCcEEEEEcCCCcEEEEeCCCCc------eeEEecccCCCceEEEEEecCCCC
Q 009022 161 VNCAVIRYHSRRVTCLEF-----HP-TNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDG 228 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~-----~~-~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~ 228 (546)
.+..+|.+|.+.|++++| ++ ++ .+|++|+.|++|+||++.... .......+|...|.+++|+|+ +.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~ 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NC 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TT
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CC
Confidence 456789999999999999 77 77 799999999999999987542 122233789999999999999 99
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEee
Q 009022 229 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 308 (546)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 308 (546)
+|++++.|++|++||+.+++.+..+..+.. .|.+++|+|++++|++++.|+.|++||+..... .......
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~---------~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~ 159 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQS---------EVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKE 159 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCS---------CEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTT
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCC---------cEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeeccc
Confidence 999999999999999999998888876654 499999999999999999999999999974221 1111112
Q ss_pred cCCCcEEEEEECCCCC----------CEEEEEeCCCeEEEEECCCCCCCceee-ecCCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 309 RKGSKVVGLHCNPIQP----------ELLLSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
.+...|.+++|+| .+ .+|++++.|+.|++||.. ..... ..+|...|.+++|+|++++|++|+.|
T Consensus 160 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 160 NHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp SCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence 4566899999999 54 689999999999999953 22222 23799999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH--h
Q 009022 378 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA--E 455 (546)
Q Consensus 378 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~--~ 455 (546)
|.|++||+....... .. +........++|+|+ +.+++ ++.++.|++|++.+++... .
T Consensus 235 g~v~iwd~~~~~~~~--~~------~~~~~~v~~v~~sp~---------~~~la----~~~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 235 KKLLIWDILNLTYPQ--RE------FDAGSTINQIAFNPK---------LQWVA----VGTDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp CEEEEEESSCCSSCS--EE------EECSSCEEEEEECSS---------SCEEE----EEESSCEEEEESSSCCSCSEEE
T ss_pred CeEEEEECCCCcccc--ee------ecCCCcEEEEEECCC---------CCEEE----EECCCCEEEEEeCCCCCCceEE
Confidence 999999995433211 11 111122457899998 55554 3457889999998876543 3
Q ss_pred hcC----------CCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 456 VMD----------PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 456 ~~~----------~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+.. .+...+.++ +|+|+|++|++|+ ||.|++|++.+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSL-AWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEE-EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEE-EECCCCCeEEEecCCceEEEEEEEccC
Confidence 321 233567777 9999999999999 9999999987653
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=314.90 Aligned_cols=304 Identities=16% Similarity=0.209 Sum_probs=222.8
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEeccc-CCCceEEEEEecCCCCEEEEEeCC
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNI-HSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
..++..|.+|.+.|++++|+|+ +|++|+.|++|+||++.... ....+... |...|.+++|+|+ +.+|++++.|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D 79 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETT
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCC
Confidence 3456789999999999999985 79999999999999998753 33334234 9999999999999 9999999999
Q ss_pred CeEEEEECCCC-------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CcceEEee
Q 009022 237 GTVSCTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR-SGEAILIH 308 (546)
Q Consensus 237 g~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~ 308 (546)
++|++|++... ..+..+..|.. .|.+++|+|++++|++++.|+.|++||++.... ........
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~---------~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHEN---------EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC-------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCC---------cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 99999998532 33344433332 599999999999999999999999999964322 22233455
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCC--CCEEEEEeCCCcEEEEEC
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~--~~~l~s~s~dg~i~vwd~ 385 (546)
.|...|.+++|+| ++.+|++++.|++|++||+.+... ..+..+ +|...|.+++|+|+ +.+|++++.|++|++|++
T Consensus 151 ~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 151 EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 6777999999999 999999999999999999865321 233333 79999999999997 778999999999999999
Q ss_pred CCCCCCCCCc-ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh--hhHhh-cCCCC
Q 009022 386 IFGNLDSPSR-EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--LVAEV-MDPNI 461 (546)
Q Consensus 386 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~--~~~~~-~~~~~ 461 (546)
..+....... ................++|+|. + +++ +++.|+.|+||+..++. .+... .+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---------~-~l~---s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~ 295 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN---------G-LIA---SVGADGVLAVYEEVDGEWKVFAKRALCHGV 295 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTT---------S-CEE---EEETTSCEEEEEEETTEEEEEEEESCTTTT
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCC---------C-EEE---EEeCCCEEEEEEcCCCceEEEecccccccc
Confidence 7653211100 0011111112223457888864 3 344 67899999999998763 23222 34543
Q ss_pred CcccceeeecC--CCcEEEEec-CCcEEEEcCCC
Q 009022 462 TTISPVNKLHP--RDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 462 ~~i~~v~~~s~--~~~~l~sgs-dg~i~vwd~~~ 492 (546)
..+.++ +|+| ++++||+|+ ||+|+||++.+
T Consensus 296 ~~v~~v-~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVV-KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEE-EEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEE-EEecCCCceEEEEecCCCcEEEEEecc
Confidence 367777 8999 789999999 99999999865
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-41 Score=322.94 Aligned_cols=295 Identities=10% Similarity=0.137 Sum_probs=222.3
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcC------CCcEEEEeCCCCceeE---EecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDK------KGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
.+|...|++++|+|+| ++||+|+. |+.|++|+..++.... .....|...|.+++|+|+ + .+++++.||
T Consensus 39 ~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-K-GILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-T-EEEEEETTS
T ss_pred ccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-C-CEEEEECCC
Confidence 4699999999999999 79999987 7789999987654221 112468899999999997 5 566788899
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
+|++||+.+++.......... .+...|.+++|+|++++|++++.|+.|++||+.+++... .+..|...|+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~-----~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~---~~~~h~~~v~~v 187 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKY-----EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK---SYNAHSSEVNCV 187 (357)
T ss_dssp CEEEC--------CCCCEEEC-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEE
T ss_pred EEEEeeccccceeEEEeeccC-----CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEE
Confidence 999999998876543322111 112359999999999999999999999999999875433 345667799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCCCCCCCcc
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNLDSPSRE 396 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 396 (546)
+|+|....++++++.||.|++||+++.+....+....+...+++++|+|+ +.+|++|+.|+.|++||+++++....
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--- 264 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--- 264 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE---
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE---
Confidence 99994446899999999999999988766555544467888999999995 67899999999999999988765321
Q ss_pred eeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC-CC
Q 009022 397 IVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RD 474 (546)
Q Consensus 397 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~-~~ 474 (546)
+..+ ....+++|+|+. +++++ +|+.|++|+|||+.+++++..+ +|. ..|.++ +|+| ++
T Consensus 265 ------~~~~~~~v~~l~~sp~~--------~~~la---sgs~D~~i~iwd~~~~~~~~~~-~H~-~~V~~v-afsP~d~ 324 (357)
T 4g56_B 265 ------SAVHSQNITGLAYSYHS--------SPFLA---SISEDCTVAVLDADFSEVFRDL-SHR-DFVTGV-AWSPLDH 324 (357)
T ss_dssp ------ECCCSSCEEEEEECSSS--------SCCEE---EEETTSCEEEECTTSCEEEEEC-CCS-SCEEEE-EECSSST
T ss_pred ------EeccceeEEEEEEcCCC--------CCEEE---EEeCCCEEEEEECCCCcEeEEC-CCC-CCEEEE-EEeCCCC
Confidence 1112 223578999973 34566 7899999999999999887654 554 788888 9998 79
Q ss_pred cEEEEec-CCcEEEEcCCCCCc
Q 009022 475 DVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 475 ~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
.+|++|+ ||+|++|++.+...
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp TEEEEEETTSCEEEEECC----
T ss_pred CEEEEEcCCCeEEEEECCCCCc
Confidence 9999999 99999999976443
No 16
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-39 Score=314.12 Aligned_cols=314 Identities=26% Similarity=0.426 Sum_probs=245.1
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
......+.+|...|++++|+|+++++|++|+.||.|+|||+.+......+. .+|...|.+++|+|+++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 445577899999999999999986699999999999999999887766653 3699999999999943899999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
|++||+.+ .....+..+.. ....|.+++|+|++.+|++++.++.|++||++. . .......|...|.+++
T Consensus 143 i~iwd~~~-~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~---~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDS------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-H---EIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEEEETTS-CEEEEEECCCC------SSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-C---EEEEEECSSSCEEEEE
T ss_pred EEEEECCC-CceEEEeccCC------CCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-C---EEEEeccCCCcEEEEE
Confidence 99999986 44444433221 112599999999999999999999999999942 2 2334556777999999
Q ss_pred ECCCCCC-EEEEEeCCCeEEEEECCCCCC-CceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 319 CNPIQPE-LLLSCGNDHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 319 ~~p~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
|+| ++. +|++++.|+.|++||+++... ...+..++|...|.+++|+| ++.+|++++.|+.|++||+.+++......
T Consensus 212 ~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 212 FNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp ECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred ECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 999 776 999999999999999987443 23445557999999999999 99999999999999999999887643211
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeE--EeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAV--IGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
.+......+...+.+.|+|......+.. .|++ +|+.|+.|+|||+.+++++..+.++....+..+++|+|+
T Consensus 291 --~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 291 --IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT 363 (383)
T ss_dssp --ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT
T ss_pred --cccccccccccceEEeccCCCCceEEEecCCccc-----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC
Confidence 1222223344445567777632221111 1322 578999999999999999998887653444444489999
Q ss_pred CcEEEEecCCcEEEEcCCC
Q 009022 474 DDVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 474 ~~~l~sgsdg~i~vwd~~~ 492 (546)
+++|++|+||.|+||++.+
T Consensus 364 g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 364 GDVLASGMGFNILIWNRED 382 (383)
T ss_dssp SSEEEEEETTEEEEEECC-
T ss_pred ccEEEEecCCcEEEEecCC
Confidence 9999999999999999874
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=315.86 Aligned_cols=290 Identities=11% Similarity=0.111 Sum_probs=220.3
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC------------CceeEEecccCCCceEEEEEecCCCCEEEEEeC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
.|...|.+++|+|+| ++|++++ |+++++||... ...... ..|...|.+++|+|+ +.|++|+.
T Consensus 28 ~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d--~~l~~~s~ 101 (344)
T 4gqb_B 28 CMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE--RGILVASD 101 (344)
T ss_dssp SCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT--TEEEEEET
T ss_pred cccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC--CeEEEEEC
Confidence 477789999999999 6888877 77888887321 011111 236778999999996 47889999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
||+|+|||+.+++.+..+...... | ...|++++|+|++++|++|+.|+.|++||+.+++... .+..|...|.
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~---H--~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~---~~~~h~~~V~ 173 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYE---H--DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---SYRAHAAQVT 173 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEEC---C--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEE
T ss_pred CCEEEEEeccCCCceeEeeccccC---C--CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---EEcCcCCceE
Confidence 999999999998766554321111 1 1259999999999999999999999999999875443 4456777999
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 394 (546)
+++|+|....+|++++.|++|++||+++.+....+....+...+.+++|+| ++.+|++|+.||.|++||+++++++..
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~- 252 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS- 252 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-
Confidence 999999444689999999999999998776544444345677899999999 567899999999999999998775321
Q ss_pred cceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCC
Q 009022 395 REIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 473 (546)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~ 473 (546)
+..+. ...+++|+|+. ..+++ +|+.|++|+|||+.+++++. +.+|. ..|.++ +|+|+
T Consensus 253 --------~~~h~~~v~~v~fsp~g--------~~~la---sgs~D~~i~vwd~~~~~~~~-~~~H~-~~V~~v-~~sp~ 310 (344)
T 4gqb_B 253 --------SAVHSQCVTGLVFSPHS--------VPFLA---SLSEDCSLAVLDSSLSELFR-SQAHR-DFVRDA-TWSPL 310 (344)
T ss_dssp --------EECCSSCEEEEEECSSS--------SCCEE---EEETTSCEEEECTTCCEEEE-ECCCS-SCEEEE-EECSS
T ss_pred --------EcCCCCCEEEEEEccCC--------CeEEE---EEeCCCeEEEEECCCCcEEE-EcCCC-CCEEEE-EEeCC
Confidence 12222 23578999983 24566 78999999999999987653 55655 788888 99999
Q ss_pred Cc-EEEEec-CCcEEEEcCCCCC
Q 009022 474 DD-VLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 474 ~~-~l~sgs-dg~i~vwd~~~~~ 494 (546)
++ +|++|+ ||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 86 567888 9999999998754
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.3e-40 Score=312.80 Aligned_cols=297 Identities=15% Similarity=0.226 Sum_probs=234.7
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce----eEEecccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
....+|+||.+.|++|+|+|++.++||||+.|++|+|||+.+... ......+|...|.+++|+|+ +.+|++++.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-CCEEEEEccc
Confidence 345679999999999999998657999999999999999976542 22233789999999999999 9999999999
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+.|++|+............... .+..+.+++++.+|++++.|+.+++||+...... ......+...+..
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~--~~~~~~~~~~v~~ 176 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTK---------DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY--TVQDESHSEWVSC 176 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSS---------CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSSCSSCEEE
T ss_pred ccceEEeecccceeeeecCCCC---------ceeEEEEeecCccceeecCCCeEEEEEeCCCceE--EEEeccccCcccc
Confidence 9999999998887776655443 4788889999999999999999999998764432 2233455668999
Q ss_pred EEECCCC-CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 317 LHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 317 ~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
++|++.. ..++++++.|+.|++||+++... .....+|...|++++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~--- 251 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY--- 251 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---
Confidence 9998832 35788999999999999976543 22223799999999999999999999999999999998765421
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC--------CCCCcccce
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD--------PNITTISPV 467 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~--------~~~~~i~~v 467 (546)
.+........+.|+|+ +.++ +++.|+.|+|||+.++..+..+.. .+...+.++
T Consensus 252 ------~~~~~~~v~~~~~~~~---------~~~~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 252 ------TLDGGDIINALCFSPN---------RYWL----CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp ------EEECSSCEEEEEECSS---------SSEE----EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred ------eecCCceEEeeecCCC---------Ccee----eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence 1122223456788886 4444 356789999999988765544432 244678888
Q ss_pred eeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 468 NKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 468 ~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+|+|+|++|++|+ ||.|+|||+.+|.
T Consensus 313 -~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 313 -AWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -EECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -EECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999 9999999999886
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-39 Score=313.24 Aligned_cols=296 Identities=18% Similarity=0.236 Sum_probs=231.6
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC------------------CCceEEEEEecCCCC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH------------------SCIVNNIRFNPTNDG 228 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~ 228 (546)
.+|.+.|+|++|+|+| ++||+|+ ++.++||++.++.....+. .| ...|.+++|+|+ ++
T Consensus 61 ~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~ 136 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GK 136 (393)
T ss_dssp EECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEEC-C-----------------CCCCBEEEEEECTT-SS
T ss_pred cCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEec-CccccccccccccccccCCCceeEEEEEECCC-CC
Confidence 3699999999999999 6899887 6899999999887766652 22 224999999999 99
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEee
Q 009022 229 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH 308 (546)
Q Consensus 229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 308 (546)
+|++|+.|+.|++||+.+++.+..+..+.. .|.+++|+|++.+|++++.|+.|++||++++.... ..
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~----~~ 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ---------DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL----TL 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCC---------CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE----EE
Confidence 999999999999999999988887765543 49999999999999999999999999999865432 22
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceee-----ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-----DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
.+...+.+++|+|.++.+|++|+.|+.|++||+++......+. ..+|...|.+++|+|++.+|++++.|+.|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3345799999999788999999999999999998654322221 13688999999999999999999999999999
Q ss_pred ECCCCCCCCCCcce---eeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 384 DSIFGNLDSPSREI---VHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 384 d~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
|+.+.......... .....+.++ .....++|+|+ +.+++ +|+.|+.|++||+.+++.+..+.+|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------~~~l~---sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN---------DEYIL---SGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGG---------GCEEE---EEETTSEEEEEETTTCCEEEEEECC
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC---------CCEEE---EEeCCCeEEEEECCCCeEEEEECCC
Confidence 99875432211100 000111122 22356788887 77777 8999999999999999999888887
Q ss_pred CCCcccceeeecC------CCcEEEEec-CCcEEEEcCCCC
Q 009022 460 NITTISPVNKLHP------RDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 460 ~~~~i~~v~~~s~------~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
. ..+.++ +|++ ++++|++|+ ||+|+||++...
T Consensus 352 ~-~~v~~v-~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 352 R-NSVISV-AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp S-SCEEEE-EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred C-CCEEEE-EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 6 677777 6654 789999999 999999998643
No 20
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.6e-39 Score=336.29 Aligned_cols=293 Identities=16% Similarity=0.206 Sum_probs=232.6
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce----eEEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
....+.+|.+.|++|+|+|++..+|+||+.|++|+||++..... ......+|...|.+++|+|+ +.+|++|+.||
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDG 452 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCC
Confidence 34578999999999999998767999999999999999976431 22233789999999999999 99999999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
.|++||+.++.....+..|.. .|.+++|+|++++|++++.|+.|++||+..............|...|.++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTK---------DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSS---------CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred cEEEEECCCCcceeEEeCCCC---------CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 999999999998888876654 49999999999999999999999999986532211111113456689999
Q ss_pred EECCCCC--CEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 009022 318 HCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 318 ~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 394 (546)
+|+| ++ ..|++++.|++|++||+++... ... .+|...|++++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 524 ~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~---~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~- 598 (694)
T 3dm0_A 524 RFSP-NTLQPTIVSASWDKTVKVWNLSNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598 (694)
T ss_dssp EECS-CSSSCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC-
T ss_pred EEeC-CCCcceEEEEeCCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-
Confidence 9999 54 5899999999999999976443 333 37999999999999999999999999999999988764321
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCC-------------
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI------------- 461 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~------------- 461 (546)
+........++|+|+ +.+++ ++.++.|+|||+.+++.+..+..+..
T Consensus 599 --------~~~~~~v~~~~~sp~---------~~~l~----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 599 --------LEANSVIHALCFSPN---------RYWLC----AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp --------CBCSSCEEEEEECSS---------SSEEE----EEETTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred --------ecCCCcEEEEEEcCC---------CcEEE----EEcCCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 122233457899997 55554 34456699999999887665543211
Q ss_pred -----CcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 462 -----TTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 462 -----~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
..+.++ +|+|+|++|++|+ ||.|+||++.
T Consensus 658 ~~~~~~~~~~l-~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 658 TKRKVIYCTSL-NWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---CCCCEEEE-EECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCceeEEeeeE-EEcCCCCEEEEEcCCCeEEEEecc
Confidence 113455 8999999999999 9999999985
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=307.54 Aligned_cols=302 Identities=14% Similarity=0.148 Sum_probs=248.1
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
......|.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+ .+|...|.+++|+|+ +++|++++.||.|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~~~dg~i 98 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF-TKYCVTGSADYSI 98 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTTEE
T ss_pred ccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence 44556799999999999999999 79999999999999999998888777 689999999999999 9999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCcceE--------E
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAI--------L 306 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~--------~ 306 (546)
++||+.+++.+..+... . .+.+++|+|++.++++++.+ +.|.+||+.......... .
T Consensus 99 ~iwd~~~~~~~~~~~~~-~---------~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 168 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSP-V---------PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK 168 (369)
T ss_dssp EEEETTTCCEEEEEECS-S---------CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred EEEECCCCcEEEEeecC-C---------CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence 99999999988877622 1 49999999999999999999 999999998765433221 1
Q ss_pred eecCCC--cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 307 IHRKGS--KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 307 ~~~~~~--~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
...+.. .+.+++|+| ++.+|++++.+|.|++||+++.. ..+..+ .|...|.+++|+|++.+|++++.|+.|++|
T Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 169 IITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245 (369)
T ss_dssp EECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence 222223 899999999 99999999999999999997622 233333 688999999999999999999999999999
Q ss_pred ECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc--------------ceEEEECCc
Q 009022 384 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH--------------PIDFIDITT 449 (546)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~--------------~i~iwd~~~ 449 (546)
|+.+++.... +........+.|+|+ +.+++ +++.++ .|++||..+
T Consensus 246 d~~~~~~~~~---------~~~~~~~~~~~~~~~---------~~~l~---~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 246 DVSTLQVLKK---------YETDCPLNTAVITPL---------KEFII---LGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp ETTTCCEEEE---------EECSSCEEEEEECSS---------SSEEE---EEECCC-------------CEEEEEETTT
T ss_pred ECCCCceeee---------ecCCCCceeEEecCC---------CceEE---EeecCCCceEEEEecCCCcceeEEEecCC
Confidence 9988764221 112233457889998 44444 334444 799999999
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceee
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQK 500 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~ 500 (546)
++.+..+.+|. ..+.++ +|+|++++|++|+ ||.|+||++..+.....+.
T Consensus 305 ~~~~~~~~~~~-~~v~~~-~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 305 EEEIGRVQGHF-GPLNTV-AISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp CCEEEEEECCS-SCEEEE-EECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred Ccchhheeccc-CcEEEE-EECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 99998888776 778888 9999999999999 9999999998876555443
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.1e-38 Score=321.04 Aligned_cols=360 Identities=19% Similarity=0.283 Sum_probs=276.0
Q ss_pred CccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCccc-cccccccccCCccccCCCCCCCCchhhhhc
Q 009022 64 GKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFER 142 (546)
Q Consensus 64 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (546)
+...++++.++++++|+.... .+..+.+|... .+..+.+....+++++.+....+|+..
T Consensus 192 ~~~l~~~~~d~~v~~w~~~~~-----------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--- 251 (577)
T 2ymu_A 192 GQTIASASDDKTVKLWNRNGQ-----------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--- 251 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSC-----------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---
T ss_pred CCEEEEEcCCCEEEEEeCCCc-----------------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC---
Confidence 345566677777777753221 12233455533 333333344567777777777777521
Q ss_pred ccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEE
Q 009022 143 QLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF 222 (546)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 222 (546)
...+..+.+|...|++++|+|++ ++|++++.|+.|++|+... +....+ .+|...|.+++|
T Consensus 252 -----------------~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~-~~~~~~-~~h~~~v~~~~~ 311 (577)
T 2ymu_A 252 -----------------GQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAF 311 (577)
T ss_dssp -----------------SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEE
T ss_pred -----------------CCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC-cEEEEE-ecCCCCeEEEEE
Confidence 12346788999999999999999 6899999999999999754 444444 689999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 009022 223 NPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 302 (546)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 302 (546)
+|+ +.+|++++.|+.|++|++.... +..+..+.. .+.+++|+|++.+|++++.++.|++|+... +.
T Consensus 312 ~~~-~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~---------~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~-- 377 (577)
T 2ymu_A 312 SPD-GQTIASASDDKTVKLWNRNGQH-LQTLTGHSS---------SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL-- 377 (577)
T ss_dssp CTT-SSEEEEEETTSCEEEEETTSCE-EEEECCCSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTC-CE--
T ss_pred CCC-CCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCC---------CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CE--
Confidence 999 9999999999999999987544 444433322 589999999999999999999999999643 22
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
......|...|.+++|+| ++.+|++++.|+.|++||.. ...+..+ +|...|++++|+|++++|++++.|+.|+
T Consensus 378 -~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 378 -LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp -EEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -EEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 224456677899999999 99999999999999999963 2333333 7999999999999999999999999999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 461 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~ 461 (546)
+||+.. +... ... ........++|+|+ |++++ +++.|+.|+||+. +++++..+.+|.
T Consensus 452 ~w~~~~-~~~~----~~~----~~~~~v~~~~~spd---------~~~la---s~~~d~~i~iw~~-~~~~~~~~~~h~- 508 (577)
T 2ymu_A 452 LWNRNG-QLLQ----TLT----GHSSSVRGVAFSPD---------GQTIA---SASDDKTVKLWNR-NGQLLQTLTGHS- 508 (577)
T ss_dssp EEETTS-CEEE----EEE----CCSSCEEEEEECTT---------SCEEE---EEETTSEEEEEET-TSCEEEEEECCS-
T ss_pred EEECCC-CEEE----EEc----CCCCCEEEEEEcCC---------CCEEE---EEeCCCEEEEEcC-CCCEEEEEeCCC-
Confidence 999743 2211 111 11122357899998 77787 7899999999995 678888888876
Q ss_pred CcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 462 TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 462 ~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
..+.++ +|+|+|++||+|+ ||.|+|||+ +++.+.++.+|...|.+
T Consensus 509 ~~v~~l-~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 509 SSVRGV-AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 554 (577)
T ss_dssp SCEEEE-EECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEE
T ss_pred CCEEEE-EEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEE
Confidence 778888 9999999999999 999999996 68889999999876654
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.2e-38 Score=322.74 Aligned_cols=341 Identities=20% Similarity=0.312 Sum_probs=262.1
Q ss_pred CccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCccc-cccccccccCCccccCCCCCCCCchhhhhc
Q 009022 64 GKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFER 142 (546)
Q Consensus 64 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (546)
+...++++.++++++|+... ..+..+.+|... .+..+.+....+++++.+....+|+..
T Consensus 233 g~~l~~~~~d~~i~~w~~~~-----------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--- 292 (577)
T 2ymu_A 233 GQTIASASDDKTVKLWNRNG-----------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--- 292 (577)
T ss_dssp SSCEEEEETTSCEEEECTTS-----------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---
T ss_pred CCEEEEEeCCCEEEEEeCCC-----------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC---
Confidence 34455556666666665221 122334556533 333333344556777777777777521
Q ss_pred ccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEE
Q 009022 143 QLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF 222 (546)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 222 (546)
......+.+|...|++++|+|++ ++|++++.|+.|++|++..... ..+ .+|...|.+++|
T Consensus 293 -----------------~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-~~~-~~~~~~v~~~~~ 352 (577)
T 2ymu_A 293 -----------------GQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-QTL-TGHSSSVWGVAF 352 (577)
T ss_dssp -----------------SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-EEE-CCCSSCEEEEEE
T ss_pred -----------------CcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-EEE-eCCCCCEEEEEE
Confidence 12335678999999999999999 6899999999999999876543 334 679999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 009022 223 NPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 302 (546)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 302 (546)
+|+ +.+|++++.||.|++|+. +++.+..+..+.. .|.+++|+|++++|++++.|+.|++||... +.
T Consensus 353 s~~-g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~---------~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~-- 418 (577)
T 2ymu_A 353 SPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS---------SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL-- 418 (577)
T ss_dssp CTT-SSEEEEEETTSEEEEEET-TCCEEEEEECCSS---------CEEEEEECTTSSCEEEEETTSEEEEECTTC-CE--
T ss_pred CCC-CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC---------CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE--
Confidence 999 999999999999999996 4566666655443 499999999999999999999999999643 22
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEE
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLR 381 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~ 381 (546)
......|...|++++|+| ++.+|++++.|+.|++||+.. ..+.. .+|...|++++|+|++++|++++.|+.|+
T Consensus 419 -~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 419 -LQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp -EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred -EEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 234456677999999999 999999999999999999742 23333 37999999999999999999999999999
Q ss_pred EEECCCCCCCCCCcceeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 460 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 460 (546)
+||.. +++.. .+..+ ..+.+++|+|+ |++++ +++.|+.|+|||. +++++..+.+|.
T Consensus 493 iw~~~-~~~~~---------~~~~h~~~v~~l~~s~d---------g~~l~---s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 493 LWNRN-GQLLQ---------TLTGHSSSVRGVAFSPD---------GQTIA---SASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEETT-SCEEE---------EEECCSSCEEEEEECTT---------SSCEE---EEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEcCC-CCEEE---------EEeCCCCCEEEEEEcCC---------CCEEE---EEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 99963 33211 11122 23357899998 77777 7899999999996 678888888876
Q ss_pred CCcccceeeecCCCcEEEEec-CCcEEEEc
Q 009022 461 ITTISPVNKLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 461 ~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd 489 (546)
..|.++ +|+|+|++|+|++ |++|++||
T Consensus 550 -~~v~~~-~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 -SSVWGV-AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -SCEEEE-EECTTSSCEEEEETTSCEEEEC
T ss_pred -CCEEEE-EEcCCCCEEEEEeCCCEEEEeC
Confidence 788888 9999999999999 99999997
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-37 Score=290.78 Aligned_cols=261 Identities=16% Similarity=0.193 Sum_probs=215.6
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|...|.+++|+|+ +.+|++++.||.|++||+.++..+..+..+.. .+.+++|+|++++|++|+.|+.|
T Consensus 10 ~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTET---------PVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSS---------CEEEEEEEGGGTEEEEEETTSEE
T ss_pred cCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCC---------cEEEEEEeCCCCEEEEECCCCEE
Confidence 689999999999999 99999999999999999999998888776544 49999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeC-CC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSP-SG 368 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p-~~ 368 (546)
++||+.+++... .+..|...|.+++|+| ++.+|++|+.|++|++||+++... .... .+|...|.+++|+| ++
T Consensus 80 ~vwd~~~~~~~~---~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 80 RVFNYNTGEKVV---DFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp EEEETTTCCEEE---EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE--EEEEECCCCSCEEEEEECTTCT
T ss_pred EEEECCCCcEEE---EEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc--hhhhhcccCCcEEEEEECCCCC
Confidence 999999876543 4556777999999999 999999999999999999975422 2222 37999999999999 68
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
.+|++|+.|++|++||+.++.... .... ........+.|.|... +.+++ +|+.|+.|+|||+.
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~----~~~~---~~~~~v~~~~~~~~~~-------~~~l~---s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNF----TLTT---GQERGVNYVDYYPLPD-------KPYMI---TASDDLTIKIWDYQ 216 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSE----EEEC---CCTTCEEEEEECCSTT-------CCEEE---EEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCCccc----eecc---CCcCcEEEEEEEEcCC-------CCEEE---EEcCCCeEEEEeCC
Confidence 999999999999999997654311 0100 1111223456666421 45666 78999999999999
Q ss_pred chhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEE
Q 009022 449 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKII 506 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i 506 (546)
+++++..+.+|. ..+..+ +|+|++++|++|+ ||+|+|||+.+++.+.++..+...+
T Consensus 217 ~~~~~~~~~~h~-~~v~~~-~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~ 273 (304)
T 2ynn_A 217 TKSCVATLEGHM-SNVSFA-VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273 (304)
T ss_dssp TTEEEEEEECCS-SCEEEE-EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSE
T ss_pred CCccceeeCCCC-CCEEEE-EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccE
Confidence 999999998886 677777 8999999999999 9999999999999999888775543
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-38 Score=305.11 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=234.8
Q ss_pred ccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 105 KMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
.+.+|.. +.+..+.+....+++++.+.++.+|+.... .....+.+|.+.|++++|+|++
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~- 162 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSG- 162 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTS-
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCC-
Confidence 4567884 445555555677888899999999975421 2236788999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
++|++|+.|++|+|||+.+......+ .+|...|.+++|+|+ +.+|++|+.|++|++||+.++..+..+..+..
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~----- 235 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE----- 235 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-----
Confidence 69999999999999999988777666 789999999999999 99999999999999999999999888876543
Q ss_pred CcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC-------------------C
Q 009022 264 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ-------------------P 324 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-------------------~ 324 (546)
.|.++.|+|++.+|++|+.|+.|++||+.+..... ....|...|.+++|+|.. +
T Consensus 236 ----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 236 ----WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp ----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred ----cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 48999999999999999999999999998865432 345666789999999821 5
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
.+|++|+.|+.|++||++++.. +.. .+|...|++++|+|++.+|++|+.||.|++||+.++++... ...
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~----~~~--- 378 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMC---LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNA--- 378 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE----EEC---
T ss_pred CEEEEEeCCCeEEEEECCCCce---EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE----EcC---
Confidence 6899999999999999986543 333 37999999999999999999999999999999987765321 111
Q ss_pred cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 404 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 404 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+.....+++|+|+ +.+++ +|+.|++|+||+++
T Consensus 379 -h~~~v~~l~~~~~---------~~~l~---sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 379 -HEHFVTSLDFHKT---------APYVV---TGSVDQTVKVWECR 410 (410)
T ss_dssp -CSSCEEEEEECSS---------SSCEE---EEETTSEEEEEC--
T ss_pred -CCCcEEEEEEcCC---------CCEEE---EEeCCCcEEEEeCC
Confidence 1123457899998 66777 89999999999863
No 26
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=299.70 Aligned_cols=303 Identities=12% Similarity=0.138 Sum_probs=235.4
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcC---CCcEEEEeCCCCceeEEecccCCCceEEEEEecCC--CCEEEEEeCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSD 236 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d 236 (546)
..+.+.+|...|++++|+|++..++++|+. |+.|+||++.++.........|...|.+++|+|+. +.+|++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 345678899999999999999777788887 99999999998877666545799999999999984 5899999999
Q ss_pred CeEEEEECCCCc-eeeeeecCCCCCCCCCcccceEEEE------ecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec
Q 009022 237 GTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMD------INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR 309 (546)
Q Consensus 237 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 309 (546)
|.|++||+.++. .+..+..+.. .|.++. |+|++++|++++.+|.|++||+.+.......+..+.
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKE---------IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSS---------CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred CeEEEEeCCCCCccEEEEEeccc---------ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence 999999999887 6666654443 488884 578999999999999999999998763332222222
Q ss_pred C--CCcEEEEE----ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC---CCCEEEEEeCCCcE
Q 009022 310 K--GSKVVGLH----CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP---SGSKILTTSQDNRL 380 (546)
Q Consensus 310 ~--~~~i~~~~----~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~s~s~dg~i 380 (546)
. ...+.+++ |+| ++.+|++++.+|.|++||+++... .....|...|.+++|+| ++.+|++++.||.|
T Consensus 161 ~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL---RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred CCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce---eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 1 33788888 678 899999999999999999976443 33456889999999999 99999999999999
Q ss_pred EEEECCCCCCCCCCcceeeccCC-cccCCceeEEecCCCCCCceeEEee-eeeecCCCCcCcceEEEECCchh-------
Q 009022 381 RIWDSIFGNLDSPSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQ------- 451 (546)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~~d~~i~iwd~~~~~------- 451 (546)
++||+++++........ .. ........+.|+|+ +. +++ +|+.|+.|++||+.++.
T Consensus 237 ~i~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~---------~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASV----SEKAHKSTVWQVRHLPQ---------NRELFL---TAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEEEEEEETTTEEEEE----EEECCSSCEEEEEEETT---------EEEEEE---EEETTSEEEEEEEECCSCC--CCT
T ss_pred EEEeCcCCCcccceeee----ccCCCcCCEEEEEECCC---------CCcEEE---EEeCCCcEEEeecCCCcccccccC
Confidence 99999876653321100 11 12223457889998 66 666 78999999999997643
Q ss_pred ------------hhHhhcCCCCCcccceeeecCCCcEEE-Eec-CCcEEEEcCCCCCc
Q 009022 452 ------------LVAEVMDPNITTISPVNKLHPRDDVLA-SGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 452 ------------~~~~~~~~~~~~i~~v~~~s~~~~~l~-sgs-dg~i~vwd~~~~~~ 495 (546)
.+..+.+|. ..+.++ +|+|++++|+ +|+ ||.|+||++.+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~-~~v~~~-~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLST-QPISSL-DWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCS-SCEEEE-EECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCccccccccceeeccccCC-CCeeEE-EEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 344555554 778888 9999999998 788 99999999987654
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=290.08 Aligned_cols=290 Identities=15% Similarity=0.197 Sum_probs=234.8
Q ss_pred eeccCCCccccccccccc-----cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEE
Q 009022 103 LCKMPGHTTMSCPHRVAT-----EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLE 177 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 177 (546)
.....+|...+......+ ...+++++.+.+.++|+..... ......+.+|...|.+++
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----------------~~~~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----------------LDLQWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-----------------EEEEEEECCCSSCEEEEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----------------eeeeeeeccCCCCEEEEE
Confidence 345567885444444332 3468899999999999754221 122356889999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
|+|++ .++++|+.|++|+|||+.+++....+ ..|...+.+++|+|+ +.+|++++.+|.|++|++.++.....+..+.
T Consensus 88 ~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 88 ISHTL-PIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp ECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred ECCCC-CEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 99999 68999999999999999998887777 578889999999999 9999999999999999999998877765543
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 337 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 337 (546)
. .+.+++|+|++++|++|+.||.|++||+++++... .+..+..+|.+++|+| ++.+|++|+.|+.|+
T Consensus 165 ~---------~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 165 K---------FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSP-DSQLLVTASDDGYIK 231 (321)
T ss_dssp S---------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred c---------eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcC-CCCEEEEEcCCCeEE
Confidence 3 48999999999999999999999999999875432 3455667899999999 999999999999999
Q ss_pred EEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc-cCCceeEEecC
Q 009022 338 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR-HLTPFRAEWDP 416 (546)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p 416 (546)
+||+++... .....+|...|.+++|+|++.+|++++.|++|++||+.+++++.. +.. ......++|+|
T Consensus 232 iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~---------~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 232 IYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT---------FFDHQDQVWGVKYNG 300 (321)
T ss_dssp EEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---------ECCCSSCEEEEEECT
T ss_pred EEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE---------EcCCCCcEEEEEECC
Confidence 999976443 222237999999999999999999999999999999987764221 111 22345789999
Q ss_pred CCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 417 KDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 417 ~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
+ |.+++ +++.|+.|+|||..
T Consensus 301 ~---------g~~l~---s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 301 N---------GSKIV---SVGDDQEIHIYDCP 320 (321)
T ss_dssp T---------SSEEE---EEETTCCEEEEECC
T ss_pred C---------CCEEE---EEeCCCeEEEEeCC
Confidence 8 77777 78999999999963
No 28
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=297.38 Aligned_cols=310 Identities=21% Similarity=0.337 Sum_probs=233.2
Q ss_pred eeeccccCCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCceeEEec------------ccCCCceEEEEEecCCCCE
Q 009022 163 CAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVSEKIVYG------------NIHSCIVNNIRFNPTNDGT 229 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~ 229 (546)
...+.+|.+.|++++|+| ++ ++|++|+.||.|+||++.+......+. .+|...|.+++|+|+++.+
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred eeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 456788999999999999 88 799999999999999998866544332 2599999999999954889
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeCCCcEEEEeCCCCCCCcceEE
Q 009022 230 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 306 (546)
|++++.||.|++||+.+++....+.... .+.++.|++. +.++++++.++.|++||++++.... .
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~ 181 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNFEE----------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH---I 181 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSS----------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE---E
T ss_pred EEEEeCCCeEEEeeCCCCccceeccCCC----------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee---e
Confidence 9999999999999999998887776432 4888888884 5599999999999999999876543 3
Q ss_pred eecCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCCCceee--------------ecCCCCcEEEEEEeCCCCEE
Q 009022 307 IHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLC--------------DLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 307 ~~~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~~p~~~~l 371 (546)
...+...|.+++|+| ++. +|++++.||.|++||+++........ ...|...|.+++|+|++++|
T Consensus 182 ~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 182 LQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp ECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred ecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 455667999999999 666 69999999999999998654211110 12588899999999999999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
++++.||.|++||+.+++.......... ..........+.+... +.++ .++.++.|++||+.+++
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKVC----NNSKKGLKFTVSCGCS-------SEFV----FVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCCC----CCCSSCCCCEECCSSS-------SCEE----EEEETTEEEEEETTTCC
T ss_pred EEecCCCeEEEEECCCCccceecccccc----ccccccceeEEecCCC-------ceEE----EEecCCEEEEEECcCCc
Confidence 9999999999999998775432211111 1111111222222111 1222 35667899999999999
Q ss_pred hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 452 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
.+..+.+|. ..+.++ +|+|++++|++|+ ||.|++|++.+++.+........
T Consensus 326 ~~~~~~~~~-~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 377 (408)
T 4a11_B 326 QITMLKGHY-KTVDCC-VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT 377 (408)
T ss_dssp EEEEECCCS-SCEEEE-EEETTTTEEEEEETTSCEEEEEECC------------
T ss_pred ceeeeccCC-CeEEEE-EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe
Confidence 999887776 778888 9999999999999 99999999999988776655443
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=289.77 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=199.6
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe---cccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY---GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
...|...|++++|+|++ .|++|+.||+|+|||+.+++..... ..+|...|++|+|+|+ +++|++|+.|++|++|
T Consensus 78 ~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred eeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEE
Confidence 34577899999999986 5889999999999999987654432 2579999999999999 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|+.+++.+..+..|.. .|.+++|++++. +|++++.|+.|++||+++++....+ ....+...+.+++|+|
T Consensus 155 d~~~~~~~~~~~~h~~---------~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 155 DLAQQVVLSSYRAHAA---------QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHP 224 (344)
T ss_dssp ETTTTEEEEEECCCSS---------CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECS
T ss_pred ECCCCcEEEEEcCcCC---------ceEEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeeecC
Confidence 9999999988876554 599999999875 7889999999999999987765432 2234445799999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
.++.+|++|+.||.|+|||+++.+....+ .+|...|++++|+|++ ++|++|+.|++|+|||+.++++.. .
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-------~ 295 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-------S 295 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--CCEEE--ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-------E
T ss_pred CCCcceEEeccCCcEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-------E
Confidence 67789999999999999999876553332 3799999999999987 689999999999999998776421 1
Q ss_pred cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh
Q 009022 401 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 452 (546)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~ 452 (546)
. .+......++|+|+. ..+++ +++.|++|++|++.+...
T Consensus 296 ~--~H~~~V~~v~~sp~~--------~~lla---s~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 296 Q--AHRDFVRDATWSPLN--------HSLLT---TVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp C--CCSSCEEEEEECSSS--------TTEEE---EEETTSCEEEEECCC---
T ss_pred c--CCCCCEEEEEEeCCC--------CeEEE---EEcCCCeEEEEECCCCCC
Confidence 1 112234578999983 12344 688999999999987543
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-36 Score=288.56 Aligned_cols=284 Identities=13% Similarity=0.183 Sum_probs=229.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe----cccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY----GNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
....+|...|++++|+|++ ++|++++ ||.|+||++.+......+ ...|...|.+++|+|+ +++|++++.||.|
T Consensus 45 ~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 121 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTL 121 (337)
T ss_dssp EEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEE
T ss_pred ceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcE
Confidence 3445799999999999999 7899998 999999999876432221 1268999999999999 9999999999999
Q ss_pred EEEECCCCce--eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 240 SCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 240 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
++|++.+++. ...+..+.. .+.+++|+|++++|++++.+|.|++||+++++... ....+...+.++
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~ 189 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSAP---------ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCI 189 (337)
T ss_dssp EEEECCCC--EEEEEEECSSS---------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEE
T ss_pred EEEECCCCCcceeeecccCCC---------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee---eeecccCceEEE
Confidence 9999998873 333333322 49999999999999999999999999998865432 344566789999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
+|+| ++.+|++++.||.|++||+++.+ .+....+...+.+++|+|++.+|++++.++.|++||+.+++..
T Consensus 190 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~------ 259 (337)
T 1gxr_A 190 DISN-DGTKLWTGGLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY------ 259 (337)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE------
T ss_pred EECC-CCCEEEEEecCCcEEEEECCCCc---eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE------
Confidence 9999 99999999999999999997644 3444567888999999999999999999999999999876531
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEE
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL 477 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l 477 (546)
.. .........+.|+|+ |++++ +++.++.|++|++.+++.+... . +...+.++ +|+|++++|
T Consensus 260 -~~--~~~~~~v~~~~~~~~---------~~~l~---~~~~dg~i~~~~~~~~~~~~~~-~-~~~~v~~~-~~s~~~~~l 321 (337)
T 1gxr_A 260 -QL--HLHESCVLSLKFAYC---------GKWFV---STGKDNLLNAWRTPYGASIFQS-K-ESSSVLSC-DISVDDKYI 321 (337)
T ss_dssp -EE--CCCSSCEEEEEECTT---------SSEEE---EEETTSEEEEEETTTCCEEEEE-E-CSSCEEEE-EECTTSCEE
T ss_pred -EE--cCCccceeEEEECCC---------CCEEE---EecCCCcEEEEECCCCeEEEEe-c-CCCcEEEE-EECCCCCEE
Confidence 11 111223457899998 66676 7888999999999998877443 2 33677777 899999999
Q ss_pred EEec-CCcEEEEcC
Q 009022 478 ASGS-SRSIFIWRP 490 (546)
Q Consensus 478 ~sgs-dg~i~vwd~ 490 (546)
++++ ||.|++|++
T Consensus 322 ~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 9999 999999996
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.4e-37 Score=295.40 Aligned_cols=298 Identities=12% Similarity=0.118 Sum_probs=233.7
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.+..|.++|++++|+|++ ++|++|+.|+.|+||++.+.. ....+ .+|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 355699999999999999 799999999999999998876 55555 689999999999998 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE-eecCCCcEEEEEECC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNP 321 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~p 321 (546)
|+.+++....+..... ...|.+++|+|++++|++++.++.|++||+........... ...+...|.+++|+|
T Consensus 80 d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRI-------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEETTEEEEEEECCCC-------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred ECCCCeeeeeEEeecC-------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 9998876555433211 12599999999999999999999999999988664222222 234567899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC---------------CCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 322 IQPELLLSCGNDHFARIWDIRRL---------------EAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
++.+|++++.||.|++||++.. .....+..+ .|...|.+++|+|++.+|++++.|+.|++||+
T Consensus 153 -~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 153 -NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp -TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred -CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999997521 123344444 78899999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc--hh------------
Q 009022 386 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--GQ------------ 451 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~--~~------------ 451 (546)
.+++.... .. ........++|+|+ |.+++ +| .++.|++|++.+ +.
T Consensus 232 ~~~~~~~~----~~----~~~~~v~~~~~~~~---------~~~l~---~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 232 DKKMAVAT----LA----SETLPLLAVTFITE---------SSLVA---AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp GGTTEEEE----EE----CSSCCEEEEEEEET---------TEEEE---EE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred CCCceeEE----Ec----cCCCCeEEEEEecC---------CCEEE---EE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 88764221 11 11123357889987 67776 45 899999999987 42
Q ss_pred ----------hh----------------HhhcCCCCCcccceeeec-CCC---cEEEEec-CCcEEEEcCCCCCc
Q 009022 452 ----------LV----------------AEVMDPNITTISPVNKLH-PRD---DVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 452 ----------~~----------------~~~~~~~~~~i~~v~~~s-~~~---~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
.. ..+...|...|.++ +|. ++| .+|++|+ ||.|+||++.+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI-SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEE-EEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCccee-EEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 11 22332344788888 655 777 9999999 99999999987654
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-37 Score=299.66 Aligned_cols=307 Identities=12% Similarity=0.153 Sum_probs=236.8
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc------eeEEecccCCCceEEEEEecC---CC---CE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPT---ND---GT 229 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~---~~---~~ 229 (546)
....+.+|.+.|++|+|+| .+|++|+.||.|+||++.+.. ....+ .+|...|.+++|+|+ ++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence 4567889999999999998 489999999999999999876 45555 589999999999996 35 79
Q ss_pred EEEEeCCCeEEEEECCCCce-----eeeeecCCCCCCCCCcccceEEEEec----CCCCE-EEEEeCCCcEEEEeCCC--
Q 009022 230 VYAASSDGTVSCTDLETGLA-----LSLMNVNPNGWHGPRTWRMLYGMDIN----PEKGV-VLVADNFGFLYLVDART-- 297 (546)
Q Consensus 230 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~-- 297 (546)
|++++.||.|++|++.++.. ...+..+.. +.....|.+++|+ |++.+ |++++.+|.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDS----DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCT----TGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeeccccc----ccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999998876 555544320 0001259999999 99999 99999999999999988
Q ss_pred ----CCCCc--c--eEEe-----ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-C---C---CC
Q 009022 298 ----NSRSG--E--AILI-----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-P---H---KR 357 (546)
Q Consensus 298 ----~~~~~--~--~~~~-----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~---~---~~ 357 (546)
..... . .+.. ..+...|.+++|+| ++ +|++++.+|.|++||+++... +..+ . | ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRP---LYNFESQHSMINNSN 234 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEE---EEEEECCC---CCCC
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCce---eEEEeccccccccCC
Confidence 54433 0 1122 34566899999999 88 999999999999999986443 3333 4 7 89
Q ss_pred cEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCCCCCCCccee-----eccCCcccCCceeEEecCCCCCCceeEEeee
Q 009022 358 VVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIV-----HSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 429 (546)
Q Consensus 358 ~v~~~~~~p~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~ 429 (546)
.|.+++|+|++.+|++++.| +.|++||+.+++......... ....+........+.|+|+ +.+
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~ 305 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---------GET 305 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS---------SSE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC---------CCE
Confidence 99999999999999999999 999999998876422111000 0000002233467899997 677
Q ss_pred eeecCCCCcCcceEEEECCchhhhHhhc------CC--------------CCCcccceeeecCCC----------cEEEE
Q 009022 430 ISENYNGAALHPIDFIDITTGQLVAEVM------DP--------------NITTISPVNKLHPRD----------DVLAS 479 (546)
Q Consensus 430 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~------~~--------------~~~~i~~v~~~s~~~----------~~l~s 479 (546)
++ +++.|+.|+|||+.+++.+..+. +| +...+.++ +|+|++ ++|++
T Consensus 306 l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 306 LC---SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV-KFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp EE---EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE-EEECTTTSBSTTCTTSCEEEE
T ss_pred EE---EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE-EeccccccccccccccceEEE
Confidence 77 78899999999999999988887 55 14778888 999998 79999
Q ss_pred ec-CCcEEEEcCCCCC
Q 009022 480 GS-SRSIFIWRPKEKS 494 (546)
Q Consensus 480 gs-dg~i~vwd~~~~~ 494 (546)
|+ ||.|+||++.+|+
T Consensus 382 ~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 382 VCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTEEEEEEEEC--
T ss_pred ecCCCcEEEEEcCCCC
Confidence 99 9999999998764
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-37 Score=300.87 Aligned_cols=295 Identities=12% Similarity=0.161 Sum_probs=226.0
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC----CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.|...|++++|+|++ .+|++|+.||.|+||++.. ......+ .+|...|.+++|+|+++.+|++++.||.|++||
T Consensus 65 ~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred ecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 588999999999999 6899999999999999987 2344444 789999999999998678999999999999999
Q ss_pred CCCCc------eeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeec----CCC
Q 009022 244 LETGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHR----KGS 312 (546)
Q Consensus 244 ~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~ 312 (546)
+.++. ....+.. ...+...|.+++|+|+ +.+|++++.+|.|++||+++++..... ..+. +..
T Consensus 143 ~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 215 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQ------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL-SYTSPNSGIKQ 215 (416)
T ss_dssp TTTTSSCTTTCCCBCCCC------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE-CCCCCSSCCCC
T ss_pred CCCCcccccccccccccc------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE-eccccccccCC
Confidence 99876 2222100 0111235899999999 789999999999999999986543322 1111 156
Q ss_pred cEEEEEECCCCCCEEEEEeCCC---eEEEEECCCCCCCceeeec-CCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 009022 313 KVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.|.+++|+|....+|++++.++ .|++||+++...... ... +|...|.+++|+| ++.+|++++.||.|++||+.+
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ-TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB-CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE-EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 8999999993347999999998 999999987532211 122 5899999999999 999999999999999999988
Q ss_pred CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEe-eeeeecCCCCcCcceEEEECCchhhhHhhcC--------
Q 009022 388 GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIG-RYISENYNGAALHPIDFIDITTGQLVAEVMD-------- 458 (546)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-------- 458 (546)
++.+.. .. ........++|+|+ + .+++ +++.|+.|+||++.++........
T Consensus 295 ~~~~~~----~~----~~~~~v~~~~~s~~---------~~~~l~---s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 295 AEQLSQ----FP----ARGNWCFKTKFAPE---------APDLFA---CASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp CCEEEE----EE----CSSSCCCCEEECTT---------CTTEEE---ECCSSSEEEEEESCCCCCSSCC----------
T ss_pred Ccccee----ec----CCCCceEEEEECCC---------CCCEEE---EEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 754221 11 11122357899998 5 5666 789999999999987654332211
Q ss_pred ------C--------------------CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 459 ------P--------------------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 459 ------~--------------------~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
+ +...+..+ +|+|+|++|++|+ |+.|+||++.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA-HWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCC-EEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccccCCccccCCccce-EEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0 22445566 8999999999999 999999999864
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.8e-37 Score=287.30 Aligned_cols=301 Identities=14% Similarity=0.142 Sum_probs=232.1
Q ss_pred eeccCCCccccccccccc-c-CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMSCPHRVAT-E-YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
...+.+|+..+......+ . ..+++++.+.+..+|+...... ....++..+.+|...|++++|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------------KFGVPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--------------EEEEEEEEEECCSSCEEEEEECT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--------------cccccceEEeCCcccEEEEEECC
Confidence 456788995554444443 3 5688999999999997542211 01234567899999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
++ ++|++|+.|++|+|||+.+++....+ .+|...|.+++|+|+ +.+|++++.|+.|++||+.. ..+..+..+..
T Consensus 76 dg-~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~-- 149 (319)
T 3frx_A 76 DG-AYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKG-QCLATLLGHND-- 149 (319)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETTS-CEEEEECCCSS--
T ss_pred CC-CEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC-CeEEEEeccCC--
Confidence 99 79999999999999999998887777 689999999999999 99999999999999999974 45555544332
Q ss_pred CCCCcccceEEEEecCC------CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 261 HGPRTWRMLYGMDINPE------KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.+.++.|.|. +..|++++.|+.|++||+++.... .....|...|.+++|+| ++.+|++|+.||
T Consensus 150 -------~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg 218 (319)
T 3frx_A 150 -------WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDG 218 (319)
T ss_dssp -------CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE---EEECCCCSCEEEEEECT-TSSEEEEEETTC
T ss_pred -------cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh---eeecCCCCcEEEEEEcC-CCCEEEEEeCCC
Confidence 4899999885 458999999999999999875432 23456777999999999 999999999999
Q ss_pred eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEe
Q 009022 335 FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 414 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (546)
.|++||+.+.+ .+..+.+...|.+++|+|++.+|++++.+ .+++|++..+.......................++|
T Consensus 219 ~i~iwd~~~~~---~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 219 EIMLWNLAAKK---AMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp EEEEEETTTTE---EEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred eEEEEECCCCc---EEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 99999997644 34444456789999999999999988754 599999876543221111000111111223457899
Q ss_pred cCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 415 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
+|+ |++++ +|+.|+.|+||++.++
T Consensus 295 spd---------g~~l~---sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SAD---------GQTLF---AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTT---------SSEEE---EEETTSCEEEEEEEEC
T ss_pred CCC---------CCEEE---EeecCceEEEEEEeec
Confidence 998 88888 8999999999998764
No 35
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-35 Score=291.97 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=229.0
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
.++.|+|++++ +||+|. |++|+|||+.+++....+. .+|...|++|+|+|+ +.+|++|+.||.|++||+.+++.+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEE
Confidence 46789999864 677775 8999999999988766543 467889999999999 999999999999999999999998
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
..+..+.. .+.++++ ++.+|++|+.++.+++||........ .....|...+..+.++| ++.+++++
T Consensus 183 ~~~~~h~~---------~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~--~~~~~h~~~~~~~~~~~-~g~~l~s~ 248 (420)
T 4gga_A 183 RNMTSHSA---------RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAP-DGRHLASG 248 (420)
T ss_dssp EEECCCSS---------CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred EEEeCCCC---------ceEEEee--CCCEEEEEeCCCceeEeeecccceee--EEecccccceeeeeecC-CCCeeeee
Confidence 88766543 3666665 57899999999999999998765432 34455666899999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCc--eeeecCCCCcEEEEEEeCC-CCEEEEE--eCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 331 GNDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPS-GSKILTT--SQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~-~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
+.|+.|++|+..+..... ......|...|.+++|+|. ..+++++ +.|++|++||+.++++.. .+..
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~---------~~~~ 319 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---------AVDA 319 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE---------EEEC
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce---------eecc
Confidence 999999999998755432 2223378899999999994 5566554 579999999999876522 1222
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCc
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 484 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~ 484 (546)
+.....+.|+|.. ..++. .+|..|+.|+|||+.+++++..+.+|. ..|.++ +|+|+|++||||+ |++
T Consensus 320 ~~~v~~~~~~~~~---------~~lv~-~sg~~d~~I~iwd~~~~~~v~~l~gH~-~~V~~l-~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 320 HSQVCSILWSPHY---------KELIS-GHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSL-TMSPDGATVASAAADET 387 (420)
T ss_dssp SSCEEEEEEETTT---------TEEEE-EECTTTCCEEEEETTTCCEEEEECCCS-SCEEEE-EECTTSSCEEEEETTTE
T ss_pred ccceeeeeecCCC---------CeEEE-EEecCCCEEEEEECCCCcEEEEEcCCC-CCEEEE-EEcCCCCEEEEEecCCe
Confidence 3344678888873 22221 156789999999999999999998876 788888 9999999999999 999
Q ss_pred EEEEcCCCCCccceeecc
Q 009022 485 IFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 485 i~vwd~~~~~~~~~~~~~ 502 (546)
|+|||+.+..+......+
T Consensus 388 vriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 388 LRLWRCFELDPARRRERE 405 (420)
T ss_dssp EEEECCSCSSCC------
T ss_pred EEEEECCCCCccchhhhc
Confidence 999999877665555443
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.2e-36 Score=284.64 Aligned_cols=288 Identities=15% Similarity=0.135 Sum_probs=227.7
Q ss_pred eeccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.+|... .+..+.+....+++++.+.+..+|+... ...+..+..|...|.+++|+|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-------------------~~~~~~~~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-------------------TNKVHAIPLRSSWVMTCAYAPS 108 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-------------------CCEEEEEECSSSCEEEEEECTT
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------CCcceEeecCCccEEEEEECCC
Confidence 3456788844 4444444456788889999999996432 1234567889999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc---eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPN 258 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 258 (546)
+ ++|++|+.|+.|+||++.+.. .......+|...|.++.|+++ + .|++++.|+.|++||+.+++.+..+..+..
T Consensus 109 ~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 G-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp S-SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred C-CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 9 799999999999999998753 222233689999999999986 4 599999999999999999998888765543
Q ss_pred CCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 259 GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 259 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
.|.+++|+|++.+|++|+.|+.|++||++++.... ....|...|.+++|+| ++.+|++|+.||+|++
T Consensus 186 ---------~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~i 252 (340)
T 1got_B 186 ---------DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFP-NGNAFATGSDDATCRL 252 (340)
T ss_dssp ---------CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred ---------ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE---EEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEE
Confidence 49999999999999999999999999999865432 3456677899999999 9999999999999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPK 417 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~ 417 (546)
||+++......+....+...|++++|+|++++|++|+.|+.|++||+.+++... .+.++. ...+++|+|+
T Consensus 253 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~---------~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---------VLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---------EEECCSSCEEEEEECTT
T ss_pred EECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee---------EeecCCCcEEEEEEcCC
Confidence 999864432222111344579999999999999999999999999998765421 112222 3357899998
Q ss_pred CCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 418 DPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 418 ~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
|.+++ +|+.|+.|+|||
T Consensus 324 ---------g~~l~---s~s~D~~i~iWd 340 (340)
T 1got_B 324 ---------GMAVA---TGSWDSFLKIWN 340 (340)
T ss_dssp ---------SSCEE---EEETTSCEEEEC
T ss_pred ---------CCEEE---EEcCCccEEecC
Confidence 77777 899999999996
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=285.20 Aligned_cols=313 Identities=14% Similarity=0.178 Sum_probs=227.0
Q ss_pred eeccCCCcc-c-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 103 LCKMPGHTT-M-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
+..+.+|.. . ....+.+....+++++.+..+++|+....... .......+|...|++++|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp 71 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI----------------CKSVLSEGHQRTVRKVAWSP 71 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE----------------EEEEECSSCSSCEEEEEECT
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce----------------eeeeeccccCCcEEEEEECC
Confidence 445667764 3 34444455677888899999999974322110 01123468999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce---eeeeec
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNV 255 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~ 255 (546)
++ ++|++|+.|++|+||++.... ....+ .+|...|.+++|+|+ +++|++++.|+.|++||+.++.. +..+..
T Consensus 72 ~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 72 CG-NYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp TS-SEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CC-CEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99 799999999999999988764 33344 789999999999999 99999999999999999987643 233333
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 335 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 335 (546)
+.. .|.+++|+|++.+|++++.|+.|++|++...... .......|...|.+++|+| ++.+|++++.|++
T Consensus 149 h~~---------~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 149 HTQ---------DVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDP-SGQRLASCSDDRT 217 (345)
T ss_dssp CCS---------CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred cCC---------CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-EEEEecCCCCceEEEEECC-CCCEEEEEeCCCe
Confidence 322 5999999999999999999999999998765422 1224556777999999999 9999999999999
Q ss_pred EEEEECCCCCCCc------------eeeec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 336 ARIWDIRRLEAGS------------SLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 336 i~iwd~~~~~~~~------------~~~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
|+||+........ .+..+ .|...|.+++|+|++.+|++++.|+.|++|++..+............+
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9999974322211 12222 388899999999999999999999999999987654322111111111
Q ss_pred CCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhh
Q 009022 402 DFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 456 (546)
Q Consensus 402 ~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 456 (546)
....| ....+++|+|+. ..+++ +|+.|+.|++|++.+++.+..+
T Consensus 298 ~~~~h~~~V~~v~~~p~~--------~~~la---S~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKE--------PGLLA---SCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSSSSCEEEEEECSSS--------TTEEE---EEETTSCEEEEEECC-------
T ss_pred ecccccCcEeEeEEeCCC--------ceEEE---EcCCCCcEEEEEecCCCCcccc
Confidence 12222 234678999983 13566 7899999999999988766544
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=295.73 Aligned_cols=292 Identities=14% Similarity=0.210 Sum_probs=232.4
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (546)
.+|.+.|++++|+|++ ++|++|+.||.|+||+ .++.....+ ..|...|.+++|+|+ +.+|++++.||.|++||+.+
T Consensus 105 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDG-NSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp ---CBCEEEEEECTTS-SEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTT
T ss_pred cCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCC
Confidence 3478899999999999 7999999999999999 455555555 689999999999999 99999999999999999999
Q ss_pred CceeeeeecCCCCCCC------CCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 247 GLALSLMNVNPNGWHG------PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
++.+..+..+...... ......+.+++|+++ ..+++++.+|.|++||+.+..... ....+...|.+++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTG---KLIGHHGPISVLEFN 256 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSE---EECCCSSCEEEEEEE
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceee---eeccCCCceEEEEEC
Confidence 9888877654331000 000011778889887 458899999999999999876543 334566689999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
| ++.+|++++.|+.|++||+++......+ ..|...|.+++|+|++ +|++++.|+.|++||+.+++.... ..
T Consensus 257 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----~~- 327 (425)
T 1r5m_A 257 D-TNKLLLSASDDGTLRIWHGGNGNSQNCF--YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL----SI- 327 (425)
T ss_dssp T-TTTEEEEEETTSCEEEECSSSBSCSEEE--CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE----EE-
T ss_pred C-CCCEEEEEcCCCEEEEEECCCCccceEe--cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe----cc-
Confidence 9 8999999999999999999875543332 3688999999999999 999999999999999987654211 11
Q ss_pred cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh--------------------hhHhhcCCC
Q 009022 401 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--------------------LVAEVMDPN 460 (546)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~--------------------~~~~~~~~~ 460 (546)
........+.|+|+ |.+++ +++.++.|++|++.++. .+..+.+|.
T Consensus 328 ---~~~~~i~~~~~s~~---------~~~l~---~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (425)
T 1r5m_A 328 ---VDGVPIFAGRISQD---------GQKYA---VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392 (425)
T ss_dssp ---CTTCCEEEEEECTT---------SSEEE---EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT
T ss_pred ---cCCccEEEEEEcCC---------CCEEE---EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc
Confidence 11223357889998 67777 78889999999999998 777887776
Q ss_pred CC-cccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 461 IT-TISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 461 ~~-~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
.. .+.++ +|+|++++|++|+ ||.|+||++.
T Consensus 393 ~~~~v~~~-~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 393 DNDYIFDL-SWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCCCEEEE-EECTTSSEEEEEESSSCCEEEECC
T ss_pred cCCceEEE-EccCCCceEEEEecCceEEEEeec
Confidence 44 78888 9999999999999 9999999985
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=278.67 Aligned_cols=295 Identities=13% Similarity=0.155 Sum_probs=231.5
Q ss_pred ceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 160 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 160 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
....+.+.+|.+.|++++| |++ .+|++|+.||.|+|||+.+......+ ..|...|.+++|+|+ +.+|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE-KELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT-TTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC-CCEEEEecCCCeE
Confidence 4566789999999999999 888 68999999999999999887766666 679999999999999 9999999999999
Q ss_pred EEEECCCCc---eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 240 SCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 240 ~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
++|++.... .+..+..+. ..|.+++| ++.++++++.+|.|++|| .. ........+...+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~---~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQ---------GNVCSLSF--QDGVVISGSWDKTAKVWK--EG---SLVYNLQAHNASVWD 147 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCS---------SCEEEEEE--ETTEEEEEETTSEEEEEE--TT---EEEEEEECCSSCEEE
T ss_pred EEEEeeecCCCCcccchhhcc---------cCEEEEEe--cCCEEEEEeCCCCEEEEc--CC---cEEEecccCCCceeE
Confidence 999987653 333333322 25889998 678999999999999999 22 223344556778999
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 394 (546)
+.|+|.++.+|++++.||.|++||.. .....+ .|...|.+++|+|++. |++++.||.|++||+.+++....
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~- 220 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT- 220 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETT-----EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-
T ss_pred EEEccCCCCEEEEEECCCCEEEEecC-----ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-
Confidence 99988788999999999999999953 122222 3889999999999988 99999999999999988764221
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
.. ........++|+|+ |. ++ +++.|+.|++||+.+++.+..+..|. ..+.++ +|+|++
T Consensus 221 ---~~----~~~~~i~~~~~~~~---------~~-l~---~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~-~~~~~~ 278 (313)
T 3odt_A 221 ---YE----GHESFVYCIKLLPN---------GD-IV---SCGEDRTVRIWSKENGSLKQVITLPA-ISIWSV-DCMSNG 278 (313)
T ss_dssp ---EE----CCSSCEEEEEECTT---------SC-EE---EEETTSEEEEECTTTCCEEEEEECSS-SCEEEE-EECTTS
T ss_pred ---hh----cCCceEEEEEEecC---------CC-EE---EEecCCEEEEEECCCCceeEEEeccC-ceEEEE-EEccCC
Confidence 11 11223457899997 42 33 57889999999999999988887775 678787 899999
Q ss_pred cEEEEecCCcEEEEcCCCCCccceeeccc
Q 009022 475 DVLASGSSRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 475 ~~l~sgsdg~i~vwd~~~~~~~~~~~~~~ 503 (546)
++++++.||.|++|++.+++.+.......
T Consensus 279 ~~~~~~~dg~i~iw~~~~~~~~~~~~~~~ 307 (313)
T 3odt_A 279 DIIVGSSDNLVRIFSQEKSRWASEDEIKG 307 (313)
T ss_dssp CEEEEETTSCEEEEESCGGGCCC------
T ss_pred CEEEEeCCCcEEEEeCCCCceeehhhhhh
Confidence 96654449999999999988766655443
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-37 Score=295.74 Aligned_cols=253 Identities=13% Similarity=0.133 Sum_probs=188.1
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC--ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
.+..|.++|++++|+|++ ++|++|+.|+.|+||++.+. .....+ .+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT-TCCEEEEETTSSEEEC
T ss_pred eEecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence 345578899999999999 69999999999999999987 444444 689999999999999 9999999999999999
Q ss_pred ECCCCc---eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec-CCCcEEEEE
Q 009022 243 DLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR-KGSKVVGLH 318 (546)
Q Consensus 243 d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~ 318 (546)
|+.++. ....+..+. ..|.+++|+|++++|++++.|+.|++||+++............ |...|.+++
T Consensus 83 d~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLN---------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ------CCCCEEECCCCS---------SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred EcCCCCceeeeeEecccC---------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 999877 333332222 2599999999999999999999999999998764322334444 677999999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCC---------------CCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLE---------------AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 383 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vw 383 (546)
|+| ++.+|++++.|+.|++||+.... ....+..++|...|++++|+|++++|++++.||.|++|
T Consensus 154 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 154 WHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp ECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999 99999999999999999986322 12233333789999999999999999999999999999
Q ss_pred ECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 384 DSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
|+.+++.... ....+..+. ...+++|+|+ |++++ +|+.++.+ +|+..
T Consensus 233 d~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~---------~~~l~---~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 233 YPSAPEQPPR-----ALITVKLSQLPLRSLLWANE---------SAIVA---AGYNYSPI-LLQGN 280 (377)
T ss_dssp EECSTTSCEE-----ECCCEECSSSCEEEEEEEET---------TEEEE---EESSSSEE-EECCC
T ss_pred ECCCCCCcce-----eeEeecCCCCceEEEEEcCC---------CCEEE---EEcCCcEE-EEEeC
Confidence 9998765110 011112222 2357889998 77776 56555555 66654
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.1e-36 Score=287.01 Aligned_cols=306 Identities=13% Similarity=0.163 Sum_probs=229.5
Q ss_pred eeccccCCCeEEEEEcCC---CCcEEEEEcCCCcEEEEeCCCCceeEEec----ccCCCceEEEEEecCC---CCEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPT---NNHILLSGDKKGQVGVWDFYKVSEKIVYG----NIHSCIVNNIRFNPTN---DGTVYAA 233 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~---~~~l~s~ 233 (546)
....+|.+.|++++|+|+ +..++++++.++.|+||++.++.....+. ..|...|.+++|+|+. +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345689999999999984 43566666667799999999776554442 2366889999999983 3489999
Q ss_pred eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC
Q 009022 234 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 312 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 312 (546)
+.||.|++||+.+++.+..+..+.. .|.+++|+| ++.+|++++.||.|++||+++++..........+..
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGN---------AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCS---------CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred cCCCEEEEEEchhceEeeeecCCCC---------cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 9999999999999998888765543 599999999 999999999999999999988654332211145677
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee-------------------------e-ecCCCCcEEEEEEeC
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-------------------------C-DLPHKRVVNSAYFSP 366 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------~-~~~~~~~v~~~~~~p 366 (546)
.|.+++|+| ++.+|++++.||.|++||+++......+ . ...|...|.+++|+
T Consensus 163 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 163 EVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred ceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 999999999 9999999999999999999754321111 0 11388999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCC----C-cceeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCc
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGNLDSP----S-REIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 440 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~~~~~----~-~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~ 440 (546)
+.+|++++.|+.|++||+.++..... . ........+..+ .....++|+|+.. |.+++ +|+.|+
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~l~---~~~~dg 309 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW-------QKMLA---LGNQVG 309 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT-------SSEEE---EECTTS
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC-------CcEEE---EEecCC
Confidence 78999999999999999987654110 0 000001111111 1123445555421 56666 789999
Q ss_pred ceEEEECCchhhhH----hhcCCC-CCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 441 PIDFIDITTGQLVA----EVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 441 ~i~iwd~~~~~~~~----~~~~~~-~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
.|++||+.+++... .+.+|. ...+.++ +|+|++++|++|+ ||.|+|||+.+
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT-SFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEECCCCCCccccceEEcccccCCceEEE-EeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999987665 555552 4778888 9999999999999 99999999853
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.5e-35 Score=274.78 Aligned_cols=257 Identities=16% Similarity=0.189 Sum_probs=199.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC--ceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVS 240 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~ 240 (546)
.++.+|.+.|++++|+|+| ++||+|+.|++|+||++... .....+ .+|..+|.+++|+|. .+.+|++|+.|++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4678999999999999999 78999999999999999753 444555 789999999999863 278999999999999
Q ss_pred EEECCCCce--eeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 241 CTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 241 iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+||+.++.. +..+..+.. .|.+++|+|+ +.+|++++.|+.|++||++...... ......|...|.+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~---------~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSA---------SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNS 150 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSS---------CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEE
T ss_pred EEEcCCCceEEEEEeecCCC---------ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccce
Confidence 999988743 333332222 5999999997 8999999999999999998764322 2345566778999
Q ss_pred EEECCCC------------CCEEEEEeCCCeEEEEECCCCCCCc-eeeec-CCCCcEEEEEEeCCC---CEEEEEeCCCc
Q 009022 317 LHCNPIQ------------PELLLSCGNDHFARIWDIRRLEAGS-SLCDL-PHKRVVNSAYFSPSG---SKILTTSQDNR 379 (546)
Q Consensus 317 ~~~~p~~------------~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~-~~~~~v~~~~~~p~~---~~l~s~s~dg~ 379 (546)
++|+|.. +.+|++|+.|++|++||+++..... ....+ +|...|.+++|+|++ .+|++++.|++
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 9999931 5699999999999999997644211 22233 799999999999984 89999999999
Q ss_pred EEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 380 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
|+|||+.+..... . .. + + ....+
T Consensus 231 v~iWd~~~~~~~~------------------~---------------~~---------------~--------~-~~~~~ 253 (297)
T 2pm7_B 231 CIIWTQDNEQGPW------------------K---------------KT---------------L--------L-KEEKF 253 (297)
T ss_dssp EEEEEESSTTSCC------------------E---------------EE---------------E--------S-SSSCC
T ss_pred EEEEEeCCCCCcc------------------c---------------ee---------------e--------e-ecccC
Confidence 9999986432100 0 00 0 0 00112
Q ss_pred CCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 460 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
...+.++ +|+|+|++||+|+ ||.|+||++.
T Consensus 254 -~~~v~~~-~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 254 -PDVLWRA-SWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -SSCEEEE-EECSSSCCEEEEETTSCEEEEEEC
T ss_pred -CCcEEEE-EECCCCCEEEEEcCCCcEEEEEEC
Confidence 2556677 9999999999999 9999999976
No 43
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-35 Score=284.30 Aligned_cols=308 Identities=17% Similarity=0.136 Sum_probs=220.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc----eeEEecccCCCceEEEEEecC-CCCEEEEEeCCCe
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGT 238 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~ 238 (546)
..+.+|.+.|++++|+|++ ++|++|+.||.|+||++.+.. ....+ .+|...|.+++|+|. ++.+|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 5678999999999999999 699999999999999998763 33333 679999999999993 2899999999999
Q ss_pred EEEEECCCCc---------eeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEE-
Q 009022 239 VSCTDLETGL---------ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAIL- 306 (546)
Q Consensus 239 i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 306 (546)
|++||+.++. .+..+..+.. .|.+++|+|+ +.+|++++.||.|++||+++.........
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKG---------SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSS---------CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEecCCCcccccccCcceeeeecccCC---------ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 9999998873 3444433322 5999999999 99999999999999999998776543321
Q ss_pred ---------eecCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC----CEE
Q 009022 307 ---------IHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG----SKI 371 (546)
Q Consensus 307 ---------~~~~~~~i~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l 371 (546)
...+...+.+++|+|. ++.+|++++.++.+.+|+.............+|...|++++|+|++ .+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 1134568999999993 2899999999999988887654322222223799999999999998 899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
++++.||.|++||+..+............. ....+.+. ......+. ..+.....+.+|+..+++
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNS--------NMFDNSAD---VDMDAQGR-----SDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEETTSCEEEEEEEECC-------------------------------------------------------CCSEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccce--------eccCCCcc---cccccccc-----cccccceeeeeccccccc
Confidence 999999999999998764322111000000 00111111 11111111 134455667778887888
Q ss_pred hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceee
Q 009022 452 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQK 500 (546)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~ 500 (546)
.+..+.+|. ..+.++ +|+|++++|++|+ ||.|+||++.+++.+..+.
T Consensus 298 ~~~~~~~h~-~~v~~~-~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 298 LLSEHDDHN-GEVWSV-SWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEECTTS-SCEEEE-EECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEEEeccc-ccEEEE-EEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 888887776 778888 9999999999999 9999999999987665543
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=297.91 Aligned_cols=310 Identities=15% Similarity=0.190 Sum_probs=226.8
Q ss_pred Cceeeeec-cccCCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCC---Cc---eeEEecccCCCceEEEEEecCCCCEE
Q 009022 159 DQVNCAVI-RYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYK---VS---EKIVYGNIHSCIVNNIRFNPTNDGTV 230 (546)
Q Consensus 159 ~~~~~~~~-~~h~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~---~~---~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (546)
....+..+ .+|.+.|++++|+| ++ .+|++|+.||+|+|||+.+ .. ....+ .|...|.+++|+|+ +.+|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~-~~~l 126 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN-FDAF 126 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT-SSEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC-CCEE
Confidence 34455667 89999999999999 88 7999999999999999876 32 22232 59999999999998 9999
Q ss_pred EEEeCCCeEEEEECC---CCceeeeeecCCC---CCCCCCcccceEEEE--ecCCCCEEEEEeCCCcEEEEeCCCCCCCc
Q 009022 231 YAASSDGTVSCTDLE---TGLALSLMNVNPN---GWHGPRTWRMLYGMD--INPEKGVVLVADNFGFLYLVDARTNSRSG 302 (546)
Q Consensus 231 ~s~~~dg~i~iwd~~---~~~~~~~~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 302 (546)
++++.||.|++||+. +++.......+.. .+........+.++. +++++.+|++++.++.|++||+++++...
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999995 5554443332100 000000112355665 56889999999999999999999876543
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC----CCCEEEEEeCCC
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP----SGSKILTTSQDN 378 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~l~s~s~dg 378 (546)
.+ ....|...|++++|+| ++.+|++|+.||.|++||+++......+ .++|...|.+++|+| ++.+|++++.||
T Consensus 207 ~~-~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 207 II-ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSW-SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EE-ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEE-BCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EE-ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEE-ecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 22 2222556899999999 8999999999999999999864332221 126778999997765 577999999999
Q ss_pred cEEEEECCCCCCCCCCcce---eecc------------CCc---ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc
Q 009022 379 RLRIWDSIFGNLDSPSREI---VHSH------------DFN---RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 440 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~---~~~~------------~~~---~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~ 440 (546)
.|++||+.++++....... .... .+. ......+++|+ + +.+++ +|+.|+
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~---------~~~l~---s~~~d~ 350 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N---------DKILL---TDEATS 350 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T---------TEEEE---EEGGGT
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C---------ceEEE---ecCCCC
Confidence 9999999887642211100 0000 000 11112344555 2 56666 799999
Q ss_pred ceEEEECCchhhhHhhcCC------------------------------------CCCcccceeeecCC--CcEEEEec-
Q 009022 441 PIDFIDITTGQLVAEVMDP------------------------------------NITTISPVNKLHPR--DDVLASGS- 481 (546)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~------------------------------------~~~~i~~v~~~s~~--~~~l~sgs- 481 (546)
.|++||+.+++.+..+.+| |...|.++ +|+++ +.+|++|+
T Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i-~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 351 SIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI-STCEVDETPLLVACDN 429 (437)
T ss_dssp EEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE-EEEESSSSEEEEEEET
T ss_pred eEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE-eeeccCCceEEEEEcC
Confidence 9999999999988887764 55778888 88887 88999999
Q ss_pred CCcEEEEc
Q 009022 482 SRSIFIWR 489 (546)
Q Consensus 482 dg~i~vwd 489 (546)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=297.35 Aligned_cols=302 Identities=13% Similarity=0.226 Sum_probs=235.4
Q ss_pred cCCCeEEEEEcCCCCcEEEEE----------cCCCcEEEEeCCCCcee-EEecccCCCceEEEEEecCCCCEEEEEeCCC
Q 009022 169 HSRRVTCLEFHPTNNHILLSG----------DKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 237 (546)
+...|.+++|+|++..+|++| +.|+.|+||++.+.... ......|...|.+++|+|+ +.+|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN-NKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS-SSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC-CCeEEEEccCC
Confidence 445788999999985599999 89999999999887532 1111358899999999999 99999999999
Q ss_pred eEEEEECCC----CceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCC------CCcceEE
Q 009022 238 TVSCTDLET----GLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNS------RSGEAIL 306 (546)
Q Consensus 238 ~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~ 306 (546)
.|++|++.+ ...+..+..+.. .|.+++|+|+ +.+|++++.|+.|++||+.+.. .......
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSS---------SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSS---------CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEeecccccccccchhhccCCcc---------ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 999999987 335555544332 5999999998 8999999999999999999876 3222222
Q ss_pred eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec----CCCCcEEEEEEeCCC-CEEEEEeCCC---
Q 009022 307 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSG-SKILTTSQDN--- 378 (546)
Q Consensus 307 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~p~~-~~l~s~s~dg--- 378 (546)
...+...|.+++|+|..+.+|++++.||.|++||+++.+....+... +|...|.+++|+|++ .+|++++.++
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 34566789999999933889999999999999999865442222211 127889999999986 6899999998
Q ss_pred cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 379 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
.|++||++++.... . ............++|+|.+ +.+++ +++.|+.|++||+.+++.+..+.+
T Consensus 241 ~i~~~d~~~~~~~~--~----~~~~~~~~~v~~~~~s~~~--------~~~l~---s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 241 SILIWDLRNANTPL--Q----TLNQGHQKGILSLDWCHQD--------EHLLL---SSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp CCCEEETTSTTSCS--B----CCCSCCSSCEEEEEECSSC--------SSCEE---EEESSSEEEEECSSSCCEEEEEEC
T ss_pred eEEEEeCCCCCCCc--E----EeecCccCceeEEEeCCCC--------CCeEE---EEeCCCCEEEeeCCCCccceeecC
Confidence 99999998763211 0 0000122334678999932 66666 788899999999999999988887
Q ss_pred CCCCcccceeeecCCC-cEEEEec-CCcEEEEcCCCCCcccee
Q 009022 459 PNITTISPVNKLHPRD-DVLASGS-SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~-~~l~sgs-dg~i~vwd~~~~~~~~~~ 499 (546)
|. ..+.++ +|+|++ .+|++++ ||.|+||++.++......
T Consensus 304 ~~-~~v~~~-~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 304 RG-NWCFKT-KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp SS-SCCCCE-EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred CC-CceEEE-EECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 76 678888 999999 8999999 999999999987755443
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-35 Score=288.29 Aligned_cols=323 Identities=12% Similarity=0.073 Sum_probs=238.6
Q ss_pred cccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCc
Q 009022 115 PHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQ 194 (546)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~ 194 (546)
..+.+....+++++.+....+|+...... ...+..| ..+....|+|++ ++|++|+.||.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~ 120 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQM-RRFILGTTEGD 120 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSS-CEEEEEETTSC
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCC-CEEEEEECCCC
Confidence 34444556677777777777776432221 1223345 445555789998 78999999999
Q ss_pred EEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe
Q 009022 195 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 195 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 274 (546)
|+|||+.++.....+ .+|...|++++|+|+ +.+|++++.|+.|++||+.+++.+..+..+.. .|.+++|
T Consensus 121 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~---------~v~~~~~ 189 (420)
T 3vl1_A 121 IKVLDSNFNLQREID-QAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRA---------TVTDIAI 189 (420)
T ss_dssp EEEECTTSCEEEEET-TSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSS---------CEEEEEE
T ss_pred EEEEeCCCcceeeec-ccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC---------cEEEEEE
Confidence 999999987766655 689999999999999 99999999999999999999988887765543 4999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE---------------------EEEEECCCCCCEEEEEeCC
Q 009022 275 NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV---------------------VGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 275 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i---------------------~~~~~~p~~~~~l~~~~~d 333 (546)
+|++.+|++++.|+.|++||+++++..........+...+ .+++|+| ++.+|++|+.|
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 268 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVS 268 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETT
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCC
Confidence 9999999999999999999999876543221111222334 4455577 88899999999
Q ss_pred CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeE
Q 009022 334 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRA 412 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (546)
|.|++||+++......+ ...|...|.+++|+|++. +|++++.||.|++||+++++.. ...+. . .+..++..
T Consensus 269 g~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~-~----~~~~~v~~ 340 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFL-I----NEGTPINN 340 (420)
T ss_dssp SCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEE-E----STTSCEEE
T ss_pred CeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhh-c----cCCCCceE
Confidence 99999999865432222 125888999999999998 9999999999999999886531 11111 1 12223444
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhh---------HhhcCCCCCcccceeeecCCCc----EEEE
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV---------AEVMDPNITTISPVNKLHPRDD----VLAS 479 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~---------~~~~~~~~~~i~~v~~~s~~~~----~l~s 479 (546)
.+.|+ +.+++ +++.|+.|++|++...... ..+ ..+...+..+ +|+|++. ++++
T Consensus 341 ~~~~~---------~~~l~---s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~-~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 341 VYFAA---------GALFV---SSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQF-CYVSDDESNGEVLEV 406 (420)
T ss_dssp EEEET---------TEEEE---EETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEE-EEECCSSSSCEEEEE
T ss_pred EEeCC---------CCEEE---EecCCccEEEEeccCCCCCccceeccCccEE-ccCCcceEEE-EEccCCCCcceEEEE
Confidence 45554 55666 7899999999998874221 112 2334677777 8999998 5666
Q ss_pred ecCCcEEEEcCCC
Q 009022 480 GSSRSIFIWRPKE 492 (546)
Q Consensus 480 gsdg~i~vwd~~~ 492 (546)
|++|.+.+|++..
T Consensus 407 g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 407 GKNNFCALYNLSN 419 (420)
T ss_dssp ETTTEEEEEESCC
T ss_pred cCCceEEEEeccC
Confidence 6699999999864
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=329.90 Aligned_cols=356 Identities=17% Similarity=0.248 Sum_probs=274.6
Q ss_pred eccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCC
Q 009022 104 CKMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTN 182 (546)
Q Consensus 104 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 182 (546)
..+.+|.. +.+..+.+....+++++.+....+|+... ..++..+.+|...|.+++|+|++
T Consensus 651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------GKLVHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEEEECSSS
T ss_pred EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-------------------CceEEEEcCCCCcEEEEEEecCC
Confidence 34457774 44444444556778888888888886432 23456788999999999999953
Q ss_pred -CcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCC--
Q 009022 183 -NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNG-- 259 (546)
Q Consensus 183 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 259 (546)
..++++|+.|+.|++||+.++.....+ .+|...|++++|+|+ +.+|++++.||.|++||+.++.....+......
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 789 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred CceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence 258999999999999999999888777 689999999999999 999999999999999999988766554322100
Q ss_pred ----------------CC----------------------------CCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009022 260 ----------------WH----------------------------GPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 295 (546)
Q Consensus 260 ----------------~~----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 295 (546)
+. ...+...+.+++|+|++.++++++.+|.|++|++
T Consensus 790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869 (1249)
T ss_dssp ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence 00 0022346889999999999999999999999999
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-------------------------------
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL------------------------------- 344 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~------------------------------- 344 (546)
.++... .....|...|.+++|+| ++.+|++++.||.|++|++...
T Consensus 870 ~~~~~~---~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 870 DSRLKV---ADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp TTTEEE---EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred CCCcee---eecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 876543 24456667889999998 8888888888888888885320
Q ss_pred ---------------------------------------------CCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 345 ---------------------------------------------EAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 345 ---------------------------------------------~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
.....+.. .+|...|++++|+|++++|++++.||
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 1025 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC
Confidence 00111112 25888999999999999999999999
Q ss_pred cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 379 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
.|++||+.+++.... .........+.|+|+ +.++ +++.++.|++||+.+++.+..+.+
T Consensus 1026 ~i~vwd~~~~~~~~~---------~~~~~~v~~~~~~~~---------~~l~----~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A 1026 VIQVWNWQTGDYVFL---------QAHQETVKDFRLLQD---------SRLL----SWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp BEEEEETTTTEEECC---------BCCSSCEEEEEECSS---------SEEE----EEESSSEEEEEETTTTCCCEEEEC
T ss_pred EEEEEECCCCceEEE---------ecCCCcEEEEEEcCC---------CcEE----EEECCCcEEEEECCCCceeEEEcc
Confidence 999999988764321 112223346788885 4444 478899999999999999988887
Q ss_pred CCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 459 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
|. ..+.++ +|+|++++|++|+ ||.|++|++.+++.+..+.+|...+.+
T Consensus 1084 ~~-~~v~~~-~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~ 1132 (1249)
T 3sfz_A 1084 HQ-GTVLSC-AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1132 (1249)
T ss_dssp CS-SCCCCE-EECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEE
T ss_pred cC-CcEEEE-EECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEE
Confidence 76 678888 9999999999999 999999999999999998888765433
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.8e-35 Score=290.02 Aligned_cols=297 Identities=17% Similarity=0.226 Sum_probs=233.2
Q ss_pred eeeeccccCCCe-EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 162 NCAVIRYHSRRV-TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 162 ~~~~~~~h~~~V-~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
....+.+|...| .|+.|+ + .+|++|+.||+|++||+.+++....+ .+|...|.+++|+|+ + +|++|+.||.|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG-G-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST-T-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC-C-EEEEEeCCCCEE
Confidence 346789999885 677664 4 58999999999999999999888777 689999999999997 5 999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEec--CCCCEEEEEeCCCcEEEEeCCCCCCCcc---------------
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTNSRSGE--------------- 303 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------- 303 (546)
+||+.+++.+..+..+.. .|.+++|+ +++.++++++.||.|++||+.+......
T Consensus 187 vwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNS---------TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEETTTTEEEEEECCCSS---------CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEECCCCcEEEEECCCCC---------ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999998888765543 48999988 5789999999999999999988654321
Q ss_pred -----eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 304 -----AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 304 -----~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
......+...+.++. + ++.+|++|+.||.|++||+++.+. +..+ +|...|.+++|+|++++|++|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKC---LYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 223445556777774 4 679999999999999999976443 3333 799999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCcceeeccCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhh
Q 009022 378 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 456 (546)
Q Consensus 378 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 456 (546)
|.|++||+.+++.... +..+.. ...+.|+ +.+++ +|+.|+.|++||+.++.....+
T Consensus 332 g~i~vwd~~~~~~~~~---------~~~h~~~v~~~~~~-----------~~~l~---s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 332 TTIRIWDLENGELMYT---------LQGHTALVGLLRLS-----------DKFLV---SAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp SCEEEEETTTTEEEEE---------ECCCSSCEEEEEEC-----------SSEEE---EEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEECCCCcEEEE---------EeCCCCcEEEEEEc-----------CCEEE---EEeCCCcEEEEECCCCceeeee
Confidence 9999999988764221 111221 2344454 34555 7899999999999988765554
Q ss_pred cCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCCCccce-eeccceE
Q 009022 457 MDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVE-QKEEMKI 505 (546)
Q Consensus 457 ~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~~~~~-~~~~~~~ 505 (546)
. +...+..+ +|+|++++|++|+||.|+|||+.+++.+.. +..+...
T Consensus 389 ~--~~~~~~~~-~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 389 H--HTNLSAIT-TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ 435 (464)
T ss_dssp E--CTTCCCEE-EEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSE
T ss_pred c--CCCCccEE-EEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCc
Confidence 3 32334444 899999999999999999999999998875 4444443
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=291.87 Aligned_cols=296 Identities=12% Similarity=0.152 Sum_probs=232.9
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC----CCCc------eeEEecc---------cCCCceEEEEEecCCC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF----YKVS------EKIVYGN---------IHSCIVNNIRFNPTND 227 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~~~~---------~~~~~v~~~~~~~~~~ 227 (546)
..|.+.|++++|+|++..+||+|+.||.|+||++ .++. ....+.. +|...|++++|+|+ +
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-G 120 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-S
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-C
Confidence 3466999999999999339999999999999999 7776 3333321 16779999999999 9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe
Q 009022 228 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 307 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 307 (546)
.+|++++.||.|++|+ .++..+..+..+.. .|.+++|+|++++|++++.++.|++||+.++..... .
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~ 187 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRA---------PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH---F 187 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCS---------CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE---E
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCc---------cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE---e
Confidence 9999999999999999 56666666654433 599999999999999999999999999988654332 2
Q ss_pred ecCCCc---------------EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE
Q 009022 308 HRKGSK---------------VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 308 ~~~~~~---------------i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 372 (546)
..+... +.+++|+| + ..+++++.+|.|++||+++...... ...|...|.+++|+|++++|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGK--LIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp CCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEE--ECCCSSCEEEEEEETTTTEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeee--eccCCCceEEEEECCCCCEEE
Confidence 222223 88899998 5 5688899999999999987554322 236889999999999999999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh
Q 009022 373 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 452 (546)
Q Consensus 373 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~ 452 (546)
+++.|+.|++||+.+++.... .. ........+.|+|+ + +++ +++.++.|++||+.+++.
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~----~~----~~~~~i~~~~~~~~---------~-~l~---~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNC----FY----GHSQSIVSASWVGD---------D-KVI---SCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEE----EC----CCSSCEEEEEEETT---------T-EEE---EEETTSEEEEEETTTTEE
T ss_pred EEcCCCEEEEEECCCCccceE----ec----CCCccEEEEEECCC---------C-EEE---EEeCCCcEEEEECCCCcE
Confidence 999999999999988764321 10 11223357889997 4 444 678899999999999998
Q ss_pred hHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC--------------------ccceeeccc
Q 009022 453 VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS--------------------ELVEQKEEM 503 (546)
Q Consensus 453 ~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~--------------------~~~~~~~~~ 503 (546)
+..+..|. ..+.++ +|+|++++|++|+ ||.|+||++.++. .+..+..|.
T Consensus 323 ~~~~~~~~-~~i~~~-~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (425)
T 1r5m_A 323 LALSIVDG-VPIFAG-RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392 (425)
T ss_dssp EEEEECTT-CCEEEE-EECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT
T ss_pred eEecccCC-ccEEEE-EEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc
Confidence 88887765 677777 8999999999999 9999999999888 778887773
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-35 Score=287.16 Aligned_cols=295 Identities=16% Similarity=0.237 Sum_probs=227.2
Q ss_pred eccccCCC--eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 165 VIRYHSRR--VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 165 ~~~~h~~~--V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
...+|... +.+++|++. .+++++.|+.|+||++.++.....+...|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~~---~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNL---NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECTT---SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecCC---CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEE
Confidence 34467665 455666653 36778889999999999988877776668999999999998 9999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
|+.+++.+..+..+.. .|.+++| ++.+|++++.+|.|++||++..... ......|...|.+++|+|
T Consensus 162 d~~~~~~~~~~~~~~~---------~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~- 227 (401)
T 4aez_A 162 DVESQTKLRTMAGHQA---------RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ--IGTLQGHSSEVCGLAWRS- 227 (401)
T ss_dssp ETTTCCEEEEECCCSS---------CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECT-
T ss_pred ECcCCeEEEEecCCCC---------ceEEEEE--CCCEEEEEcCCCCEEEEecccCcce--eeEEcCCCCCeeEEEEcC-
Confidence 9999998888765443 4899999 5679999999999999999864432 234456677999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC-CEEEEEe--CCCcEEEEECCCCCCCCCCcceee
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTS--QDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
++.+|++|+.||.|++||+++... ......|...|.+++|+|++ .++++++ .|+.|++||+.+++....
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~------ 299 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT------ 299 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE------
T ss_pred CCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE------
Confidence 999999999999999999986443 22223789999999999965 5666654 799999999988764221
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh--hcCCCCCcccceeeecCCCcEE
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE--VMDPNITTISPVNKLHPRDDVL 477 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~--~~~~~~~~i~~v~~~s~~~~~l 477 (546)
+........++|+|+ |.+++.. +|..++.|+||++.++..... +.+|. ..+.++ +|+|++++|
T Consensus 300 ---~~~~~~v~~~~~s~~---------~~~l~~~-~g~~dg~i~v~~~~~~~~~~~~~~~~h~-~~v~~~-~~s~dg~~l 364 (401)
T 4aez_A 300 ---VDAGSQVTSLIWSPH---------SKEIMST-HGFPDNNLSIWSYSSSGLTKQVDIPAHD-TRVLYS-ALSPDGRIL 364 (401)
T ss_dssp ---EECSSCEEEEEECSS---------SSEEEEE-ECTTTCEEEEEEEETTEEEEEEEEECCS-SCCCEE-EECTTSSEE
T ss_pred ---EeCCCcEEEEEECCC---------CCeEEEE-eecCCCcEEEEecCCccceeEEEecCCC-CCEEEE-EECCCCCEE
Confidence 112233467899998 5555510 277899999999988655443 44554 778888 999999999
Q ss_pred EEec-CCcEEEEcCCCCCccceee
Q 009022 478 ASGS-SRSIFIWRPKEKSELVEQK 500 (546)
Q Consensus 478 ~sgs-dg~i~vwd~~~~~~~~~~~ 500 (546)
++|+ ||.|++|++.+++.+....
T Consensus 365 ~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 365 STAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECTTSEEEEEECCC--------
T ss_pred EEEeCCCcEEEEECCCCccccccc
Confidence 9999 9999999999998776543
No 51
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-36 Score=284.12 Aligned_cols=256 Identities=15% Similarity=0.154 Sum_probs=192.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--eEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVS 240 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~ 240 (546)
..+.+|.+.|++++|+|+| ++||+|+.|++|+|||+.++.. ...+ .+|...|.+++|+|. .+.+|++|+.|++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 4567999999999999999 7999999999999999987643 3334 789999999999752 378999999999999
Q ss_pred EEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 241 CTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 241 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+||+.++. ....+..+.. .|.+++|+|+ +.+|++|+.|+.|++|+++.............|...|.+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~---------~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDS---------SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EECCSSSCCCEEEEECCCSS---------CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEECCCCcceEEEEccCCCC---------ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99999874 3333333322 5999999998 789999999999999999875322111123345668999
Q ss_pred EEECCCC-----------------CCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCC----CEEEEE
Q 009022 317 LHCNPIQ-----------------PELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG----SKILTT 374 (546)
Q Consensus 317 ~~~~p~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~----~~l~s~ 374 (546)
++|+| + +.+|++|+.|+.|++||++.......+..+ +|...|.+++|+|++ .+|+++
T Consensus 156 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 156 VSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred EEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 99998 4 468999999999999999643222233333 799999999999986 899999
Q ss_pred eCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH
Q 009022 375 SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 454 (546)
Q Consensus 375 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~ 454 (546)
+.|++|++|++.+..... +. ..+
T Consensus 235 s~D~~v~iw~~~~~~~~~---------------------~~--------------------------~~~---------- 257 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNT---------------------WS--------------------------PKL---------- 257 (316)
T ss_dssp ETTCEEEEEECSSTTCCC---------------------CB--------------------------CCE----------
T ss_pred cCCCeEEEEEccCccccc---------------------hh--------------------------hhh----------
Confidence 999999999986421100 00 000
Q ss_pred hhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCC
Q 009022 455 EVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~ 491 (546)
+..| ...+.++ +|+|++++||+|+ |+.|+||+..
T Consensus 258 -~~~~-~~~v~~v-~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 258 -LHKF-NDVVWHV-SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -EEEC-SSCEEEE-EECTTTCCEEEEESSSCEEEEEEC
T ss_pred -hhcC-CCcEEEE-EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1112 2567777 9999999999999 9999999976
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-34 Score=275.87 Aligned_cols=306 Identities=14% Similarity=0.132 Sum_probs=224.6
Q ss_pred eccCCCccccccc-c-----cc-ccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEE
Q 009022 104 CKMPGHTTMSCPH-R-----VA-TEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCL 176 (546)
Q Consensus 104 ~~~~~~~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 176 (546)
..+.+|+..+... + .+ ....+++++.+.++++|+........ ........+.+|...|+++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------------~~~~~~~~l~~h~~~V~~~ 82 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------YFGIPHKALTGHNHFVSDL 82 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------------BSEEEEEEECCCSSCEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------------ccccccchhccCCCceEEE
Confidence 4556787443333 2 22 34568889999999999754221100 0123456789999999999
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
+|+|++ .+|++|+.|++|+|||+.++.....+ .+|...|.+++|+|+ +.+|++++.|+.|++||+...... .....
T Consensus 83 ~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~ 158 (343)
T 2xzm_R 83 ALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKF-SSAEK 158 (343)
T ss_dssp EECSST-TEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSS-TTEEEEEETTSCEEEEESSSCEEE-ECCTT
T ss_pred EECCCC-CEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCC-CCEEEEEcCCCEEEEEeccCCcee-eeecc
Confidence 999999 79999999999999999998887777 689999999999999 999999999999999999843322 22110
Q ss_pred CCCCCCCCcccceEEEEecCCC----------CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 257 PNGWHGPRTWRMLYGMDINPEK----------GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
..+...+.+++|+|++ .+|++++.|+.|++||... ........|...|.+++|+| ++.+
T Consensus 159 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~s~-~g~~ 227 (343)
T 2xzm_R 159 ------ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISP-NGKY 227 (343)
T ss_dssp ------TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEEECT-TSSE
T ss_pred ------cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEEECC-CCCE
Confidence 1112259999999987 7999999999999999432 12234556777999999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC--CCc--ceeeccC
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS--PSR--EIVHSHD 402 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~--~~~~~~~ 402 (546)
|++|+.||.|++||++.... ....+.+...|.+++|+|++.+|+++ .|+.|++|++.+++... ... .......
T Consensus 228 l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTY--PQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp EEEEETTCEEEEEESSCCSS--CSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred EEEEcCCCeEEEEECCCCcc--cceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 99999999999999954333 22223355679999999999887655 57889999998776432 100 0000000
Q ss_pred Cccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 403 FNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 403 ~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
...+ ....+++|+|+ |.+++ +|+.|+.|++|++.++.
T Consensus 305 ~~~~~~~v~~~~~sp~---------g~~l~---sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNAL---------GKKLF---AGFTDGVIRTFSFETSA 342 (343)
T ss_dssp BCCSCCCEEEEEECSS---------SCCEE---EEETTSEEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCC---------CCeEE---EecCCceEEEEEEEccC
Confidence 1112 23457899998 77777 78999999999987763
No 53
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=275.77 Aligned_cols=283 Identities=17% Similarity=0.237 Sum_probs=222.6
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
+++|+||+++ +||+|. |++|+|||+.+++....+. .+|...|++++|+|+ +++|++|+.||.|++|++.+++.+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEE
Confidence 5689999875 677765 8999999999988776652 468889999999999 9999999999999999999999988
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.+..+.. .+.+ +++++..+++++.++.+.+|+........ .....|...+..+.+.+ ++.+|++++
T Consensus 104 ~~~~h~~---------~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 104 NMTSHSA---------RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp EEECCSS---------CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred EecCccc---------eEEE--eecCCCEEEEEecCCceEeeecCCCceeE--EEEcCccCceEEEEEcC-CCCEEEEEe
Confidence 8876543 2444 55667899999999999999988765433 24455666899999999 999999999
Q ss_pred CCCeEEEEECCCCCCCc--eeeecCCCCcEEEEEEeCCCC-EE--EEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 332 NDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSGS-KI--LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~-~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
.|+.|++||+++.+... ......+...|.++.++|.+. .+ ++++.++.|++||........ .....
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~---------~~~~~ 240 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---------AVDAH 240 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE---------EEECS
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc---------cccce
Confidence 99999999998755432 222336888999999999554 33 456778999999987654311 11122
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcE
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 485 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i 485 (546)
.....+.|+|.. ..++. .+|+.|+.|+|||+.+++++.++.+|. ..|.++ +|+|+|++||||+ ||+|
T Consensus 241 ~~v~~~~~~~~~---------~~~~~-~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l-~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 241 SQVCSILWSPHY---------KELIS-GHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSL-TMSPDGATVASAAADETL 308 (318)
T ss_dssp SCEEEEEEETTT---------TEEEE-EECTTTCCEEEEETTTCCEEEEECCCS-SCEEEE-EECTTSSCEEEEETTTEE
T ss_pred eeeeeeeecccc---------cceEE-EEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEE-EEcCCCCEEEEEecCCeE
Confidence 223467788773 22211 157789999999999999999998876 788888 9999999999999 9999
Q ss_pred EEEcCCCCC
Q 009022 486 FIWRPKEKS 494 (546)
Q Consensus 486 ~vwd~~~~~ 494 (546)
+|||+.+..
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999997653
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-35 Score=282.38 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=196.6
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeE---EecccCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
....+|...|++++|+|++ + +++++.||+|+|||+.+++... ....+|...|++++|+|+ +++|++++.|+.|+
T Consensus 88 ~~~~~~~~~V~~~~~s~d~-~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~ 164 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEK-G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVK 164 (357)
T ss_dssp SEEEECSSCEEEEEEETTT-E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEE
T ss_pred cccCCCCCCEEEEEEcCCC-C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEE
Confidence 3456799999999999998 5 5567789999999998765432 222579999999999999 99999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
+||+.+++.+..+..+.. .|++++|++++. ++++++.|+.|++||+++++..... ....+...+.+++|
T Consensus 165 iwd~~~~~~~~~~~~h~~---------~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSS---------EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-DFCASDTIPTSVTW 234 (357)
T ss_dssp EEETTTTEEEEEECCCSS---------CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-CCTTCCSCEEEEEE
T ss_pred EEECCCCcEEEEEcCCCC---------CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-eeccccccccchhh
Confidence 999999999888866544 499999999875 7899999999999999987765432 33445568999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
+|..+.+|++|+.|+.|++||+++.+....+ .+|...|++++|+|++ ++|++|+.|++|+|||+.++++..
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~------ 306 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR------ 306 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE------
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE------
Confidence 9955789999999999999999876543322 3688999999999976 689999999999999998876422
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
. ..+......++|+|.+ +.+++ +++.|++|++|++.+..
T Consensus 307 -~--~~H~~~V~~vafsP~d--------~~~l~---s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 307 -D--LSHRDFVTGVAWSPLD--------HSKFT---TVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp -E--CCCSSCEEEEEECSSS--------TTEEE---EEETTSCEEEEECC---
T ss_pred -E--CCCCCCEEEEEEeCCC--------CCEEE---EEcCCCeEEEEECCCCC
Confidence 1 1222234578999953 55666 78999999999997643
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.7e-35 Score=282.46 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=213.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCC-------cEEEEeCCCCcee---------EEecccCCCceEEEEEecCCCCEEEEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKG-------QVGVWDFYKVSEK---------IVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
..+|+|++|+|++ ++|++|+.+. .|+||++...... ......|...|.++++. +..+++|
T Consensus 14 g~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEE
T ss_pred CCCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEE
Confidence 3489999999999 7999987543 5999998754321 11225688888888776 4567665
Q ss_pred e-----------CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCC
Q 009022 234 S-----------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSR 300 (546)
Q Consensus 234 ~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~ 300 (546)
. .|+.+++|++.+......................+.+++|+|+|+++++++ .|+.|++||+.++..
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4 477899999876543222111111111112222478999999999987654 689999999998765
Q ss_pred CcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC--
Q 009022 301 SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-- 378 (546)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-- 378 (546)
... ..+...|.+++|+| ++.+|++++. +.+++|+..+...........|...|.+++|+|++.++++++.++
T Consensus 170 ~~~----~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~ 243 (365)
T 4h5i_A 170 KFE----IETRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK 243 (365)
T ss_dssp EEE----EECSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred EEE----eCCCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence 432 23555899999999 9999999985 456677765544322222336888999999999999999999887
Q ss_pred --cEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh
Q 009022 379 --RLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 455 (546)
Q Consensus 379 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~ 455 (546)
.+++|++..+... ......+..+. ...+++|+|+ |++++ +|+.|++|+|||+.+++++.+
T Consensus 244 ~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spd---------g~~la---sgs~D~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 244 GIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMK---------GELAV---LASNDNSIALVKLKDLSMSKI 306 (365)
T ss_dssp CEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTT---------SCEEE---EEETTSCEEEEETTTTEEEEE
T ss_pred eeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCC---------CCceE---EEcCCCEEEEEECCCCcEEEE
Confidence 5888988654321 11112222222 2357899998 88888 899999999999999999988
Q ss_pred hcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 456 VMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 456 ~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
+...|...|.+| +|+|+|++||+|| |++|+||++...
T Consensus 307 ~~~gH~~~V~~v-~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 307 FKQAHSFAITEV-TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTSSSSCEEEE-EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ecCcccCCEEEE-EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 654445889998 9999999999999 999999999654
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-35 Score=329.04 Aligned_cols=346 Identities=17% Similarity=0.196 Sum_probs=270.2
Q ss_pred ccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 105 KMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
.+.+|... .+..+.+....+++++.++.+.+|+... ...+..+.+|.+.|++++|+|++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-------------------~~~~~~~~~h~~~v~~~~~s~~~- 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------------GEKLLDIKAHEDEVLCCAFSSDD- 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTS-
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------CCEEEEeccCCCCEEEEEEecCC-
Confidence 45678844 4444444556677778888888886432 23456788999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
++|++|+.|+.|+|||+.++.....+ .+|...|.+++|+|+ +..++++++.||.|++||+.++.....+..+..
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~---- 744 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN---- 744 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS----
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC----
Confidence 79999999999999999999888877 689999999999995 266899999999999999999998887765543
Q ss_pred CCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcce--------------------------------------
Q 009022 263 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-------------------------------------- 304 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------- 304 (546)
.|.+++|+|++.+|++++.||.|++||+.++......
T Consensus 745 -----~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 745 -----SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp -----CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred -----CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 5999999999999999999999999998765321110
Q ss_pred -------------E-EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE
Q 009022 305 -------------I-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 370 (546)
Q Consensus 305 -------------~-~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 370 (546)
. ....+...|.+++|+| ++.++++++.+|.|++||+.+... .....+|...|.+++|+|++.+
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce--eeecCCCccceEEEEECCCCCE
Confidence 0 0114556889999999 999999999999999999976433 2222379999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcce-------------------------eecc----CCcccCCceeEEecCCCCCC
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREI-------------------------VHSH----DFNRHLTPFRAEWDPKDPSE 421 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------------------~~~~----~~~~~~~~~~~~~~p~~~~~ 421 (546)
|++++.||.|++|++.+.......... .... .........+++|+|+
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---- 972 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH---- 972 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT----
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC----
Confidence 999999999999998643221110000 0000 0001112346778887
Q ss_pred ceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccc
Q 009022 422 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELV 497 (546)
Q Consensus 422 ~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~ 497 (546)
|.+++ +|+.+|.|++|++.+++.+..+.+|. ..+.++ +|+|+|++|++++ ||.|++|++.+++.+.
T Consensus 973 -----g~~l~---~g~~~g~i~i~d~~~~~~~~~~~~h~-~~v~~l-~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 973 -----LEYVA---FGDEDGAIKIIELPNNRVFSSGVGHK-KAVRHI-QFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp -----SSEEE---EEETTSCCEEEETTTTSCEEECCCCS-SCCCCE-EECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred -----CCEEE---EEcCCCCEEEEEcCCCceeeecccCC-CceEEE-EECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 67777 78899999999999999888887776 778888 9999999999999 9999999999887654
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.2e-36 Score=288.29 Aligned_cols=310 Identities=14% Similarity=0.143 Sum_probs=236.4
Q ss_pred CceeeeccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEE
Q 009022 99 KPCFLCKMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLE 177 (546)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 177 (546)
.......+.+|.. +.+..+.+....+++++.+.+.++|+... ......+.+|...|.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-------------------~~~~~~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-------------------SQKTHAIKLHCPWVMECA 115 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------TEEEEEEECCCTTCCCCE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------CccceEEecCCCCEEEEE
Confidence 4445567789994 45555555567889999999999997432 223467889999999999
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCc------eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
|+|+| ++|++|+.|+.|+||++.+.. .......+|...|.++.|+|+.+..|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g-~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNG-QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTS-SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCC-CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 99999 799999999999999987532 12223368999999999999866789999999999999999998887
Q ss_pred eeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.+..... ..+...|.+++|++ ++.+|++|+.|+.|++||++...... .....|...|.+++|+| ++.+|++|
T Consensus 195 ~~~~~~~----~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~--~~~~~h~~~v~~v~~~p-~~~~l~s~ 267 (380)
T 3iz6_a 195 IFGSEFP----SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV--RTYHGHEGDINSVKFFP-DGQRFGTG 267 (380)
T ss_dssp EECCCSS----SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC--EEECCCSSCCCEEEECT-TSSEEEEE
T ss_pred EeecccC----CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce--EEECCcCCCeEEEEEec-CCCeEEEE
Confidence 6632211 11223589999977 88999999999999999998543322 24556777999999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCceeeec-----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 331 GNDHFARIWDIRRLEAGSSLCDL-----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
+.||+|++||++++.....+... .+...|++++|+|++.+|++|+.||.|++||+.+++...... .....+
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~~~~h 343 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG----TLQNSH 343 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC----CSCSSC
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe----cccCCC
Confidence 99999999999875443222211 123358999999999999999999999999998766422111 000112
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
.....+++|+|+ |.+++ +|+.|+.|+||++...+
T Consensus 344 ~~~v~~l~~s~d---------g~~l~---sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 344 EGRISCLGLSSD---------GSALC---TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCEEEECSS---------SSEEE---EECTTSCEEEEECCSSS
T ss_pred CCceEEEEECCC---------CCEEE---EeeCCCCEEEEecCCCc
Confidence 223457899998 78887 89999999999987654
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=295.72 Aligned_cols=318 Identities=14% Similarity=0.104 Sum_probs=215.9
Q ss_pred CccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCC-----CcEEEEEcCCCcEEE
Q 009022 123 GVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTN-----NHILLSGDKKGQVGV 197 (546)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~l~s~~~d~~i~i 197 (546)
.+++++.+.++++|++..... . .....++.+|.+.|.+|+|+|++ ..+||+|+.||+|+|
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~----~-----------~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTL----H-----------CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp -------CEEEEEEEEETTTC----C-----------EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred hhccCCCCceEEEEEccCCCC----C-----------ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence 456667777777886422110 0 01124567789999999999971 258999999999999
Q ss_pred EeCCCCcee-----------EEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCCCCCCCCCc
Q 009022 198 WDFYKVSEK-----------IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRT 265 (546)
Q Consensus 198 wd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 265 (546)
||+...... ..+ .+|...|++++|+|+ ..|++|+.||+|++||+.++.. ...+..|..
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~------- 309 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS------- 309 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSS-------
T ss_pred EEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccc-------
Confidence 999765321 233 679999999999985 4899999999999999997643 333444433
Q ss_pred ccceEEE--EecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 266 WRMLYGM--DINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 266 ~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
.|.++ .|++++ .+|++++.|+.|++||+++++..... ..+.....|.+++|+| ++..|++++.|++|++||++
T Consensus 310 --~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~ 385 (524)
T 2j04_B 310 --YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-VSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSR 385 (524)
T ss_dssp --CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-EEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETT
T ss_pred --cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-ccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECc
Confidence 48988 578887 89999999999999999876554322 2333323588999999 88999999999999999998
Q ss_pred CCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCc
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 422 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 422 (546)
+......+ .+|...|++|+|+|++++|++|+.||+|++||+..+.+ ..... ..........+.++|+|+.
T Consensus 386 ~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-~~~~~---~~~~~~~~~v~~v~~sp~g---- 455 (524)
T 2j04_B 386 AAFAVHPL--VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-HGIKN---SSATQKSLRLWKWDYSIKD---- 455 (524)
T ss_dssp CTTCCEEE--EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-TCC---------CCCCEEEECBCCSSS----
T ss_pred ccccceee--ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-ccccc---CccceeeeEEEEeccCCCC----
Confidence 75543333 37999999999999999999999999999999865321 11000 0000111123467888873
Q ss_pred eeEEeeeeeecCCCCcCcceEEEECC-chhhhHhhcCCCCCcccceeeecCCCc---EEEEec-CCcEEEEcCCC
Q 009022 423 LAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRDD---VLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 423 ~~~~g~~~~~~~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~s~~~~---~l~sgs-dg~i~vwd~~~ 492 (546)
..+. .. ..+.+|... ++.++..+.+|. ..|.+| +|+|++. +||+|+ ||.|+||++.-
T Consensus 456 -----~~~~----~~--~~~~~~~~~~~g~~~~~l~gh~-~~V~~V-afsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 456 -----DKYR----ID--SSYEVYPLTVNDVSKAKIDAHG-INITCT-KWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -----CEEE----EC--CCCCCCC-------------CC-CSCCCE-EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred -----CeEE----cc--CCceecccccCCcceeeecCCC-ceEEEE-ECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2221 01 112333332 567777887776 788888 9999964 999999 89999999864
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.4e-35 Score=278.90 Aligned_cols=289 Identities=17% Similarity=0.208 Sum_probs=229.0
Q ss_pred eeccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.+|.. +.+..+.+....+++++.+.+..+|+... ....+.+..|...|.+++|+|+
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-------------------~~~~~~~~~~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-------------------TNKEHAVTMPCTWVMACAYAPS 117 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------CCEEEEEECSSSCCCEEEECTT
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------CCcceEEecCCCCEEEEEECCC
Confidence 345678884 45555555567789999999999997321 1223567779999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCC------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 009022 182 NNHILLSGDKKGQVGVWDFYKV------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 255 (546)
| .+|++|+.|+.+++|++... .....+ ..|...|.+++|+|+ +..|++++.|++|++||+.+++.+..+..
T Consensus 118 g-~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 118 G-CAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp S-SEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred C-CEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 9 79999999999999998643 122333 579999999999999 89999999999999999999999888876
Q ss_pred CCCCCCCCCcccceEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC
Q 009022 256 NPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 333 (546)
+.. .|.+++|+| ++.+|++|+.||.|++||+++++... ....|...|.+++|+| ++.+|++|+.|
T Consensus 195 h~~---------~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p-~~~~l~s~s~D 261 (354)
T 2pbi_B 195 HGA---------DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYP-SGDAFASGSDD 261 (354)
T ss_dssp CSS---------CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred CCC---------CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeC-CCCEEEEEeCC
Confidence 544 488888877 57899999999999999999876432 3456677999999999 99999999999
Q ss_pred CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEE
Q 009022 334 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAE 413 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (546)
++|++||++.......+....+...+.+++|+|++.+|++|+.|+.|++||+.+++.... . ..+.....+++
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~----l----~~h~~~v~~l~ 333 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI----L----FGHENRVSTLR 333 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE----E----CCCSSCEEEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE----E----ECCCCcEEEEE
Confidence 999999998654322222223445789999999999999999999999999987754211 1 11222345789
Q ss_pred ecCCCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 414 WDPKDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 414 ~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
|+|+ |.+++ +|+.|+.|+||+
T Consensus 334 ~spd---------g~~l~---sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPD---------GTAFC---SGSWDHTLRVWA 354 (354)
T ss_dssp ECTT---------SSCEE---EEETTSEEEEEC
T ss_pred ECCC---------CCEEE---EEcCCCCEEecC
Confidence 9998 77887 899999999995
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-34 Score=309.84 Aligned_cols=311 Identities=18% Similarity=0.223 Sum_probs=257.5
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
..+.+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.++.....+ .+|..+|.+++|+|+ +.+|++++.||.|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR-KNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG-GTEEEEEETTSEEEE
T ss_pred cceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC-CCEEEEEeCCCeEEE
Confidence 346789999999999999999 68999999999999999998887777 689999999999999 999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
|++.+++.+..+..+.. .|.+++|+|++.+|++++.+|.|++|++.++.... .....+...|.+++|+|
T Consensus 82 w~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPD---------YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE--EEEECCSSCEEEEEEET
T ss_pred EECCCCcEEEEEecCCC---------CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE--EEEcCCCCcEEEEEEEc
Confidence 99999998888866544 49999999999999999999999999998763332 23445666899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
.++..|++++.||.|++||+.+......+. ..+...|.+++|+| ++.+|++++.||.|++||+.+++....
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------ 223 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT------ 223 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE------
Confidence 667899999999999999997655433322 24558899999999 999999999999999999987653211
Q ss_pred ccCCccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc--E
Q 009022 400 SHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD--V 476 (546)
Q Consensus 400 ~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~--~ 476 (546)
+..+ .....++|+|+ |.+++ +++.|+.|++||+.+++.+..+..+. ..+.++ +|+|++. +
T Consensus 224 ---~~~~~~~v~~~~~~~~---------~~~l~---~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~~ 286 (814)
T 3mkq_A 224 ---LEGHMSNVSFAVFHPT---------LPIII---SGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCI-ATHPTGRKNY 286 (814)
T ss_dssp ---EECCSSCEEEEEECSS---------SSEEE---EEETTSCEEEEETTTCSEEEEECCSS-SSEEEE-EECTTCGGGE
T ss_pred ---EcCCCCCEEEEEEcCC---------CCEEE---EEeCCCeEEEEECCCCcEEEEeecCC-CcEEEE-EEccCCCceE
Confidence 1112 22357889998 66666 78899999999999999888887665 677777 8999987 5
Q ss_pred EEEecCCcEEEEcCCCCCccceeeccceEEEeec
Q 009022 477 LASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGK 510 (546)
Q Consensus 477 l~sgsdg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 510 (546)
+++++++.+.+|++..+.....+...+..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp EEEEETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECc
Confidence 6777799999999998887777776666665543
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=315.41 Aligned_cols=379 Identities=10% Similarity=0.048 Sum_probs=253.9
Q ss_pred ccCccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCc-cccccccccccCCccccCCCCCCCCchhhh
Q 009022 62 RKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHT-TMSCPHRVATEYGVTPASHRNAGNPVEYVF 140 (546)
Q Consensus 62 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (546)
..+...++++.|+++++|+..... .... ..|. .+.+..+.+ ...+++++.+.++.+|+...
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~~----------------~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQVE----------------VVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTCE----------------EEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred CCCCEEEEEeCCCEEEEEeCCCcE----------------EEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 345677888889999998643211 1111 1233 233334434 55688888999999997543
Q ss_pred hcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE----------ec
Q 009022 141 ERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV----------YG 210 (546)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------~~ 210 (546)
. .++..+. |.+.|++++|+|++ ++|++|+.||+|++||+.+...... ..
T Consensus 89 ~-------------------~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 89 Q-------------------KVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp C-------------------SEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred C-------------------cEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 2 1223443 77899999999999 7999999999999999988765311 12
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC---------CCCcccceEEEEecCCCCEE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH---------GPRTWRMLYGMDINPEKGVV 281 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l 281 (546)
.+|..+|.+++|+|+++..|++|+.||.| +||+++++.+..+..+...-. ...+...|++++|+|++.+|
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 56899999999999746799999999999 999999988877765410000 00112359999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCcc--eE--Eee-----------cCCCcEEEEEECCC---C-CCEEEEEe-----------
Q 009022 282 LVADNFGFLYLVDARTNSRSGE--AI--LIH-----------RKGSKVVGLHCNPI---Q-PELLLSCG----------- 331 (546)
Q Consensus 282 ~~~~~dg~i~i~d~~~~~~~~~--~~--~~~-----------~~~~~i~~~~~~p~---~-~~~l~~~~----------- 331 (546)
++++.||.|++||+++++.... +. ..+ .+...|++++|++. + +.+|++|+
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 9999999999999988654321 00 001 12235777777431 1 13444443
Q ss_pred -----------------------------------------------------------------CCCeEEEEECCCCCC
Q 009022 332 -----------------------------------------------------------------NDHFARIWDIRRLEA 346 (546)
Q Consensus 332 -----------------------------------------------------------------~dg~i~iwd~~~~~~ 346 (546)
.||.|++|++.++..
T Consensus 307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 344555555532211
Q ss_pred Cce-----eeecCCCCcEE----------------------------------EEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 347 GSS-----LCDLPHKRVVN----------------------------------SAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 347 ~~~-----~~~~~~~~~v~----------------------------------~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
... .....|...|+ +++|+|++++|++|+.|++|++||+.+
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 000 00001223344 445578899999999999999999998
Q ss_pred CCCCCCCcceeec----cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh------------
Q 009022 388 GNLDSPSREIVHS----HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ------------ 451 (546)
Q Consensus 388 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~------------ 451 (546)
+.+..+ ...... ........+.+++|+|+ |++++ +|+.|++|+||++.+++
T Consensus 467 g~~~~~-~~~~~~l~~~~~~~h~~~V~svafspd---------g~~LA---sgs~DgtV~lwd~~~~~~~~~~~~~~~~~ 533 (902)
T 2oaj_A 467 GDIQDN-ASFEVNLSRTLNKAKELAVDKISFAAE---------TLELA---VSIETGDVVLFKYEVNQFYSVENRPESGD 533 (902)
T ss_dssp CTTTTT-BCEEEEHHHHTTCSSSCCEEEEEEETT---------TTEEE---EEETTSCEEEEEEEECCC-----------
T ss_pred ccccCC-ceEEeechhhcCCCCCCceeEEEecCC---------CCeEE---EEecCcEEEEEEecCccccCccccCCCcc
Confidence 854221 100000 00122234568999998 88888 89999999999998763
Q ss_pred ---------------------------------hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 452 ---------------------------------LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 452 ---------------------------------~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
++..+.+|. ..|.++ +|||+| +||+|+ |++|+|||+.++..+
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~-~~V~sv-afSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 534 LEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK-GKTSAI-NNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp ----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS-CSEEEE-EECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred cceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC-CcEEEE-EecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 234455554 788888 899999 999999 999999999887654
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=288.60 Aligned_cols=300 Identities=15% Similarity=0.228 Sum_probs=217.8
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-----------eeEEecccCC------------CceEEEEEec
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----------EKIVYGNIHS------------CIVNNIRFNP 224 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~ 224 (546)
.|.+.|++++|+|+| .+||+|+.||.|+||++.+.. ....+ .+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC
Confidence 378899999999999 799999999999999998766 23444 6788 8899999999
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCceeeeeecCCC--------------C-----------------CCCCCcccceEE
Q 009022 225 TND--GTVYAASSDGTVSCTDLETGLALSLMNVNPN--------------G-----------------WHGPRTWRMLYG 271 (546)
Q Consensus 225 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------~-----------------~~~~~~~~~v~~ 271 (546)
+ + .+|++++.|+.|++|++.++........... . .....+...|.+
T Consensus 104 ~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 Q-KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp C-CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred C-CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8 6 7999999999999999986543211000000 0 000112236999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE-----EeecCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCC
Q 009022 272 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-----LIHRKGSKVVGLHCNPIQP-ELLLSCGNDHFARIWDIRRLE 345 (546)
Q Consensus 272 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~ 345 (546)
++|+|++++|++| .|+.|++||+.+........ ....|...|.+++|+| ++ .+|++|+.||.|++||+++..
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCc
Confidence 9999999999999 79999999998533221111 1345667899999999 76 999999999999999998765
Q ss_pred CC-ceeeec-CCCC------------cEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CCCCCCCcceeeccCC-------
Q 009022 346 AG-SSLCDL-PHKR------------VVNSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDF------- 403 (546)
Q Consensus 346 ~~-~~~~~~-~~~~------------~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~------- 403 (546)
.. ..+..+ .|.. .|.+++|+|++++|++++. +.|++||+++ ++...... .+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~----~~~~~~~~l~~ 335 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ----VHEYLRSKLCS 335 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE----SCGGGTTTHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee----ccccccccccc
Confidence 41 112222 4544 8999999999999999999 9999999986 55433211 1110
Q ss_pred ----cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC--------------------
Q 009022 404 ----NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP-------------------- 459 (546)
Q Consensus 404 ----~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~-------------------- 459 (546)
......+.++|+|+ |.+++ +|+.|+.|+|||+.+++.+. +..+
T Consensus 336 ~~~~~~i~~~~~~~~s~~---------~~~l~---s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGS---------DSVVM---TGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp HHHTSGGGCCCCEEECTT---------SSEEE---EECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSC
T ss_pred cccccccccceEEEECCC---------CCEEE---EeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCC
Confidence 00001234899998 77777 89999999999999887642 1111
Q ss_pred ------------CCCcccceeeecCCCcEEEEecCCcEEEEcCC
Q 009022 460 ------------NITTISPVNKLHPRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 460 ------------~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~ 491 (546)
....+..+ +|+|++++||+|+.+.+++|...
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~-~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHT-AWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEE-EECSSSSEEEEECSSCEEEEECC
T ss_pred cccccccccccccCCceeEE-EECCCCCEEEEEecceeeeeccc
Confidence 12345566 99999999999996668888753
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.9e-34 Score=268.46 Aligned_cols=262 Identities=18% Similarity=0.277 Sum_probs=214.8
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+|...|++++|+|+ +.+|++++.||.|++|++.+++....+..+.. .|.+++|+|++++|++++.|+.|
T Consensus 20 ~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 20 AGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSEE
T ss_pred cccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCC---------ceEEEEEcCCCCEEEEECCCCEE
Confidence 789999999999999 99999999999999999999988877765543 49999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCC
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS 369 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 369 (546)
++||+.+++... ....|...|.+++|+| ++.+|++|+.|+.|++||+++.+. +..+ .|...|.+++|+|++.
T Consensus 90 ~vwd~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 162 (312)
T 4ery_A 90 KIWDVSSGKCLK---TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHSDPVSAVHFNRDGS 162 (312)
T ss_dssp EEEETTTCCEEE---EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSS
T ss_pred EEEECCCCcEEE---EEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE---EEEecCCCCcEEEEEEcCCCC
Confidence 999999876433 4456667899999999 999999999999999999976543 3333 6889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 370 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+|++++.||.|++||+.+++.... ...........++|+|+ |.+++ +++.|+.|++||+.+
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~~~~~~~~~---------~~~l~---~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKT-------LIDDDNPPVSFVKFSPN---------GKYIL---AATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE-------ECCSSCCCEEEEEECTT---------SSEEE---EEETTTEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCCCceeeE-------EeccCCCceEEEEECCC---------CCEEE---EEcCCCeEEEEECCC
Confidence 999999999999999987654211 11111122345789998 67777 788999999999999
Q ss_pred hhhhHhhcCCCCCcccceeee-cCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 450 GQLVAEVMDPNITTISPVNKL-HPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~-s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
++.+..+.+|..........+ .+++.+|++|+ ||.|++||+.+++.+..+.+|...+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 998888877753332221134 46789999999 999999999999999999998876554
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.2e-34 Score=273.55 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=229.3
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc---eeEEecccCCCceEEEEEecCCCC-EEEEEeCCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i 239 (546)
....+|.+.|++++|+|++ .+|++|+.|+.|+||++.+.. ..... ..|...|.+++|+|+ +. +|++++.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN-TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC-CCcEEEEEcCCCeE
Confidence 4456899999999999999 689999999999999998766 22333 479999999999999 99 99999999999
Q ss_pred EEEEC-CCCceeeeeec--CCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC---------CCCCcceEEe
Q 009022 240 SCTDL-ETGLALSLMNV--NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART---------NSRSGEAILI 307 (546)
Q Consensus 240 ~iwd~-~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~ 307 (546)
++|++ .++.. ..+.. +. ..|.+++|+| +.+|++++.++.|++||+++ .+.....
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~---------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--- 147 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEAN---------LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--- 147 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCC---------SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---
T ss_pred EEEEeccCCce-EeccccCCC---------CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---
Confidence 99999 87765 33332 22 2599999999 99999999999999999986 5444322
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~ 385 (546)
.+...|.+++|+| ++ |++++.++.|++||+++ ...........|...|.+++|+| ++.+|++++.||.|++|++
T Consensus 148 -~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 148 -KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp -SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred -eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 2556899999998 54 99999999999999987 54433444447888999999999 9999999999999999999
Q ss_pred CCC--CCCCCCcceeeccCC-----cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 386 IFG--NLDSPSREIVHSHDF-----NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 386 ~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
... ............+.. ........++|+|+ |.+++ +|+.|+.|++||+.+++++..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---------HKFLY---TAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---------TCCEE---EEETTSCEEEEETTTTEEEEECCC
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCC---------CCEEE---EecCCceEEEEcCccHhHhhhhhc
Confidence 876 111111111111111 01123457899997 66666 788999999999999999999888
Q ss_pred CCCCcccceeeecCCCcEEEEec-CCc-EEEEcC
Q 009022 459 PNITTISPVNKLHPRDDVLASGS-SRS-IFIWRP 490 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~~~l~sgs-dg~-i~vwd~ 490 (546)
|+...+.++ + |++++|++|+ ||. .+.|..
T Consensus 292 ~h~~~v~~~-~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 292 FNEDSVVKI-A--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CSSSEEEEE-E--ECSSEEEEEEECTHHHHCSSS
T ss_pred ccCCCceEe-c--CCCCeEEEEecCCcccccccc
Confidence 755788877 4 9999999999 998 555553
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-35 Score=288.91 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=223.2
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.+++++|+|++ ++|++|+.|+.|++|++.+......+ ..| ..+....|+|+ +++|++++.||.|++||+.++....
T Consensus 58 ~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecC-CeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceee
Confidence 45578999999 67999999999999999886655444 334 44555577888 9999999999999999999888777
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.+..+.. .|.+++|+|++++|++++.|+.|++||+.+++... ....|...|.+++|+| ++.+|++++
T Consensus 134 ~~~~h~~---------~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~-~~~~l~s~~ 200 (420)
T 3vl1_A 134 IDQAHVS---------EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR---TLIGHRATVTDIAIID-RGRNVLSAS 200 (420)
T ss_dssp ETTSSSS---------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE---EEECCSSCEEEEEEET-TTTEEEEEE
T ss_pred ecccccC---------ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce---EEcCCCCcEEEEEEcC-CCCEEEEEc
Confidence 6544433 59999999999999999999999999999876553 3456777999999999 999999999
Q ss_pred CCCeEEEEECCCCCCCceeeec-CCCCcEEE---------------------EEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 332 NDHFARIWDIRRLEAGSSLCDL-PHKRVVNS---------------------AYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~---------------------~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.||.|++||+++.+....+... .+...|.+ ++|+|++++|++++.||.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999875543333221 24444444 4557889999999999999999998765
Q ss_pred CCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee-eeeecCCCCcCcceEEEECCchhh-hHhhcCCCCCcccce
Q 009022 390 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQL-VAEVMDPNITTISPV 467 (546)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~v 467 (546)
... ...........+++|+|+ +. +++ +|+.|+.|++||+.+++. +..+..++...+..+
T Consensus 281 ~~~-------~~~~~~~~~v~~~~~~~~---------~~~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 281 QTI-------QLPSKFTCSCNSLTVDGN---------NANYIY---AGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEE-------EECCTTSSCEEEEEECSS---------CTTEEE---EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred eeE-------EcccccCCCceeEEEeCC---------CCCEEE---EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 321 111112223467899998 55 566 788999999999999864 677777676777766
Q ss_pred eeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 468 NKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 468 ~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
+.+++++|++|+ ||.|+||++....
T Consensus 342 --~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 342 --YFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp --EEETTEEEEEETTTEEEEEEEECCTT
T ss_pred --EeCCCCEEEEecCCccEEEEeccCCC
Confidence 556889999999 9999999988743
No 66
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-34 Score=275.39 Aligned_cols=298 Identities=14% Similarity=0.180 Sum_probs=233.3
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
|.+.|.+++|+|+| ++++++..++.+.+|........... .+|...|++++|+|+ +.+|++++ ||.|++|++.++.
T Consensus 8 ~~~~v~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADG-QMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSS-CEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCC-CEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCC
Confidence 66789999999999 68888887777877776655444444 479999999999999 99999999 9999999998876
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
....+.... ...+...+.+++|+|++++|++++.++.|++||+.++.... ......+...|.+++|+| ++.+|+
T Consensus 84 ~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~ 157 (337)
T 1gxr_A 84 NKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAISP-DSKVCF 157 (337)
T ss_dssp CCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-EEEEECSSSCEEEEEECT-TSSEEE
T ss_pred ceeeeeccc----ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-eeecccCCCceEEEEECC-CCCEEE
Confidence 433322100 00112369999999999999999999999999998875322 234555667899999999 999999
Q ss_pred EEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
+++.+|.|++||+++.+. +..+ .|...|.+++|+|++++|++++.||.|++||+.+++.... +....
T Consensus 158 ~~~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---------~~~~~ 225 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ---------HDFTS 225 (337)
T ss_dssp EEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---------EECSS
T ss_pred EEeCCCcEEEEeCCCCce---eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee---------ecCCC
Confidence 999999999999976443 3333 6889999999999999999999999999999987754211 11222
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEE
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 486 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~ 486 (546)
....+.|+|+ |.+++ +++.++.|++|++.+++.. .+..|. ..+.++ +|+|++++|++++ ||.|+
T Consensus 226 ~v~~~~~s~~---------~~~l~---~~~~~~~i~~~~~~~~~~~-~~~~~~-~~v~~~-~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 226 QIFSLGYCPT---------GEWLA---VGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSL-KFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp CEEEEEECTT---------SSEEE---EEETTSCEEEEETTSSCEE-EECCCS-SCEEEE-EECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCC---------CCEEE---EEcCCCcEEEEECCCCCeE-EEcCCc-cceeEE-EECCCCCEEEEecCCCcEE
Confidence 3457889998 66666 6788999999999987654 344443 677777 9999999999999 99999
Q ss_pred EEcCCCCCccceeeccc
Q 009022 487 IWRPKEKSELVEQKEEM 503 (546)
Q Consensus 487 vwd~~~~~~~~~~~~~~ 503 (546)
+|++.+++.+.......
T Consensus 291 ~~~~~~~~~~~~~~~~~ 307 (337)
T 1gxr_A 291 AWRTPYGASIFQSKESS 307 (337)
T ss_dssp EEETTTCCEEEEEECSS
T ss_pred EEECCCCeEEEEecCCC
Confidence 99999998875554333
No 67
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=307.72 Aligned_cols=397 Identities=9% Similarity=0.032 Sum_probs=257.9
Q ss_pred CccceeeeehhhhhhccCCCcccCcccceeecCCCCceeeeccCCCccccccccccccCCccccCCCCCCCCchhhhhcc
Q 009022 64 GKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQ 143 (546)
Q Consensus 64 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (546)
+...++++.|+++++|+..... .+..+..+..+.+..+.+....+++++.+..+.+|+......
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~----------------~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQK----------------VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCS----------------EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEECcCeEEEEECCCCc----------------EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 3467888889999999743211 011111122344444555566778888888988887543221
Q ss_pred cCCCCCCCCCCccCCCceee-eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc-----------
Q 009022 144 LRPNMTYMKPAHVIPDQVNC-AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----------- 211 (546)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------- 211 (546)
. .+.++..... ..+.+|.+.|++|+|+|++..+|++|+.|+.| |||+.+.+....+..
T Consensus 133 ~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 133 S---------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp E---------EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred c---------cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 1 0000000000 24578999999999999754689999999999 999998877666531
Q ss_pred ------cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeec-----CCCCC---CC-CCcccceEEEEec-
Q 009022 212 ------IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNV-----NPNGW---HG-PRTWRMLYGMDIN- 275 (546)
Q Consensus 212 ------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~---~~-~~~~~~v~~~~~~- 275 (546)
.|...|++++|+|+ +.+|++++.||.|++||+.+++.+..... +.... .+ ......|++++|+
T Consensus 203 ~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ccccccccCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 23578999999999 99999999999999999999887653211 10000 00 0011246666663
Q ss_pred ---CCC-CEEEEE-------------------------------------------------------------------
Q 009022 276 ---PEK-GVVLVA------------------------------------------------------------------- 284 (546)
Q Consensus 276 ---~~~-~~l~~~------------------------------------------------------------------- 284 (546)
|++ .+|++|
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 222 233333
Q ss_pred ---------eCCCcEEEEeCCCCCCCcce----EEeecCCCcEEE----------------------------------E
Q 009022 285 ---------DNFGFLYLVDARTNSRSGEA----ILIHRKGSKVVG----------------------------------L 317 (546)
Q Consensus 285 ---------~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~i~~----------------------------------~ 317 (546)
+.+|.|++|++.++...... .....+...|++ +
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence 33444555554333211000 000001123333 4
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCc--eeee-------cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGS--SLCD-------LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-------~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
+|+| ++++|++|+.|++|++||+.+..... .+.. .+|...|.+|+|+|++++||+|+.||+|+||++.++
T Consensus 442 ~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred cccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 4567 88999999999999999998764321 1111 168899999999999999999999999999999877
Q ss_pred CCCCC------Cc------------------------------ceeeccCCccc-CCceeEEecCCCCCCceeEEeeeee
Q 009022 389 NLDSP------SR------------------------------EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYIS 431 (546)
Q Consensus 389 ~~~~~------~~------------------------------~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~ 431 (546)
+.... .. .......+..+ ..+..++|+|+ | +++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd---------G-~lA 590 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI---------G-FVG 590 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT---------S-EEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC---------c-EEE
Confidence 43110 00 00001111222 23357889998 8 888
Q ss_pred ecCCCCcCcceEEEECCchhhh-----Hhhc-CCCCCcccceeeec-----CCC---cEEEEec-CCcEEEEcC---CCC
Q 009022 432 ENYNGAALHPIDFIDITTGQLV-----AEVM-DPNITTISPVNKLH-----PRD---DVLASGS-SRSIFIWRP---KEK 493 (546)
Q Consensus 432 ~~~~g~~d~~i~iwd~~~~~~~-----~~~~-~~~~~~i~~v~~~s-----~~~---~~l~sgs-dg~i~vwd~---~~~ 493 (546)
+|+.|++|+|||+.++..+ ..+. +| ...|.++ +|+ ||| ++|++|+ |++|++|++ .+|
T Consensus 591 ---sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv-~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 591 ---IAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCI-EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp ---EEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEE-EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred ---EEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEE-EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 8999999999999887654 2343 44 4778888 999 885 8999999 999999999 888
Q ss_pred Cccceeeccc
Q 009022 494 SELVEQKEEM 503 (546)
Q Consensus 494 ~~~~~~~~~~ 503 (546)
+.+.++.+|.
T Consensus 666 ~~~~~~~~~~ 675 (902)
T 2oaj_A 666 KFDVQLMDIT 675 (902)
T ss_dssp CEEEEEEEEE
T ss_pred cEEEEecCce
Confidence 8888887775
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-34 Score=297.15 Aligned_cols=312 Identities=15% Similarity=0.183 Sum_probs=239.6
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCC---ceEEEEEecCCCCEEEEEeCCC
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASSDG 237 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~dg 237 (546)
.....+.+|...|++++|+|+++.+|++++.|+.|++||+.+.+....+ ..|.. .|.+++|+|+++.+|++++.||
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 3556788999999999999999558999999999999999988887777 67988 9999999997678999999999
Q ss_pred eEEEEECCCCceeeee-e---cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE--------
Q 009022 238 TVSCTDLETGLALSLM-N---VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-------- 305 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------- 305 (546)
.|++||+.+++.+..+ . .+.. .|.+++|+ ++.+|++++.++.|++||+.+++......
T Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~~~~---------~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIEDDQEPVQG---------GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp CEEEEETTTCCEEEECCBTTBCCCS---------CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred eEEEEECCCCCEeEEecccccccCC---------ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 9999999999888776 3 2222 59999999 99999999999999999998754321110
Q ss_pred ----------------------------------EeecCCCc---------------------------------EEEEE
Q 009022 306 ----------------------------------LIHRKGSK---------------------------------VVGLH 318 (546)
Q Consensus 306 ----------------------------------~~~~~~~~---------------------------------i~~~~ 318 (546)
....|... |.+++
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~ 379 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence 11122223 34444
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCC-------------------------------CCceeeecCCCCcEEEEEEeCC
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLE-------------------------------AGSSLCDLPHKRVVNSAYFSPS 367 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------~~~~~~~~~~~~~v~~~~~~p~ 367 (546)
| + .+..|++++.|+.|++|++.+.. ....+..+.+...+.+++|+
T Consensus 380 ~-~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 455 (615)
T 1pgu_A 380 N-S-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-- 455 (615)
T ss_dssp C-C-STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--
T ss_pred E-C-CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--
Confidence 4 2 35566666666666666654321 12233333467788999998
Q ss_pred CCEEEEEeC-CCcEEEEECCCCCCCCCCcceeeccCCcc-cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE
Q 009022 368 GSKILTTSQ-DNRLRIWDSIFGNLDSPSREIVHSHDFNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 445 (546)
Q Consensus 368 ~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw 445 (546)
+.+|++++. |+.|++||+.++.+.. ..+.. ......++|+|+ |++++ +|+.|+.|++|
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~---------g~~l~---~~~~dg~i~iw 515 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF--------DLKTPLRAKPSYISISPS---------ETYIA---AGDVMGKILLY 515 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE--------ECSSCCSSCEEEEEECTT---------SSEEE---EEETTSCEEEE
T ss_pred CCEEEEeecCCCeEEEEECCCccccc--------cccCCccCceEEEEECCC---------CCEEE---EcCCCCeEEEe
Confidence 889999999 9999999998754310 11122 223457899998 77887 78899999999
Q ss_pred ECCchhhhHhhcCCCCCcccceeeecC----------CCcEEEEec-CCcEEEEcCCCC-CccceeeccceEEEe
Q 009022 446 DITTGQLVAEVMDPNITTISPVNKLHP----------RDDVLASGS-SRSIFIWRPKEK-SELVEQKEEMKIIVC 508 (546)
Q Consensus 446 d~~~~~~~~~~~~~~~~~i~~v~~~s~----------~~~~l~sgs-dg~i~vwd~~~~-~~~~~~~~~~~~i~~ 508 (546)
++.+++.+..+.+.+...+.++ +|+| ++++|++|+ ||.|+||++.++ +.+..+.+|...+.+
T Consensus 516 ~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 589 (615)
T 1pgu_A 516 DLQSREVKTSRWAFRTSKINAI-SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589 (615)
T ss_dssp ETTTTEEEECCSCCCSSCEEEE-EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEE
T ss_pred eCCCCcceeEeecCCCCceeEE-EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEE
Confidence 9999999988877445888888 9999 999999999 999999999998 778888877654433
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.7e-34 Score=276.20 Aligned_cols=253 Identities=15% Similarity=0.190 Sum_probs=199.4
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
+...|++++|+|+| ++|++|+.|+.|+|||+.+++....+ .+|...|.+++|+|+ +.+|++++.|++|++||+.+++
T Consensus 122 ~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 122 SDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE
T ss_pred CceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCe
Confidence 44569999999999 79999999999999999988877776 789999999999999 9999999999999999999998
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceE----EeecCCCcEEEEEECCCC
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAI----LIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~i~~~~~~p~~ 323 (546)
....+.... .+.+++|+| ++.+|++|+.|+.|++||++++....... ....|...|.+++|+| +
T Consensus 199 ~~~~~~~~~----------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~ 267 (393)
T 1erj_A 199 CSLTLSIED----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-D 267 (393)
T ss_dssp EEEEEECSS----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-T
T ss_pred eEEEEEcCC----------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-C
Confidence 877665432 489999999 89999999999999999998876433221 1135667899999999 9
Q ss_pred CCEEEEEeCCCeEEEEECCCCCC---------Ccee-eecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEA---------GSSL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~---------~~~~-~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
+.+|++|+.|+.|++||+++... .... ...+|...|.+++|+|++.+|++|+.|+.|++||+.+++...
T Consensus 268 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~- 346 (393)
T 1erj_A 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL- 346 (393)
T ss_dssp SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE-
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-
Confidence 99999999999999999975432 1122 223799999999999999999999999999999998876421
Q ss_pred CcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 394 SREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 394 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
.+..+. ....++|+|... +...+.+++ +|+.|++|+||++...
T Consensus 347 --------~l~~h~~~v~~v~~~~~~~---~~p~~~~l~---sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 347 --------MLQGHRNSVISVAVANGSS---LGPEYNVFA---TGSGDCKARIWKYKKI 390 (393)
T ss_dssp --------EEECCSSCEEEEEECSSCT---TCTTCEEEE---EEETTSEEEEEEEEEC
T ss_pred --------EECCCCCCEEEEEecCCcC---cCCCCCEEE---EECCCCcEEECccccc
Confidence 111222 234667766311 111156676 8999999999998653
No 70
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=269.69 Aligned_cols=299 Identities=12% Similarity=0.155 Sum_probs=208.6
Q ss_pred eeccCCCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeec-cc-cCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVI-RY-HSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~ 180 (546)
+..+.+|+..+......+. .+++++.+..+++|+..... ......+ .+ |...|++++|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp EEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECT
T ss_pred ceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECC
Confidence 3455677754443333443 67888889999998753211 1122334 34 999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCC-------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC----ce
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG----LA 249 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~ 249 (546)
++ ++|++|+.|++|+||++... .....+ .+|...|.+++|+|+ +.+|++|+.|++|++||+... +.
T Consensus 69 ~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~ 145 (330)
T 2hes_X 69 HT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYEC 145 (330)
T ss_dssp TS-SEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred CC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence 99 79999999999999998532 233334 789999999999999 999999999999999999532 33
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC--CCEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PELL 327 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~~l 327 (546)
+..+..+.. .|.+++|+|++.+|++++.|+.|++||+.+... ........|...|.+++|+| + +.+|
T Consensus 146 ~~~~~~h~~---------~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~l 214 (330)
T 2hes_X 146 ISVLQEHSQ---------DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDK-TEGVFRL 214 (330)
T ss_dssp EEEECCCSS---------CEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECC-SSSSCEE
T ss_pred EEEeccCCC---------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecC-CCCeeEE
Confidence 444443332 599999999999999999999999999876421 11224556777999999999 6 6789
Q ss_pred EEEeCCCeEEEEECCCCCCC-----ceeeec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 328 LSCGNDHFARIWDIRRLEAG-----SSLCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~-----~~~~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
++|+.|++|++||++..... .....+ .|...|.+++|++++ +|++++.||.|++|++.++.. .....
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~-----~~~~~ 288 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW-----KVFAK 288 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE-----EEEEE
T ss_pred EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce-----EEEec
Confidence 99999999999998653211 122222 388999999999765 899999999999999876531 00101
Q ss_pred cCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 401 HDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 401 ~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
....... ....++|+|... +.+++ +|+.|+.|+||++.+
T Consensus 289 ~~~~h~~~~v~~v~~~~~~~-------~~~la---s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 289 RALCHGVYEINVVKWLELNG-------KTILA---TGGDDGIVNFWSLEK 328 (330)
T ss_dssp ESCTTTTSCEEEEEEC------------CCEE---EEETTSEEEEEEC--
T ss_pred cccccccceEEEEEEecCCC-------ceEEE---EecCCCcEEEEEecc
Confidence 0011111 335688988311 56666 789999999999864
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=271.34 Aligned_cols=299 Identities=13% Similarity=0.107 Sum_probs=227.7
Q ss_pred eeeeccccCCCeEEEEEcCCC--CcEEEEEcCCCcEEEEeCCC-CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 162 NCAVIRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~--~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
.+..+.+|.+.|++++|+|++ .++|++|+.||.|+||++.+ +........+|...|.+++|+|+ +.+|++++.||.
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 109 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKT 109 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CCEEEEEcCCCc
Confidence 446788999999999999993 27999999999999999997 55543444789999999999998 999999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe--cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI--NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
|++||+.+++.+.... +.. .|.+++| ++++.+|++++.||.|++||+++++..... .. ...+.+
T Consensus 110 v~iwd~~~~~~~~~~~-~~~---------~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~-~~~~~~ 175 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQ-HDA---------PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL---QL-PERCYC 175 (368)
T ss_dssp EEEEETTTTEEEEEEE-CSS---------CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE---EC-SSCEEE
T ss_pred EEEEEcCCCCceeecc-ccC---------ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE---ec-CCCceE
Confidence 9999999998776433 222 5999999 899999999999999999999987655322 22 236777
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCE----EEEEeCCCcEEEEECCCCCCCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK----ILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~----l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
+.+.+ ..+++++.++.+++|+++............+...+.++.+.++... +++++.||.|++|++.......
T Consensus 176 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 176 ADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred EEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 77765 5888889999999999976433222212234556677777765554 9999999999999998753211
Q ss_pred CCcceeeccCC-------cc-cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcc
Q 009022 393 PSREIVHSHDF-------NR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 464 (546)
Q Consensus 393 ~~~~~~~~~~~-------~~-~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i 464 (546)
.... ...+.. .. .....+++|+|+ |.+++ +|+.|+.|+|||+.+++++..+.+|. ..+
T Consensus 253 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v 318 (368)
T 3mmy_A 253 DNFT-FKCHRSNGTNTSAPQDIYAVNGIAFHPV---------HGTLA---TVGSDGRFSFWDKDARTKLKTSEQLD-QPI 318 (368)
T ss_dssp HSEE-EECSEEC----CCCEEECCEEEEEECTT---------TCCEE---EEETTSCEEEEETTTTEEEEECCCCS-SCE
T ss_pred ccee-eeeeecccccccccccccceEEEEEecC---------CCEEE---EEccCCeEEEEECCCCcEEEEecCCC-CCc
Confidence 0000 001100 00 013457899998 66776 78899999999999999998887765 778
Q ss_pred cceeeecCCCcEEEEec-CCcEEEEcCCCC
Q 009022 465 SPVNKLHPRDDVLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~ 493 (546)
.++ +|+|+|++|++|+ |+..+.|++-..
T Consensus 319 ~~~-~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 319 SAC-CFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEE-EECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred eEE-EECCCCCeEEEEecccccccccccCC
Confidence 888 9999999999998 876666665443
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=272.24 Aligned_cols=263 Identities=15% Similarity=0.186 Sum_probs=207.7
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC--CceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCe
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGT 238 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~ 238 (546)
.+.++.+|.+.|++++|+|++ ++|++|+.||.|+||++.. ......+ .+|...|++++|+|+ ++.+|++++.||.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 346789999999999999999 6899999999999999973 3444444 689999999999864 2789999999999
Q ss_pred EEEEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 239 VSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 239 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
|++||+.+++ .+..+..+.. .|.+++|+|+ +.+|++++.++.|++||++...... ......+...|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v 150 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSA---------SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGV 150 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSS---------CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-EEEEECCTTCE
T ss_pred EEEEEcCCCceeEeeeecCCCc---------ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-eEEecCCCCce
Confidence 9999999987 4444433322 5999999999 9999999999999999999875443 23455677799
Q ss_pred EEEEECCC------------CCCEEEEEeCCCeEEEEECCCCCCCc-eeee-cCCCCcEEEEEEeCC---CCEEEEEeCC
Q 009022 315 VGLHCNPI------------QPELLLSCGNDHFARIWDIRRLEAGS-SLCD-LPHKRVVNSAYFSPS---GSKILTTSQD 377 (546)
Q Consensus 315 ~~~~~~p~------------~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~~p~---~~~l~s~s~d 377 (546)
.+++|+|. ++.+|++++.||.|++||+++..... .... .+|...|.+++|+|+ +.+|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 99999994 48999999999999999998654322 2222 278999999999999 8999999999
Q ss_pred CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc
Q 009022 378 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 378 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 457 (546)
|.|++||+.++.... . . .+ ...
T Consensus 231 g~i~iwd~~~~~~~~------------------~---------------~---------------~~---------~~~- 252 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPW------------------K---------------K---------------TL---------LKE- 252 (379)
T ss_dssp SCEEEEEESSTTSCC------------------E---------------E---------------EE---------SSS-
T ss_pred CEEEEEeCCCCCccc------------------e---------------e---------------ee---------ecc-
Confidence 999999987643200 0 0 00 000
Q ss_pred CCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc
Q 009022 458 DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 458 ~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
..+...+.++ +|+|++++|++++ ||.|+||++..+..
T Consensus 253 ~~~~~~v~~~-~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 253 EKFPDVLWRA-SWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SCCSSCEEEE-EECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred ccCCCcEEEE-EEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 1123566777 8999999999998 99999999986543
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.4e-33 Score=276.69 Aligned_cols=325 Identities=16% Similarity=0.171 Sum_probs=237.6
Q ss_pred ccCCCcccc-ccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 105 KMPGHTTMS-CPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
.+.+|...+ .... .....+++++.+..+.+|+... ...+..+.+|.+.|++++|+|++
T Consensus 116 ~l~~h~~~v~~~~~-~~~~~l~sgs~dg~i~vwd~~~-------------------~~~~~~~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 116 TLRGHMTSVITCLQ-FEDNYVITGADDKMIRVYDSIN-------------------KKFLLQLSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp EEECCSSSCEEEEE-EETTEEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECSTT-
T ss_pred EEcCCCCCcEEEEE-ECCCEEEEEcCCCcEEEEECCC-------------------CcEEEEEeCCCcCEEEEEEcCCC-
Confidence 456676432 2222 2345778888889988887432 23456788999999999999987
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCCC----
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPN---- 258 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---- 258 (546)
+|++|+.||+|+|||+.++.....+ .+|...|.+++|++. ++.+|++++.||.|++||+.++...........
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 7999999999999999998887777 689999999999952 278999999999999999998764422111000
Q ss_pred ------------CCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCE
Q 009022 259 ------------GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 259 ------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 326 (546)
...+ +...+.++ ++++.++++++.||.|++||+++++... ....|...|.+++|+| ++.+
T Consensus 253 ~~~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~ 324 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDH-ERKR 324 (464)
T ss_dssp ESCGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET-TTTE
T ss_pred eeccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcC-CCCE
Confidence 0001 11134444 6789999999999999999998765432 3455677899999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
|++|+.||.|++||+++++. +..+ +|...|.+++|+ +.+|++++.||.|++||+.++.... .. ..
T Consensus 325 l~sg~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~------~~---~~ 390 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGEL---MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------SY---HH 390 (464)
T ss_dssp EEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE------EE---EC
T ss_pred EEEEeCCCcEEEEECCCCcE---EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee------ee---cC
Confidence 99999999999999976543 3333 799999999996 5899999999999999998754211 11 11
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCc
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 484 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~ 484 (546)
......+.|+|+ +.+++ +|+ ++.|++||+.+++.+..+...+...+.++ +|+ ...++++++ ||.
T Consensus 391 ~~~~~~~~~~~~---------~~~l~---~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v-~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 391 TNLSAITTFYVS---------DNILV---SGS-ENQFNIYNLRSGKLVHANILKDADQIWSV-NFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp TTCCCEEEEEEC---------SSEEE---EEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE-EEE-TTEEEEEEEETTE
T ss_pred CCCccEEEEEeC---------CCEEE---Eec-CCeEEEEECCCCcEEehhhccCCCcEEEE-Eec-CCEEEEEEEeCCe
Confidence 111224566766 66666 455 89999999999999887444455788877 786 334444555 676
Q ss_pred EEEEc
Q 009022 485 IFIWR 489 (546)
Q Consensus 485 i~vwd 489 (546)
+.+|-
T Consensus 456 ~~i~~ 460 (464)
T 3v7d_B 456 SFLEI 460 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65553
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-32 Score=272.05 Aligned_cols=283 Identities=18% Similarity=0.284 Sum_probs=219.4
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
..+|...|+|++| ++ ++|++|+.||.|+|||+.+++....+ .+|...|.+++| + +.+|++|+.||.|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECC
Confidence 4567788999988 56 68999999999999999998887777 689999999999 4 7899999999999999999
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+++.+..+..+.. .|.+++|+ +.++++|+.||.|++||+.++...........+...|.+++| ++.
T Consensus 202 ~~~~~~~~~~h~~---------~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~ 267 (435)
T 1p22_A 202 TGEMLNTLIHHCE---------AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDK 267 (435)
T ss_dssp SCCEEEEECCCCS---------CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETT
T ss_pred CCcEEEEEcCCCC---------cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCC
Confidence 9998888765543 48999996 469999999999999999987765433455667779999999 458
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
+|++|+.||.|++||+++... +..+ +|...|.++.| ++.+|++|+.||.|++||+.+++.... +.
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~---------~~ 333 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCEF---VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---------LE 333 (435)
T ss_dssp EEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE---------EC
T ss_pred EEEEEeCCCeEEEEECCcCcE---EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE---------Ee
Confidence 999999999999999986544 3333 68899999999 578999999999999999988764221 11
Q ss_pred ccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh---------hhHhhcCCCCCcccceeeecCCC
Q 009022 405 RHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ---------LVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 405 ~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
.+.. ..++.| .+.+++ +|+.||.|++||+.++. ++..+.+|. ..+.++ +| ++
T Consensus 334 ~h~~~v~~~~~-----------~~~~l~---sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l-~~--~~ 395 (435)
T 1p22_A 334 GHEELVRCIRF-----------DNKRIV---SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS-GRVFRL-QF--DE 395 (435)
T ss_dssp CCSSCEEEEEC-----------CSSEEE---EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS-SCCCCE-EE--CS
T ss_pred CCcCcEEEEEe-----------cCCEEE---EEeCCCcEEEEECCCCCCccccccchheeeccCCC-CCeEEE-Ee--CC
Confidence 1221 233444 255666 78999999999998876 566666665 677777 67 78
Q ss_pred cEEEEec-CCcEEEEcCCCCCccceeec
Q 009022 475 DVLASGS-SRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 475 ~~l~sgs-dg~i~vwd~~~~~~~~~~~~ 501 (546)
.+|++|+ ||.|+|||+.++........
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SCEEECCSSSEEEEEC------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence 8999999 99999999988765554433
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.3e-33 Score=273.30 Aligned_cols=320 Identities=15% Similarity=0.197 Sum_probs=247.4
Q ss_pred ccCCCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCc
Q 009022 105 KMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNH 184 (546)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 184 (546)
.+.+|...+..........+++++.++...+|+... ..+...+.+|.+.|++++|+ + .
T Consensus 113 ~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~--~-~ 170 (445)
T 2ovr_B 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT-------------------GKCLRTLVGHTGGVWSSQMR--D-N 170 (445)
T ss_dssp EEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT-------------------CCEEEECCCCSSCEEEEEEE--T-T
T ss_pred EecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC-------------------CcEEEEEcCCCCCEEEEEec--C-C
Confidence 345676432111222356678888888888886432 23446788999999999998 3 5
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
+|++|+.||+|++||+.+++....+ .+|...|.++.|+ +..|++++.||.|++||+.+++.+..+..+..
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------ 240 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA------ 240 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSS------
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc------
Confidence 8999999999999999998887777 6899999999996 55899999999999999999998888766543
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 344 (546)
.+.+++| ++.++++++.+|.|++||++++.... ....+...|.++.| ++.++++++.||.|++||+++.
T Consensus 241 ---~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 241 ---AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp ---CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC
T ss_pred ---cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---EecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC
Confidence 4888888 78999999999999999998765432 34456678999999 5689999999999999999865
Q ss_pred CCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc-ccCCceeEEecCCCCCCc
Q 009022 345 EAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN-RHLTPFRAEWDPKDPSES 422 (546)
Q Consensus 345 ~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~ 422 (546)
+. +..+ +|...+.++.+ ++.+|++++.||.|++||+.+++.... ..... ......++.|+
T Consensus 310 ~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~v~~~~~~------- 371 (445)
T 2ovr_B 310 NC---IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT------LQGPNKHQSAVTCLQFN------- 371 (445)
T ss_dssp CE---EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE------ECSTTSCSSCEEEEEEC-------
T ss_pred CE---EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE------EccCCCCCCCEEEEEEC-------
Confidence 44 3333 68888988887 567999999999999999987764221 11111 11222345554
Q ss_pred eeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc----CCCCCcccceeeecCCCcEEEEec-CCc----EEEEcCCCC
Q 009022 423 LAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM----DPNITTISPVNKLHPRDDVLASGS-SRS----IFIWRPKEK 493 (546)
Q Consensus 423 ~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~----~~~~~~i~~v~~~s~~~~~l~sgs-dg~----i~vwd~~~~ 493 (546)
+.+++ +|+.||.|++||+.+++.+..+. ..+...+.++ +|+|++.+|++|+ ||+ |.|||+...
T Consensus 372 ----~~~l~---s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 ----KNFVI---TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ----SSEEE---EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE-EECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ----CCEEE---EEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE-EecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 44555 78899999999999999887772 2334677777 9999999999999 997 999998753
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-32 Score=271.04 Aligned_cols=282 Identities=20% Similarity=0.303 Sum_probs=225.9
Q ss_pred eeeccccCCCe-EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 163 CAVIRYHSRRV-TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 163 ~~~~~~h~~~V-~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
...+.+|.+.| .|+.+ ++ ++|++|+.||+|+|||+.+++....+ .+|...|.+++|+ +.+|++|+.||.|++
T Consensus 111 ~~~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~---~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR---DNIIISGSTDRTLKV 183 (445)
T ss_dssp CEEEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred eEEecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec---CCEEEEEeCCCeEEE
Confidence 36788999875 55555 56 68999999999999999998887777 6899999999998 459999999999999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
||+.+++.+..+..+.. .|.++.|+ +..+++|+.||.|++||+.+++... ....+...|.++++
T Consensus 184 wd~~~~~~~~~~~~h~~---------~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~-- 247 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTS---------TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH---VLMGHVAAVRCVQY-- 247 (445)
T ss_dssp EETTTTEEEEEECCCSS---------CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE---EEECCSSCEEEEEE--
T ss_pred EECCcCcEEEEECCCCC---------cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE---EEcCCcccEEEEEE--
Confidence 99999998888765543 48888885 6789999999999999999876443 34556678999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeec
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
++.+|++|+.||.|++||+++... +..+ +|...|.++.| ++.+|++++.||.|++||+.+++....
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~------- 314 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETC---LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT------- 314 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEE---EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcE---eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-------
Confidence 468899999999999999976443 3333 68899999999 889999999999999999988764211
Q ss_pred cCCcccCC-ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC--CCCcccceeeecCCCcEE
Q 009022 401 HDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP--NITTISPVNKLHPRDDVL 477 (546)
Q Consensus 401 ~~~~~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~v~~~s~~~~~l 477 (546)
+..+.. ...+.+ .+.+++ +|+.|+.|++||+.+++.+..+.++ +...+.++ +| ++++|
T Consensus 315 --~~~~~~~v~~~~~-----------~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~--~~~~l 375 (445)
T 2ovr_B 315 --LTGHQSLTSGMEL-----------KDNILV---SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-QF--NKNFV 375 (445)
T ss_dssp --ECCCCSCEEEEEE-----------ETTEEE---EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE-EE--CSSEE
T ss_pred --EcCCcccEEEEEE-----------eCCEEE---EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE-EE--CCCEE
Confidence 111111 112222 355666 7889999999999999988888763 33566665 66 46899
Q ss_pred EEec-CCcEEEEcCCCCCcccee
Q 009022 478 ASGS-SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 478 ~sgs-dg~i~vwd~~~~~~~~~~ 499 (546)
++|+ ||.|+|||+.+++.+..+
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEeCCCeEEEEECCCCceeeee
Confidence 9999 999999999999988887
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.5e-33 Score=285.99 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=236.7
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC----ceeEEecccCCCc-eEEEEEec--CCCCEEEEEeCCCeEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV----SEKIVYGNIHSCI-VNNIRFNP--TNDGTVYAASSDGTVS 240 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~-v~~~~~~~--~~~~~l~s~~~dg~i~ 240 (546)
.|.+.|++++|+|++ ++|++++ ++.|+||++.++ .....+ .+|... |++++|+| + +.+|++++.||.|+
T Consensus 16 ~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTT-CCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCC-CCEEEEecCCCEEE
Confidence 589999999999999 6888888 789999999987 666666 789999 99999999 8 99999999999999
Q ss_pred EEECCCC--------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC----CcEEEEeCCCCCCCcceEEee
Q 009022 241 CTDLETG--------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNSRSGEAILIH 308 (546)
Q Consensus 241 iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~ 308 (546)
+|++.++ .....+..+.. .|.+++|+|++++|++++.+ +.|++||.. . ......
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~---~~~~~~ 157 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAG---------PISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N---SLGEVS 157 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSS---------CEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C---EEEECC
T ss_pred EEeCCCCcccccccccccchhhcccc---------cEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C---cceeee
Confidence 9999755 44444443332 59999999999999999987 689999832 2 233445
Q ss_pred cCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCCCceeeec-CCCC---cEEEEEEeCC-CCEEEEEeCCCcEEE
Q 009022 309 RKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR---VVNSAYFSPS-GSKILTTSQDNRLRI 382 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~~p~-~~~l~s~s~dg~i~v 382 (546)
.|...|.+++|+| ++. +|++++.|+.|++||+.+.+. +..+ +|.. .|.+++|+|+ +++|++++.||.|++
T Consensus 158 ~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 158 GHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp SCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred cCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcce---eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 6777999999999 665 899999999999999875443 3333 6888 8999999999 999999999999999
Q ss_pred EECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCC--
Q 009022 383 WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN-- 460 (546)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~-- 460 (546)
||+.+++...... ............+.|+ + +.+++ +++.|+.|++||+.+++.+..+..+.
T Consensus 234 wd~~~~~~~~~~~----~~~~~~~~~v~~~~~~-~---------~~~l~---~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 234 FDGKSGEFLKYIE----DDQEPVQGGIFALSWL-D---------SQKFA---TVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp EETTTCCEEEECC----BTTBCCCSCEEEEEES-S---------SSEEE---EEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred EECCCCCEeEEec----ccccccCCceEEEEEc-C---------CCEEE---EEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9998876422110 0000122233567777 4 66666 78889999999999999888877652
Q ss_pred -CCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEEEe
Q 009022 461 -ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 508 (546)
Q Consensus 461 -~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 508 (546)
...+..+ .|+ ++.+|++|+ ||.|++|++.+++.+..+.+|...+.+
T Consensus 297 ~~~~~~~~-~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 297 LGNQQVGV-VAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344 (615)
T ss_dssp GGGCEEEE-EEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEE
T ss_pred ccCceeEE-EeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEE
Confidence 2334444 554 889999999 999999999999988888888765443
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.5e-33 Score=288.91 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=228.4
Q ss_pred eccCCCcccccccccccc--CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 104 CKMPGHTTMSCPHRVATE--YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
..+.+|+..+.....++. ..+++++.+.++++|+...... ....+...+.+|...|++++|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSD 441 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTT
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCC
Confidence 356789965555444433 4578899999999997543211 112344678999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
+ ++|++|+.|++|+|||+.++.....+ .+|...|.+++|+|+ +.+|++++.|++|++||+........... .
T Consensus 442 g-~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~---- 513 (694)
T 3dm0_A 442 G-QFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEG-G---- 513 (694)
T ss_dssp S-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSS-T----
T ss_pred C-CEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccC-C----
Confidence 9 79999999999999999998877777 689999999999999 99999999999999999875543322211 1
Q ss_pred CCCcccceEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Q 009022 262 GPRTWRMLYGMDINPEK--GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 339 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iw 339 (546)
..+...|.+++|+|++ ..|++++.|+.|++||+++.+... ....|...|++++|+| ++.+|++|+.||.|++|
T Consensus 514 -~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~---~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 514 -EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS---TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLW 588 (694)
T ss_dssp -TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSBCEEE
T ss_pred -CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEE
Confidence 1122359999999986 689999999999999998765432 4456777999999999 99999999999999999
Q ss_pred ECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee-----------eccCCcccCC
Q 009022 340 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV-----------HSHDFNRHLT 408 (546)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~ 408 (546)
|+++.+ .+..+.+...|.+++|+|++.+|++++ ++.|++||+.++.++....... ..........
T Consensus 589 d~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 589 DLAEGK---KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp ETTTTE---EEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred ECCCCc---eEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 997644 444455667899999999998887765 5669999998876432111000 0000011112
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 448 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~ 448 (546)
..+++|+|+ |++++ +|+.||.|+||++.
T Consensus 665 ~~~l~~spd---------g~~l~---sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSAD---------GSTLF---SGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECTT---------SSEEE---EEETTSEEEEEEC-
T ss_pred eeeEEEcCC---------CCEEE---EEcCCCeEEEEecc
Confidence 346889998 88888 89999999999985
No 79
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-32 Score=260.73 Aligned_cols=304 Identities=15% Similarity=0.170 Sum_probs=228.3
Q ss_pred eeccCCCcccccccccccc--CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMSCPHRVATE--YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 180 (546)
...+.||+..+....+.+. ..+++++.|.++++|++..... ....+...+.+|...|++++|+|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------------NYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------------CSEEEEEEECCCSSCEEEEEECT
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------------ccceeeEEEeCCCCCEEEEEECC
Confidence 3567899955555444443 5678899999999997543221 12334577899999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
++ ++|++|+.|+.|++|+.......... ..+...+..+.+++. +.+|++++.|+.+++||+............
T Consensus 97 dg-~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~---- 169 (340)
T 4aow_A 97 DG-QFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKYTVQDES---- 169 (340)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSS----
T ss_pred CC-CEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceEEEEecc----
Confidence 99 79999999999999999988776666 568888999999999 999999999999999999866544322111
Q ss_pred CCCCcccceEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 261 HGPRTWRMLYGMDINPEK--GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
+...+..++|++++ .++++++.|+.|++||+++..... ....|...|++++|+| ++.+|++|+.||.|++
T Consensus 170 ----~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 170 ----HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT---NHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 241 (340)
T ss_dssp ----CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred ----ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee---EecCCCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 11248888888764 578899999999999999865432 3455677999999999 9999999999999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc-cCCceeEEecCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR-HLTPFRAEWDPK 417 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~ 417 (546)
||+++.. .+..+.+...|.+++|+|++.+ ++++.|+.|++||+.++................. .....+++|+|+
T Consensus 242 wd~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 242 WDLNEGK---HLYTLDGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp EETTTTE---EEEEEECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred EEeccCc---eeeeecCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 9997644 4444556678999999998765 4566799999999987654322111111111112 223457899998
Q ss_pred CCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 418 DPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 418 ~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
|++++ +|+.|+.|+|||+.+|+
T Consensus 318 ---------g~~l~---sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 318 ---------GQTLF---AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---------SSEEE---EEETTSCEEEEEEEC--
T ss_pred ---------CCEEE---EEeCCCEEEEEeCCCcC
Confidence 77887 89999999999999986
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.3e-33 Score=271.83 Aligned_cols=289 Identities=14% Similarity=0.158 Sum_probs=220.9
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee---EEecccCCCceEEEEEec-CCCCEEEEEeCCCeEEEEECCCC
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK---IVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
....++++|+...++++++.||.|+||++...... .....+|...|++++|+| + +.+|++|+.||.|++|++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~-~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN-DNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC-TTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC-CCEEEEEeCCCeEEEEEccCC
Confidence 34468899987555667899999999999664321 222368999999999999 6 999999999999999999987
Q ss_pred -------ceeeeeecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceEEe--ecCCCcEEEE
Q 009022 248 -------LALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILI--HRKGSKVVGL 317 (546)
Q Consensus 248 -------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~i~~~ 317 (546)
..+..+..+.. .|.+++|+|++ .+|++++.||.|++||+.+++... .. ..|...|.++
T Consensus 115 ~~~~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTK---------RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGPDVHPDTIYSV 182 (402)
T ss_dssp CCSSCBCSCSEEEECCSS---------CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE---EECTTTCCSCEEEE
T ss_pred CCccccCCceEEecCCCC---------eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE---EEecCCCCCceEEE
Confidence 34455544433 59999999998 699999999999999999865432 33 4567799999
Q ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCc-EEEEEEeCCCCEEEEE---eCCCcEEEEECCCCCCCCC
Q 009022 318 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRV-VNSAYFSPSGSKILTT---SQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~s~---s~dg~i~vwd~~~~~~~~~ 393 (546)
+|+| ++.+|++++.||.|++||+++......+. .+|... +.++.|+|++.+|++| +.|+.|++||+.++....
T Consensus 183 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~- 259 (402)
T 2aq5_A 183 DWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL- 259 (402)
T ss_dssp EECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-
T ss_pred EECC-CCCEEEEEecCCcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-
Confidence 9999 99999999999999999998654322221 356655 8999999999999999 789999999998765411
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh-hHhhcCC-CCCcccceeeec
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL-VAEVMDP-NITTISPVNKLH 471 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~-~~~~~~~-~~~~i~~v~~~s 471 (546)
.............+.|+|+ |.+++. +|+.|+.|++|++.+++. +..+..+ +...+.++ +|+
T Consensus 260 -----~~~~~~~~~~v~~~~~s~~---------~~~l~~--~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~-~~s 322 (402)
T 2aq5_A 260 -----SLQELDTSSGVLLPFFDPD---------TNIVYL--CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM-GYM 322 (402)
T ss_dssp -----EEEECCCCSSCEEEEEETT---------TTEEEE--EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE-EEC
T ss_pred -----eEEeccCCCceeEEEEcCC---------CCEEEE--EEcCCCeEEEEEecCCCcceEeecccccCCcccce-EEe
Confidence 1111222334567899998 444431 567899999999999874 4444332 34677787 999
Q ss_pred CCCcEEEEecCCcEEEEcCCCCC
Q 009022 472 PRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 472 ~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
|++.++++ +++.+++|++.++.
T Consensus 323 p~~~~~~s-~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 323 PKRGLEVN-KCEIARFYKLHERK 344 (402)
T ss_dssp CGGGSCGG-GTEEEEEEEEETTE
T ss_pred ccccccee-cceeEEEEEcCCCc
Confidence 99998875 46799999998764
No 81
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.2e-32 Score=289.08 Aligned_cols=333 Identities=14% Similarity=0.172 Sum_probs=244.5
Q ss_pred ccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 105 KMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
.+.+|.. +.+..+.+....+++++.++.+.+|+... ...+..+.+|.+.|++++|+|++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-------------------~~~~~~~~~~~~~v~~~~~s~~~- 67 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-------------------QVEVRSIQVTETPVRAGKFIARK- 67 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSCEEEEEEEGGG-
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------CceEEEEecCCCcEEEEEEeCCC-
Confidence 3456663 34444444455566667777777776322 23456788999999999999999
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC-ceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 262 (546)
++|++|+.||.|+||++.++.....+ .+|...|++++|+|+ +.+|++++.||.|++|++.++ .....+..+..
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---- 141 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---- 141 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC----
Confidence 78999999999999999998887777 689999999999999 999999999999999999987 55555544433
Q ss_pred CCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Q 009022 263 PRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFARIWD 340 (546)
Q Consensus 263 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~iwd 340 (546)
.|.+++|+| ++..|++++.+|.|++||+.++...... ...+...+.+++|+|. ++.+|++++.+|.|++||
T Consensus 142 -----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 142 -----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred -----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 499999999 8899999999999999999886654332 2223357999999873 577999999999999999
Q ss_pred CCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 341 IRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 341 ~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
+.+... +..+ +|...|.+++|+|++.+|++++.||.|++||+.+++.... .. ........++|+|+..
T Consensus 215 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-------~~-~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 215 YQTKSC---VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT-------LN-VGLERSWCIATHPTGR 283 (814)
T ss_dssp TTTTEE---EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE-------EC-CSSSSEEEEEECTTCG
T ss_pred CCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-------ee-cCCCcEEEEEEccCCC
Confidence 976443 3333 6889999999999999999999999999999988764221 00 1112345788888732
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhh------------------------------------------c
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV------------------------------------------M 457 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~------------------------------------------~ 457 (546)
.. +++ .+.++.+.+|++..+.....+ .
T Consensus 284 ~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 284 KN-------YIA----SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp GG-------EEE----EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred ce-------EEE----EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 11 122 223344555654432111100 0
Q ss_pred CCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCC
Q 009022 458 DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 493 (546)
Q Consensus 458 ~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~ 493 (546)
.++...+.++ +|+|+|++|++++++.+.||++...
T Consensus 353 ~~~~~~~~~~-~~spdg~~la~~~~~~~~i~~~~~~ 387 (814)
T 3mkq_A 353 GSVDVFPQSL-AHSPNGRFVTVVGDGEYVIYTALAW 387 (814)
T ss_dssp CCCSSCCSEE-EECTTSSEEEEEETTEEEEEETTTT
T ss_pred CCCccCCcee-EECCCCCEEEEecCCEEEEEECccc
Confidence 1222345566 8999999999988999999997543
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=271.52 Aligned_cols=291 Identities=16% Similarity=0.201 Sum_probs=213.3
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEec-CCCCEEEEEeCCCeEEEEECCC---Cceee-e
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVSCTDLET---GLALS-L 252 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~---~~~~~-~ 252 (546)
|+|++ ..+++++ .|+.. ++.+..+..+|...|++++|+| + +.+|++|+.||.|++||+.+ +.... .
T Consensus 35 f~~~~-~~~~~~~------~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPIQ-EIVRSPN------MGNLR-GKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCCC-CCCCCCC------GGGCC-CCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCcc-ccccccc------ccccc-ceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCccccee
Confidence 77887 4566554 48844 5556666578999999999999 7 99999999999999999876 43111 1
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC---CCCCCcce-------EEeec--CCCcEEEEE--
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR---TNSRSGEA-------ILIHR--KGSKVVGLH-- 318 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~-------~~~~~--~~~~i~~~~-- 318 (546)
.... +...|.+++|+|++.+|++++.||.|++||+. .+...... +.... +...+.++.
T Consensus 106 ~~~~--------h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 177 (437)
T 3gre_A 106 LTYD--------CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177 (437)
T ss_dssp EEEE--------CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE
T ss_pred eecc--------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEE
Confidence 1111 11259999999999999999999999999995 33222110 01111 344566666
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
++| ++.+|++++.|+.|++||+++.+....+....|...|++++|+|++.+|++|+.||.|++||+++++...
T Consensus 178 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~------ 250 (437)
T 3gre_A 178 VNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR------ 250 (437)
T ss_dssp ECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE------
T ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE------
Confidence 556 7889999999999999999875543333322388999999999999999999999999999998765421
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC-------------------
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------------- 459 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~------------------- 459 (546)
...+.......+++|+|.-.. .+.+++ +|+.|+.|+|||+.+++++..+.++
T Consensus 251 -~~~~~~~~~v~~~~~~~~~s~-----~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 251 -SWSFGDHAPITHVEVCQFYGK-----NSVIVV---GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp -EEBCTTCEEEEEEEECTTTCT-----TEEEEE---EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred -EEecCCCCceEEEEeccccCC-----CccEEE---EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 111122223346756553111 167777 8999999999999999877766644
Q ss_pred ------CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 460 ------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 460 ------~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+...+.++ +|+ ++++|++|+ ||.|++||+.+++.+..+.+|.
T Consensus 322 ~~~~~~~~~~v~~l-~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 322 NFCGIRSLNALSTI-SVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp CCCCCCSGGGGCCE-EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred eecccccCCceEEE-EEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 33456666 788 779999999 9999999999999998888753
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-31 Score=258.70 Aligned_cols=299 Identities=17% Similarity=0.216 Sum_probs=220.4
Q ss_pred eeccCCCcccccccccc-ccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeecc-ccCCCeEEEEEcC
Q 009022 103 LCKMPGHTTMSCPHRVA-TEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIR-YHSRRVTCLEFHP 180 (546)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~ 180 (546)
....++|........+. ....+++++.+....+|+..... ....+. .|...|++++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~ 144 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSH 144 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECT
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECC
Confidence 34445666433333332 23456777777887787643211 112233 3899999999999
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC-CCceeeeeecCCCC
Q 009022 181 TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNPNG 259 (546)
Q Consensus 181 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 259 (546)
++ .+|++|+.||.|+|||+.++.....+ .+|...|.+++|+ +.+|++++.||.|++||+. .......+..+..
T Consensus 145 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 218 (401)
T 4aez_A 145 DG-SFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS- 218 (401)
T ss_dssp TS-SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-
T ss_pred CC-CEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-
Confidence 99 79999999999999999998887777 6899999999995 5699999999999999998 4455555554433
Q ss_pred CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe--CCCeEE
Q 009022 260 WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG--NDHFAR 337 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~--~dg~i~ 337 (546)
.|.+++|+|++.+|++++.|+.|++||+++..... ....+...|.+++|+|....++++++ .|+.|+
T Consensus 219 --------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 219 --------EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp --------CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred --------CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---EecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 59999999999999999999999999999865432 34456678999999995556777765 799999
Q ss_pred EEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCCCCCCCcceeeccCCc-ccCCceeEEe
Q 009022 338 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT--SQDNRLRIWDSIFGNLDSPSREIVHSHDFN-RHLTPFRAEW 414 (546)
Q Consensus 338 iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 414 (546)
+||+++.. .+..+.+...|.+++|+|++.+|+++ +.||.|++|++.++.... ...+. .......+.|
T Consensus 288 i~d~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-------~~~~~~h~~~v~~~~~ 357 (401)
T 4aez_A 288 FWNAATGA---RVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK-------QVDIPAHDTRVLYSAL 357 (401)
T ss_dssp EEETTTCC---EEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE-------EEEEECCSSCCCEEEE
T ss_pred EEECCCCC---EEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee-------EEEecCCCCCEEEEEE
Confidence 99998644 44445577889999999999999995 489999999998754311 11111 1223457899
Q ss_pred cCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 415 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
+|+ |.+++ +++.|+.|++|++.+++.+......
T Consensus 358 s~d---------g~~l~---s~~~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 358 SPD---------GRILS---TAASDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp CTT---------SSEEE---EECTTSEEEEEECCC----------
T ss_pred CCC---------CCEEE---EEeCCCcEEEEECCCCccccccccc
Confidence 998 77777 7899999999999999887765443
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-32 Score=264.77 Aligned_cols=304 Identities=12% Similarity=0.056 Sum_probs=220.7
Q ss_pred CCCccccccccccc-----cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 107 PGHTTMSCPHRVAT-----EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 107 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
.+|...+....+.+ ...+++++.+....+|+.......... .......|...|++++|+|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADADENFYTCAWTYD 80 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCTTCCEEEEEEEEC
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCCCCcEEEEEeccC
Confidence 46774443333332 334566665667777765433221100 00111237788999999999
Q ss_pred ----CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 182 ----NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 182 ----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
+ .+|++|+.||.|+|||+.+++....+ .+|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+....
T Consensus 81 ~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 81 SNTSH-PLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp TTTCC-EEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred CCCCC-CEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 5 69999999999999999998887777 68999999999999339999999999999999999998877763110
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcce-------------------------EEeecCCC
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-------------------------ILIHRKGS 312 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------~~~~~~~~ 312 (546)
.+...|.+++|+|++.+|++++.||.|++||+++++..... .....+..
T Consensus 159 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 159 ------GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp ------SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ------cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 11125999999999999999999999999999875432111 11122666
Q ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC-----------ceeeec-CCCCcEEEEEEeCC--CCEEEEEeCCC
Q 009022 313 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG-----------SSLCDL-PHKRVVNSAYFSPS--GSKILTTSQDN 378 (546)
Q Consensus 313 ~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~-~~~~~v~~~~~~p~--~~~l~s~s~dg 378 (546)
.|.+++|+ +.+|++++.|+.|++||+++.... ..+..+ .|...|++++|+|+ +++|++++.||
T Consensus 233 ~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 233 YVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred eEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 89999997 479999999999999999765431 112222 68889999999999 99999999999
Q ss_pred cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 379 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
.|++||+.+++...........+ ........++|+|+ |++++ +++.|+.|+|||+.+
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~---------~~~l~---s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLTHH--KCGAAIRQTSFSRD---------SSILI---AVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEECCT--TCCSCEEEEEECTT---------SSEEE---EEETTSEEEEEEC--
T ss_pred cEEEEECCCCCCccccceEEccc--ccCCceEEEEeCCC---------CCeEE---EEeCCCEEEEEEecC
Confidence 99999999876432111111111 11233467899998 77777 789999999999853
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-32 Score=283.43 Aligned_cols=261 Identities=15% Similarity=0.192 Sum_probs=204.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC--CceeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVS 240 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~ 240 (546)
.++.+|.+.|++++|+|++ ++|++|+.||.|+||++.. ......+ .+|..+|++++|+|+. +++|++|+.||.|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 5688999999999999999 6899999999999999974 3444444 6899999999998763 68999999999999
Q ss_pred EEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 241 CTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 241 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+||+.++. ....+..+.. .|.+++|+|+ +.++++|+.||.|++||+++...... .....+...|.+
T Consensus 81 vwd~~~~~~~~~~~~~~h~~---------~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~-~~~~~~~~~v~~ 150 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSA---------SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNS 150 (753)
T ss_dssp EEEEETTEEEEEEEECCCSS---------CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC-EEEECCSSCEEE
T ss_pred EEECCCCcccccccccCCCC---------CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce-eEeecCCCceEE
Confidence 99999986 3444433322 5999999999 99999999999999999998754432 245566779999
Q ss_pred EEECCC------------CCCEEEEEeCCCeEEEEECCCCCCC-ceeee-cCCCCcEEEEEEeCC---CCEEEEEeCCCc
Q 009022 317 LHCNPI------------QPELLLSCGNDHFARIWDIRRLEAG-SSLCD-LPHKRVVNSAYFSPS---GSKILTTSQDNR 379 (546)
Q Consensus 317 ~~~~p~------------~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~~~v~~~~~~p~---~~~l~s~s~dg~ 379 (546)
++|+|. ++.+|++|+.||.|++||+++.... ..... .+|...|++++|+|+ +.+|++++.||.
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 999994 4889999999999999999865432 22222 279999999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC
Q 009022 380 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 459 (546)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 459 (546)
|++||+.++..... ..+... ..
T Consensus 231 I~iwd~~~~~~~~~---------------------------------------------------------~~~~~~-~~ 252 (753)
T 3jro_A 231 CIIWTQDNEQGPWK---------------------------------------------------------KTLLKE-EK 252 (753)
T ss_dssp EEEEEESSSSSCCB---------------------------------------------------------CCBSSS-SC
T ss_pred EEEecCCCCCCcce---------------------------------------------------------eEEecc-CC
Confidence 99999976532000 000001 12
Q ss_pred CCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc
Q 009022 460 NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 460 ~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
+...+.++ +|+|+|++|++|+ ||.|+||++..+..
T Consensus 253 ~~~~v~~l-~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 253 FPDVLWRA-SWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CSSCCCCE-EECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCceEEE-EEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 23567777 8999999999999 99999999986543
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.8e-31 Score=254.65 Aligned_cols=297 Identities=13% Similarity=0.087 Sum_probs=217.6
Q ss_pred eeeccCCCccc-ccccccccc-CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEc
Q 009022 102 FLCKMPGHTTM-SCPHRVATE-YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFH 179 (546)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 179 (546)
....+.+|... .+..+.+.. ..+++++.+..+.+|+...... .....+.+|...|++++|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~h~~~v~~~~~~ 127 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----------------TSFIQGMGPGDAITGMKFN 127 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----------------EEEECCCSTTCBEEEEEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----------------ceeeecCCcCCceeEEEeC
Confidence 34455777744 444444444 5778888888888887542111 1122335799999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEec--ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
|++..+|++++.|+.|++||+.+.. ...+. ..|...|.+++|+|+ +.+|++++.|+.|++||+ +++.+..+..+.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 9433799999999999999998643 33332 234588999999999 999999999999999999 466666666544
Q ss_pred CCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFA 336 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 336 (546)
. .|.+++|+|++. +|++++.|+.|++||+++............+...|.+++|+|.++.+|++++.|+.|
T Consensus 205 ~---------~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 205 A---------KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp S---------CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred C---------cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 3 599999999999 999999999999999998655444444446777999999999778999999999999
Q ss_pred EEEECCCCCCCceeeec-----CCC----------CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc
Q 009022 337 RIWDIRRLEAGSSLCDL-----PHK----------RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 401 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~-----~~~----------~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 401 (546)
++||+++......+... .|. ..+..++|+|++++ +++.|+.|++||+.+++.+.. .
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~-------l 346 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ-------L 346 (383)
T ss_dssp EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE-------E
T ss_pred EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee-------e
Confidence 99999887665444321 122 33445666666666 777899999999988765221 1
Q ss_pred CCcccCCce-eEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 402 DFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 402 ~~~~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
....+...+ .++|+|+ |.+++ +|+ |+.|+||++.+
T Consensus 347 ~~~~~~~~~~~~~~s~~---------g~~l~---s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 347 RDPNAAGIISLNKFSPT---------GDVLA---SGM-GFNILIWNRED 382 (383)
T ss_dssp CBTTBCSCCCEEEECTT---------SSEEE---EEE-TTEEEEEECC-
T ss_pred cCCCCCceEEEEEEecC---------ccEEE---Eec-CCcEEEEecCC
Confidence 111122223 4589998 77777 564 89999999864
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-32 Score=265.60 Aligned_cols=317 Identities=12% Similarity=0.084 Sum_probs=225.1
Q ss_pred eccCCCccccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC--
Q 009022 104 CKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-- 181 (546)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-- 181 (546)
..+.+|...+......+ ..+++++.+..+.+|+....... ........+.+|...|++++|+|+
T Consensus 10 ~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccc
Confidence 44567885444444444 67788888888888875432210 012234677899999999999998
Q ss_pred --C---CcEEEEEcCCCcEEEEeCCCCce-----eEEecccC-----CCceEEEEEe----cCCCCE-EEEEeCCCeEEE
Q 009022 182 --N---NHILLSGDKKGQVGVWDFYKVSE-----KIVYGNIH-----SCIVNNIRFN----PTNDGT-VYAASSDGTVSC 241 (546)
Q Consensus 182 --~---~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~i 241 (546)
+ . +|++++.|+.|++|++.+... ...+ ..| ...|.+++|+ |+ +.+ |++++.||.|++
T Consensus 76 ~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 76 RDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYI 152 (397)
T ss_dssp TTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEE
T ss_pred cCCcccc-EEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEE
Confidence 5 4 799999999999999988775 5555 567 5899999999 98 888 999999999999
Q ss_pred EECCC------Cceee-----eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec-
Q 009022 242 TDLET------GLALS-----LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR- 309 (546)
Q Consensus 242 wd~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 309 (546)
||+.+ +..+. .+...... ...+...+.+++|+|++ +|++++.+|.|++||+++.+... ....
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~ 226 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVES--PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQ 226 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECC--SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECC
T ss_pred EeCCccccccccceeeccCcceeeeeecc--ccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE---EEecc
Confidence 99998 55554 43220000 01112258999999999 99999999999999999865443 2333
Q ss_pred --C---CCcEEEEEECCCCCCEEEEEeCC---CeEEEEECCCCCCCceeeecC-------------CCCcEEEEEEeCCC
Q 009022 310 --K---GSKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLP-------------HKRVVNSAYFSPSG 368 (546)
Q Consensus 310 --~---~~~i~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~ 368 (546)
| ...|.+++|+| ++.+|++++.| |.|++||+++.+....+ .. |...|.+++|+|++
T Consensus 227 ~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSL--SVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp C---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEE--CBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCccccee--ccCcccccccccccccCCcEEEEEECCCC
Confidence 5 67899999999 89999999999 99999999865432222 24 89999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc---------------cCCceeEEecCCCCCCcee-EEeeeeee
Q 009022 369 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR---------------HLTPFRAEWDPKDPSESLA-VIGRYISE 432 (546)
Q Consensus 369 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~p~~~~~~~~-~~g~~~~~ 432 (546)
++|++++.||.|++||+.+++....... ....... ......++|+|+....... ..+.+++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~- 380 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNM--HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC- 380 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEEC--CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE-
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEec--ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE-
Confidence 9999999999999999988764321110 0000011 2334678999982100000 0005666
Q ss_pred cCCCCcCcceEEEECCchh
Q 009022 433 NYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 433 ~~~g~~d~~i~iwd~~~~~ 451 (546)
+|+.|+.|++|++.+|+
T Consensus 381 --s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 --CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp --EEETTTEEEEEEEEC--
T ss_pred --EecCCCcEEEEEcCCCC
Confidence 78899999999998764
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=273.19 Aligned_cols=289 Identities=9% Similarity=0.027 Sum_probs=187.8
Q ss_pred EEEEEcCCCcEEEEeCCCCceeE---EecccCCCceEEEEEecC-----CCCEEEEEeCCCeEEEEECCCCceeee--ee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKI---VYGNIHSCIVNNIRFNPT-----NDGTVYAASSDGTVSCTDLETGLALSL--MN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~ 254 (546)
+|++++.|++|+||++.++.... .....|.+.|.+++|+|+ .+.+|++++.||+|++||+.++..... +.
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 34456688999999998765432 112457889999999996 257999999999999999987643210 00
Q ss_pred cCC--CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE--EECCCCC-CEEEE
Q 009022 255 VNP--NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL--HCNPIQP-ELLLS 329 (546)
Q Consensus 255 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~--~~~p~~~-~~l~~ 329 (546)
... ..+.++ ...|.+++|+++ ..|++|+.||.|++||++++..... ....|...|.+| .|+| ++ .+|++
T Consensus 255 ~~~p~~~l~~h--~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~--~~~~H~~~V~sv~~~~s~-~g~~~laS 328 (524)
T 2j04_B 255 CEKPSLTLSLA--DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF--YDQVHDSYILSVSTAYSD-FEDTVVST 328 (524)
T ss_dssp CCSCSEEECCT--TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE--EEECSSSCEEEEEEECCT-TSCCEEEE
T ss_pred ecCceEEEEcC--CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE--EeecccccEEEEEEEcCC-CCCeEEEE
Confidence 000 000111 135999999986 4899999999999999987643322 345566789999 4666 76 89999
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCC--CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHK--RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
++.|++|+|||+++.+....+. +|. ..|.+++|+|++..|++++.|++|++||++++.+... .. .+..
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~--~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~----l~----gH~~ 398 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTV--SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP----LV----SRET 398 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEE--EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE----EE----ECSS
T ss_pred eccCCeEEEEECCCCCcccccc--cccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee----ee----cCCC
Confidence 9999999999998654433332 333 3588999999999999999999999999988664221 11 1122
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC----CCCCcccceeeecCCCcEEEEecCC
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD----PNITTISPVNKLHPRDDVLASGSSR 483 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~v~~~s~~~~~l~sgsdg 483 (546)
.+.+++|+|+ |.+++ +|+.|++|+||++..+ .+..+.. +....+..+ +|+|++..+.. . +
T Consensus 399 ~V~sva~Sp~---------g~~l~---Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v-~~sp~g~~~~~-~-~ 462 (524)
T 2j04_B 399 TITAIGVSRL---------HPMVL---AGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKW-DYSIKDDKYRI-D-S 462 (524)
T ss_dssp CEEEEECCSS---------CCBCE---EEETTTEEECCBSCSS-TTTCC------CCCCEEEEC-BCCSSSCEEEE-C-C
T ss_pred ceEEEEeCCC---------CCeEE---EEECCCEEEEEechHh-hccccccCccceeeeEEEEe-ccCCCCCeEEc-c-C
Confidence 3468899998 77777 8999999999998654 3322211 111134466 89999986533 2 2
Q ss_pred cEEEEcCC-CCCccceeeccceE
Q 009022 484 SIFIWRPK-EKSELVEQKEEMKI 505 (546)
Q Consensus 484 ~i~vwd~~-~~~~~~~~~~~~~~ 505 (546)
.+.+|... ++..+.++.+|...
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp CCCCCC-------------CCCS
T ss_pred CceecccccCCcceeeecCCCce
Confidence 33445443 46667777777654
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.7e-31 Score=245.24 Aligned_cols=253 Identities=16% Similarity=0.173 Sum_probs=195.0
Q ss_pred ccCCCcccc-ccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC--
Q 009022 105 KMPGHTTMS-CPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-- 181 (546)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-- 181 (546)
.+.+|...+ +..+.+....+++++.+.++++|+.... ...++.+|.+|.+.|++++|+|.
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCSSCEEEEEECCGGG
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------CcEEEEEEccccCCeEEEEecCCCc
Confidence 346777443 4444445677888899999999974311 11234678999999999999864
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCcee--eeeecC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLAL--SLMNVN 256 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~ 256 (546)
+ ++|++|+.|++|+|||+.++. ....+ ..|...|.+++|+|+. +.+|++++.|+.|++||+.++... ..+..+
T Consensus 67 g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 67 G-TILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp C-SEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred C-CEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 6 799999999999999998764 33334 6799999999999963 679999999999999999876422 223333
Q ss_pred CCCCCCCCcccceEEEEecCC-------------CCEEEEEeCCCcEEEEeCCCCCCCcc-eEEeecCCCcEEEEEECCC
Q 009022 257 PNGWHGPRTWRMLYGMDINPE-------------KGVVLVADNFGFLYLVDARTNSRSGE-AILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~p~ 322 (546)
.. .|.+++|+|+ +++|++|+.|+.|++||+++...... ...+..|...|.+++|+|
T Consensus 145 ~~---------~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp- 214 (297)
T 2pm7_B 145 AI---------GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP- 214 (297)
T ss_dssp SS---------CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-
T ss_pred cC---------ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-
Confidence 22 5999999997 57999999999999999987653221 224556777999999999
Q ss_pred C---CCEEEEEeCCCeEEEEECCCCCCCceeee---cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 323 Q---PELLLSCGNDHFARIWDIRRLEAGSSLCD---LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 323 ~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
+ +.+|++++.|++|+|||++.......... ..|...|.+++|+|++++|++++.|+.|+||+..
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 6 47999999999999999976432111111 2578899999999999999999999999999975
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.5e-31 Score=257.50 Aligned_cols=279 Identities=17% Similarity=0.232 Sum_probs=213.0
Q ss_pred cccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCC
Q 009022 125 TPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKV 203 (546)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~~ 203 (546)
+.++.++.+.+|++....... ..+..+.+|.+.|++++|+| ++ .+|++|+.||.|+||++.+.
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCC
Confidence 345667777777653322211 11245789999999999999 66 79999999999999999887
Q ss_pred -------ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeee--ecCCCCCCCCCcccceEEEEe
Q 009022 204 -------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDI 274 (546)
Q Consensus 204 -------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~ 274 (546)
.....+ .+|...|.+++|+|++..+|++++.||.|++||+.+++.+..+ ..+.. .|.+++|
T Consensus 115 ~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~v~~~~~ 184 (402)
T 2aq5_A 115 GLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVDW 184 (402)
T ss_dssp CCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS---------CEEEEEE
T ss_pred CCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC---------ceEEEEE
Confidence 344555 6899999999999993379999999999999999999888777 33332 5999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC-cEEEEEECCCCCCEEEEE---eCCCeEEEEECCCCCCCcee
Q 009022 275 NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KVVGLHCNPIQPELLLSC---GNDHFARIWDIRRLEAGSSL 350 (546)
Q Consensus 275 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~ 350 (546)
+|++.+|++++.||.|++||++++....... ..+.. .+.++.|+| ++.+|++| +.++.|++||+++.......
T Consensus 185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred CCCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceE
Confidence 9999999999999999999999866443211 23333 489999999 89999999 78999999999876654444
Q ss_pred eecCCCCcEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeee
Q 009022 351 CDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 429 (546)
Q Consensus 351 ~~~~~~~~v~~~~~~p~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~ 429 (546)
....+...|.+++|+|++.+|++ ++.||.|++|++.+++.. ...... +........++|+|+ +.+
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~---~~~l~~--~~~~~~v~~~~~sp~---------~~~ 327 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF---LHYLSM--FSSKESQRGMGYMPK---------RGL 327 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC---EEEEEE--ECCSSCCSEEEECCG---------GGS
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc---eEeecc--cccCCcccceEEecc---------ccc
Confidence 45578888999999999999865 557999999999876520 111111 112233457899997 555
Q ss_pred eeecCCCCcCcceEEEECCchh
Q 009022 430 ISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 430 ~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
++ +.++.+++|++.++.
T Consensus 328 ~~-----s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 328 EV-----NKCEIARFYKLHERK 344 (402)
T ss_dssp CG-----GGTEEEEEEEEETTE
T ss_pred ce-----ecceeEEEEEcCCCc
Confidence 54 356689999998764
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-31 Score=264.50 Aligned_cols=296 Identities=13% Similarity=0.099 Sum_probs=208.5
Q ss_pred CCCc-ccccccccccc-CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCc
Q 009022 107 PGHT-TMSCPHRVATE-YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNH 184 (546)
Q Consensus 107 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 184 (546)
.+|. .+.+..+.+.. ..+++++.++.+.+|++.... ......+.+|.+.|++|+|+|.+..
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCC
Confidence 3444 34445554433 456778889999999743211 1223456789999999999995437
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEec-ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
+|++|+.||+|+|||+.+........ ..+...+.+++|+|+ +.+|++|+.||.|++||++. +.+..+..+..
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~----- 251 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDG-KELWNLRMHKK----- 251 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSS-CBCCCSBCCSS-----
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCc-ceeEEEecccc-----
Confidence 99999999999999998765443331 233456789999999 99999999999999999974 44444444332
Q ss_pred CcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 264 RTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 264 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
.|.+++|+|++. +|++++.|+.|++||+++............|...|++++|+| ++.+|++++.||.|+|||++
T Consensus 252 ----~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 252 ----KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp ----CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred ----eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence 599999999876 778899999999999998776655555566777999999999 99999999999999999998
Q ss_pred CCCCCceeeecCCC------CcEEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCCCCCCCcceeeccCCc
Q 009022 343 RLEAGSSLCDLPHK------RVVNSAYFSPSGSKILTTS------------QDNRLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 343 ~~~~~~~~~~~~~~------~~v~~~~~~p~~~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
+......+ ..|. ..+..+.|+|++.++++++ .++.|++||+.+++++.. ....
T Consensus 327 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~-------l~~~ 397 (435)
T 4e54_B 327 QWDCPLGL--IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ-------LYDP 397 (435)
T ss_dssp SSSSEEEE--CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE-------ECCS
T ss_pred CCccceEE--ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE-------EeCC
Confidence 76543222 1221 1234456777777776664 235799999998865321 1001
Q ss_pred ccCCceeE-EecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhh
Q 009022 405 RHLTPFRA-EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 405 ~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
......++ +|+|+ |.+++ +|+ |+.|+||++++|+..
T Consensus 398 ~~~~v~s~~~fspd---------g~~la---sg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 398 ESSGISSLNEFNPM---------GDTLA---SAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SCCCCCCEEEECTT---------SSCEE---EEC-SSEEEECCCC-----
T ss_pred CCCcEEEEEEECCC---------CCEEE---EEc-CCcEEEEECCcCeee
Confidence 11112233 68998 77776 454 788999999988753
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.4e-31 Score=258.00 Aligned_cols=269 Identities=19% Similarity=0.282 Sum_probs=202.3
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC----------CceeEEecccCCCceEEEEEecCCCCEEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 232 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 232 (546)
...+.+|.+.|++++|+|++..+|++|+.+|.|+||++.. ......+ .+|...|.+++|+|++..+|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 3556789999999999998447999999999999999976 3445555 6899999999999993339999
Q ss_pred EeCCCeEEEEECCCCcee-------eeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcce
Q 009022 233 ASSDGTVSCTDLETGLAL-------SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEA 304 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 304 (546)
|+.||.|++|++.++... ..+..+. ..|.+++|+| ++.+|++++.+|.|++||+++.......
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~---------~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHT---------AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCS---------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCC---------CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 999999999999874321 1222221 2599999999 7889999999999999999987433333
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCC-EEEEEeCCCcEEE
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS-KILTTSQDNRLRI 382 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~l~s~s~dg~i~v 382 (546)
.....+...|++++|+|....+|++|+.||.|++||+++... .+..+ .|...|++++|+|++. +|++++.||.|+|
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 344567779999999993334799999999999999986432 23333 6899999999999884 7999999999999
Q ss_pred EECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCC
Q 009022 383 WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT 462 (546)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 462 (546)
||+.......... ...++ ..+++..+.+|. .
T Consensus 349 wd~~~~~~~~~~~----------------------------------------~~~~~--------~~~~~~~~~~h~-~ 379 (430)
T 2xyi_A 349 WDLSKIGEEQSTE----------------------------------------DAEDG--------PPELLFIHGGHT-A 379 (430)
T ss_dssp EEGGGTTCCCCHH----------------------------------------HHHHC--------CTTEEEECCCCS-S
T ss_pred EeCCCCccccCcc----------------------------------------ccccC--------CcceEEEcCCCC-C
Confidence 9997532110000 00000 001112223333 6
Q ss_pred cccceeeecCCCc-EEEEec-CCcEEEEcCCCC
Q 009022 463 TISPVNKLHPRDD-VLASGS-SRSIFIWRPKEK 493 (546)
Q Consensus 463 ~i~~v~~~s~~~~-~l~sgs-dg~i~vwd~~~~ 493 (546)
.+..+ +|+|++. +|++++ ||.|+||++..+
T Consensus 380 ~v~~~-~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 380 KISDF-SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEE-EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CceEE-EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 67787 9999999 888888 999999998753
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-32 Score=262.44 Aligned_cols=255 Identities=9% Similarity=0.109 Sum_probs=194.0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 288 (546)
..+..+|++++|+|+ +++|++++.|+.|++|++.++ ..+..+..+.. .|.+++|+|++++|++++.|+
T Consensus 8 ~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK---------IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp EECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS---------CEEEEEECTTTCCEEEEETTS
T ss_pred ecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCc---------eEEEEEEeCCCCEEEEEeCCC
Confidence 347789999999999 999999999999999999988 55555544332 599999999999999999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-C-CCCcEEEEEEeC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-P-HKRVVNSAYFSP 366 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~p 366 (546)
.|++||+.++...........+...|.+++|+| ++.+|++++.|+.|++||+++.........+ . |...|++++|+|
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999999998763333445566777999999999 9999999999999999999876532233333 4 899999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCC-----------CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGNLDSP-----------SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
++++|++++.|+.|++||+........ ....... +.......+++|+|+ |++++ +
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~---------~~~l~---~ 222 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--YPSGGWVHAVGFSPS---------GNALA---Y 222 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--CCCSSSEEEEEECTT---------SSCEE---E
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc--ccCCceEEEEEECCC---------CCEEE---E
Confidence 999999999999999999975543221 1111111 222333467899998 67777 7
Q ss_pred CCcCcceEEEECCchhh----hHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCC
Q 009022 436 GAALHPIDFIDITTGQL----VAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 436 g~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~ 492 (546)
++.|+.|++||+.+++. +..+.+|. ..+.++ +|+|++++|++|+++.+.+|+...
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQPPRALITVKLSQ-LPLRSL-LWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp EETTTEEC-CEECSTTSCEEECCCEECSS-SCEEEE-EEEETTEEEEEESSSSEEEECCCC
T ss_pred EeCCCcEEEEECCCCCCcceeeEeecCCC-CceEEE-EEcCCCCEEEEEcCCcEEEEEeCC
Confidence 88999999999999988 77777776 677787 999999999999965566777653
No 94
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.6e-31 Score=250.39 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=202.0
Q ss_pred eeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCCeEEE
Q 009022 163 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSC 241 (546)
Q Consensus 163 ~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~i 241 (546)
+..+.+|...|++++|+|+| ++|++|+.++ ++||++.+....... +...+..++|.+. ++.+ ++++.|+.|++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR-TNYVAFVTGVKEVVHI 85 (355)
T ss_dssp -------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT-SSEEEEECSSTTEEEE
T ss_pred ccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC-CCEEEEEECCccEEEE
Confidence 34568899999999999999 6899988775 889998876555443 2235888899988 6666 56778899999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCC-CCCcceEEeecCCCcEEEEEEC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-SRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
||+.+++.+..+..+. .|.++.|+++. ++++ .++.|++||+.+. +....... +...++++
T Consensus 86 Wd~~~~~~~~~~~~~~----------~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s 146 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDA----------PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFS 146 (355)
T ss_dssp EETTTTEEEEEEECSS----------CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEE
T ss_pred EECCCCcEEEEEECCC----------ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEE
Confidence 9999999888776432 48999998764 4443 4789999999987 54443322 33445566
Q ss_pred CCCCCEEEE--EeCCCeEEEEECCCCCCC-------------c-eeeecCCCCcEEEEEEeCCCCEEEEEeCCCc-EEEE
Q 009022 321 PIQPELLLS--CGNDHFARIWDIRRLEAG-------------S-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-LRIW 383 (546)
Q Consensus 321 p~~~~~l~~--~~~dg~i~iwd~~~~~~~-------------~-~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~-i~vw 383 (546)
+ .++++ |+.+|.|++||+++.... . .....+|...|++++|+|++.+|++|+.|++ |++|
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 5 55665 678999999999864310 0 2223379999999999999999999999998 9999
Q ss_pred ECCCCCCCCCCcceeeccCCc-ccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH--hhc---
Q 009022 384 DSIFGNLDSPSREIVHSHDFN-RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA--EVM--- 457 (546)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~--~~~--- 457 (546)
|+.+++.+.. .... ......+++|+|+ |.+++ +++.|++|+|||+..+.... .+.
T Consensus 224 d~~~~~~~~~-------~~~g~h~~~v~~~~~s~~---------~~~l~---s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 224 KTEDGVLVRE-------FRRGLDRADVVDMKWSTD---------GSKLA---VVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp ETTTCCEEEE-------EECTTCCSCEEEEEECTT---------SCEEE---EEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred ECCCCcEEEE-------EEcCCCCCcEEEEEECCC---------CCEEE---EEECCCEEEEEEccCCCCccccccccee
Confidence 9998765321 1101 2233467999998 77887 88999999999997653111 110
Q ss_pred -----------------CCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCc
Q 009022 458 -----------------DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 458 -----------------~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
.........+ +|++++++|++++ ||.+++|++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKI-AWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEE-EESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eccccccccceeEEEeccCCCCCceEE-EEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0111112334 8999999999999 99999999876543
No 95
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-30 Score=250.36 Aligned_cols=304 Identities=12% Similarity=0.123 Sum_probs=232.5
Q ss_pred eeccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC
Q 009022 103 LCKMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT 181 (546)
Q Consensus 103 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 181 (546)
...+.+|... .+..+.+....+++++.+....+|+... ...+..+.+|...|++++|+|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-------------------GERLGTLDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------chhhhhhhhcCCcEEEEEEcCC
Confidence 3455778844 4444444456677777777877775322 2334678899999999999999
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCceeeeeecC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~ 256 (546)
+ ++|++++.||.|+|||+.+++....+. |...|.+++|+|+ +.+|++++.+ |.|++|++..+.....+...
T Consensus 86 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 86 T-KYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp S-SEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 9 789999999999999999988887774 8899999999999 9999999998 99999999876543322211
Q ss_pred CC----CCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 257 PN----GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 257 ~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
.. ....+.....+.+++|+|++++|++++.+|.|++||+++.... ......+...|.+++|+| ++.+|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSP-DLTYFITSSR 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECC-CCCEEEEecC
Confidence 10 0011111125999999999999999999999999999874322 223445666899999999 9999999999
Q ss_pred CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC--------------cEEEEECCCCCCCCCCccee
Q 009022 333 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--------------RLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 333 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~ 398 (546)
|+.|++||+++.. .+..+.+...+.+++|+|++.++++++.++ .+++||+.+++.... .
T Consensus 239 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~ 311 (369)
T 3zwl_B 239 DTNSFLVDVSTLQ---VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR----V 311 (369)
T ss_dssp TSEEEEEETTTCC---EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE----E
T ss_pred CceEEEEECCCCc---eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh----e
Confidence 9999999997644 344445788899999999999999999988 899999987764221 1
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 455 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~ 455 (546)
. ........++|+|+ |++++ +++.|+.|+||++.++.....
T Consensus 312 ~----~~~~~v~~~~~s~~---------~~~l~---s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 312 Q----GHFGPLNTVAISPQ---------GTSYA---SGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp E----CCSSCEEEEEECTT---------SSEEE---EEETTSEEEEEEECHHHHTCC
T ss_pred e----cccCcEEEEEECCC---------CCEEE---EEcCCCeEEEEECccccchhH
Confidence 1 11223357899998 77777 789999999999998765443
No 96
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.8e-31 Score=260.59 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=215.5
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc---eeEEec-------------------------------------
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYG------------------------------------- 210 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~------------------------------------- 210 (546)
.++.+++|+|+| ++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 478999999999 566665 47899999998877 333321
Q ss_pred ----------------ccCCCceEEEEEecCCCCEE-EEEeCCCeEEEEECC--CCceeeeeecCCCCCCCCCcccceEE
Q 009022 211 ----------------NIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRMLYG 271 (546)
Q Consensus 211 ----------------~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (546)
..|...|.+++|+|+ +.+| ++++.||.|++|++. ++..+..+..+.. ...|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~v~~ 154 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF-------SKRPNA 154 (450)
T ss_dssp -----------------CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC-------SSCEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccC-------CCCceE
Confidence 124447999999999 8775 889999999999999 8877777653211 125999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCc-ceEEeecCCCcEEEEEECCCC---CCEEEEEeCCCeEEEEECCCCCCC
Q 009022 272 MDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQ---PELLLSCGNDHFARIWDIRRLEAG 347 (546)
Q Consensus 272 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~ 347 (546)
++|+|++.+|++++.+|.|++|++.+..... .......|...|.+++|+| + +.+|++|+.|+.|++||+++....
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999999999999999999998876543 2223345666899999999 7 889999999999999999765432
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce--eeccC---------------CcccCCce
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI--VHSHD---------------FNRHLTPF 410 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~---------------~~~~~~~~ 410 (546)
..+ ..+|...|.+++|+ ++.+|++++.|+.|++||+.+++++...... ..... ........
T Consensus 234 ~~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 234 DKW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 111 23799999999999 9999999999999999999988753221100 00000 01112234
Q ss_pred eEEecCCCCCCceeEEeeeeeecCCCC-cCcceEEEEC--Cch---hhhHhhcCCCCCcccceeeecCCCcEEEEec---
Q 009022 411 RAEWDPKDPSESLAVIGRYISENYNGA-ALHPIDFIDI--TTG---QLVAEVMDPNITTISPVNKLHPRDDVLASGS--- 481 (546)
Q Consensus 411 ~~~~~p~~~~~~~~~~g~~~~~~~~g~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--- 481 (546)
.+.|+|+ +++++ +++ .++.|+||++ .++ ..+..+..+ ..+.++ +|+|++.++++++
T Consensus 312 ~i~~~~~---------~~~l~---~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~-~~~~~~~~v~~~~~~~ 376 (450)
T 2vdu_B 312 KIIKSKN---------LPFVA---FFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISL-SAHNDEFQVTLDNKES 376 (450)
T ss_dssp EEEECSS---------SSEEE---EEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEE-EEETTEEEEEECCTTC
T ss_pred EEEEeCC---------CCEEE---EEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEE-EecCCcEEEEEecccC
Confidence 6788886 66665 455 7899999999 555 566666665 667777 8999654444444
Q ss_pred ----CCcEEEEcCCC
Q 009022 482 ----SRSIFIWRPKE 492 (546)
Q Consensus 482 ----dg~i~vwd~~~ 492 (546)
+..|.||.+..
T Consensus 377 ~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 377 SGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSCCCSEEEEEEET
T ss_pred CCCCCcceEEEEEEc
Confidence 34478887654
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=1e-30 Score=252.24 Aligned_cols=255 Identities=10% Similarity=0.100 Sum_probs=203.2
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 288 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 288 (546)
..|..+|++++|+|+ +++|++++.|+.|++|++.+++ .+..+..+.. .|.+++|+|++++|++++.+|
T Consensus 5 ~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG---------QVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp ESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS---------CEEEEEEETTTTEEEEEETTS
T ss_pred cccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC---------cccEEEEeCCCCEEEEEcCCC
Confidence 458999999999999 9999999999999999999987 6666654433 599999999999999999999
Q ss_pred cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee--cCCCCcEEEEEEeC
Q 009022 289 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD--LPHKRVVNSAYFSP 366 (546)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~p 366 (546)
.|++||+.++.... ......+...|.+++|+| ++.+|++++.++.|++||++.......... .+|...|.+++|+|
T Consensus 75 ~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 75 NAYVWTLKGRTWKP-TLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp CEEEEEEETTEEEE-EEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred eEEEEECCCCeeee-eEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 99999997765322 223345667899999999 899999999999999999986553222222 36889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCC-----------CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 367 SGSKILTTSQDNRLRIWDSIFGNLDSP-----------SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
++.+|++++.||.|++||+........ ......... ........+.|+|+ +.+++ +
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---------~~~l~---~ 219 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSAN---------GSRVA---W 219 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSS---------SSEEE---E
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCC---------CCEEE---E
Confidence 999999999999999999764322110 111111111 11223457889997 66666 7
Q ss_pred CCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCC
Q 009022 436 GAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 436 g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~ 492 (546)
++.|+.|++||+.+++.+..+..|. ..+.++ +|+|++++|++|.|+.|++|++.+
T Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 220 VSHDSTVCLADADKKMAVATLASET-LPLLAV-TFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSS-CCEEEE-EEEETTEEEEEETTSSCEEEEEET
T ss_pred EeCCCEEEEEECCCCceeEEEccCC-CCeEEE-EEecCCCEEEEEeCCeEEEEEccC
Confidence 8899999999999999988887765 677777 999999999999899999999987
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.6e-31 Score=254.46 Aligned_cols=267 Identities=10% Similarity=0.042 Sum_probs=194.8
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.....|.+|+|+||| +++||++.|++|+ |....+. + .+|...|.+++|+|+ + .++.+.+|+ +
T Consensus 13 ~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~---l-~gh~~~v~~V~FsPd-g-------~~~~~~~~~---~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKD---I-NCNSKNLFHVKEFPL-E-------FENKLDFEL---A 74 (588)
T ss_dssp CCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSC---C-SSBGGGTEEEEEECC-C-------CCCTTTTSC---C
T ss_pred HhhccEEEEEECCCC-CEEEEEcCCceee--cccccce---e-cCCCccEEEEEECCC-C-------CcceEEEEe---C
Confidence 345789999999999 7999999999999 7554433 3 589999999999999 5 455555554 3
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCC-----cEEEEEECCC
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-----KVVGLHCNPI 322 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~i~~~~~~p~ 322 (546)
+....+..... ..|.+++|+|+|.+||+++.+|.|++|+... ...... +.. .+.+++|+|
T Consensus 75 ~~~~~~~~~~~--------~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSP- 139 (588)
T 2j04_A 75 QQNGLLNSQPV--------CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNP- 139 (588)
T ss_dssp CSSCSSTTSCS--------CCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECS-
T ss_pred CCceEeecCCC--------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcC-
Confidence 33223321111 2599999999999999999999999999543 111122 332 499999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCc----eeee-----cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGS----SLCD-----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~-----~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
++++|++|+.||+|+|||+....... .+.. .+|..+|.+++|+|+| +++++.|++|++|++..+.....
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence 99999999999999999998754211 1222 3678899999999999 88888999999999987663210
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeee--c
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKL--H 471 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~--s 471 (546)
...+.. ........++|+ |.+++ +++ ++.|++|++.+++......+| ...+..+ +| +
T Consensus 218 ~~tL~~----~h~~~V~svaFs-----------g~~LA---Sa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~v-a~~~s 276 (588)
T 2j04_A 218 SRMIQN----ASRRKITDLKIV-----------DYKVV---LTC-PGYVHKIDLKNYSISSLKTGS-LENFHII-PLNHE 276 (588)
T ss_dssp EEEEEC----CCSSCCCCEEEE-----------TTEEE---EEC-SSEEEEEETTTTEEEEEECSC-CSCCCEE-EETTC
T ss_pred eeeecc----cccCcEEEEEEE-----------CCEEE---EEe-CCeEEEEECCCCeEEEEEcCC-CceEEEE-EeeeC
Confidence 001100 111233456665 23444 333 589999999988774333354 4788888 99 9
Q ss_pred CCCcEEEEec-CCcEEEEcCC
Q 009022 472 PRDDVLASGS-SRSIFIWRPK 491 (546)
Q Consensus 472 ~~~~~l~sgs-dg~i~vwd~~ 491 (546)
|++..|++++ ||+ +||...
T Consensus 277 ~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCEEEEECSSCEE-EEEESS
T ss_pred CCCCEEEEEcCCCC-EEEeec
Confidence 9999999999 999 999876
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.7e-30 Score=239.17 Aligned_cols=262 Identities=17% Similarity=0.149 Sum_probs=208.0
Q ss_pred CCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEE
Q 009022 202 KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV 281 (546)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 281 (546)
+.........+|...|++++| |+ +.+|++++.||.|++||+.++.....+..+.. .|.+++|+|++.+|
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l 74 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG---------FLNSVCYDSEKELL 74 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSS---------CEEEEEEETTTTEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCc---------cEEEEEECCCCCEE
Confidence 333333334789999999999 88 89999999999999999999888877766543 59999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEE
Q 009022 282 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 361 (546)
Q Consensus 282 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 361 (546)
++++.+|.|++|++..............+...|.++.|. +.+|++++.||.|++||.. .. ......|...|.+
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~--~~--~~~~~~~~~~v~~ 147 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG--SL--VYNLQAHNASVWD 147 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETT--EE--EEEEECCSSCEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCC--cE--EEecccCCCceeE
Confidence 999999999999998765444444556677799999994 5799999999999999931 11 2222378999999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc
Q 009022 362 AYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 440 (546)
Q Consensus 362 ~~~~p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~ 440 (546)
++|+| ++.+|++++.||.|++||.... ..............+.|+|+ +. ++ +++.++
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~i~~~~~~~~---------~~-~~---~~~~dg 205 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKV---------IKTFSGIHNDVVRHLAVVDD---------GH-FI---SCSNDG 205 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEE---------EEEECSSCSSCEEEEEEEET---------TE-EE---EEETTS
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCce---------EEEEeccCcccEEEEEEcCC---------Ce-EE---EccCCC
Confidence 99999 9999999999999999994321 11111112223357888887 45 33 588899
Q ss_pred ceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccceEE
Q 009022 441 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKII 506 (546)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~~i 506 (546)
.|++||+.+++.+..+.+|. ..+.++ +|+|++ .|++|+ ||.|++||+.+++.+..+..|...+
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~-~~i~~~-~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i 269 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHE-SFVYCI-KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269 (313)
T ss_dssp EEEEEETTTCCEEEEEECCS-SCEEEE-EECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE
T ss_pred eEEEEECCchhhhhhhhcCC-ceEEEE-EEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE
Confidence 99999999999998888776 778888 999999 477777 9999999999999999888877543
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=248.09 Aligned_cols=257 Identities=17% Similarity=0.176 Sum_probs=200.4
Q ss_pred ccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC--
Q 009022 105 KMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-- 181 (546)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-- 181 (546)
.+.+|... .+..+.+....+++++.+..+.+|+.... .......+.+|...|++++|+|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECCGGG
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------------cceeeeEecCCCCcEEEEEeCCCCC
Confidence 34567743 34444444566777778888888875311 12344678899999999999987
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceeeeeecCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMNVNPN 258 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 258 (546)
+ ++|++|+.||.|+|||+.++. ....+ ..|...|.+++|+|+. +.+|++++.||.|++||+.++..........
T Consensus 69 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~- 145 (379)
T 3jrp_A 69 G-TILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA- 145 (379)
T ss_dssp C-SEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC-
T ss_pred C-CEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC-
Confidence 7 799999999999999999876 44444 6799999999999974 6799999999999999999875433322211
Q ss_pred CCCCCCcccceEEEEecC-------------CCCEEEEEeCCCcEEEEeCCCCCCCcce-EEeecCCCcEEEEEECCCC-
Q 009022 259 GWHGPRTWRMLYGMDINP-------------EKGVVLVADNFGFLYLVDARTNSRSGEA-ILIHRKGSKVVGLHCNPIQ- 323 (546)
Q Consensus 259 ~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~- 323 (546)
+...|.+++|+| ++.+|++++.+|.|++||+++....... .....|...|.+++|+| +
T Consensus 146 ------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~ 218 (379)
T 3jrp_A 146 ------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TV 218 (379)
T ss_dssp ------CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CC
T ss_pred ------CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CC
Confidence 112599999999 6999999999999999999876644322 23455677999999999 7
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCCCceeeec---CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 324 --PELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 324 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
+.+|++++.||.|++||+++.......... .|...|++++|+|++++|++++.||.|++|++..+
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 899999999999999999875432222222 48889999999999999999999999999999754
No 101
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-31 Score=249.63 Aligned_cols=274 Identities=9% Similarity=0.017 Sum_probs=199.0
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC---------CC
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE---------TG 247 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~ 247 (546)
.+.+++ .+|++|+.||+|+|||+.+++....+. ...|.++.|+|. +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDK-WVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEE-EEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCC-CEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 445566 789999999999999999988777663 567888889885 9999999999999766 33
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+.+..+.... ...|.+++|+| +++++++++.||.|++||+++++... .....+...+.+++|+| ++.
T Consensus 115 ~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~~i~~~~~~p-dg~ 183 (343)
T 3lrv_A 115 KVLREIEVDS--------ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI--VHSAKSDVEYSSGVLHK-DSL 183 (343)
T ss_dssp CEEEEEECCC--------SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE--EECCCSSCCCCEEEECT-TSC
T ss_pred ceeEEeecCC--------CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE--EEecCCCCceEEEEECC-CCC
Confidence 3333332111 12599999999 99999999999999999999876521 11123444799999999 999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
+|++|+.||.|++||+++..........+|...|++++|+|++.+|++++ ++.|++||+++++......... .+..
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~-~~~~-- 259 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT-IPEF-- 259 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB-C-----
T ss_pred EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc-cccc--
Confidence 99999999999999998766531111114899999999999999999999 5599999999876533221100 0000
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCc-CcceEEEECCchhhhHhhcCCCCCcccceeeecC---CCcEEEEec
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP---RDDVLASGS 481 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~---~~~~l~sgs 481 (546)
.....+++|+|+ |++++ +++. ++.|+||++.++...... ..+..+ +|++ +...|++++
T Consensus 260 ~~~~~~~~~~~~---------g~~l~---~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 260 KTGTVTYDIDDS---------GKNMI---AYSNESNSLTIYKFDKKTKNWTK-----DEESAL-CLQSDTADFTDMDVVC 321 (343)
T ss_dssp --CCEEEEECTT---------SSEEE---EEETTTTEEEEEEECTTTCSEEE-----EEEEEC-CC----CCCCEEEEEE
T ss_pred cccceEEEECCC---------CCEEE---EecCCCCcEEEEEEcccccceEe-----cCceeE-ecCccccccceeEEEe
Confidence 011135899998 77777 5555 899999999765433222 223344 7888 888999988
Q ss_pred -CCcEEEEcCC
Q 009022 482 -SRSIFIWRPK 491 (546)
Q Consensus 482 -dg~i~vwd~~ 491 (546)
||.+.++-..
T Consensus 322 ~d~~~~~~~~~ 332 (343)
T 3lrv_A 322 GDGGIAAILKT 332 (343)
T ss_dssp ETTEEEEEEEC
T ss_pred cCCceEEEEec
Confidence 9999888543
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=5.5e-31 Score=247.61 Aligned_cols=253 Identities=15% Similarity=0.133 Sum_probs=188.9
Q ss_pred ccCCCccc-cccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC--
Q 009022 105 KMPGHTTM-SCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-- 181 (546)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-- 181 (546)
.+.+|... .+..+.+....+++++.+.++++|+..... ..++..+.+|.+.|++++|+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------------~~~~~~l~gH~~~V~~v~~~~~~~ 70 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------------QILIADLRGHEGPVWQVAWAHPMY 70 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------------EEEEEEEECCSSCEEEEEECCGGG
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------------cEEEEEEcCCCccEEEEEeCCCCC
Confidence 34577744 444444556778889999999999754211 1234678899999999999863
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCcee---eeeec
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLAL---SLMNV 255 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~ 255 (546)
+ ++|++|+.|++|+|||+.++. ....+ .+|...|.+++|+|+. +.+|++++.|+.|++|++..+... ..+..
T Consensus 71 ~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 71 G-NILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp S-SCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred C-CEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 6 689999999999999998764 33333 6899999999999973 678999999999999999876322 11111
Q ss_pred CCCCCCCCCcccceEEEEecCC-----------------CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 256 NPNGWHGPRTWRMLYGMDINPE-----------------KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
+. ..+.+++|+|+ +.+|++|+.|+.|++||++..........+..|...|.+++
T Consensus 149 h~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 149 HT---------IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp SS---------SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred cc---------CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 11 24788899987 47899999999999999975432222233456777999999
Q ss_pred ECCCCC----CEEEEEeCCCeEEEEECCCCCCCc--eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 319 CNPIQP----ELLLSCGNDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 319 ~~p~~~----~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
|+| ++ .+|++++.|++|+||++....... ......|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 220 ~sp-~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAP-SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCC-CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ecC-CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999 64 789999999999999997632111 11112578899999999999999999999999999975
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.8e-30 Score=245.32 Aligned_cols=259 Identities=10% Similarity=0.070 Sum_probs=206.4
Q ss_pred cccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc---eeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEe
Q 009022 210 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVAD 285 (546)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 285 (546)
..+|...|.+++|+|+ +.+|++++.||.|++|++.++. ....+..+.. .|.+++|+|++. +|++++
T Consensus 7 ~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---------PLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS---------CEEEEEEEESSSEEEEEEE
T ss_pred ccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC---------ceEEEEECCCCCcEEEEEc
Confidence 3679999999999999 9999999999999999999877 2223323322 599999999999 999999
Q ss_pred CCCcEEEEeC-CCCCCCcceEEeec--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC---------CCCCceeeec
Q 009022 286 NFGFLYLVDA-RTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR---------LEAGSSLCDL 353 (546)
Q Consensus 286 ~dg~i~i~d~-~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~ 353 (546)
.+|.|++|++ .++.. ..... |...|.+++|+| +.+|++++.|+.|++||+++ ... +..+
T Consensus 77 ~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~ 147 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNT 147 (342)
T ss_dssp TTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSS
T ss_pred CCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe---eeEE
Confidence 9999999999 76543 34455 777999999998 78999999999999999975 333 3334
Q ss_pred CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CCCCCCCcceeeccCCcccCCceeEEecC-CCCCCceeEEeeeee
Q 009022 354 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYIS 431 (546)
Q Consensus 354 ~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~g~~~~ 431 (546)
.|...|.+++|+|++ |++++.++.|++||+.+ +.... .. ..........++.|+| + +.+++
T Consensus 148 ~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--~~----~~~~~~~~i~~i~~~~~~---------~~~l~ 210 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--TI----EESGLKYQIRDVALLPKE---------QEGYA 210 (342)
T ss_dssp SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--EE----EECSCSSCEEEEEECSGG---------GCEEE
T ss_pred eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--ee----eecCCCCceeEEEECCCC---------CCEEE
Confidence 588999999999877 99999999999999987 54311 00 1111122345788999 7 66666
Q ss_pred ecCCCCcCcceEEEECCch------hhhHhhcCCCC--------CcccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 432 ENYNGAALHPIDFIDITTG------QLVAEVMDPNI--------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 432 ~~~~g~~d~~i~iwd~~~~------~~~~~~~~~~~--------~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
+|+.++.|++|++... +.+..+..|.. ..+.++ +|+|++++|++|+ ||.|++||+.+++.+
T Consensus 211 ---~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 211 ---CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI-EFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp ---EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ---EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE-EEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 7888999999999887 77777776642 367777 9999999999999 999999999999999
Q ss_pred ceeecc-ceEEEe
Q 009022 497 VEQKEE-MKIIVC 508 (546)
Q Consensus 497 ~~~~~~-~~~i~~ 508 (546)
..+..| ...+.+
T Consensus 287 ~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 287 KNFAKFNEDSVVK 299 (342)
T ss_dssp EECCCCSSSEEEE
T ss_pred hhhhcccCCCceE
Confidence 999887 554433
No 104
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=249.10 Aligned_cols=342 Identities=14% Similarity=0.101 Sum_probs=216.9
Q ss_pred cCCCccc-ccccccc-ccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 106 MPGHTTM-SCPHRVA-TEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 106 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
+.+|... .+..+.+ ....+++++.++...+|+............ ............+|...|++++|+|++.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC------KAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE------CEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec------cccccccccccccCCCcEEEEEEccCCC
Confidence 3457643 3444444 456677888888888887543222111000 0000000112346999999999999544
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCC--CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
.+|++++.||.|++||+.++.....+. +...+.++.|+|.. +.+|++++.+|.|++||+.++..+..+..+..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 187 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ--- 187 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS---
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC---
Confidence 789999999999999999988777764 78899999999862 44999999999999999999988877765443
Q ss_pred CCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceE-------------EeecCCCcEEEEEECCCCCCEE
Q 009022 262 GPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAI-------------LIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~~~~i~~~~~~p~~~~~l 327 (546)
.|.+++|+|++. +|++++.+|.|++||+++........ ....+...|.+++|+| ++.+|
T Consensus 188 ------~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 260 (408)
T 4a11_B 188 ------EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHL 260 (408)
T ss_dssp ------CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEE
T ss_pred ------cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEE
Confidence 599999999998 58899999999999998765322111 1134566899999999 99999
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeec---CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCc
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
++++.||.|++||+++.......... .....+........+..+++++.++.|++||+.+++.... +.
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---------~~ 331 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM---------LK 331 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE---------EC
T ss_pred EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee---------ec
Confidence 99999999999999876553332211 1111222222233556677778899999999988765221 11
Q ss_pred cc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCC-cEEEEec-
Q 009022 405 RH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-DVLASGS- 481 (546)
Q Consensus 405 ~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~-~~l~sgs- 481 (546)
.+ .....++|+|+ |.+++ +|+.||.|++|++.+++.+......... . .+.+.. ..+.+++
T Consensus 332 ~~~~~v~~~~~s~~---------~~~l~---s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 332 GHYKTVDCCVFQSN---------FQELY---SGSRDCNILAWVPSLYEPVPDDDETTTK--S---QLNPAFEDAWSSSDE 394 (408)
T ss_dssp CCSSCEEEEEEETT---------TTEEE---EEETTSCEEEEEECC----------------------------------
T ss_pred cCCCeEEEEEEcCC---------CCEEE---EECCCCeEEEEeCCCCCccCCCCceEec--c---ccccccceeecccCc
Confidence 22 23357899998 67777 7899999999999999887665443311 1 233433 3344455
Q ss_pred CCcEEEEcCC
Q 009022 482 SRSIFIWRPK 491 (546)
Q Consensus 482 dg~i~vwd~~ 491 (546)
++.+++|+..
T Consensus 395 ~~~~~~W~~~ 404 (408)
T 4a11_B 395 EGGTSAWSHP 404 (408)
T ss_dssp ----------
T ss_pred cCceeecCCc
Confidence 8999999865
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.4e-29 Score=246.63 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=213.7
Q ss_pred ccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 009022 124 VTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV 203 (546)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~ 203 (546)
+++.+-+.++.+|+...... .....+.+|...|+||+|+|+| ++||+|+.||+|+|||+.++
T Consensus 118 ~lAvgld~tV~lWd~~tg~~-----------------~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDI-----------------LQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp EEEEEETTEEEEEETTTCCE-----------------EEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTT
T ss_pred EEEEEeCCEEEEEECCCCCE-----------------EEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCC
Confidence 44555577777886432111 1112345788899999999999 79999999999999999999
Q ss_pred ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCCCCCCCCCcccceEEEEecCCCCEEE
Q 009022 204 SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL 282 (546)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 282 (546)
+.+..+ .+|...+.++.|+ +.+|++|+.|+.+++|+...... +..+..+.. .+..+.|+|++.+++
T Consensus 180 ~~~~~~-~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~---------~~~~~~~~~~g~~l~ 246 (420)
T 4gga_A 180 KRLRNM-TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ---------EVCGLRWAPDGRHLA 246 (420)
T ss_dssp EEEEEE-CCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS---------CEEEEEECTTSSEEE
T ss_pred cEEEEE-eCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEeccccc---------ceeeeeecCCCCeee
Confidence 888777 7899999998886 56999999999999999986543 344444433 489999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCcc-eEEeecCCCcEEEEEECCCCCCEEEEE--eCCCeEEEEECCCCCCCceeeecCCCCcE
Q 009022 283 VADNFGFLYLVDARTNSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSC--GNDHFARIWDIRRLEAGSSLCDLPHKRVV 359 (546)
Q Consensus 283 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 359 (546)
+++.|+.+++|+..++..... ......+...|.+++|+|....+++++ +.|++|++||+.++. .+..+.+...+
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~---~~~~~~~~~~v 323 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAHSQV 323 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE---EEEEEECSSCE
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc---cceeeccccce
Confidence 999999999999988664332 234556667899999999777777764 479999999997654 34444456779
Q ss_pred EEEEEeCCCCEEEEEe--CCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCC
Q 009022 360 NSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNG 436 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g 436 (546)
.++.|+|++..+++++ .|+.|+|||+.+++.+. .+.+|. .+.+++|+|+ |.+++ +|
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---------~l~gH~~~V~~l~~spd---------g~~l~---S~ 382 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---------ELKGHTSRVLSLTMSPD---------GATVA---SA 382 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---------EECCCSSCEEEEEECTT---------SSCEE---EE
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---------EEcCCCCCEEEEEEcCC---------CCEEE---EE
Confidence 9999999999988765 68999999998876532 122222 3467899998 77787 89
Q ss_pred CcCcceEEEECCchhhhHhhc
Q 009022 437 AALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 437 ~~d~~i~iwd~~~~~~~~~~~ 457 (546)
+.|++|+|||+....+.....
T Consensus 383 s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 383 AADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp ETTTEEEEECCSCSSCC----
T ss_pred ecCCeEEEEECCCCCccchhh
Confidence 999999999998765554443
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=257.87 Aligned_cols=266 Identities=14% Similarity=0.189 Sum_probs=195.3
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc-----------eeeeeecCCCCC---CCCCcccceEEEEecCC
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-----------ALSLMNVNPNGW---HGPRTWRMLYGMDINPE 277 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~ 277 (546)
.+...|++++|+|+ +.+|++|+.||.|++|++.++. ....+..+...+ ........|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 36789999999999 9999999999999999999876 344554443000 00000025999999999
Q ss_pred C--CEEEEEeCCCcEEEEeCCCCCCCc-------------------------------------ceEEeecCCCcEEEEE
Q 009022 278 K--GVVLVADNFGFLYLVDARTNSRSG-------------------------------------EAILIHRKGSKVVGLH 318 (546)
Q Consensus 278 ~--~~l~~~~~dg~i~i~d~~~~~~~~-------------------------------------~~~~~~~~~~~i~~~~ 318 (546)
+ .+|++++.|+.|++|++....... .......|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 899999999999999987532210 0011245677899999
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceee--------ecCCCCcEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCC
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC--------DLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~-~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|+| ++.+|++| .|+.|++||+++... .+. ..+|...|++++|+|++ .+|++++.||.|++||+++++
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999 99999998 799999999974222 222 23789999999999998 999999999999999999887
Q ss_pred CCCCCcceeeccCC-------ccc-CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc-hhhhHhhcCCC
Q 009022 390 LDSPSREIVHSHDF-------NRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-GQLVAEVMDPN 460 (546)
Q Consensus 390 ~~~~~~~~~~~~~~-------~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~-~~~~~~~~~~~ 460 (546)
...........+.. ..+ .....++|+|+ |++++ +++. +.|+|||+.+ ++++..+.+|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------g~~l~---~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS---------GRYMM---TRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT---------SSEEE---EEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCC---------CCEEE---EeeC-CeEEEEeCCCCccccceeeccc
Confidence 53211111111110 000 13457899997 77777 5666 9999999997 88888887764
Q ss_pred CCc--------------ccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 461 ITT--------------ISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 461 ~~~--------------i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
... +..+ +|+|++++|++|+ ||.|+|||+.+++.+
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~-~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFEC-CWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCE-EECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccccccccccccccccceEE-EECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 110 1125 8999999999999 999999999998765
No 107
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=246.92 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=195.6
Q ss_pred CceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC--
Q 009022 203 VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-- 277 (546)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 277 (546)
.+....+..+|...|.+++|+|++..++++++. ||.|++|++.+++.......... ..|.+++|+|+
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--------KPIKCGTFGATSL 78 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--------SCEEEEECTTCCT
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--------CcEEEEEEcCCCC
Confidence 344444446799999999999993355566665 89999999998877654432111 25999999998
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE------CCCCCCEEEEEeCCCeEEEEECCCCC-CCce
Q 009022 278 -KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC------NPIQPELLLSCGNDHFARIWDIRRLE-AGSS 349 (546)
Q Consensus 278 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~------~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 349 (546)
+.+|++++.+|.|++||+.+..... .....|...|.++.| +| ++.+|++++.||.|++||+++.. ....
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPV--YSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCS--EEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCceEEEecCCCeEEEEeCCCCCccE--EEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 6999999999999999999876222 244566678999955 67 88999999999999999998765 2222
Q ss_pred eeec--CCCCcEEEEE----EeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCce
Q 009022 350 LCDL--PHKRVVNSAY----FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESL 423 (546)
Q Consensus 350 ~~~~--~~~~~v~~~~----~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 423 (546)
+... .+...|.+++ |+|++.+|++++.||.|++||+++++... . .........+.|+|....
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~--~~~~~~v~~~~~~~~~~~--- 223 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-------E--TNIKNGVCSLEFDRKDIS--- 223 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-------E--EECSSCEEEEEESCSSSS---
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-------e--cCCCCceEEEEcCCCCCC---
Confidence 2221 1244899998 67899999999999999999998766411 1 111223457899983100
Q ss_pred eEEeeeeeecCCCCcCcceEEEECCchhhhHhhc-----CCCCCcccceeeecCCCc-EEEEec-CCcEEEEcCCCCC
Q 009022 424 AVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-----DPNITTISPVNKLHPRDD-VLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 424 ~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~v~~~s~~~~-~l~sgs-dg~i~vwd~~~~~ 494 (546)
+.+++ +|+.++.|++||+.+++.+..+. +|. ..+.++ +|+|+++ +|++|+ ||.|+||++..+.
T Consensus 224 ---~~~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 224 ---MNKLV---ATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVWQV-RHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ---CCEEE---EEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEEEE-EEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred ---CCEEE---EECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEEEE-EECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 55666 68889999999999998877765 554 778888 9999998 899998 9999999998653
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=250.75 Aligned_cols=252 Identities=9% Similarity=0.065 Sum_probs=194.6
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCC-----ceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-----IVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
+|...|++++|||+| .+||+++.||.|+||+... ....+ . |.. .|.+++|+|+ +++|++|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEE
Confidence 467899999999999 7899999999999999655 44443 4 554 5999999999 9999999999999999
Q ss_pred ECCCCce-------eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-ecCCCcE
Q 009022 243 DLETGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKV 314 (546)
Q Consensus 243 d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i 314 (546)
++.++.. +..+..+..+ +. ..|.+++|+|+| +++++.|+.|++|++............ ..|...|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~g---h~--~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAG---SK--DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTT---CC--CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred ECCCCccccccceeeeeeeccccc---cc--ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 9998753 3444333322 12 259999999999 888999999999999886642111122 2455689
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEE--eCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF--SPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
.+++|+ ++.||+++ +++|++||+..... .....+|...|..+.| +|++..|++++.+|+ ++|...
T Consensus 230 ~svaFs---g~~LASa~-~~tIkLWd~~~~~~--~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------ 296 (588)
T 2j04_A 230 TDLKIV---DYKVVLTC-PGYVHKIDLKNYSI--SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------ 296 (588)
T ss_dssp CCEEEE---TTEEEEEC-SSEEEEEETTTTEE--EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------
T ss_pred EEEEEE---CCEEEEEe-CCeEEEEECCCCeE--EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------
Confidence 999998 48888887 69999999964332 1333489999999999 999999999999999 999875
Q ss_pred CCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 393 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
.+.++|+ +..++ +.|+++++|+...+. +..+.+ ...|.++ +|||
T Consensus 297 ------------------~~~~spd---------~~l~a-----~~d~~v~lW~~~g~~-l~~~~~--~~~I~~v-a~SP 340 (588)
T 2j04_A 297 ------------------ELHVTAD---------NIIAP-----YLEKKFKKWSTIWNE-FNNYET--TLVIHGI-SLSP 340 (588)
T ss_dssp ------------------SEEEECC---------CSSHH-----HHHHHHHHTTTTTTS-SSSSCC--EEEEEEE-EECT
T ss_pred ------------------cEEECCC---------ceEEE-----EcCCEEEEEECCCCc-eeeecc--ceEEEEE-EECC
Confidence 1346666 44443 348999999875444 444433 3567788 9999
Q ss_pred CCcEEEEec
Q 009022 473 RDDVLASGS 481 (546)
Q Consensus 473 ~~~~l~sgs 481 (546)
+|++||+++
T Consensus 341 dG~~lA~~~ 349 (588)
T 2j04_A 341 DGYSIAIVY 349 (588)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999987
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=238.13 Aligned_cols=280 Identities=13% Similarity=0.187 Sum_probs=214.7
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
.++++++.|+.|++||+.+++....+ ..| ..+.+++|+|+ +.+| ++++.++.|++||+.+++.+..+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----- 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS----- 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-----
Confidence 57899999999999999998877776 344 45899999999 7765 677789999999999999888776543
Q ss_pred CCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE-EEEeCCCeEEEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL-LSCGNDHFARIWD 340 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~~~~~dg~i~iwd 340 (546)
.+.+++|+|++++|+++ ..++.|++||+.+++.... ......+.+++|+| +++.| ++++.++.|++||
T Consensus 75 -----~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 75 -----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT----VKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp -----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----EECSSSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred -----CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE----EeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEE
Confidence 48999999999988655 4679999999998754322 22334789999999 88766 6888899999999
Q ss_pred CCCCCCCceeeecCCCCcEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 341 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
+.+.+. +..+.....+.+++|+|++++| ++++.++.|++||+.+++... .. .....+..++|+|+
T Consensus 145 ~~~~~~---~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------~~--~~~~~~~~~~~~~~-- 210 (391)
T 1l0q_A 145 TVTKAV---INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-------TV--KVEAAPSGIAVNPE-- 210 (391)
T ss_dssp TTTTEE---EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-------EE--ECSSEEEEEEECTT--
T ss_pred CCCCcE---EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-------EE--ecCCCccceEECCC--
Confidence 976443 3334344567999999999887 577788999999998765421 11 11223457889998
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEE-EEec-CCcEEEEcCCCCCccc
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL-ASGS-SRSIFIWRPKEKSELV 497 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l-~sgs-dg~i~vwd~~~~~~~~ 497 (546)
|++++.......++.|++||+.+++.+..+..+. .+..+ +|+|++++| ++++ |+.|++||+.+++.+.
T Consensus 211 -------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 211 -------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--DPAGI-AVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp -------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--SEEEE-EECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--CccEE-EEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 5544421111268999999999998888777654 35566 899999987 5667 9999999999999888
Q ss_pred eeeccceE
Q 009022 498 EQKEEMKI 505 (546)
Q Consensus 498 ~~~~~~~~ 505 (546)
.+..+..+
T Consensus 281 ~~~~~~~~ 288 (391)
T 1l0q_A 281 TMAVGKNP 288 (391)
T ss_dssp EEECSSSE
T ss_pred EEECCcCC
Confidence 88776654
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.6e-30 Score=248.98 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=180.4
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE----ecccCCCceEEEEEec--------CCCCEEEEEe
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV----YGNIHSCIVNNIRFNP--------TNDGTVYAAS 234 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~--------~~~~~l~s~~ 234 (546)
..|...+....+.+++ ++|++|+.|++|+|||+.++..... ...+|...|++|+|+| + +++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVG 163 (393)
T ss_dssp C----------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEE
T ss_pred cccCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEE
Confidence 3455555555566666 7899999999999999988764332 2368999999999998 5 78999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceE--------
Q 009022 235 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAI-------- 305 (546)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-------- 305 (546)
.|++|+|||+.++..+..+..+.. .+.+++|+|++. +|++++.|+.|++||+++++......
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~---------~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSS---------PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSS---------CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCeEEEEECCCCceeeeecCCCC---------CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 999999999998877766655443 489999999874 89999999999999998865432211
Q ss_pred --------------EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEE
Q 009022 306 --------------LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 306 --------------~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 371 (546)
....+...+.++.|++.++..|++++.|+++++||+........+ ..|...+..+.+.|+...+
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI--SDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEE
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE--eeecCccccEEEccccccc
Confidence 112344578888887449999999999999999999765543333 2466666666666654332
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
..... .....|+|... +.+++ +|+.|+.|+|||+.+++
T Consensus 313 ~~~~~--------------------------------~~~~~~~~~~~-------~~~~~---sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 313 SLFPS--------------------------------LLGACPHPRYM-------DYFAT---AHSQHGLIQLINTYEKD 350 (393)
T ss_dssp CSSCC--------------------------------SSCCEECSSCT-------TEEEE---EETTTTEEEEEETTCTT
T ss_pred cccCc--------------------------------ceeEEEccCCC-------CEEEE---EECCCCEEEEEECCCCc
Confidence 21110 01233444321 34444 68899999999999998
Q ss_pred hhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCC
Q 009022 452 LVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~ 491 (546)
.+..+.+|+ ..|.++ +|+|+|++||+++++.+.+|++.
T Consensus 351 ~~~~~~~~~-~~V~sv-afspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLG-MPIVDF-CWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CCEEEEECS-SCEEEE-EECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEecCCC-CcEEEE-EEcCCCCEEEEEeCCCeEEEEEe
Confidence 887777776 678888 99999999999997778888763
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-29 Score=261.90 Aligned_cols=258 Identities=17% Similarity=0.177 Sum_probs=199.6
Q ss_pred ccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCC--
Q 009022 105 KMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPT-- 181 (546)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-- 181 (546)
.+.+|.. +.+..+.+....+++++.++.+.+|+.... .......+.+|.+.|++++|+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-----------------~~~~~~~l~~h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKF 66 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECCTTS
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-----------------CCccceeccCCcCceEEEEecCCCC
Confidence 3467774 444444445567888888888888864311 12345678899999999999988
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc--eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceeeeeecCCC
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMNVNPN 258 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 258 (546)
+ ++|++|+.||.|+|||+.++. ....+ ..|...|.+++|+|+. +.+|++|+.||.|++||+.++..........
T Consensus 67 ~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~- 143 (753)
T 3jro_A 67 G-TILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA- 143 (753)
T ss_dssp C-SEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-
T ss_pred C-CEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-
Confidence 7 799999999999999999876 34444 6799999999999974 6799999999999999998874433322211
Q ss_pred CCCCCCcccceEEEEecC-------------CCCEEEEEeCCCcEEEEeCCCCCCCcce-EEeecCCCcEEEEEECCCC-
Q 009022 259 GWHGPRTWRMLYGMDINP-------------EKGVVLVADNFGFLYLVDARTNSRSGEA-ILIHRKGSKVVGLHCNPIQ- 323 (546)
Q Consensus 259 ~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~- 323 (546)
+...|.+++|+| ++.+|++|+.||.|++||++++...... .....|...|.+++|+| +
T Consensus 144 ------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~ 216 (753)
T 3jro_A 144 ------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TV 216 (753)
T ss_dssp ------CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CC
T ss_pred ------CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CC
Confidence 112599999999 5899999999999999999887543222 23456777999999999 7
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCCCc---eeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 324 --PELLLSCGNDHFARIWDIRRLEAGS---SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 324 --~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
+.+|++++.||.|++||+++..... ......|...|++++|+|++.+|++++.||.|++|++..+.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 8999999999999999998754221 22222588899999999999999999999999999998654
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.1e-28 Score=241.23 Aligned_cols=295 Identities=12% Similarity=0.053 Sum_probs=220.9
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEe----cccCCCceEEEEEecCCCCEEEEEeCCCeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY----GNIHSCIVNNIRFNPTNDGTVYAASSDGTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 239 (546)
..+..+ ..+.+++|+|++ .++++++.++.|++||+.+++..... ..+|...|.+++|+|+ +.++++++.|+.|
T Consensus 117 ~~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v 193 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAV 193 (433)
T ss_dssp EEEECS-SCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEE
T ss_pred EEEcCC-CCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEE
Confidence 334444 456699999955 78899999999999999988766532 2468889999999998 8999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
++||+.+++.+..+..+.. .+.+++|+|+++.++++ +.++.|++||+++++... .......+.+++
T Consensus 194 ~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~ 260 (433)
T 3bws_A 194 HVFDLKTLAYKATVDLTGK---------WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR----KTDKIGLPRGLL 260 (433)
T ss_dssp EEEETTTCCEEEEEECSSS---------SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----ECCCCSEEEEEE
T ss_pred EEEECCCceEEEEEcCCCC---------CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE----EecCCCCceEEE
Confidence 9999999988877764332 48999999999988655 479999999998765432 222334699999
Q ss_pred ECCCCCCEEEEEe--------CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCC
Q 009022 319 CNPIQPELLLSCG--------NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 319 ~~p~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~s~dg~i~vwd~~~~~ 389 (546)
|+| ++.+|++++ .|+.|++||+++.+ .+....+...+.+++|+|+++.+ ++++.++.|++||+.+++
T Consensus 261 ~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 261 LSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp ECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EcC-CCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 999 888888887 48899999997643 34444566689999999999755 666889999999998765
Q ss_pred CCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeee-----eeecCCCCcCcceEEEECCchhhhHhhcCCCCCcc
Q 009022 390 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY-----ISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 464 (546)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~-----~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i 464 (546)
.... +.....+..++|+|+.. .+.+.+.. ....++|+.||.|++||+.+++.+..+..+ ..+
T Consensus 337 ~~~~---------~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~ 403 (433)
T 3bws_A 337 VQKS---------IPVFDKPNTIALSPDGK--YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQP 403 (433)
T ss_dssp EEEE---------EECSSSEEEEEECTTSS--EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSE
T ss_pred EEEE---------ecCCCCCCeEEEcCCCC--EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCC
Confidence 4211 11122345789999832 12221110 000125566889999999999988877663 456
Q ss_pred cceeeecCCCcEEEEe-c-CCcEEEEcCCC
Q 009022 465 SPVNKLHPRDDVLASG-S-SRSIFIWRPKE 492 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sg-s-dg~i~vwd~~~ 492 (546)
..+ +|+|+|++|+++ + |+.|++|++..
T Consensus 404 ~~~-~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 404 TGL-DVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEE-EECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceE-EEcCCCCEEEEEECCCCeEEEEEecC
Confidence 667 899999998875 4 89999999863
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.3e-28 Score=236.03 Aligned_cols=206 Identities=12% Similarity=0.116 Sum_probs=165.3
Q ss_pred cccCCCeEEEEEcCCCCcEEE--EEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 167 RYHSRRVTCLEFHPTNNHILL--SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
..+...+.+++|+|+| ++|+ +++.|++|+|||+.+......+. |...|.+|+|+|+ +.+|++++.+ .+++|+.
T Consensus 130 ~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~ 204 (365)
T 4h5i_A 130 TNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTD-GKVVAYITGS-SLEVIST 204 (365)
T ss_dssp CCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTT-SSEEEEECSS-CEEEEET
T ss_pred CCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccC-CceEEeccce-eEEEEEe
Confidence 3456679999999999 5654 45579999999999988877763 8889999999999 9999999854 5777777
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC----cEEEEeCCCCCCCc-ceEEeecCCCcEEEEEE
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNSRSG-EAILIHRKGSKVVGLHC 319 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~ 319 (546)
.++..+....... +...+.+++|+|++.++++++.++ .+++|++....... .......+...|++++|
T Consensus 205 ~~~~~~~~~~~~~-------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 205 VTGSCIARKTDFD-------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp TTCCEEEEECCCC-------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred ccCcceeeeecCC-------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 7776654432211 112589999999999999998877 68888887654321 22345567778999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-c-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-L-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
+| ++++||+|+.|++|+|||+.+++ .+.. + +|...|++|+|+|+|++||+||.|++|+||++...
T Consensus 278 Sp-dg~~lasgs~D~~V~iwd~~~~~---~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DM-KGELAVLASNDNSIALVKLKDLS---MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CT-TSCEEEEEETTSCEEEEETTTTE---EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CC-CCCceEEEcCCCEEEEEECCCCc---EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 99999999999999999997644 3433 3 79999999999999999999999999999999643
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-27 Score=231.03 Aligned_cols=292 Identities=12% Similarity=0.145 Sum_probs=215.1
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCCeEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGTVS 240 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~ 240 (546)
....+.+|. .+.+++|+|++..++++++.|+.|++||+.+++....+. +...+.+++|+|+ +++|+ +++.++.|+
T Consensus 24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~spd-g~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGSSPQGVAVSPD-GKQVYVTNMASSTLS 99 (391)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CCCCccceEECCC-CCEEEEEECCCCEEE
Confidence 344566564 589999999995455888899999999999988877764 3348999999999 77665 555679999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEE-EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
+||+.+++.+..+..+. .+.+++|+|+++.| ++++.++.|++||+.+++.... ......+.+++|
T Consensus 100 v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~ 165 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGK----------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT----VSVGRSPKGIAV 165 (391)
T ss_dssp EEETTTTEEEEEEECSS----------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----EECCSSEEEEEE
T ss_pred EEECCCCeEEEEEeCCC----------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE----EecCCCcceEEE
Confidence 99999998887765432 37899999999977 6778899999999988654322 222346799999
Q ss_pred CCCCCCEE-EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCCCCCCCc
Q 009022 320 NPIQPELL-LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS---QDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 320 ~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~ 395 (546)
+| ++..| ++++.++.|++||+++.. .+..+.+...+.+++|+|++++|++++ .++.|++||+.+++...
T Consensus 166 ~~-dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~--- 238 (391)
T 1l0q_A 166 TP-DGTKVYVANFDSMSISVIDTVTNS---VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--- 238 (391)
T ss_dssp CT-TSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE---
T ss_pred CC-CCCEEEEEeCCCCEEEEEECCCCe---EEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE---
Confidence 99 77766 677889999999997643 344445677899999999999999888 68999999998765421
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCc------------
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT------------ 463 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~------------ 463 (546)
.+..+..+..+.|+|+ |+++.. +++.++.|++||+.+++.+..+..+....
T Consensus 239 ------~~~~~~~~~~~~~s~d---------g~~l~~--s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 239 ------RIPVGPDPAGIAVTPD---------GKKVYV--ALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp ------EEECCSSEEEEEECTT---------SSEEEE--EETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred ------EEecCCCccEEEEccC---------CCEEEE--EcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 1111223467899998 554421 56788999999999998877765443110
Q ss_pred -ccceeeecCCC----------cEEEEec-CCcEEEEcCCCCCc
Q 009022 464 -ISPVNKLHPRD----------DVLASGS-SRSIFIWRPKEKSE 495 (546)
Q Consensus 464 -i~~v~~~s~~~----------~~l~sgs-dg~i~vwd~~~~~~ 495 (546)
...+..|+.+. ..+...+ |..+++|++.+|..
T Consensus 302 ~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 302 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11111233322 3355566 89999999988763
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=224.92 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=208.2
Q ss_pred ccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC
Q 009022 124 VTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV 203 (546)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~ 203 (546)
+++.+.+.++++|+...... .....+.+|...|++++|+|++ ++|++|+.||+|+||++.++
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~-----------------~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDI-----------------LQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp EEEEEETTEEEEEETTTCCE-----------------EEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTT
T ss_pred EEEEEeCCEEEEEECCCCCE-----------------EEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCc
Confidence 45556678888886432111 1112345788999999999999 79999999999999999999
Q ss_pred ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCCCCCCCCCcccceEEEEecCCCCEEE
Q 009022 204 SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL 282 (546)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 282 (546)
+....+ .+|...+.++.+. +.++++++.++.+++|+....... ..+..+.. .+..+.+.+++.+|+
T Consensus 100 ~~~~~~-~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~ 166 (318)
T 4ggc_A 100 KRLRNM-TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ---------EVCGLRWAPDGRHLA 166 (318)
T ss_dssp EEEEEE-ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS---------CEEEEEECTTSSEEE
T ss_pred eeEEEe-cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccC---------ceEEEEEcCCCCEEE
Confidence 888777 6899888876665 669999999999999999876443 33433332 488999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCcc-eEEeecCCCcEEEEEECCCCCCEE--EEEeCCCeEEEEECCCCCCCceeeecCCCCcE
Q 009022 283 VADNFGFLYLVDARTNSRSGE-AILIHRKGSKVVGLHCNPIQPELL--LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV 359 (546)
Q Consensus 283 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 359 (546)
+++.|+.|++||+++++.... ......+...|.++.++|.....+ ++++.++.|++||..... ......+...+
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~~~~~~v 243 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAHSQV 243 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEEECSSCE
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---ccccccceeee
Confidence 999999999999998664332 233445566899999999555554 356678999999997543 34444677889
Q ss_pred EEEEEeCCCCEEEEEe--CCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCC
Q 009022 360 NSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNG 436 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g 436 (546)
..+.|+|.+..+++++ .|+.|++||+.+++.+.. +.+|. ...+++|+|+ |.+++ +|
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~---------l~gH~~~V~~l~~spd---------g~~l~---S~ 302 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---------LKGHTSRVLSLTMSPD---------GATVA---SA 302 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE---------ECCCSSCEEEEEECTT---------SSCEE---EE
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE---------EcCCCCCEEEEEEcCC---------CCEEE---EE
Confidence 9999999998887765 789999999998765321 22222 3457899998 77777 89
Q ss_pred CcCcceEEEECCch
Q 009022 437 AALHPIDFIDITTG 450 (546)
Q Consensus 437 ~~d~~i~iwd~~~~ 450 (546)
+.|++|+|||+...
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 99999999998654
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.8e-28 Score=238.57 Aligned_cols=274 Identities=16% Similarity=0.251 Sum_probs=200.5
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF 200 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~ 200 (546)
...+++++.++.+.+|+.. +..+...+.+|.+.|++++| ++ .+|++|+.||+|+|||+
T Consensus 143 ~~~l~~g~~dg~i~iwd~~-------------------~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKN-------------------TLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDV 200 (435)
T ss_dssp SSEEEEEESSSCEEEEESS-------------------SCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEES
T ss_pred CCEEEEEeCCCeEEEEeCC-------------------CCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEEC
Confidence 4567777788888888632 12345678899999999999 55 68999999999999999
Q ss_pred CCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee---eeecCCCCCCCCCcccceEEEEecCC
Q 009022 201 YKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPE 277 (546)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~ 277 (546)
.+++....+ .+|...|.+++|+ +.+|++|+.||.|++||+.++.... .+..+. ..|.+++| +
T Consensus 201 ~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~v~~~~~--~ 265 (435)
T 1p22_A 201 NTGEMLNTL-IHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR---------AAVNVVDF--D 265 (435)
T ss_dssp SSCCEEEEE-CCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS---------SCEEEEEE--E
T ss_pred CCCcEEEEE-cCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC---------CcEEEEEe--C
Confidence 999887777 6899999999997 4599999999999999999877652 332222 25888888 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCC
Q 009022 278 KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK 356 (546)
Q Consensus 278 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 356 (546)
+++|++|+.||.|++||++++.... ....+...|.++.++ +.+|++|+.||.|++||++++.. +..+ +|.
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~h~ 336 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVR---TLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGAC---LRVLEGHE 336 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCE---EEEECCCS
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCE---EEEEeCCc
Confidence 8999999999999999999876543 345566789999995 48999999999999999986543 3333 699
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
..|.+++| ++.+|++|+.||.|++||+.++..............+..+. ...++.| .+.+++ +
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------~~~~l~---s 400 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-----------DEFQIV---S 400 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-----------CSSCEE---E
T ss_pred CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-----------CCCEEE---E
Confidence 99999999 78999999999999999997654211110000001111111 1223444 356666 7
Q ss_pred CCcCcceEEEECCchhhhHhh
Q 009022 436 GAALHPIDFIDITTGQLVAEV 456 (546)
Q Consensus 436 g~~d~~i~iwd~~~~~~~~~~ 456 (546)
|+.||.|++||+.++......
T Consensus 401 ~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 401 SSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp CCSSSEEEEEC----------
T ss_pred EeCCCEEEEEECCCCCCcccC
Confidence 999999999999887655544
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.2e-28 Score=219.85 Aligned_cols=281 Identities=14% Similarity=0.086 Sum_probs=169.8
Q ss_pred CeEEEEEcCCC-Cc-EEEEEcCCCcEEEEeCCCC---ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeE-EEEECC
Q 009022 172 RVTCLEFHPTN-NH-ILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV-SCTDLE 245 (546)
Q Consensus 172 ~V~~l~~~~~~-~~-~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i-~iwd~~ 245 (546)
.|.++.|-..| .. .+++++. ..|++|+.... +..... .+|..+|..|.|.|+..+++..+-.+=.+ .++-+-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 35566665544 12 4566664 68999999987 555555 78999999999999744444333221111 011110
Q ss_pred --C-----CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 246 --T-----GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 246 --~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
. ++.+.. .. ....+.++ ++++++.++. .++.|++|++............+.. .++.
T Consensus 119 ~spd~~~~~~~l~s-~g---------~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~ 183 (356)
T 2w18_A 119 CSSDDESEKQVLLK-SG---------NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETI 183 (356)
T ss_dssp C------CCEEEEE-EE---------EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCE
T ss_pred ECCCccccccEEEe-CC---------CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC--ceee
Confidence 0 000000 00 00123332 4455444433 4889999998553222222234444 4555
Q ss_pred EEECC--CCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEE------------EEEeCCCcEE
Q 009022 317 LHCNP--IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKI------------LTTSQDNRLR 381 (546)
Q Consensus 317 ~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l------------~s~s~dg~i~ 381 (546)
++|+| .++.+|++++.|++|+|||+.+++....+... .+...+.+++|+|+|.++ ++|+.|++|+
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 55555 46789999999999999999876543333211 123467888999999886 5678899999
Q ss_pred EEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCcee---EEeeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 382 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA---VIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
+||..+++.+.. +...+ |+.....+. ..+.+++ +|+.|++|+|||+.+|+++.++.+
T Consensus 264 lWd~~tgk~l~v----------------~~~~~-p~Gh~~~~lsg~~sg~~lA---SgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 264 VINPKTTLSVGV----------------MLYCL-PPGQAGRFLEGDVKDHCAA---AILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp EEETTTTEEEEE----------------EEECC-CTTCCCCEEEEEEETTEEE---EEETTSCEEEEETTTCSEEEEECC
T ss_pred EEECCCCEEEEE----------------EEeec-cCCCcceeEccccCCCEEE---EEcCCCcEEEEECCCCcEEEEecC
Confidence 999988764310 00111 221111111 1133456 788999999999999999999988
Q ss_pred CCCCcccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 459 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
|....+..+ +|+|+|++|++|+ |++|+|||+
T Consensus 324 H~~~vvs~v-afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFV-KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEE-EECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEE-EECCCCCEEEEEECCCcEEEecC
Confidence 874444445 8999999999999 999999985
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.9e-28 Score=233.88 Aligned_cols=267 Identities=13% Similarity=0.137 Sum_probs=202.2
Q ss_pred ccCCCcc-ccccccccccCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC--C
Q 009022 105 KMPGHTT-MSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP--T 181 (546)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~ 181 (546)
.+.+|.. +.+..+.+....+++++.+..+.+|+...... .......+.+|...|++++|+| +
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------------NWELSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------CEEEEEEEECCSSCEEEEEECCGGG
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------cceecceeccCCCcEEEEEEcCCCC
Confidence 3467884 44444445556678888888888887542111 1134467889999999999999 4
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCc---------eeEEecccCCCceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceee
Q 009022 182 NNHILLSGDKKGQVGVWDFYKVS---------EKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 182 ~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
+ .+|++|+.||.|+|||+.++. ....+ ..|...|.+++|+|+. +.+|++++.||.|++||+.+++.+.
T Consensus 71 ~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 G-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp C-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred C-CEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 7 799999999999999998763 33444 6899999999999974 6789999999999999999887655
Q ss_pred eeecC----CCCCCCCCcccceEEEEecCC---CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 252 LMNVN----PNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 252 ~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
.+... ............+.+++|+|+ +.++++++.++.+.+|+....... .......|...|.+++|+| ++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p-~~ 226 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-VAAKLPGHKSLIRSISWAP-SI 226 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-EEEECCCCCSCEEEEEECC-CS
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-eeeecCCCCcceeEEEECC-CC
Confidence 44321 011111223346899999997 999999999999988887765432 2334556777999999999 76
Q ss_pred ----CEEEEEeCCCeEEEEECCCCCC-------------------------------------------Cceeeec-CCC
Q 009022 325 ----ELLLSCGNDHFARIWDIRRLEA-------------------------------------------GSSLCDL-PHK 356 (546)
Q Consensus 325 ----~~l~~~~~dg~i~iwd~~~~~~-------------------------------------------~~~~~~~-~~~ 356 (546)
.+|++++.||.|++||++.... ...+..+ +|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 7999999999999999975321 0222222 688
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
..|++++|+|++++|++++.||.|++|++.+++.
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 9999999999999999999999999999987654
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=230.82 Aligned_cols=276 Identities=12% Similarity=0.112 Sum_probs=201.2
Q ss_pred EeCCCCceeEEecccCCCceEEEEEecCC--CCEEEEEeCCCeEEEEECCC-Ccee-eeeecCCCCCCCCCcccceEEEE
Q 009022 198 WDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLET-GLAL-SLMNVNPNGWHGPRTWRMLYGMD 273 (546)
Q Consensus 198 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 273 (546)
|+......... ..+|...|++++|+|+. +.+|++++.||.|++|++.+ +..+ ..+..+.. .|.+++
T Consensus 24 ~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~---------~v~~~~ 93 (368)
T 3mmy_A 24 DNHNPMKDIEV-TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG---------PVLDVC 93 (368)
T ss_dssp CSSCTTCCEEC-SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS---------CEEEEE
T ss_pred CCCCCcceeEe-ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC---------CEEEEE
Confidence 33333333333 37899999999999984 48999999999999999997 5444 44544433 599999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCCCceee
Q 009022 274 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPELLLSCGNDHFARIWDIRRLEAGSSLC 351 (546)
Q Consensus 274 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 351 (546)
|+|++++|++++.||.|++||+.++... ....+...|.+++| +| ++.+|++++.||.|++||+++.+....+
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 167 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVL- 167 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEE-
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEE-
Confidence 9999999999999999999999986533 34556779999999 88 8889999999999999999876543333
Q ss_pred ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeee
Q 009022 352 DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS 431 (546)
Q Consensus 352 ~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 431 (546)
.....+.++.+. ...+++++.++.+.+|++....... .............+.+.+.+.. . ...++
T Consensus 168 --~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~ 232 (368)
T 3mmy_A 168 --QLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEF----RRIESPLKHQHRCVAIFKDKQN--K-----PTGFA 232 (368)
T ss_dssp --ECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEE----EECCCSCSSCEEEEEEEECTTS--C-----EEEEE
T ss_pred --ecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchh----hhccccccCCCceEEEcccCCC--C-----CCeEE
Confidence 234467777665 4588899999999999997643210 0000011111111222222211 0 11133
Q ss_pred ecCCCCcCcceEEEECCch---hhhHhhcCCCCC-----------cccceeeecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 432 ENYNGAALHPIDFIDITTG---QLVAEVMDPNIT-----------TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 432 ~~~~g~~d~~i~iwd~~~~---~~~~~~~~~~~~-----------~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
+++.++.|++|++... ..+..+.+|... .+.++ +|+|++++|++|+ ||.|+|||+.+++.+
T Consensus 233 ---~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 233 ---LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI-AFHPVHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp ---EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE-EECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ---EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE-EEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence 6889999999999887 455566666432 57777 9999999999999 999999999999999
Q ss_pred ceeeccceEEEe
Q 009022 497 VEQKEEMKIIVC 508 (546)
Q Consensus 497 ~~~~~~~~~i~~ 508 (546)
..+..|...+.+
T Consensus 309 ~~~~~~~~~v~~ 320 (368)
T 3mmy_A 309 KTSEQLDQPISA 320 (368)
T ss_dssp EECCCCSSCEEE
T ss_pred EEecCCCCCceE
Confidence 999887765433
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.4e-27 Score=231.92 Aligned_cols=262 Identities=14% Similarity=0.215 Sum_probs=195.7
Q ss_pred cCCCccc-cccccccc-cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCC
Q 009022 106 MPGHTTM-SCPHRVAT-EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN 183 (546)
Q Consensus 106 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 183 (546)
...|... .+..+.+. ...+++++.+..+.+|++........ ..........+.+|...|++|+|+|++.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 3455533 33333332 34566777777888887654221110 0011233467889999999999999985
Q ss_pred cEEEEEcCCCcEEEEeCCCCce-------eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC---ceeeee
Q 009022 184 HILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG---LALSLM 253 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~ 253 (546)
.+|++|+.||.|+||++..... ...+ .+|...|.+++|+|.++.+|++++.||.|++||++++ ..+..+
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 4999999999999999987322 2233 5799999999999965889999999999999999987 344444
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 332 (546)
..+.. .|++++|+|++. +|++|+.+|.|++||+++...... ....|...|.+++|+|....+|++++.
T Consensus 274 ~~~~~---------~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~--~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 274 DAHTA---------EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH--SFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp ECCSS---------CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE--EEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred ecCCC---------CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE--EeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 43332 599999999987 688999999999999998543322 344566699999999933367999999
Q ss_pred CCeEEEEECCCCCC-----------Cceeeec-CCCCcEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 009022 333 DHFARIWDIRRLEA-----------GSSLCDL-PHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 333 dg~i~iwd~~~~~~-----------~~~~~~~-~~~~~v~~~~~~p~~~-~l~s~s~dg~i~vwd~~~~ 388 (546)
|+.|+|||+..... ...+..+ +|...|++++|+|++. +|++++.||.|+||++...
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999976322 1233333 7888999999999998 8999999999999998754
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-27 Score=234.19 Aligned_cols=266 Identities=11% Similarity=0.009 Sum_probs=196.6
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc---eeeeeecCCCC-------------------------------
Q 009022 214 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---ALSLMNVNPNG------------------------------- 259 (546)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~------------------------------- 259 (546)
..++.+++|+|+ +++|+++ .++.|++||+.+++ .+..+..+...
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 357899999999 7766655 57899999999998 55555432210
Q ss_pred --------------CCCCCcccceEEEEecCCCCEE-EEEeCCCcEEEEeCC--CCCCCcceEEeecCCCcEEEEEECCC
Q 009022 260 --------------WHGPRTWRMLYGMDINPEKGVV-LVADNFGFLYLVDAR--TNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 260 --------------~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
.........|.+++|+|++++| ++++.||.|++|++. ++.... .+..+.+...|.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~sp- 159 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK-LRKRFCFSKRPNAISIAE- 159 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE-EEEEEECSSCEEEEEECT-
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee-eeecccCCCCceEEEEcC-
Confidence 0000112259999999999996 889999999999998 555433 233345667899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCc-eeee-cCCCCcEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGS-SLCD-LPHKRVVNSAYFSPS---GSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~~p~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
++.+|++|+.+|.|++|++.+..... .... .+|...|++++|+|+ +++|++++.|+.|++||+.+++....
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---- 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---- 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE----
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee----
Confidence 99999999999999999998765443 2222 268899999999999 99999999999999999987764211
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCC------------------
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------------ 459 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~------------------ 459 (546)
........+.+++|+ + |.+++ +|+.|+.|+|||+.+++++..+..+
T Consensus 236 ---~~~~h~~~v~~~~~s-d---------~~~l~---s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 236 ---WLFGHKHFVSSICCG-K---------DYLLL---SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp ---ECCCCSSCEEEEEEC-S---------TTEEE---EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred ---eecCCCCceEEEEEC-C---------CCEEE---EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 011112233567787 5 66776 7889999999999998876665421
Q ss_pred ------CCCcccceeeecCCCcEEEEec--CCcEEEEcC--CCC---Cccceeeccce
Q 009022 460 ------NITTISPVNKLHPRDDVLASGS--SRSIFIWRP--KEK---SELVEQKEEMK 504 (546)
Q Consensus 460 ------~~~~i~~v~~~s~~~~~l~sgs--dg~i~vwd~--~~~---~~~~~~~~~~~ 504 (546)
....+..+ +|+|++++|++++ |+.|+||++ .++ ..+..+..+..
T Consensus 300 ~~~~~~~~~~v~~i-~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~ 356 (450)
T 2vdu_B 300 NENNDIIEFAVSKI-IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN 356 (450)
T ss_dssp -----CBCCCEEEE-EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred ccccccceEEEEEE-EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence 12345666 8999999999876 899999999 555 55666666644
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-26 Score=219.74 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=175.9
Q ss_pred cCCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC
Q 009022 121 EYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF 200 (546)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~ 200 (546)
...+++++.+..+.+|+...... +..+. ...|.++.|+|. +++|+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~-------------------~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKT-------------------ITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSC-------------------EEEEE--EECCCTTCCCCS----EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcE-------------------EEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEc
Confidence 45678888889988887532211 12222 456778888886 899999999999976
Q ss_pred C---------CCceeEEecccCCCceEEEEEec--CCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccce
Q 009022 201 Y---------KVSEKIVYGNIHSCIVNNIRFNP--TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 201 ~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (546)
. +..........|...|.+++|+| + +.+|++++.||.|++||+.+++.......+.. ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--------~~i 173 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD--------VEY 173 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSS--------CCC
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCC--------Cce
Confidence 5 44434444456788999999999 8 99999999999999999999988655433221 148
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 009022 270 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 348 (546)
Q Consensus 270 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 348 (546)
.+++|+|++.+|++|+.||.|++||++++..... .+.. |..+|.+++|+| ++.+|++++ ++.|++||+++.....
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~--~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS--RFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE--ECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc--EEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 9999999999999999999999999998876522 2233 667999999999 999999999 5599999999876544
Q ss_pred eeeec-CCCCcE--EEEEEeCCCCEEEEEeC-CCcEEEEECCCCC
Q 009022 349 SLCDL-PHKRVV--NSAYFSPSGSKILTTSQ-DNRLRIWDSIFGN 389 (546)
Q Consensus 349 ~~~~~-~~~~~v--~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~ 389 (546)
.+..+ .|...+ .+++|+|++++|++++. ++.|++|++....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 44322 233333 46999999999999998 9999999986543
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.6e-25 Score=213.87 Aligned_cols=247 Identities=11% Similarity=0.166 Sum_probs=177.4
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC-ce
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LA 249 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~ 249 (546)
..+..+++.++++.++++|+.|++|+|||+.+++....+. |...|.+++|+++ .++++. ++.|++||+.++ +.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~---~~~~~~-~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSRE---FIVVSY-GDVISVFKFGNPWKR 132 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS---EEEEEE-TTEEEEEESSTTCCB
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCC---EEEEEE-cCEEEEEECCCCcee
Confidence 3578888988885455778889999999999988877764 7779999999875 444443 789999999987 55
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEE--EeCCCcEEEEeCCCCCCC------------cc-eEEeecCCCcE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV--ADNFGFLYLVDARTNSRS------------GE-AILIHRKGSKV 314 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~------------~~-~~~~~~~~~~i 314 (546)
+..+.. ....+++++ .++++ |+.+|.|++||+.++... .. ......|...|
T Consensus 133 ~~~~~~------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 133 ITDDIR------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp SSCCEE------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred eEEecc------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 544432 133455666 66666 588999999999875411 00 23456777899
Q ss_pred EEEEECCCCCCEEEEEeCCCe-EEEEECCCCCCCceeeecC-CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 315 VGLHCNPIQPELLLSCGNDHF-ARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
.+++|+| ++.+|++|+.|++ |++||+++++....+.. + |...|++++|+|++++|++++.|++|++||+..+....
T Consensus 199 ~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~-g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 199 KMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRR-GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEEC-TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred EEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence 9999999 9999999999998 99999986554322221 3 89999999999999999999999999999998764321
Q ss_pred CC--cceeeccC-----------C--cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 393 PS--REIVHSHD-----------F--NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 393 ~~--~~~~~~~~-----------~--~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
.. ........ + ........++|+|+ |.+++ .++.||.+++|++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d---------~~~l~---~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE---------SSLVV---VWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS---------SEEEE---EETTTTEEEEEEEEEET
T ss_pred cccccceeeccccccccceeEEEeccCCCCCceEEEEeCC---------CCEEE---EEeCCCeEEEEEEEcCC
Confidence 10 00000000 0 00111135678887 77776 67889999999987654
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.3e-27 Score=228.06 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=167.8
Q ss_pred CCccccCCCCCCCCchhhhhcccCCCCCCCCCCccCCCceeeeeccccCCCeEEEEEcC--------CCCcEEEEEcCCC
Q 009022 122 YGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHP--------TNNHILLSGDKKG 193 (546)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--------~~~~~l~s~~~d~ 193 (546)
..+++++.+.++++|+....... ....+..+.||.+.|++|+|+| ++ ++||+|+.|+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~--------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~ 166 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII--------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDC 166 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE--------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTS
T ss_pred CEEEEEeCCCcEEEEECCCCccc--------------eeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCC
Confidence 45777888999999975432211 0122356889999999999998 67 7999999999
Q ss_pred cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC-------------
Q 009022 194 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW------------- 260 (546)
Q Consensus 194 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------- 260 (546)
+|+|||+.+......+ ..|..+|.+++|+|++..+|++++.||+|++||+.+++............
T Consensus 167 tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999887766666 56889999999999845689999999999999999887654432211110
Q ss_pred ---CCCCcccceEEEEec-CCCCEEEEEeCCCcEEEEeCCCCCCCcceEE---------------eecCCCcEEEEEECC
Q 009022 261 ---HGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDARTNSRSGEAIL---------------IHRKGSKVVGLHCNP 321 (546)
Q Consensus 261 ---~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~~~i~~~~~~p 321 (546)
....+...+.++.|. +++..|++++.|+.+++||+........+.. ............++|
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 001122357788886 7999999999999999999987654322110 001111122233444
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 322 I-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 322 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
. ++.++++|+.||.|+|||+.++.... ...+|..+|.+++|+|+|++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNS--IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCE--EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEE--EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 2 33466778899999999998765532 2346888999999999999999998766 666655
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.4e-25 Score=222.38 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=214.9
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC--CCCceeeeee
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL--ETGLALSLMN 254 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 254 (546)
.|+|++ +++++++.+++|.+||..+++....+..++. +..++|+|+ +++|++++.++.|.+||+ .+++.+..+.
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 388988 7899999999999999999988877743444 889999999 999999999999999999 8888877765
Q ss_pred cCCCCCCCCCcccceEEEEecC----CCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeec---------CCCcEEEEEEC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINP----EKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR---------KGSKVVGLHCN 320 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~~~~~ 320 (546)
... .+..++|+| +++++++++ .++.|.+||..+.+....+ .... ....+..+.++
T Consensus 220 ~g~----------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 220 IGI----------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CCS----------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECCEECSSSCCEESCCCEEEEEEC
T ss_pred cCC----------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-cccCcccCccccccCCceEEEEEC
Confidence 322 378999999 999999987 4899999999887655433 2111 12268899999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCCCCCCcceee
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
|....++++...++.|.+||+.+.+... +..+.+...+..+.|+|++++|++++ .+++|.+||+.++++... +.
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~----i~ 363 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL----VD 363 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCE-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE----EE
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcce-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe----ec
Confidence 9555667777889999999998654432 22335666788899999999876655 589999999998875321 11
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCC-cCcceEEEECCc-------hhhhHhhcCCCCCcccceeeec
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA-ALHPIDFIDITT-------GQLVAEVMDPNITTISPVNKLH 471 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~i~~v~~~s 471 (546)
... ..+.......++|+. |.+++ ++. .+++|.||++.+ +++++++.++. .....+ +||
T Consensus 364 ~g~-~ph~g~g~~~~~p~~--------g~~~~---s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v-~~~ 429 (543)
T 1nir_A 364 VGK-TPHPGRGANFVHPKY--------GPVWS---TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFI-KTH 429 (543)
T ss_dssp CSS-SBCCTTCEEEEETTT--------EEEEE---EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCE-ECC
T ss_pred cCC-CCCCCCCcccCCCCC--------ccEEE---eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEE-EcC
Confidence 110 011100011134442 44444 443 578999999998 88888888776 455566 899
Q ss_pred CCCcEEEEec--------CCcEEEEcCCCCCcc
Q 009022 472 PRDDVLASGS--------SRSIFIWRPKEKSEL 496 (546)
Q Consensus 472 ~~~~~l~sgs--------dg~i~vwd~~~~~~~ 496 (546)
|++++|++++ +++|.|||+.+++..
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999999986 579999999999877
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=7.6e-26 Score=205.71 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=145.9
Q ss_pred eeeeccccCCCeEEEEEcCC----CCcEEEEEc--------------------CCCcEEEEeCCC-CceeEEecccCCCc
Q 009022 162 NCAVIRYHSRRVTCLEFHPT----NNHILLSGD--------------------KKGQVGVWDFYK-VSEKIVYGNIHSCI 216 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~----~~~~l~s~~--------------------~d~~i~iwd~~~-~~~~~~~~~~~~~~ 216 (546)
|+..=+-|...|.+|+|+|+ + +++++++ .|+.|++|++.. ++.+..+ .+|...
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~ 180 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPE 180 (356)
T ss_dssp EEEECSSSEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCS
T ss_pred eeeeccccccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCc
Confidence 44433445556666666666 5 4455433 488899999844 5555544 578888
Q ss_pred eEEEEEec---CCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEE------------
Q 009022 217 VNNIRFNP---TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVV------------ 281 (546)
Q Consensus 217 v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------ 281 (546)
++.++|+| + +.+|++++.|++|+|||+.+++.+..+..+... ...+.+++|+|++.++
T Consensus 181 v~~l~fs~~~g~-~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 181 ETILTFAEVQGM-QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp SCEEEEEEEETS-TTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEEEETTEEEEEEC--------
T ss_pred eeeEEeeccCCC-CceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eeeeEEEEECCCCCEEEEeccCCCccee
Confidence 88888888 4 789999999999999999999999988643221 1247888999999887
Q ss_pred EEEeCCCcEEEEeCCCCCCCcceEE--eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCc
Q 009022 282 LVADNFGFLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRV 358 (546)
Q Consensus 282 ~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~ 358 (546)
++|+.|+.|++||..+++....... ..++...+.+..+ .+.++++++.|++|+|||+.+++ .+..+ +|...
T Consensus 254 aSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk---~l~tL~gH~~~ 327 (356)
T 2w18_A 254 SLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQ---CTALLPPVSDQ 327 (356)
T ss_dssp ----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCS---EEEEECCC--C
T ss_pred eccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCc---EEEEecCCCCC
Confidence 5577899999999988764432111 1133333444443 35789999999999999997654 44444 57665
Q ss_pred EE-EEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 359 VN-SAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 359 v~-~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+. +++|+|+|++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 54 6899999999999999999999985
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=5.3e-25 Score=216.90 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=191.1
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE-EEeCCCeEEEEE
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGTVSCTD 243 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd 243 (546)
.+.+|.+.|.+++|+|++ +++++++.|+.|++||+.++.....+ ..|...+.+++|+|+ +.+++ +++.++.|++||
T Consensus 164 ~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPI-RDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEE
T ss_pred cccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEE
Confidence 466899999999999998 79999999999999999988877776 578899999999999 77664 555799999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--------CCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--------NFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
+.+++.+..+..+. .+.+++|+|+++++++++ .++.|++||+.+++.... ..+...+.
T Consensus 241 ~~~~~~~~~~~~~~----------~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~ 306 (433)
T 3bws_A 241 RKTKLEIRKTDKIG----------LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT----IGPPGNKR 306 (433)
T ss_dssp TTTTEEEEECCCCS----------EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE----EEEEECEE
T ss_pred CCCCcEEEEecCCC----------CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee----ccCCCCcc
Confidence 99998776654321 489999999999999987 588999999988654322 22233788
Q ss_pred EEEECCCCCC-EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC---------------CCc
Q 009022 316 GLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---------------DNR 379 (546)
Q Consensus 316 ~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~---------------dg~ 379 (546)
+++|+| ++. ++++++.++.|++||+.+.+ .+..+.+...+.+++|+|++++|++++. ||.
T Consensus 307 ~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 307 HIVSGN-TENKIYVSDMCCSKIEVYDLKEKK---VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp EEEECS-STTEEEEEETTTTEEEEEETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred eEEECC-CCCEEEEEecCCCEEEEEECCCCc---EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 999999 775 55677899999999997543 3444457788999999999999888876 579
Q ss_pred EEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 380 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
|++||+.+++.... +.....+..++|+|+ |++++. ++..++.|++|++..
T Consensus 383 v~~~d~~~~~~~~~---------~~~~~~~~~~~~s~d---------g~~l~~--~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 383 VYVIDTTTDTVKEF---------WEAGNQPTGLDVSPD---------NRYLVI--SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEETTTTEEEEE---------EECSSSEEEEEECTT---------SCEEEE--EETTTTEEEEEEETT
T ss_pred EEEEECCCCcEEEE---------ecCCCCCceEEEcCC---------CCEEEE--EECCCCeEEEEEecC
Confidence 99999988764221 111223467899998 666551 234589999999853
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.2e-25 Score=217.28 Aligned_cols=298 Identities=8% Similarity=0.010 Sum_probs=211.1
Q ss_pred cCCCeEEEEEcCCCCcEEEEEc----CCC----cEEEEeC--CCCceeEE-ecccCCCceEEEEEecCC-----------
Q 009022 169 HSRRVTCLEFHPTNNHILLSGD----KKG----QVGVWDF--YKVSEKIV-YGNIHSCIVNNIRFNPTN----------- 226 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~----~d~----~i~iwd~--~~~~~~~~-~~~~~~~~v~~~~~~~~~----------- 226 (546)
+...|....|.+.|..++++|+ .+| .|+|||+ .+++.+.. ...+|...+..+++++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3457788889999877888886 467 8999999 87776522 226788888888777510
Q ss_pred --CCEEEEEeCC------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC---cEEEEeC
Q 009022 227 --DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDA 295 (546)
Q Consensus 227 --~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~ 295 (546)
+..++.++.+ +.|++||+..+. ...+..+.. .+.+++|+|+|++|++++.++ .|++||+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~---------~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~ 210 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQ---------PLMSPAWSPDGSKLAYVTFESGRSALVIQTL 210 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESS---------CEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCC---------cceeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 3455555543 799999998543 444443322 489999999999999998875 9999999
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEE-EEeCCC--eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 372 (546)
.+++.. ....+...+.+++|+| +++.|+ +++.++ .|++||+.+... .....|...+.+++|+|+|++|+
T Consensus 211 ~tg~~~----~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 211 ANGAVR----QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp TTCCEE----EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEE
T ss_pred CCCcEE----EeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECCCCCEEE
Confidence 986542 3344555899999999 888777 666655 499999976432 33336778899999999999998
Q ss_pred EEeC-CC--cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 373 TTSQ-DN--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 373 s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
+++. ++ .|.+||+.+++... +.. .......+.|+|+ |++++.......+..|++||+.+
T Consensus 283 ~~s~~~g~~~i~~~d~~~~~~~~-----l~~----~~~~~~~~~~spd---------G~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 283 FTSDQAGRPQVYKVNINGGAPQR-----ITW----EGSQNQDADVSSD---------GKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEECTTSSCEEEEEETTSSCCEE-----CCC----SSSEEEEEEECTT---------SSEEEEEEECSSCEEEEEEETTT
T ss_pred EEECCCCCcEEEEEECCCCCEEE-----Eec----CCCcccCeEECCC---------CCEEEEEECcCCceEEEEEECCC
Confidence 8876 44 67788988765311 000 1112346899998 66655211111246899999998
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CC---cEEEEcCCCCCccceeeccceEEE
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR---SIFIWRPKEKSELVEQKEEMKIIV 507 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg---~i~vwd~~~~~~~~~~~~~~~~i~ 507 (546)
++.. .+..+. .+..+ +|+|+|++|++++ ++ .|++|++. +..+..+..+...+.
T Consensus 345 ~~~~-~l~~~~--~~~~~-~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 345 GGVQ-VLSSTF--LDETP-SLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 401 (415)
T ss_dssp CCEE-ECCCSS--SCEEE-EECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEE
T ss_pred CCEE-EecCCC--CcCCe-EEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCc
Confidence 8763 344442 55666 8999999999988 65 79999987 555777777765443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.2e-24 Score=215.29 Aligned_cols=322 Identities=11% Similarity=0.023 Sum_probs=219.8
Q ss_pred eeeeeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeC--CCCceeEEecccCCCceEEEEEec----CCCCEEEEEe
Q 009022 161 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF--YKVSEKIVYGNIHSCIVNNIRFNP----TNDGTVYAAS 234 (546)
Q Consensus 161 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~ 234 (546)
.++.++..+.. +.+++|+|+| ++|++++.|++|++||+ .+.+....+. +...+..++|+| + +++|++++
T Consensus 170 ~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~d-g~~l~v~~ 244 (543)
T 1nir_A 170 KIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYE-DRYTIAGA 244 (543)
T ss_dssp CEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCT-TTEEEEEE
T ss_pred eEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCC-CCEEEEEE
Confidence 34455663333 8999999999 78999999999999999 7777766663 556789999999 9 88888887
Q ss_pred -CCCeEEEEECCCCceeeeeecCCCCCCCC--CcccceEEEEecCCCCE-EEEEeCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 235 -SDGTVSCTDLETGLALSLMNVNPNGWHGP--RTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 235 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
.+++|.+||..+++.+..+........+. .....+.++.++|++.. +++...++.|.+||+.+..... . ....+
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~-~~i~~ 322 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-V-TSIGA 322 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-E-EEEEC
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-e-EEecc
Confidence 48999999999999988876532110000 00114889999997665 5556778999999998865443 1 11223
Q ss_pred CCcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCCCceeeec--CCCCcEEEEEEeCC-CCEEEEEe-CCCcEEEEEC
Q 009022 311 GSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPS-GSKILTTS-QDNRLRIWDS 385 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~-~~~l~s~s-~dg~i~vwd~ 385 (546)
...+.++.|+| ++++|+++ ..+++|.+||+.+++....+... +|......+ ++|+ +.+++++. .+++|.|||+
T Consensus 323 ~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 323 APFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 44688899999 88876655 46899999999876544333321 365444443 5776 66667765 5899999999
Q ss_pred CCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCC----cCcceEEEECCchhhhHhhc----
Q 009022 386 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA----ALHPIDFIDITTGQLVAEVM---- 457 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~----~d~~i~iwd~~~~~~~~~~~---- 457 (546)
.+..-......++...... ....+.+.++|+ |+++......+ .+++|.|||+.+++......
T Consensus 401 ~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~pd---------g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~ 470 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPK---------SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 470 (543)
T ss_dssp CTTTCTTTBTSEEEEEECS-CSCCCCEECCTT---------CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCCCCchhcCeEEEEEEcC-CCCceEEEcCCC---------CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence 8722100001111111111 112346788998 66666221111 26799999999998763221
Q ss_pred ----CCCCCcccceeeecCCCcEEEEe-----c-CCcEEEEcCCCCCccceeecc
Q 009022 458 ----DPNITTISPVNKLHPRDDVLASG-----S-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 458 ----~~~~~~i~~v~~~s~~~~~l~sg-----s-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
..+...+..+ +|+|+|+.|+.+ + ++.|.|||..+++++.+++.+
T Consensus 471 ~~~~~~~~~~~~~~-~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 471 WADLGEGAKRVVQP-EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp HHCCCSSCCEEEEE-EECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred hcccCCCCCceEec-cCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 1223556666 899999998864 4 699999999999999888754
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.3e-23 Score=198.30 Aligned_cols=284 Identities=10% Similarity=0.095 Sum_probs=186.5
Q ss_pred cEEEEEcCCCcEEEEeCCC-CceeEEecccCCCceEEEEEecCCCCEEEEEeCC-CeEEEEECC--CCceeeeeecCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-GTVSCTDLE--TGLALSLMNVNPNG 259 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~~~~~ 259 (546)
.++++++.++.|++|++.. +.........+...+.+++|+|+ +++|++++.+ +.|.+|++. ++............
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 4556668899999999963 32222222347788999999999 8888888876 999999998 55533222221110
Q ss_pred CCCCCcccceEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEE
Q 009022 260 WHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFAR 337 (546)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~ 337 (546)
.+..++|+|++++|++++. ++.|.+||+..+.. ............+.+++|+| ++++|++++ .++.|+
T Consensus 85 --------~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 85 --------SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRIC 154 (343)
T ss_dssp --------CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEE
T ss_pred --------CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-ccccccccCCCCceEEEECC-CCCEEEEecCCCCEEE
Confidence 3778999999998877664 78899999952221 12222223334688999999 888777776 899999
Q ss_pred EEECCCCCCCcee----eecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCC--CCCCCCCcceee--ccCCcccCC
Q 009022 338 IWDIRRLEAGSSL----CDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF--GNLDSPSREIVH--SHDFNRHLT 408 (546)
Q Consensus 338 iwd~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~--~~~~~~~~~~~~--~~~~~~~~~ 408 (546)
+||+.+......+ ........+..++|+|++++|++++ .++.|.+|++.. +++.. ..... ...+.....
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCTTCCSCCC
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--EeeccccCccccccCC
Confidence 9999752221111 1223445788999999999776554 789999999953 33210 00011 111112223
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC----chhhhHhhcCCCCCcccceeeecCCCcEEEEec--C
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT----TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS--S 482 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~----~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--d 482 (546)
+..++|+|+ |+++.. ++..++.|.+|++. +.+.+..+..+. .+..+ +|+|+|++|++++ +
T Consensus 233 ~~~i~~s~d---------g~~l~v--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~~~~~~ 298 (343)
T 1ri6_A 233 AADIHITPD---------GRHLYA--CDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGF-NVDHSGKYLIAAGQKS 298 (343)
T ss_dssp EEEEEECTT---------SSEEEE--EETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCE-EECTTSSEEEEECTTT
T ss_pred ccceEECCC---------CCEEEE--EecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceE-EECCCCCEEEEecCCC
Confidence 346889998 544431 34567899999998 234444444433 26666 8999999888766 7
Q ss_pred CcEEEEcC--CCCC
Q 009022 483 RSIFIWRP--KEKS 494 (546)
Q Consensus 483 g~i~vwd~--~~~~ 494 (546)
+.|.+|++ .+++
T Consensus 299 ~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 299 HHISVYEIVGEQGL 312 (343)
T ss_dssp CEEEEEEEETTTTE
T ss_pred CeEEEEEEcCCCce
Confidence 99999954 4553
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.2e-22 Score=190.56 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=192.7
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEEEECCCCce-eeee
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLA-LSLM 253 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~ 253 (546)
..|.+++..++++++.++.|++||+.+++....+. .+...+ .++|+|+ ++++++++. ++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 34666665778999999999999999988777663 455566 9999999 776665555 88999999999887 5555
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE-EE
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL-LS 329 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~~ 329 (546)
..... +..+++|+|++++++++..++ .|.+||+.+++.... ........+++|+| ++++| ++
T Consensus 80 ~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----~~~~~~~~~~~~sp-dg~~l~~~ 145 (331)
T 3u4y_A 80 QEGQS---------SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----IPIPYDAVGIAISP-NGNGLILI 145 (331)
T ss_dssp EECSS---------CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE----EECCTTEEEEEECT-TSSCEEEE
T ss_pred ccCCC---------CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE----EECCCCccceEECC-CCCEEEEE
Confidence 44332 233489999999999655553 899999988654332 22233679999999 77644 45
Q ss_pred EeCCCe-EEEEECCCCCCCce--eeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 330 CGNDHF-ARIWDIRRLEAGSS--LCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 330 ~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
...++. |.+|++........ .........+..++|+|+|++|+++ ..++.|.+||+.+++....... +..
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~------~~~ 219 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA------VGT 219 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE------EEC
T ss_pred ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee------ccC
Confidence 556688 99999874322111 1222445568999999999966554 4689999999988775111111 111
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh--hHhhcCC---CCCcc---cceeeecCCCcEE
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL--VAEVMDP---NITTI---SPVNKLHPRDDVL 477 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~--~~~~~~~---~~~~i---~~v~~~s~~~~~l 477 (546)
...+..++|+|+ |+++.. +...++.|.+||+.+++. +..+..+ ..... ..+ +|+|+|++|
T Consensus 220 ~~~~~~~~~spd---------g~~l~v--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l 287 (331)
T 3u4y_A 220 NNLPGTIVVSRD---------GSTVYV--LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM-ALNKTETKL 287 (331)
T ss_dssp SSCCCCEEECTT---------SSEEEE--ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE-EECTTSSEE
T ss_pred CCCCceEEECCC---------CCEEEE--EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccce-EECCCCCEE
Confidence 233457889998 554431 344567899999998876 3322221 01111 235 899999988
Q ss_pred EEec--CCcEEEEcCCCCC
Q 009022 478 ASGS--SRSIFIWRPKEKS 494 (546)
Q Consensus 478 ~sgs--dg~i~vwd~~~~~ 494 (546)
++++ ++.|.||++....
T Consensus 288 ~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 288 FISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEETTTTEEEEEETTSCE
T ss_pred EEecCCCCcEEEEEecCCc
Confidence 7654 6899999997654
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4e-23 Score=217.84 Aligned_cols=291 Identities=8% Similarity=0.046 Sum_probs=201.8
Q ss_pred CCCeEEEEEcCCCCcEEEEEcC-CC-----cEEEEeCCCCceeEEecccCC------------------------CceEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDK-KG-----QVGVWDFYKVSEKIVYGNIHS------------------------CIVNN 219 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~~v~~ 219 (546)
...|.+++|+|+| ++|++++. |+ .|++||+.+++....+ ..+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4479999999999 67888887 88 8999999988766555 2332 23889
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCC---ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009022 220 IRFNPTNDGTVYAASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 296 (546)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 296 (546)
++|+|+ +++|++++. +.|++||+.++ ... .+..+. ..+..++|+|+|++|++++. +.|++||+.
T Consensus 114 ~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~---------~~~~~~~~SPDG~~la~~~~-~~i~~~d~~ 180 (741)
T 2ecf_A 114 YQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGE---------GFATDAKLSPKGGFVSFIRG-RNLWVIDLA 180 (741)
T ss_dssp CEECTT-SSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSS---------SCEEEEEECTTSSEEEEEET-TEEEEEETT
T ss_pred eEECCC-CCEEEEEeC-CcEEEEECCCCCcceEE-EcccCC---------cccccccCCCCCCEEEEEeC-CcEEEEecC
Confidence 999999 999998886 89999999987 433 222211 24889999999999999875 699999998
Q ss_pred CCCCCcceEEeecCCC----------------cEEEEEECCCCCCEEEEEeCCC--------------------------
Q 009022 297 TNSRSGEAILIHRKGS----------------KVVGLHCNPIQPELLLSCGNDH-------------------------- 334 (546)
Q Consensus 297 ~~~~~~~~~~~~~~~~----------------~i~~~~~~p~~~~~l~~~~~dg-------------------------- 334 (546)
++..... ...+.. .+..++|+| ++++|++++.++
T Consensus 181 ~g~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 181 SGRQMQL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp TTEEEEC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred CCCEEEe---ccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 7543211 111111 147799999 999999887665
Q ss_pred -------eEEEEECCC-CCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCCCCCCCcceeec
Q 009022 335 -------FARIWDIRR-LEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQ-----DNRLRIWDSIFGNLDSPSREIVHS 400 (546)
Q Consensus 335 -------~i~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~ 400 (546)
.|++||+.+ .+.. .+... .|...+..++| |+|++|++++. +..|++||+.+++... +...
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~ 330 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQ-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV----LAHE 330 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCE-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE----EEEE
T ss_pred CCCCCeeEEEEEECCCCCceE-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE----EEEc
Confidence 788999876 5432 22111 47778999999 99999987764 5679999998876421 1111
Q ss_pred cCCcccC-CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC-chhhhHhhcCCCCCcccceeeecCCCcEEE
Q 009022 401 HDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 401 ~~~~~~~-~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~ 478 (546)
.. .... ....+.|+|+ |++++ ++..++.++||.+. ++. ...+..+. ..+..+.+|+|+|+.|+
T Consensus 331 ~~-~~~~~~~~~~~~spd---------g~~~~---~~~~~g~~~l~~~~~~~~-~~~l~~~~-~~v~~~~~~s~dg~~l~ 395 (741)
T 2ecf_A 331 TS-PTWVPLHNSLRFLDD---------GSILW---SSERTGFQHLYRIDSKGK-AAALTHGN-WSVDELLAVDEKAGLAY 395 (741)
T ss_dssp EC-SSCCCCCSCCEECTT---------SCEEE---EECTTSSCEEEEECSSSC-EEESCCSS-SCEEEEEEEETTTTEEE
T ss_pred CC-CCcCCcCCceEECCC---------CeEEE---EecCCCccEEEEEcCCCC-eeeeeecc-eEEEeEeEEeCCCCEEE
Confidence 11 1111 1235789998 55444 45667878888765 344 55665554 45555536999998776
Q ss_pred E-ec-CC--cEEEEcCCC-CCccceee
Q 009022 479 S-GS-SR--SIFIWRPKE-KSELVEQK 500 (546)
Q Consensus 479 s-gs-dg--~i~vwd~~~-~~~~~~~~ 500 (546)
. ++ ++ .++||++.. +..+..+.
T Consensus 396 ~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 396 FRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 5 55 55 899999864 44344443
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.3e-22 Score=197.56 Aligned_cols=264 Identities=10% Similarity=0.085 Sum_probs=190.8
Q ss_pred eeccccCCCeEEEEEcCC--------------CCcEEEEEcCC------CcEEEEeCCCCceeEEecccCCCceEEEEEe
Q 009022 164 AVIRYHSRRVTCLEFHPT--------------NNHILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN 223 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~--------------~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 223 (546)
..+.+|...+..+++++. +.+ ++.++.+ +.|++||+.... ...+ ..|...|.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~-l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR-IAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE-EEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE-EEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEc
Confidence 457888888888887751 434 4444433 799999998544 3444 4688999999999
Q ss_pred cCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEE-EEeCCCc--EEEEeCCC
Q 009022 224 PTNDGTVYAASSDG---TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGF--LYLVDART 297 (546)
Q Consensus 224 ~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~ 297 (546)
|+ +++|++++.++ .|++||+.+++..... .+.. .+.+++|+|+|+.|+ +++.++. |++||+.+
T Consensus 188 pd-g~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~---------~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 188 PD-GSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR---------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 256 (415)
T ss_dssp TT-SSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSS---------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CC-CCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCC---------cccCEEEcCCCCEEEEEEecCCCceEEEEECCC
Confidence 99 99999999875 9999999998875432 2221 488999999999888 5555554 99999987
Q ss_pred CCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-CC--eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE
Q 009022 298 NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT 374 (546)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 374 (546)
+.. .....+...+.+++|+| +++.|++++. ++ .|++||+.+... .....+...+.+++|+|+|++|+++
T Consensus 257 ~~~----~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 257 GQI----RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp CCE----EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred CCE----EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCEEEEE
Confidence 653 23444556899999999 9998888775 44 688889875432 2222466789999999999999988
Q ss_pred eCC---CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc---ceEEEECC
Q 009022 375 SQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH---PIDFIDIT 448 (546)
Q Consensus 375 s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~---~i~iwd~~ 448 (546)
+.+ ..|++||+.+++... +. .+.....+.|+|+ |++++ .++.++ .|++||+.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~~-----l~-----~~~~~~~~~~spd---------g~~l~---~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQV-----LS-----STFLDETPSLAPN---------GTMVI---YSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EECSSCEEEEEEETTTCCEEE-----CC-----CSSSCEEEEECTT---------SSEEE---EEEEETTEEEEEEEETT
T ss_pred ECcCCceEEEEEECCCCCEEE-----ec-----CCCCcCCeEEcCC---------CCEEE---EEEcCCCccEEEEEECC
Confidence 864 589999998876411 11 1114457899998 65555 333333 79999986
Q ss_pred chhhhHhhcCCCCCcccceeeecCCC
Q 009022 449 TGQLVAEVMDPNITTISPVNKLHPRD 474 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v~~~s~~~ 474 (546)
+..+..+..+. ..+..+ +|+|.-
T Consensus 387 -g~~~~~l~~~~-~~v~~~-~~~~~~ 409 (415)
T 2hqs_A 387 -GRFKARLPATD-GQVKFP-AWSPYL 409 (415)
T ss_dssp -SCCEEECCCSS-SEEEEE-EECCCC
T ss_pred -CCcEEEeeCCC-CCCcCC-cccccc
Confidence 45556666654 678777 899864
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.1e-22 Score=193.03 Aligned_cols=281 Identities=12% Similarity=0.090 Sum_probs=198.4
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCC-ceEEEEEecCCCCEE-EEEeCCCeEEEEECCCCceeeeeecCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWH 261 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 261 (546)
.+|++++.++.|++||+.+++....+..++.. .+..++|+|+ ++++ +++..++.|.+||+.+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 47999999999999999988877766433322 4889999999 6554 56666889999999999887766543210
Q ss_pred CCCcccceEEEEecCCCCEEEEEe------------CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 262 GPRTWRMLYGMDINPEKGVVLVAD------------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 262 ~~~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
.....+.+++|+|++++|+++. .++.|.+||+.+++.... ......+.+++|+| ++++|++
T Consensus 79 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~----~~~~~~~~~~~~s~-dg~~l~~ 151 (337)
T 1pby_B 79 --ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA----FEAPRQITMLAWAR-DGSKLYG 151 (337)
T ss_dssp --EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE----EECCSSCCCEEECT-TSSCEEE
T ss_pred --cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE----EeCCCCcceeEECC-CCCEEEE
Confidence 0011356789999999999886 579999999987654322 12233678899999 8887777
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC------------------------cEEEEEC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN------------------------RLRIWDS 385 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg------------------------~i~vwd~ 385 (546)
+ ++.|++||+.+.+....+....... .+.|+|++.+|+..+..+ .|.+||+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 7 6889999997654322221111112 237899888776554332 4689999
Q ss_pred CCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccc
Q 009022 386 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 465 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 465 (546)
.+++.. . .... .....+..+.|+|+ |+++. .+ ++.|.+||+.+++.+..+..+ ..+.
T Consensus 227 ~~~~~~-~----~~~~--~~~~~~~~~~~s~d---------g~~l~---~~--~~~v~~~d~~~~~~~~~~~~~--~~~~ 283 (337)
T 1pby_B 227 ETGEMA-M----REVR--IMDVFYFSTAVNPA---------KTRAF---GA--YNVLESFDLEKNASIKRVPLP--HSYY 283 (337)
T ss_dssp TTCCEE-E----EEEE--ECSSCEEEEEECTT---------SSEEE---EE--ESEEEEEETTTTEEEEEEECS--SCCC
T ss_pred CCCCce-E----eecC--CCCCceeeEEECCC---------CCEEE---Ee--CCeEEEEECCCCcCcceecCC--Ccee
Confidence 887642 0 0000 11123456889998 65555 22 688999999999887776544 3455
Q ss_pred ceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 466 PVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 466 ~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
.+ +|+|+|++|++++ ++.|.+||+.+++.+..+..+.
T Consensus 284 ~~-~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 284 SV-NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EE-EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eE-EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 66 8999999999888 9999999999999888876653
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=5.2e-22 Score=189.76 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=201.2
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcC-------CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCC-EEEEEeCCCeEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDK-------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVYAASSDGTVS 240 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~ 240 (546)
....+..++|+|++. +|++++. ++.|.+||..+++....+. ....+..++|+|+ ++ ++++...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d-g~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT-TQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT-TTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC-CCEEEEEecCCCEEE
Confidence 456788999999995 5555543 5689999999988777664 3445789999999 66 455556689999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 318 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 318 (546)
+||+.+++.+..+..+............+.+++|+|+++++++++ .++.|.+||+.+++.... .......+.+++
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~ 191 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA---IQNTGKMSTGLA 191 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE---ECCCCTTCCCCE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE---ecCCCCccceEE
Confidence 999999998887766432211111111368899999999888776 478899999987654322 222333578899
Q ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec--CCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCCCCCCCc
Q 009022 319 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 319 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~ 395 (546)
|+| ++++|++++.++.|.+||+.+.+....+... ++...+..++|+|++++|++++. ++.|.+||+.+++....
T Consensus 192 ~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-- 268 (353)
T 3vgz_A 192 LDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK-- 268 (353)
T ss_dssp EET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--
Confidence 999 9999999999999999999865543333221 24567889999999997776665 49999999988765221
Q ss_pred ceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc
Q 009022 396 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 475 (546)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 475 (546)
. ... .+..+.|+|+ |+++.. +...++.|.+||+.+++.+..+..+ .....+ +|+|+|+
T Consensus 269 --~---~~~---~~~~~~~s~d---------g~~l~v--~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~-~~s~dg~ 326 (353)
T 3vgz_A 269 --V---AAP---ESLAVLFNPA---------RNEAYV--THRQAGKVSVIDAKSYKVVKTFDTP--THPNSL-ALSADGK 326 (353)
T ss_dssp --E---ECS---SCCCEEEETT---------TTEEEE--EETTTTEEEEEETTTTEEEEEEECC--SEEEEE-EECTTSC
T ss_pred --E---EcC---CCceEEECCC---------CCEEEE--EECCCCeEEEEECCCCeEEEEEecC--CCCCeE-EEcCCCC
Confidence 1 111 1246788888 443221 3456789999999999988777654 345566 8999999
Q ss_pred EEEEec
Q 009022 476 VLASGS 481 (546)
Q Consensus 476 ~l~sgs 481 (546)
+|+.+.
T Consensus 327 ~l~v~~ 332 (353)
T 3vgz_A 327 TLYVSV 332 (353)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777765
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1e-21 Score=205.90 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=195.2
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC----
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET---- 246 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---- 246 (546)
..|.+++|+|++ .++++. ++.|++||+.+++..... .+...+.+++|+|+ +++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd~-~~~~~~--~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd-G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGRG-LVVLFT--QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV-GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTTT-EEEEEE--TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT-SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCCC-eEEEEE--CCEEEEEECCCCceEEcc--CCcccccCCcCCCC-CCEEEEE-ECCeEEEEecCccccc
Confidence 579999999994 666654 489999999887655443 46778999999999 8888885 679999999998
Q ss_pred -CceeeeeecCCCCC-CCC----CcccceEEEEecCCCCEEEEEe---------------------------------CC
Q 009022 247 -GLALSLMNVNPNGW-HGP----RTWRMLYGMDINPEKGVVLVAD---------------------------------NF 287 (546)
Q Consensus 247 -~~~~~~~~~~~~~~-~~~----~~~~~v~~~~~~~~~~~l~~~~---------------------------------~d 287 (546)
++............ .+. .....+.++.|+|+|++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 76654332221100 000 0001257899999999999987 44
Q ss_pred CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCCCceeeecCCCC---cE
Q 009022 288 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKR---VV 359 (546)
Q Consensus 288 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~---~v 359 (546)
..|++||+.++...... ....+...+.+++|+| +++.|++++.++ .|++||+.++.....+....+.. .+
T Consensus 235 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQ-TGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEETTTTEEEECC-CCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eEEEEEECCCCceEeec-cCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 68999999876532111 1123445789999999 999998887665 89999998752222222112222 34
Q ss_pred EEEEEeC--CCCEEEEEeCCCcEEEEECC-CCCCCCCCcceeeccCCcccCCcee-EEecCCCCCCceeEEeeeeeecCC
Q 009022 360 NSAYFSP--SGSKILTTSQDNRLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 360 ~~~~~~p--~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
.++.|+| +|++|++++.++.++||.+. ++.... .+.. +...... +.|+|+ |+.++. +
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~----~l~~----~~~~v~~~~~~spd---------g~~l~~--~ 373 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR----QVTK----GEWEVTNFAGFDPK---------GTRLYF--E 373 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE----ECCC----SSSCEEEEEEECTT---------SSEEEE--E
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE----ecCC----CCeEEEeeeEEcCC---------CCEEEE--E
Confidence 6789999 99999999999999999875 332111 0111 1111123 689998 443331 2
Q ss_pred CCcC----cceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-C----CcEEEEcCCCCC
Q 009022 436 GAAL----HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S----RSIFIWRPKEKS 494 (546)
Q Consensus 436 g~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d----g~i~vwd~~~~~ 494 (546)
+..+ ..|..|++.+++ +..+. + ...+..+ +|+|+|++|+.+. + +.|++|++.+++
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~-~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRT-QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEE-EECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEE-EECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2333 367777877765 33332 2 2456666 8999999888754 3 569999998876
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.1e-21 Score=182.27 Aligned_cols=256 Identities=13% Similarity=0.188 Sum_probs=175.1
Q ss_pred EEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC-CceeeeeecCCCCCCCCCcc
Q 009022 188 SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTW 266 (546)
Q Consensus 188 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 266 (546)
+++.++.|++||+.+++..... .|...|.+++|+|+ +++|++++ ++.|++||+.+ ++.......+..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-------- 84 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-------- 84 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC--------
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEecccccc--------
Confidence 4567899999999987766443 48899999999999 88998887 78999999998 776654433211
Q ss_pred cceEEEEecCCCCEEEEEeC--C--CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE-EEeCCCeEEEEEC
Q 009022 267 RMLYGMDINPEKGVVLVADN--F--GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDHFARIWDI 341 (546)
Q Consensus 267 ~~v~~~~~~~~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~dg~i~iwd~ 341 (546)
..+.+++|+|++++|++++. + ..|+.|++.++.. ..... ...+..++|+| ++..|+ +++.++.++||++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP----RLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC----EECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce----EEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence 24788999999999999983 3 4555555554431 12222 22588999999 888776 7778999999986
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCC-CCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
.... ........+...+.+++|+|++++|++++ .++.+++|++.. +... ..... .......+.|+|+
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~------~~~~~--~~~~~~~~~~s~d-- 227 (297)
T 2ojh_A 159 DIDS-GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV------ERITD--SAYGDWFPHPSPS-- 227 (297)
T ss_dssp ETTT-CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE------EECCC--CSEEEEEEEECTT--
T ss_pred ECCC-CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc------EEEec--CCcccCCeEECCC--
Confidence 4322 22333336778899999999999888766 589999998862 2211 00100 1112346889998
Q ss_pred CCceeEEeeeeeecCC-CC-------cCcceEEEECCchhhhH--hhcCCCCCcccceeeecCCCcEEEEec
Q 009022 420 SESLAVIGRYISENYN-GA-------ALHPIDFIDITTGQLVA--EVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~-g~-------~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
|++++.... +. ..+.|.+||+.+++... .+.++. ..+..+ +|+|+|++|++++
T Consensus 228 -------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~-~~spdg~~l~~~~ 290 (297)
T 2ojh_A 228 -------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ-GTMNSP-NWSPDGDEFAYVR 290 (297)
T ss_dssp -------SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST-TTSCSC-CBCTTSSEEEEEE
T ss_pred -------CCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC-cccccc-eECCCCCEEEEEE
Confidence 444441100 00 23679999998886533 222433 566667 8999999999877
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=3.8e-22 Score=209.86 Aligned_cols=291 Identities=8% Similarity=0.063 Sum_probs=192.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCC---ceEEEEEecCCCCEEEEEeCC---------CeE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASSD---------GTV 239 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d---------g~i 239 (546)
.+.+++|+|+| +++++ +.||+|++||+.+++....+ ..|.. .|.+++|+|+ +++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC-CCEEEEEecCccceeecceeeE
Confidence 46688999999 56666 78999999999988776665 45554 4999999999 9999998764 788
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC--------
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-------- 311 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------- 311 (546)
++||+.+++.. .+..... ....+..++|+|+|+.|++++. +.|++|++.++.... +.......
T Consensus 94 ~~~d~~~~~~~-~l~~~~~------~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~-~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 94 VLSKIPHGDPQ-SLDPPEV------SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSD 164 (723)
T ss_dssp EEEESSSCCCE-ECCCTTC------CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE-EECCCBTTTEEEEECC
T ss_pred EEEECCCCceE-eccCCcc------ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE-EecCCCCCceECcccc
Confidence 99999988762 2221111 1113678899999999999887 799999998865432 11111110
Q ss_pred --------CcEEEEEECCCCCCEEEEEeCCC----------------------------------eEEEEECCCCCCCce
Q 009022 312 --------SKVVGLHCNPIQPELLLSCGNDH----------------------------------FARIWDIRRLEAGSS 349 (546)
Q Consensus 312 --------~~i~~~~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~ 349 (546)
..+.+++|+| +++.|++++.++ .|++||+.+......
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE
Confidence 1237899999 999999887543 799999976553222
Q ss_pred eeec----CCCCcEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCCCCCCCcceeeccCCcccCC--ceeEEecCCCC
Q 009022 350 LCDL----PHKRVVNSAYFSPSGSKILTTSQ----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAEWDPKDP 419 (546)
Q Consensus 350 ~~~~----~~~~~v~~~~~~p~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~ 419 (546)
+... .+...+.+++|+|+|++|++.+. +..|++||+.++++.. +.... ...... ...+.|+|+
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~----~~~~~-~~~~~~~~~~~~~~spd-- 316 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK----KHEDE-SEAWLHRQNEEPVFSKD-- 316 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE----EEEEE-CSSCCCCCCCCCEECTT--
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE----EEEec-cCCEEeccCCCceEcCC--
Confidence 2210 13567899999999998877653 3579999998876421 11110 011111 125789998
Q ss_pred CCceeEEeeeeeecCCCCcCc------ceEEEE-CCchh--hhHhhcCCCCCcccceeeecCCCcEEEEec--C--CcEE
Q 009022 420 SESLAVIGRYISENYNGAALH------PIDFID-ITTGQ--LVAEVMDPNITTISPVNKLHPRDDVLASGS--S--RSIF 486 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~------~i~iwd-~~~~~--~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--d--g~i~ 486 (546)
|+.++.. ++..++ .|.+|| ..++. +...+..++ ..+..+.+|+|+|++|+..+ + +.++
T Consensus 317 -------g~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 317 -------GRKFFFI-RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp -------SCSEEEE-EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred -------CCeEEEE-EecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 4433311 022233 577788 34444 144554333 33333338999999997654 4 8899
Q ss_pred EEcCCC
Q 009022 487 IWRPKE 492 (546)
Q Consensus 487 vwd~~~ 492 (546)
||++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999864
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.1e-20 Score=176.93 Aligned_cols=262 Identities=8% Similarity=0.059 Sum_probs=176.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce-eEEecccCCCceEEEEEecCCCCEEEEEeCCC---eE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG---TV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i 239 (546)
..+..+...+ +++|+|+|..+++++..++.|.+||+.++.. ...+ ..+..+..+++|+|+ +++|+++..++ .|
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPD-DQFAVTVTGLNHPFNM 110 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTT-SSEEEECCCSSSSCEE
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCC-CCEEEEecCCCCcccE
Confidence 3344455566 9999999954555666689999999998876 4444 456666655999999 88888555543 89
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCc-EEEEeCCCCCCCcce-EEeecCCCcEEE
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGF-LYLVDARTNSRSGEA-ILIHRKGSKVVG 316 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~~~~-~~~~~~~~~i~~ 316 (546)
.+||+.+++.+..+.... .+.+++|+|++++++++ ..++. |.+|++......... .........+..
T Consensus 111 ~v~d~~~~~~~~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (331)
T 3u4y_A 111 QSYSFLKNKFISTIPIPY----------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN 180 (331)
T ss_dssp EEEETTTTEEEEEEECCT----------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred EEEECCCCCeEEEEECCC----------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence 999999998877765432 36899999999866655 55588 999998864332111 111233446899
Q ss_pred EEECCCCCCEEE-EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCCCCCC
Q 009022 317 LHCNPIQPELLL-SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 317 ~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~~~~~ 394 (546)
++|+| ++++++ ++..++.|++||+.+.+....+..+.....+..++|+|+|++|++++ .++.|.+||+.++++...
T Consensus 181 ~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~- 258 (331)
T 3u4y_A 181 ITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV- 258 (331)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE-
T ss_pred eEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee-
Confidence 99999 888554 45568999999998655422244444556778999999999776654 578899999988765110
Q ss_pred cceeeccCC-cc-cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 395 REIVHSHDF-NR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 395 ~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
......... .. ......++|+|+ |+++.. ++..++.|.||++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spd---------g~~l~v--~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKT---------ETKLFI--SANISRELKVFTISGKV 306 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTT---------SSEEEE--EETTTTEEEEEETTSCE
T ss_pred cccccccccCCCCcccccceEECCC---------CCEEEE--ecCCCCcEEEEEecCCc
Confidence 000000000 00 011124689998 555431 45566799999997654
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.3e-20 Score=179.47 Aligned_cols=279 Identities=9% Similarity=0.078 Sum_probs=176.1
Q ss_pred CCcEEEEeCCC--CceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEECCCCceeeeee--cCCCCCCCCC
Q 009022 192 KGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMN--VNPNGWHGPR 264 (546)
Q Consensus 192 d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~ 264 (546)
++.|.+|.+.. +.........+...+..++|+|+ ++ |++++. ++.|.+|++.++....... .+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd-g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~------ 86 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK-DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT------ 86 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT-CE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC-Ce-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC------
Confidence 55677877654 44333222345677888999999 76 554443 6899999998776432221 1111
Q ss_pred cccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeec---------CCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 265 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR---------KGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.+..++|+|++++|++++ .++.|.+|++.............. ....+.+++|+| +++++++...++
T Consensus 87 ---~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~ 162 (347)
T 3hfq_A 87 ---PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSD 162 (347)
T ss_dssp ---CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTT
T ss_pred ---CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCC
Confidence 367899999999888887 778999999964322222211111 112488999999 888777777789
Q ss_pred eEEEEECCCCCCCceee--ecCCCCcEEEEEEeCCCCEEEE-EeCCCcEEEEECCC--CCCCCCCccee-eccCCcccCC
Q 009022 335 FARIWDIRRLEAGSSLC--DLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHLT 408 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s-~s~dg~i~vwd~~~--~~~~~~~~~~~-~~~~~~~~~~ 408 (546)
.|++|++........+. .......+..++|+|+|++|++ +..++.|.+|++.. +++.. ..... ....+.....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHNG 241 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCCE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-eeeeeecCCCCCCCCc
Confidence 99999997322111111 1123346788999999996665 55688999999874 33210 00000 0011111223
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch---hhhHhhcCCCCCcccceeeecCCCcEEEEec--CC
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG---QLVAEVMDPNITTISPVNKLHPRDDVLASGS--SR 483 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--dg 483 (546)
+..++|+|+ |+++.. +...++.|.+|++... +.+..+..+. .....+ +|+|+|++|++++ ++
T Consensus 242 ~~~i~~spd---------G~~l~v--~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~-~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 242 AAAIRLSHD---------GHFLYV--SNRGYNTLAVFAVTADGHLTLIQQISTEG-DFPRDF-DLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp EEEEEECTT---------SCEEEE--EEETTTEEEEEEECGGGCEEEEEEEECSS-SCCCEE-EECTTSSEEEEEETTTT
T ss_pred ceeEEECCC---------CCEEEE--EeCCCCEEEEEEECCCCcEEEeEEEecCC-CCcCeE-EECCCCCEEEEEEcCCC
Confidence 456889998 665431 3455788999999732 3333443332 345566 8999999888876 59
Q ss_pred cEEEE--cCCCCCcc
Q 009022 484 SIFIW--RPKEKSEL 496 (546)
Q Consensus 484 ~i~vw--d~~~~~~~ 496 (546)
.|.+| |..+|+..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 66667654
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=4.5e-21 Score=182.88 Aligned_cols=283 Identities=12% Similarity=0.042 Sum_probs=190.4
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEE-EEEeCCCeEEEEECCCCceeeee
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLM 253 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~ 253 (546)
.+++++++ +++++++.++.|++||+.+++....+.......+..++|+|+ ++++ +++..++.|.+||+.+++....+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45677777 789999999999999999887776664333235789999999 6655 55567899999999999887766
Q ss_pred ecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC------------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 254 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
...... ......+..++|+|++++|++++.+ +.|.+||+.+++........ .+...+.+++|+|
T Consensus 82 ~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVP---GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp ESCCST---TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT
T ss_pred Eccccc---ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC
Confidence 543210 0001136789999999999998865 89999999875433322222 2233688999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCC-----------------------cEEEEEEeCCCC---------
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR-----------------------VVNSAYFSPSGS--------- 369 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------------~v~~~~~~p~~~--------- 369 (546)
++. +++++ +.|++||+.+.+....+.. +... ....+++++++.
T Consensus 158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp -TSC-EEEES--SSEEEECTTTCCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred -CCc-EEEcc--CcEEEEeCCCCceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 888 55554 3499999976543222211 1100 344566665432
Q ss_pred --EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecC-CCCCCceeEEeeeeeecCCCCcCcceEEEE
Q 009022 370 --KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYISENYNGAALHPIDFID 446 (546)
Q Consensus 370 --~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd 446 (546)
++......+.+++|++.. ....+..++|+| + |+++. .+ ++.|.+||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~sp~d---------g~~l~---~~--~~~v~~~d 281 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFAD-----------------LTELYFTGLRSPKD---------PNQIY---GV--LNRLAKYD 281 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEE-----------------CSSCEEEEEECSSC---------TTEEE---EE--ESEEEEEE
T ss_pred eeEEEEeccCCcEEeccccc-----------------CCCcceeeEecCCC---------CCEEE---EE--cCeEEEEE
Confidence 122233345555555421 112235778888 6 55544 22 68899999
Q ss_pred CCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeecc
Q 009022 447 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
+.+++.+..+..+. .+..+ +|+|+|++|++++ ++.|.+||+.+++.+..+..+
T Consensus 282 ~~~~~~~~~~~~~~--~~~~~-~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 282 LKQRKLIKAANLDH--TYYCV-AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TTTTEEEEEEECSS--CCCEE-EECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CccCeEEEEEcCCC--Cccce-EECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99998877765432 34566 8999999888888 999999999999988887665
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=6.9e-21 Score=207.63 Aligned_cols=300 Identities=12% Similarity=0.092 Sum_probs=209.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCC------CcEEEEeCCCCceeEEecccCCCce-------EEEEEecCCCCEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIV-------NNIRFNPTNDGTV 230 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l 230 (546)
..+.+|...|.+++|||+| ++||+++.+ ..|++|++.++.. ..+ ..|...+ ..++|+|+ ++++
T Consensus 46 ~~lt~~~~~v~~~~~SPDG-~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~l-t~~~~~~~~~~~~~~~~~~SpD-g~ll 121 (1045)
T 1k32_A 46 RKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENGEI-KRI-TYFSGKSTGRRMFTDVAGFDPD-GNLI 121 (1045)
T ss_dssp EEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTTEE-EEC-CCCCEEEETTEECSEEEEECTT-CCEE
T ss_pred EEeeeCCCcccCeEECCCC-CEEEEEEeeccCCCCCeEEEEECCCCCe-EEc-ccCCCcccccccccccccCCCC-CEEE
Confidence 5677899999999999999 677776533 4799999987763 333 5688888 99999999 7777
Q ss_pred EEEeCC------CeEEEEECCCCceeeeeecC------------------------------------------------
Q 009022 231 YAASSD------GTVSCTDLETGLALSLMNVN------------------------------------------------ 256 (546)
Q Consensus 231 ~s~~~d------g~i~iwd~~~~~~~~~~~~~------------------------------------------------ 256 (546)
++++.+ ..|++|++.++........+
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 777754 35888887665432111000
Q ss_pred -----------CC---------C-------------CCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcc
Q 009022 257 -----------PN---------G-------------WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE 303 (546)
Q Consensus 257 -----------~~---------~-------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 303 (546)
.. . .........+..++|+|+|+.|+++. ++.|++|++.....
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l--- 277 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI--- 277 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE---
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCceEe---
Confidence 00 0 00000001234568889998888874 78899998833221
Q ss_pred eEEeec-----------CCCcEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCC-cEEEEEEeCCCCE
Q 009022 304 AILIHR-----------KGSKVVGLHCN-PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKR-VVNSAYFSPSGSK 370 (546)
Q Consensus 304 ~~~~~~-----------~~~~i~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ 370 (546)
..... +...+.+++|+ | ++..|++++ ++.|++|++.... ......|.. .+..++|+ +|+.
T Consensus 278 -~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 278 -EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp -EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS-SEEE
T ss_pred -eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc-CCCe
Confidence 11111 22358899999 9 999888887 8899999986533 233335666 89999999 9999
Q ss_pred EEEEeCCCcEE-EEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc
Q 009022 371 ILTTSQDNRLR-IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 449 (546)
Q Consensus 371 l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~ 449 (546)
|++++.++.+. +|++.+++... . . ........++|+|+ |++++ .++.++.|++||+.+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~~-------l-~-~~~~~~~~~~~SpD---------G~~la---~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAEK-------F-E-ENLGNVFAMGVDRN---------GKFAV---VANDRFEIMTVDLET 409 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEEE-------C-C-CCCCSEEEEEECTT---------SSEEE---EEETTSEEEEEETTT
T ss_pred EEEEECCCceEEEEECCCCCceE-------e-c-CCccceeeeEECCC---------CCEEE---EECCCCeEEEEECCC
Confidence 99999888888 99987654311 1 1 11223457899998 77777 567788999999999
Q ss_pred hhhhHhhcCCCCCcccceeeecCCCcEEEEec-CC----------cEEEEcCCCCCccceeecc
Q 009022 450 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR----------SIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 450 ~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg----------~i~vwd~~~~~~~~~~~~~ 502 (546)
++....+.++. ..+..+ +|+|+|++|++++ ++ .|++||+.+++ +..+..+
T Consensus 410 g~~~~~~~~~~-~~v~~~-~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~ 470 (1045)
T 1k32_A 410 GKPTVIERSRE-AMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE 470 (1045)
T ss_dssp CCEEEEEECSS-SCCCCE-EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS
T ss_pred CceEEeccCCC-CCccce-EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC
Confidence 88766654554 566777 8999999999876 54 99999999876 4444433
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=2e-20 Score=177.84 Aligned_cols=251 Identities=14% Similarity=0.162 Sum_probs=164.9
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCC-CcEEEEeCC--CCcee--EEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKK-GQVGVWDFY--KVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSC 241 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d-~~i~iwd~~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~i 241 (546)
.|...+.+++|+|+| ++|++++.+ +.|++|++. ++... ..+ . ....+..++|+|+ +++|++++. ++.|.+
T Consensus 35 ~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~d-g~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAES-A-LPGSLTHISTDHQ-GQFVFVGSYNAGNVSV 110 (343)
T ss_dssp ECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEE-E-CSSCCSEEEECTT-SSEEEEEETTTTEEEE
T ss_pred ecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeecccc-c-cCCCCcEEEEcCC-CCEEEEEecCCCeEEE
Confidence 477789999999999 566666665 999999997 44432 222 2 2337899999999 777766654 889999
Q ss_pred EECCCC---ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceE--E-eecCCCcE
Q 009022 242 TDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAI--L-IHRKGSKV 314 (546)
Q Consensus 242 wd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--~-~~~~~~~i 314 (546)
|++..+ .....+.... .+.+++|+|+++++++++ .++.|.+||+.+........ . .......+
T Consensus 111 ~d~~~~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
T 1ri6_A 111 TRLEDGLPVGVVDVVEGLD----------GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 180 (343)
T ss_dssp EEEETTEEEEEEEEECCCT----------TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCE
T ss_pred EECCCCccccccccccCCC----------CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCc
Confidence 999533 3333332111 377899999999888887 88999999998722222111 1 11233478
Q ss_pred EEEEECCCCCCEEEEE-eCCCeEEEEECCCCCC-Cc---eeeecC----CCCcEEEEEEeCCCCEEEEE-eCCCcEEEEE
Q 009022 315 VGLHCNPIQPELLLSC-GNDHFARIWDIRRLEA-GS---SLCDLP----HKRVVNSAYFSPSGSKILTT-SQDNRLRIWD 384 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~-~~---~~~~~~----~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd 384 (546)
..++|+| ++.+|+++ ..++.|.+|++..... .. .+.... ....+..++|+|++++|+++ ..++.|.+|+
T Consensus 181 ~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 181 RHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 8999999 88866554 4789999999953211 11 111111 13467789999999887754 4789999999
Q ss_pred CCC--CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE--ECCchh
Q 009022 385 SIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQ 451 (546)
Q Consensus 385 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw--d~~~~~ 451 (546)
+.. +.. ...... .....+..++|+|+ |+++.. ++..++.|.+| |..+++
T Consensus 260 ~~~~~~~~-----~~~~~~--~~~~~~~~~~~s~d---------g~~l~~--~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 260 VSEDGSVL-----SKEGFQ--PTETQPRGFNVDHS---------GKYLIA--AGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp ECTTSCCE-----EEEEEE--ECSSSCCCEEECTT---------SSEEEE--ECTTTCEEEEEEEETTTTE
T ss_pred EcCCCCce-----EEeeee--cCCCccceEEECCC---------CCEEEE--ecCCCCeEEEEEEcCCCce
Confidence 973 221 111111 11112457889998 554441 34467999999 444553
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=5.4e-21 Score=200.43 Aligned_cols=284 Identities=11% Similarity=0.097 Sum_probs=184.7
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce--eEEeccc---------------CCCceEEEEEecCCCCEEEEEeC
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNI---------------HSCIVNNIRFNPTNDGTVYAASS 235 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~---------------~~~~v~~~~~~~~~~~~l~s~~~ 235 (546)
+..+.|. |+. +++++.++ | +||+.+++. ...+... +...|.+++|+|+ +.++++ .
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~ 99 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--T 99 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--E
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--E
Confidence 4557788 534 55666677 8 999998876 3333211 0156999999998 555554 3
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC-----CCCCcceEEeecC
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART-----NSRSGEAILIHRK 310 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~ 310 (546)
++.|++||+.+++....... .. .+.+++|+|+|+.|+++ .++.|++|++.+ +...... .....
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~-~~---------~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~-~~~~~ 167 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDT-NE---------ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT-IDGTE 167 (706)
T ss_dssp TTEEEEEETTTTEEEEEECC-TT---------CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC-SCCBT
T ss_pred CCEEEEEECCCCceEEccCC-cc---------cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec-cCCCC
Confidence 59999999998876544322 11 36778999999999995 679999999987 5432211 11111
Q ss_pred ------------CCcEEEEEECCCCCCEEEEEe---------------------------------CCCeEEEEECCCCC
Q 009022 311 ------------GSKVVGLHCNPIQPELLLSCG---------------------------------NDHFARIWDIRRLE 345 (546)
Q Consensus 311 ------------~~~i~~~~~~p~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~ 345 (546)
...+.++.|+| ++++|++++ .+..|++||+.+..
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 01147899999 999999887 44789999997654
Q ss_pred CCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCCCCCCCcceeeccCCcccC-CceeEEecC--C
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDP--K 417 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p--~ 417 (546)
.........+...+.+++|+|+|++|++++.++ .|++||+.+++... .+.. ....... ....+.|+| +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~-~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR---TLFV-ETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEE-EECSSCCCCCSCCEECTTCS
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee---EEEE-ccCCCeECccCCceeecCCC
Confidence 321111114667899999999999999988775 89999998873211 1111 0111111 113568888 6
Q ss_pred CCCCceeEEeeeeeecCCCCcCcceEEEECC-chhhhHhhcCCCCCcccceeeecCCCcEEEEec--CC----cEEEEcC
Q 009022 418 DPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS--SR----SIFIWRP 490 (546)
Q Consensus 418 ~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs--dg----~i~vwd~ 490 (546)
|++++ ++..++.++||.+. ++..+..+..+. ..+..+.+|+|+|+.|+.++ ++ .|..|++
T Consensus 323 ---------g~~l~---~~~~~g~~~l~~~~~~~~~~~~l~~~~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 323 ---------NQFIW---QSRRDGWNHLYLYDTTGRLIRQVTKGE-WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp ---------SEEEE---EECTTSSCEEEEEETTSCEEEECCCSS-SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred ---------CEEEE---EEccCCccEEEEEECCCCEEEecCCCC-eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 66665 56677889999876 566666665554 44544338999998877654 44 6777787
Q ss_pred CCCC
Q 009022 491 KEKS 494 (546)
Q Consensus 491 ~~~~ 494 (546)
.+++
T Consensus 390 ~~~~ 393 (706)
T 2z3z_A 390 KGGK 393 (706)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 7765
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=1.3e-20 Score=198.68 Aligned_cols=288 Identities=11% Similarity=0.079 Sum_probs=192.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC---ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
.|.+++|+|+| ++|++++. +.|++||+.++ ... .+ ..|...+..++|+|+ +++|++++. +.|++||+.+++
T Consensus 110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPD-G~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPK-GGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTT-SSEEEEEET-TEEEEEETTTTE
T ss_pred CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCC-CCEEEEEeC-CcEEEEecCCCC
Confidence 48899999999 67777775 89999999887 433 33 457788999999999 999988874 689999999887
Q ss_pred eeeeeecCCCCC-CCCCc------ccceEEEEecCCCCEEEEEeCCC---------------------------------
Q 009022 249 ALSLMNVNPNGW-HGPRT------WRMLYGMDINPEKGVVLVADNFG--------------------------------- 288 (546)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~------~~~v~~~~~~~~~~~l~~~~~dg--------------------------------- 288 (546)
............ .+... ...+.+++|+|+|++|++++.++
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 665433221100 00000 00147799999999999987665
Q ss_pred cEEEEeCCC-CCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEECCCCCCCceeeecCCCC---cE
Q 009022 289 FLYLVDART-NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-----DHFARIWDIRRLEAGSSLCDLPHKR---VV 359 (546)
Q Consensus 289 ~i~i~d~~~-~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~---~v 359 (546)
.|++||+.+ ++... ......+...+..++| | ++++|++++. +..|++||+.++.....+.. .... .+
T Consensus 264 ~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~ 339 (741)
T 2ecf_A 264 KLGVISPAEQAQTQW-IDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLH 339 (741)
T ss_dssp EEEEECSSTTCCCEE-ECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCC
T ss_pred EEEEEECCCCCceEE-ecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcC
Confidence 789999987 65321 1111134557899999 9 9998887653 56899999987554322221 1112 45
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCC-CCCCCCCcceeeccCCcccCCceeE-EecCCCCCCceeEEeeeeeecCCCC
Q 009022 360 NSAYFSPSGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRA-EWDPKDPSESLAVIGRYISENYNGA 437 (546)
Q Consensus 360 ~~~~~~p~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~g~ 437 (546)
..++|+|+|+++++++.+|.++||.+.. +. .. .+..+ ......+ .|+|+ |+.++. ++.
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~----~l~~~----~~~v~~~~~~s~d---------g~~l~~--~~~ 399 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA----ALTHG----NWSVDELLAVDEK---------AGLAYF--RAG 399 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE----ESCCS----SSCEEEEEEEETT---------TTEEEE--EEC
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-ee----eeeec----ceEEEeEeEEeCC---------CCEEEE--EEe
Confidence 6899999999999999999888887652 21 10 11111 1112244 58998 443331 334
Q ss_pred cCc--ceEEEECCc-hhhhHhhcCCCCCcccceeeecCCCcEEEEec-C----CcEEEEcCCC
Q 009022 438 ALH--PIDFIDITT-GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S----RSIFIWRPKE 492 (546)
Q Consensus 438 ~d~--~i~iwd~~~-~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d----g~i~vwd~~~ 492 (546)
.++ .++||++.. +..+..+.. ...+..+ +|+|+|++|+... + ..+.+|+...
T Consensus 400 ~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~-~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 400 IESARESQIYAVPLQGGQPQRLSK--APGMHSA-SFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp SSCTTCBEEEEEETTCCCCEECCC--SCSEEEE-EECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCceEEEEEEEcCCCCeeeccc--CCCceEE-EECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 444 899999864 554555544 2445566 8999999988753 2 5789998754
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.4e-20 Score=203.42 Aligned_cols=288 Identities=11% Similarity=0.020 Sum_probs=205.3
Q ss_pred cCCCeEEEEEc-CCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCC-ceEEEEEecCCCCEEEEEeCCCeEE-EEECC
Q 009022 169 HSRRVTCLEFH-PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTVYAASSDGTVS-CTDLE 245 (546)
Q Consensus 169 h~~~V~~l~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~ 245 (546)
|...|.+++|+ |+| ++|++++ ++.|.+|++..+.... + ..|.. .+..++|+ + +..|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-cCCCcceEEeeeEc-C-CCeEEEEECCCceEEEEECC
Confidence 55679999999 999 6677776 7899999998766443 3 45777 89999999 7 88999988888899 99998
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
++...... .+. ..+..++|+|+|++|++++.++.|++||+.+++... ....+...+.+++|+| +++
T Consensus 368 ~~~~~~l~-~~~---------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~Sp-DG~ 433 (1045)
T 1k32_A 368 TGKAEKFE-ENL---------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISD-NSR 433 (1045)
T ss_dssp TCCEEECC-CCC---------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECT-TSC
T ss_pred CCCceEec-CCc---------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---eccCCCCCccceEECC-CCC
Confidence 77654332 221 148899999999999999999999999998865432 2234556789999999 999
Q ss_pred EEEEEeCCC----------eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 326 LLLSCGNDH----------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 326 ~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
+|++++.++ .|++||+.+.+ ......|...+.+++|+|+|++|++++.++...+|+........+..
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~ 510 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 510 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence 998887644 89999997533 23333677889999999999999999998888888865433211100
Q ss_pred ceee----c--------------------cCCcc----------c-CCceeEEecCCCCCCceeEEeeeeee--------
Q 009022 396 EIVH----S--------------------HDFNR----------H-LTPFRAEWDPKDPSESLAVIGRYISE-------- 432 (546)
Q Consensus 396 ~~~~----~--------------------~~~~~----------~-~~~~~~~~~p~~~~~~~~~~g~~~~~-------- 432 (546)
.... . ..+.+ + .....+.++|+ |.+++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d---------g~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES---------SILIYSVPVHGEFA 581 (1045)
T ss_dssp BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS---------EEEEEECCCCCSHH
T ss_pred ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCC---------CeEEEEecccCccc
Confidence 0000 0 00000 0 11123455665 554442
Q ss_pred --cCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCCC
Q 009022 433 --NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 433 --~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
..+......|.+||+.+++.. .+. ..+..+ +|||||++|++++++.|++|++.+++
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~-~l~----~~v~~~-~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVT-EVK----NNLTDL-RLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEE-EEE----EEEEEE-EECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ccccccCCCceEEEEECCCCcEE-Eee----cCcceE-EECCCCCEEEEEcCCcEEEEeCccCc
Confidence 012234567899999887643 222 345566 89999999999996699999999887
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.2e-19 Score=190.71 Aligned_cols=309 Identities=10% Similarity=0.027 Sum_probs=191.6
Q ss_pred eeccccCC---CeEEEEEcCCCCcEEEEEcCC---------CcEEEEeCCCCceeEEe-cccCCCceEEEEEecCCCCEE
Q 009022 164 AVIRYHSR---RVTCLEFHPTNNHILLSGDKK---------GQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTV 230 (546)
Q Consensus 164 ~~~~~h~~---~V~~l~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 230 (546)
..+.+|.. .|.+++|||+| ++|++++.+ +.|++||+.++...... ...|...+..++|+|+ ++.|
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd-G~~l 128 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK-GQQL 128 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS-TTCE
T ss_pred EEeccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC-CCEE
Confidence 34455554 49999999999 678887654 78899999987652221 1235556899999999 8899
Q ss_pred EEEeCCCeEEEEECCCCceeeeeecCCCCC--CCCCc-------ccceEEEEecCCCCEEEEEeCCC-------------
Q 009022 231 YAASSDGTVSCTDLETGLALSLMNVNPNGW--HGPRT-------WRMLYGMDINPEKGVVLVADNFG------------- 288 (546)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg------------- 288 (546)
++++. +.|++|++.++........+.... .+... ...+.+++|+|+|+.|++++.++
T Consensus 129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 98886 799999999887765543322110 00000 01247899999999999987543
Q ss_pred ---------------------cEEEEeCCCCCCCcceEE---eecCCCcEEEEEECCCCCCEEEEEeC----CCeEEEEE
Q 009022 289 ---------------------FLYLVDARTNSRSGEAIL---IHRKGSKVVGLHCNPIQPELLLSCGN----DHFARIWD 340 (546)
Q Consensus 289 ---------------------~i~i~d~~~~~~~~~~~~---~~~~~~~i~~~~~~p~~~~~l~~~~~----dg~i~iwd 340 (546)
.|++||+.++.....+.. ...+...+..++|+| ++++|++... +..|++||
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEe
Confidence 799999987664221110 011244789999999 8988876643 35799999
Q ss_pred CCCCCCCceeeecCCCCcE----EEEEEeCCCCEEEE--EeCCC------cEEEEE-CCCCCC--CCCCcceeeccCCcc
Q 009022 341 IRRLEAGSSLCDLPHKRVV----NSAYFSPSGSKILT--TSQDN------RLRIWD-SIFGNL--DSPSREIVHSHDFNR 405 (546)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~l~s--~s~dg------~i~vwd-~~~~~~--~~~~~~~~~~~~~~~ 405 (546)
+.+++....+. ..+...+ ..++|+|+|+.|+. +..++ .|.+|| ...+.. ... + .. +
T Consensus 287 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---l-~~----~ 357 (723)
T 1xfd_A 287 ATTGVCTKKHE-DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS---I-TS----G 357 (723)
T ss_dssp TTTCCEEEEEE-EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB---S-CC----S
T ss_pred CCCCcceEEEE-eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE---e-ec----C
Confidence 97655322221 1233443 37899999997775 44566 577777 333330 111 0 00 1
Q ss_pred cCCcee-EEecCCCCCCceeEEeeeeeecCCCCcC--cceEEEECCchh--hhHhhcCC--CCCcccceeeecCCCcEEE
Q 009022 406 HLTPFR-AEWDPKDPSESLAVIGRYISENYNGAAL--HPIDFIDITTGQ--LVAEVMDP--NITTISPVNKLHPRDDVLA 478 (546)
Q Consensus 406 ~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~~g~~d--~~i~iwd~~~~~--~~~~~~~~--~~~~i~~v~~~s~~~~~l~ 478 (546)
...... +.|+|+ |++++. ++..+ +.++||++.... ....+... +...+..+ +|+|+|++|+
T Consensus 358 ~~~~~~~~~~spd---------g~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~spdg~~l~ 425 (723)
T 1xfd_A 358 DWDVTKILAYDEK---------GNKIYF--LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA-SFSHSMDFFL 425 (723)
T ss_dssp SSCEEEEEEEETT---------TTEEEE--EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE-EECTTSSEEE
T ss_pred CeEEEeeeEEcCC---------CCEEEE--EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEE-EECCCCCEEE
Confidence 111122 589998 555541 23333 789999986432 23334321 22445566 8999999888
Q ss_pred Eec--CC--cEEEEcCCCCCccc
Q 009022 479 SGS--SR--SIFIWRPKEKSELV 497 (546)
Q Consensus 479 sgs--dg--~i~vwd~~~~~~~~ 497 (546)
... .+ ...+++..++..+.
T Consensus 426 ~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 426 LKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp EECCSSSSCCEEEEETTTCCEEE
T ss_pred EEccCCCCCeEEEEECCCCCEEE
Confidence 743 22 34455655554433
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=4.7e-20 Score=174.81 Aligned_cols=246 Identities=11% Similarity=-0.036 Sum_probs=175.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC----CCceEEEEEecCCCCEEEEEe------------C
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH----SCIVNNIRFNPTNDGTVYAAS------------S 235 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~------------~ 235 (546)
.+.+++|+|+|..+++++..++.|.+||+.+++....+...+ ...+..++|+|+ +++|+++. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCC-CCEEEEEeccccccccccccc
Confidence 478899999996566777788999999999887766554332 226788999999 88888875 5
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
++.|.+||+.+++.+..+.... .+.+++|+|++++|+++ ++.|++||+.+++..... .......
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~-~~~~~~~--- 177 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPR----------QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK-PIQSWEA--- 177 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCS----------SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE-CSTTTTT---
T ss_pred CceEEEEECCCCcEEEEEeCCC----------CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee-eccccCC---
Confidence 7999999999988877665422 36778899999988888 689999999886543211 1111111
Q ss_pred EEEECCCCCCEEEEEeC-CC-----------------------eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEE
Q 009022 316 GLHCNPIQPELLLSCGN-DH-----------------------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~-dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 371 (546)
.+.|+| ++..++..+. ++ .|.+||+.+.+.. .+....+...+.+++|+|++++|
T Consensus 178 ~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 178 ETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEE
T ss_pred CceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEE
Confidence 236788 6665544332 22 4789999875543 23223566678899999999999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
+++ ++.|.+||+.+++... ... ....+..++|+|+ |+++. .++.++.|.+||+.+++
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~-------~~~--~~~~~~~~~~s~d---------g~~l~---~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIK-------RVP--LPHSYYSVNVSTD---------GSTVW---LGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEE-------EEE--CSSCCCEEEECTT---------SCEEE---EESBSSEEEEEETTTCC
T ss_pred EEe--CCeEEEEECCCCcCcc-------eec--CCCceeeEEECCC---------CCEEE---EEcCCCcEEEEECcCCc
Confidence 988 7899999998765421 111 1123457889998 66555 34568999999999998
Q ss_pred hhHhhcCC
Q 009022 452 LVAEVMDP 459 (546)
Q Consensus 452 ~~~~~~~~ 459 (546)
.+..+..+
T Consensus 313 ~~~~~~~~ 320 (337)
T 1pby_B 313 KKGQVDLP 320 (337)
T ss_dssp EEEEEECG
T ss_pred EEEEEEcC
Confidence 87776544
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7.4e-19 Score=168.37 Aligned_cols=284 Identities=11% Similarity=0.066 Sum_probs=180.4
Q ss_pred cEEEEEc----CCCcEEEEeCC--CCceeEEecccCCCceEEEEEecCCCCEEEEEeCC----CeEEEEECCC--Cceee
Q 009022 184 HILLSGD----KKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTVSCTDLET--GLALS 251 (546)
Q Consensus 184 ~~l~s~~----~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~--~~~~~ 251 (546)
.+++.|+ .++.|.+|.+. ++........ +...+..++|+|+ +++|++++.+ +.|.+|++.. +....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 4555663 45689999774 4443333322 6777889999999 8888888875 7999998875 44332
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEe--e-c--------CCCcEEEEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILI--H-R--------KGSKVVGLHC 319 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~-~--------~~~~i~~~~~ 319 (546)
........ .....+++ ++++|++++ .++.|.+|++............ + . ....+.+++|
T Consensus 92 ~~~~~~~~-------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 92 LNTQKTMG-------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp EEEEECSS-------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred eeEeccCC-------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 22221110 13566777 788777766 6789999999764433222111 1 1 1224588999
Q ss_pred CCCCCCEEEEEe-CCCeEEEEECCCCCC------Cc-----eeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECC
Q 009022 320 NPIQPELLLSCG-NDHFARIWDIRRLEA------GS-----SLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSI 386 (546)
Q Consensus 320 ~p~~~~~l~~~~-~dg~i~iwd~~~~~~------~~-----~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~ 386 (546)
+| ++++|++++ .++.|++|++..... .. ......+...+..++|+|+|++|++++ .++.|.+|++.
T Consensus 163 sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~ 241 (361)
T 3scy_A 163 TP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA 241 (361)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE
T ss_pred CC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec
Confidence 99 888665554 588999999875332 10 122234556688999999999887777 68999999998
Q ss_pred CCCCCCCCcceeeccC-CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCc-CcceEEEECC--chh--hhHhhcCCC
Q 009022 387 FGNLDSPSREIVHSHD-FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-LHPIDFIDIT--TGQ--LVAEVMDPN 460 (546)
Q Consensus 387 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~-d~~i~iwd~~--~~~--~~~~~~~~~ 460 (546)
++.+.. +..... ......+..++|+|+ |+++.. +... ++.|.+|++. +++ .+..+..
T Consensus 242 ~g~~~~----~~~~~~~~~~~~~~~~i~~spd---------g~~l~v--~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-- 304 (361)
T 3scy_A 242 DGMLDE----IQTVAADTVNAQGSGDIHLSPD---------GKYLYA--SNRLKADGVAIFKVDETNGTLTKVGYQLT-- 304 (361)
T ss_dssp TTEEEE----EEEEESCSSCCCCEEEEEECTT---------SSEEEE--EECSSSCEEEEEEECTTTCCEEEEEEEEC--
T ss_pred CCceEE----eEEEecCCCCCCCcccEEECCC---------CCEEEE--ECCCCCCEEEEEEEcCCCCcEEEeeEecC--
Confidence 664311 110101 111122357889998 665531 2333 5889999985 444 3333333
Q ss_pred CCcccceeeecCCCcEEEEec--CCcEEEE--cCCCCCccc
Q 009022 461 ITTISPVNKLHPRDDVLASGS--SRSIFIW--RPKEKSELV 497 (546)
Q Consensus 461 ~~~i~~v~~~s~~~~~l~sgs--dg~i~vw--d~~~~~~~~ 497 (546)
......+ +|+|+|++|++++ ++.|.+| |..+|+...
T Consensus 305 g~~~~~~-~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 305 GIHPRNF-IITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp SSCCCEE-EECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCceE-EECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 2345566 8999999888876 6999996 555676543
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=6.6e-19 Score=168.11 Aligned_cols=258 Identities=13% Similarity=0.129 Sum_probs=184.0
Q ss_pred CCCceEEEEEecCCCCEEEEEeC-------CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASS-------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA- 284 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 284 (546)
....+..++|+|+ ++++++++. ++.|.+||+.+++.+..+.... .+..++|+|++++++++
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----------KPFGATINNTTQTLWFGN 107 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----------CCCSEEEETTTTEEEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----------CcceEEECCCCCEEEEEe
Confidence 4456789999999 777777764 5689999999999888776532 25678999999966555
Q ss_pred eCCCcEEEEeCCCCCCCcceEEeecCC-------CcEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCCCceeeecC-
Q 009022 285 DNFGFLYLVDARTNSRSGEAILIHRKG-------SKVVGLHCNPIQPELLLSCG--NDHFARIWDIRRLEAGSSLCDLP- 354 (546)
Q Consensus 285 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~- 354 (546)
..++.|.+||+.+++..... ...... ..+.+++|+| +++++++++ .++.|.+||+.+.+. +..+.
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~---~~~~~~ 182 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL---KTAIQN 182 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE---EEEECC
T ss_pred cCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce---EEEecC
Confidence 55799999999987654322 221111 1278899999 888776665 478999999976443 33333
Q ss_pred CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecC
Q 009022 355 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY 434 (546)
Q Consensus 355 ~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 434 (546)
+...+.+++|+|++++|++++.++.|.+||+.+++.... ...........+..++|+|+ |+++..
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~s~d---------g~~l~~-- 247 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR----KKLLDDGKEHFFINISLDTA---------RQRAFI-- 247 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE----EECCCSSSCCCEEEEEEETT---------TTEEEE--
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE----EEcCCCCCCcccceEEECCC---------CCEEEE--
Confidence 455588899999999999999999999999988764221 11111111222346889998 443321
Q ss_pred CCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE-ec-CCcEEEEcCCCCCccceeeccceE
Q 009022 435 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS-GS-SRSIFIWRPKEKSELVEQKEEMKI 505 (546)
Q Consensus 435 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s-gs-dg~i~vwd~~~~~~~~~~~~~~~~ 505 (546)
+...++.|.+||+.+++.+..+..+.. ..+ +|+|+|++|+. .. ++.|.+||+.+++.+..+..+..+
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~-~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 316 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPES---LAV-LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP 316 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC---CCE-EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEE
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCC---ceE-EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCC
Confidence 334568999999999988777765432 345 89999996555 44 899999999999988887765543
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.1e-19 Score=185.97 Aligned_cols=270 Identities=13% Similarity=0.013 Sum_probs=182.3
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC---CCeEEEEEC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDL 244 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~ 244 (546)
+..+|++++|+||| +.||+++. ||+++||++.++.. ..+...+...+..++|+|+ +++++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 35689999999999 67777766 99999999865544 3342333368999999987 56776664 454556554
Q ss_pred CC---CceeeeeecCCCCCCCCCcccceEEEEecCCCCE-EEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 245 ET---GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
.. +... .+.... .+...+|+|+++. +++....+.+.+||+.+++.. ....+.. .+++|+
T Consensus 96 ~~~~~g~~~-~l~~~~----------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~~~--~~~~~s 158 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVK----------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARLPG--FGFVSD 158 (582)
T ss_dssp ETTSTTCCE-ECTTSC----------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEESS--CEEEEE
T ss_pred eccCCCccc-cccCCC----------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecCCC--ceEEEC
Confidence 33 2222 221111 1345678888753 344445556669999876432 2222221 789999
Q ss_pred CCCCCEEEEEeCC----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCCCCCCC
Q 009022 321 PIQPELLLSCGND----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--RLRIWDSIFGNLDSPS 394 (546)
Q Consensus 321 p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg--~i~vwd~~~~~~~~~~ 394 (546)
| ++++|++++.+ +.|++||+.+++. .....|...+..++|+|+|++|+++..++ .|++||+.+++..
T Consensus 159 p-DG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--- 231 (582)
T 3o4h_A 159 I-RGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--- 231 (582)
T ss_dssp E-ETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---
T ss_pred C-CCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---
Confidence 9 99999988776 7899999976543 22346788899999999999999888888 8999999887642
Q ss_pred cceeeccCCcccCCceeEE--------ecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccc
Q 009022 395 REIVHSHDFNRHLTPFRAE--------WDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISP 466 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 466 (546)
....+ .. ....+. |+|+ |.+++ +++.++.++||++ |+.+.. . ...+..
T Consensus 232 --~~~~~--~~--~~~~~~~~~~~~~~~spd---------g~~~~---~~~~~g~~~l~~~--g~~~~~---~-~~~v~~ 287 (582)
T 3o4h_A 232 --DLELP--SK--DFSSYRPTAITWLGYLPD---------GRLAV---VARREGRSAVFID--GERVEA---P-QGNHGR 287 (582)
T ss_dssp --ECCCS--CS--HHHHHCCSEEEEEEECTT---------SCEEE---EEEETTEEEEEET--TEEECC---C-SSEEEE
T ss_pred --EccCC--Cc--ChhhhhhccccceeEcCC---------CcEEE---EEEcCCcEEEEEE--CCeecc---C-CCceEE
Confidence 11111 10 111233 9998 54444 6677899999999 665442 1 245666
Q ss_pred eeeecCCCcEEEEec-C---CcEEEEcCCC
Q 009022 467 VNKLHPRDDVLASGS-S---RSIFIWRPKE 492 (546)
Q Consensus 467 v~~~s~~~~~l~sgs-d---g~i~vwd~~~ 492 (546)
+ +|+ +++++++++ + ..|.+|+...
T Consensus 288 ~-~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 288 V-VLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E-EEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred E-Eec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 6 899 999998877 5 5578888754
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=4.1e-19 Score=164.81 Aligned_cols=208 Identities=16% Similarity=0.107 Sum_probs=150.7
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC-CceeEEecccC-CCceEEEEEecCCCCEEEEEeC--CC--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASS--DG-- 237 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~--dg-- 237 (546)
..+..|...|.+++|+|+| ++|++++ ++.|++||+.+ +...... ..+ ...+.+++|+|+ +++|++++. ++
T Consensus 35 ~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPD-GALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTT-SSEEEEEECTTTSSC
T ss_pred eeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCC-CCEEEEEEeCCCCcc
Confidence 3466789999999999999 6788876 78999999998 6655544 344 478899999999 889999883 33
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
.|.+|++.++.. ..+... ..+..++|+|++++|+ ++..++.+.+|++..... .......+...+.+
T Consensus 111 ~l~~~~~~~~~~-~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 111 AIYLLPSTGGTP-RLMTKN----------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGEGRNDG 177 (297)
T ss_dssp EEEEEETTCCCC-EECCSS----------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSSSCEEE
T ss_pred eEEEEECCCCce-EEeecC----------CCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCCCcccc
Confidence 455555555542 222111 1378899999999887 677889888888643221 12233445568999
Q ss_pred EEECCCCCCEEEEEe-CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----------CcEEEEE
Q 009022 317 LHCNPIQPELLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----------NRLRIWD 384 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----------g~i~vwd 384 (546)
++|+| ++.+|++++ .++.++||++..... .......+...+.+++|+|++++|++++.+ +.|.+||
T Consensus 178 ~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 178 PDYSP-DGRWIYFNSSRTGQMQIWRVRVDGS-SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEECT-TSSEEEEEECTTSSCEEEEEETTSS-CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred ceECC-CCCEEEEEecCCCCccEEEECCCCC-CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 99999 888777665 589999998863221 122223567789999999999999988876 5699999
Q ss_pred CCCCCC
Q 009022 385 SIFGNL 390 (546)
Q Consensus 385 ~~~~~~ 390 (546)
+.+++.
T Consensus 256 ~~~~~~ 261 (297)
T 2ojh_A 256 MDGGNV 261 (297)
T ss_dssp TTSCSC
T ss_pred cCCCCc
Confidence 987654
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=1.1e-18 Score=168.86 Aligned_cols=296 Identities=11% Similarity=0.039 Sum_probs=187.7
Q ss_pred eeeeccccCCCeEE-----EEEcCCCCcEEEEEcC-CC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEE
Q 009022 162 NCAVIRYHSRRVTC-----LEFHPTNNHILLSGDK-KG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 162 ~~~~~~~h~~~V~~-----l~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
.+..+..|...+.. .+|+|+| ++|+.++. ++ .|.+||+.+++..... ..+...+..+.|+|+ ++.|+.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd-g~~l~~~ 98 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD-DDALFYV 98 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT-SSEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC-CCEEEEE
Confidence 34566667766666 8899999 55666655 66 4888898887655544 556666667889999 9999999
Q ss_pred eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceE--EEEecCCCCEEEEE----------------------eCCCc
Q 009022 234 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY--GMDINPEKGVVLVA----------------------DNFGF 289 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~----------------------~~dg~ 289 (546)
+.++.|++||+.+++.......+.. .+. ...+++++.+++.. ..+..
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~---------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAE---------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTT---------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred eCCCeEEEEECCCCcceeeeechhh---------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9999999999999987766554322 132 23358999988753 23468
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCCCceeeecCCC--CcEEE
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHK--RVVNS 361 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~v~~ 361 (546)
|++||+.+++.. ....+...+..+.|+|.++..|+..... ..|.++|+..... ..+ ..+. ..+..
T Consensus 170 l~~~d~~~g~~~----~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~~~~ 242 (388)
T 3pe7_A 170 LMRVDLKTGEST----VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKV--KTHAEGESCTH 242 (388)
T ss_dssp EEEEETTTCCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EES--CCCCTTEEEEE
T ss_pred EEEEECCCCceE----EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEe--eeCCCCccccc
Confidence 999999886532 2223344689999999556667665543 3788888754322 122 2233 35788
Q ss_pred EEEeCCCCEEEEEeC-CC----cEEEEECCCCCCCCCCcceeeccCCccc-CCceeEEecCCCCCCceeEEeeeeeecC-
Q 009022 362 AYFSPSGSKILTTSQ-DN----RLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENY- 434 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~g~~~~~~~- 434 (546)
+.|+|+|+.|+..+. ++ .|++||+.+++... +......... ..+-...|+|+ |+.++...
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~~~~~~~~~~~~~~~spd---------g~~l~~~~~ 309 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ----LTSMPACSHLMSNYDGSLMVGD---------GSDAPVDVQ 309 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE----EEEECCEEEEEECTTSSEEEEE---------ECCC-----
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE----EEcCCCceeeeecCCCCeEccC---------CCcceeEee
Confidence 999999997765543 22 39999998876311 1110000000 00011245555 66665321
Q ss_pred -----CCCcCcceEEEECCchhhhHhhcCCCCC----------cccceeeecCCCcEEEEec--CCcEEEEcCC
Q 009022 435 -----NGAALHPIDFIDITTGQLVAEVMDPNIT----------TISPVNKLHPRDDVLASGS--SRSIFIWRPK 491 (546)
Q Consensus 435 -----~g~~d~~i~iwd~~~~~~~~~~~~~~~~----------~i~~v~~~s~~~~~l~sgs--dg~i~vwd~~ 491 (546)
++..+..|++||+.+++.. .+..+... .+..+ +|+|+|+.|+.++ +|...||.+.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHP-SFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCc-cCCCCCCEEEEEecCCCceeEEEEE
Confidence 1255678999999887653 33333210 34555 8999999888765 6777777654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=2.2e-18 Score=164.14 Aligned_cols=268 Identities=11% Similarity=0.129 Sum_probs=166.2
Q ss_pred cccCCCeEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCceeEEe-cccCCCceEEEEEecCCCCEEEEEe-CCCeEEEE
Q 009022 167 RYHSRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCT 242 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iw 242 (546)
..+...+..++|+|+| ++++++. .++.|++|++.++...... ...+...+..++|+|+ +++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEE
Confidence 3456778899999999 5555543 2689999999765532221 1346778899999999 88888777 68999999
Q ss_pred ECC-CCce--eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-ecCCCcEEEEE
Q 009022 243 DLE-TGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLH 318 (546)
Q Consensus 243 d~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~ 318 (546)
++. .+.. +..+...............+.+++|+|+++++++...++.|.+|++............ ......+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 996 3332 2222211110000011124788999999996666667889999999832222111111 12233678899
Q ss_pred ECCCCCCEEEE-EeCCCeEEEEECCCCCC-Cceeeec-CC------CCcEEEEEEeCCCCEEE-EEeCCCcEEEEECCCC
Q 009022 319 CNPIQPELLLS-CGNDHFARIWDIRRLEA-GSSLCDL-PH------KRVVNSAYFSPSGSKIL-TTSQDNRLRIWDSIFG 388 (546)
Q Consensus 319 ~~p~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~-~~------~~~v~~~~~~p~~~~l~-s~s~dg~i~vwd~~~~ 388 (546)
|+| ++++|++ +..++.|.+|++..... ...+... .. ...+..++|+|+|++|+ ++..++.|.+|++...
T Consensus 194 ~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 194 FSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999 8885555 56788999999864111 1111111 11 14588999999999874 5556899999998632
Q ss_pred CCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE--ECCchhhh
Q 009022 389 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQLV 453 (546)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw--d~~~~~~~ 453 (546)
... . ....... ....+..++|+|+ |++++. ++..++.|.+| |..+|++.
T Consensus 273 g~~---~-~~~~~~~-~~~~~~~~~~spd---------g~~l~v--~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHL---T-LIQQIST-EGDFPRDFDLDPT---------EAFVVV--VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCE---E-EEEEEEC-SSSCCCEEEECTT---------SSEEEE--EETTTTEEEEEEECTTTCCEE
T ss_pred CcE---E-EeEEEec-CCCCcCeEEECCC---------CCEEEE--EEcCCCcEEEEEEeCCCCeEE
Confidence 110 1 1111111 1122457889998 665541 23445889999 55556543
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=3.5e-19 Score=173.92 Aligned_cols=205 Identities=10% Similarity=0.052 Sum_probs=146.8
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc----------eeEE----ecccCCCceEEEEEecCCCCEEE----E
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----------EKIV----YGNIHSCIVNNIRFNPTNDGTVY----A 232 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------~~~~----~~~~~~~~v~~~~~~~~~~~~l~----s 232 (546)
..++.|++++++ .+|++++.++ ++||+..... .... ....+...|.+++|+|+ +++|+ +
T Consensus 37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEE
T ss_pred CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEec
Confidence 357899999998 6888888887 9998753210 0010 01235678999999999 88888 7
Q ss_pred EeCCCeEEEEECCCC--------ceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcc
Q 009022 233 ASSDGTVSCTDLETG--------LALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGE 303 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~ 303 (546)
++.|+.|++||+.++ +.+..+... ..+...|.+++|+|+ +.+|++++.||.|++||++++..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~--- 184 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL------KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK--- 184 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC------CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeecc------CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---
Confidence 888999999998764 111111110 112236999999998 88999999999999999998632
Q ss_pred eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-----CCCCcEEEEEEeCCCCEEEEEe-CC
Q 009022 304 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-----PHKRVVNSAYFSPSGSKILTTS-QD 377 (546)
Q Consensus 304 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~s-~d 377 (546)
......|...|.+++|+| ++.+|++|+.||.|++||++ ......+... .|...|.+++|++++.++++.+ .+
T Consensus 185 ~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 223344556899999999 89999999999999999997 2221122111 1334899999999888775543 34
Q ss_pred C------cEEEEECCCCC
Q 009022 378 N------RLRIWDSIFGN 389 (546)
Q Consensus 378 g------~i~vwd~~~~~ 389 (546)
| .+++|++....
T Consensus 263 g~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CCSSSCCEEEEEECCCTT
T ss_pred CccCCCCceEEEEeccCC
Confidence 3 38999998653
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.3e-19 Score=185.60 Aligned_cols=285 Identities=12% Similarity=0.033 Sum_probs=184.7
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCC---ceEEEEEecCCCCEEEEEeC---------CCeEEEE
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---IVNNIRFNPTNDGTVYAASS---------DGTVSCT 242 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~---------dg~i~iw 242 (546)
+++|+|+| ++++++ .|++|++||+.+++....+ ..|.. .+.+++|+|+ +++|++++. ++.|++|
T Consensus 20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEE
Confidence 67899999 666655 5899999999998876655 34433 4899999999 999988876 6899999
Q ss_pred ECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE--------
Q 009022 243 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV-------- 314 (546)
Q Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i-------- 314 (546)
|+.+++.+...... ..+..++|+|+|+.|+++. ++.|++|++.++..... ....+...+
T Consensus 96 d~~~g~~~~~~~l~----------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 96 DLSNGEFVRGNELP----------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWV 162 (719)
T ss_dssp ETTTTEECCSSCCC----------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHH
T ss_pred ECCCCccccceecC----------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccce
Confidence 99998763211111 1378899999999999986 68999999987654211 111111112
Q ss_pred ---------EEEEECCCCCCEEEEEeCCC----------------------------------eEEEEECCCCCCC--ce
Q 009022 315 ---------VGLHCNPIQPELLLSCGNDH----------------------------------FARIWDIRRLEAG--SS 349 (546)
Q Consensus 315 ---------~~~~~~p~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~ 349 (546)
.+++|+| +++.|++++.|. .|++||+.+.... ..
T Consensus 163 ~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 4899999 999999887552 7889999754321 01
Q ss_pred e---e-ecCCCCcEEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCCCCCCCcceeeccCCcccCC---ceeEEe
Q 009022 350 L---C-DLPHKRVVNSAYFSPSGSKILTTSQD----NRLRIWD----SIFGNLDSPSREIVHSHDFNRHLT---PFRAEW 414 (546)
Q Consensus 350 ~---~-~~~~~~~v~~~~~~p~~~~l~s~s~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 414 (546)
+ . ..+|...+.+++|+|+++++++.... ..|.+|| +.+++........... ...... .....|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVF 319 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEE
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc--CCceEccccCCccEE
Confidence 1 0 11577889999999998877774432 2488899 7776643211000001 111111 115689
Q ss_pred cCCCCCCceeEEeeeeeec-CCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-C-----CcEEE
Q 009022 415 DPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S-----RSIFI 487 (546)
Q Consensus 415 ~p~~~~~~~~~~g~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-d-----g~i~v 487 (546)
+|+ |+.++.. ........|.+|++.+++ ...+..+. ..+..+ .++ +++.|+..+ + +.++|
T Consensus 320 spd---------g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~-~~v~~~-~~~-d~~~i~~~~~~~~~~~~~~~l 386 (719)
T 1z68_A 320 SYD---------AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK-WEAINI-FRV-TQDSLFYSSNEFEEYPGRRNI 386 (719)
T ss_dssp CTT---------SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS-SCEEEE-EEE-CSSEEEEEESCGGGCTTCBEE
T ss_pred CCC---------CCeEEEEEEccCCceEEEEEECCCCc-eEecccCc-eEEEEE-EEE-eCCEEEEEEecCCCCCceEEE
Confidence 998 4322210 012234568888887766 33444333 445555 344 777666654 5 78899
Q ss_pred EcCCC
Q 009022 488 WRPKE 492 (546)
Q Consensus 488 wd~~~ 492 (546)
|.+..
T Consensus 387 ~~~~~ 391 (719)
T 1z68_A 387 YRISI 391 (719)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98754
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=3.4e-18 Score=163.83 Aligned_cols=285 Identities=12% Similarity=0.087 Sum_probs=175.6
Q ss_pred EEEEEcCC--CcEEEEeCC--CCceeEEec--ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC-CCceeeeeecCC
Q 009022 185 ILLSGDKK--GQVGVWDFY--KVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNP 257 (546)
Q Consensus 185 ~l~s~~~d--~~i~iwd~~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~ 257 (546)
+|+.|+.. +.|.+|++. ++....... ......+..++|+|+ +++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 35555543 468887653 443322211 123346889999999 8889888887 99999997 776654332211
Q ss_pred CCCCCCCcccceEEEEecCCCCE--EEEEe-------------CCCcEEEEeCCC-CCCCcceEEe--ecCCCcEEEEEE
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGV--VLVAD-------------NFGFLYLVDART-NSRSGEAILI--HRKGSKVVGLHC 319 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~--~~~~~~i~~~~~ 319 (546)
.. .+.+++|+|++++ ++++. .++.+.+|++.. +.... .... +.+...+.+++|
T Consensus 82 ~g--------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 82 GG--------HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp CS--------SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEE
T ss_pred CC--------CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEE
Confidence 11 1345789999995 44543 688999999974 33221 1121 123457899999
Q ss_pred CCCCCCEEEEEe-CCCeEEEEECC-CCCCCceeeec---CCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCCCC
Q 009022 320 NPIQPELLLSCG-NDHFARIWDIR-RLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSI--FGNLD 391 (546)
Q Consensus 320 ~p~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~--~~~~~ 391 (546)
+| ++++|+++. .++.|++|++. +++. ..+... .+...+..++|+|+|++|++++. ++.|.+|++. ++++.
T Consensus 153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 153 DP-TETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CC-CCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 99 898887765 46899999997 4332 112222 23567899999999999888775 6899999875 44421
Q ss_pred CCCccee-eccCCcccC-------CceeEE-ecCCCCCCceeEEeeeeeecCCCC---cCcceEEEECC-chhhhHh---
Q 009022 392 SPSREIV-HSHDFNRHL-------TPFRAE-WDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDIT-TGQLVAE--- 455 (546)
Q Consensus 392 ~~~~~~~-~~~~~~~~~-------~~~~~~-~~p~~~~~~~~~~g~~~~~~~~g~---~d~~i~iwd~~-~~~~~~~--- 455 (546)
.....+. ....+..+. .+..++ |+|+ |+++.....+. ..+.|.+|++. +|++...
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd---------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~ 301 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS---------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT---------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCC---------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence 0000000 001111111 345788 9998 55443110111 11389999986 5654321
Q ss_pred hcCCCCCcccceeeecC---CCcEEEEec-C-CcEEEEcCCCC
Q 009022 456 VMDPNITTISPVNKLHP---RDDVLASGS-S-RSIFIWRPKEK 493 (546)
Q Consensus 456 ~~~~~~~~i~~v~~~s~---~~~~l~sgs-d-g~i~vwd~~~~ 493 (546)
+..+ ......+ +|+| +|++|++++ + +.|.||++...
T Consensus 302 ~~~~-~~~~~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 302 SPTP-TSGGHSN-AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECS-SCCTTCC-CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eecC-CCCcccc-eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2222 2334556 8999 899999987 4 99999998765
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=2.1e-17 Score=158.20 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=171.5
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCC----CcEEEEeCCCC--ceeEEe-cccCCCceEEEEEecCCCCEEEEEe-CCCeEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKK----GQVGVWDFYKV--SEKIVY-GNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVS 240 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d----~~i~iwd~~~~--~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~ 240 (546)
|...+..++|+|+| ++|++++.+ +.|.+|++... ...... ...+......+++ + +++|++++ .++.|.
T Consensus 48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEECCCCEEE
Confidence 67788889999999 677777765 79999998753 322211 1234556777777 5 67666665 578999
Q ss_pred EEECCCCceeeeee----cCCC-CCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC------Ccc----e
Q 009022 241 CTDLETGLALSLMN----VNPN-GWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSR------SGE----A 304 (546)
Q Consensus 241 iwd~~~~~~~~~~~----~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~~~----~ 304 (546)
+|++.....+..+. .... ..........+.+++|+|+++++++++ .++.|.+|++..... ... .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99997544332211 1100 000001112368899999999776655 578999999876442 111 1
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCCCc--eeeec-CCCCcEEEEEEeCCCCEEEEEeCC--C
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEAGS--SLCDL-PHKRVVNSAYFSPSGSKILTTSQD--N 378 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~-~~~~~v~~~~~~p~~~~l~s~s~d--g 378 (546)
.........+..++|+| +++++++++ .++.|.+|++.+..... .+... .+...+..++|+|+|++|+++..+ +
T Consensus 204 ~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11223344678999999 898777766 68999999997432211 11111 234557899999999998776654 8
Q ss_pred cEEEEECC--CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEE--ECCchhhhH
Q 009022 379 RLRIWDSI--FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI--DITTGQLVA 454 (546)
Q Consensus 379 ~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iw--d~~~~~~~~ 454 (546)
.|.+|++. ++++. ....... ...+..++|+|+ |++++. ++..++.|.+| |..+|++..
T Consensus 283 ~i~v~~~~~~~g~~~-----~~~~~~~--g~~~~~~~~spd---------g~~l~~--~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 283 GVAIFKVDETNGTLT-----KVGYQLT--GIHPRNFIITPN---------GKYLLV--ACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEEECTTTCCEE-----EEEEEEC--SSCCCEEEECTT---------SCEEEE--EETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEEEcCCCCcEE-----EeeEecC--CCCCceEEECCC---------CCEEEE--EECCCCCEEEEEEECCCCcEee
Confidence 99999985 33321 1111111 223457899998 665551 23356889996 555666544
Q ss_pred hhcCCCCCcccceeeec
Q 009022 455 EVMDPNITTISPVNKLH 471 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s 471 (546)
.....+.....++ .|.
T Consensus 345 ~~~~~~~~~p~~v-~~~ 360 (361)
T 3scy_A 345 IKKDIKVDKPVCL-KFV 360 (361)
T ss_dssp CSCCEECSSEEEE-EEE
T ss_pred cceeeeCCCCeEE-EEc
Confidence 3322222344444 443
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1.8e-18 Score=168.95 Aligned_cols=205 Identities=11% Similarity=0.064 Sum_probs=143.3
Q ss_pred ccCCCeEEEEEcCCCCcEEE----EEcCCCcEEEEeCCCC--------cee--EEecccCCCceEEEEEecCCCCEEEEE
Q 009022 168 YHSRRVTCLEFHPTNNHILL----SGDKKGQVGVWDFYKV--------SEK--IVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~----s~~~d~~i~iwd~~~~--------~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
.|...|++++|+|+| ++|+ +|+.|+.|+|||+.+. +.. .....+|...|.+++|+|+.+.+|+++
T Consensus 90 ~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 367889999999999 5777 8899999999998654 111 233367999999999999867899999
Q ss_pred eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEee-----
Q 009022 234 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH----- 308 (546)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 308 (546)
+.||+|++||++++........+. ..+.+++|+|++++|++|+.||.|++||++ +.... .+..+
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~---------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~-~~~~~~~~~~ 237 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPST---------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK-VIPCPPFYES 237 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGG---------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE-EECCCTTCCT
T ss_pred ECCCeEEEEEcCCCcceeeccCCC---------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc-cccCCcccCC
Confidence 999999999999886554332221 259999999999999999999999999998 32211 11111
Q ss_pred cCCCcEEEEEECCCCCCEEEE-EeCCC------eEEEEECCCCCCC--ceeeec--------CCCCcEEEEEEeCCCCEE
Q 009022 309 RKGSKVVGLHCNPIQPELLLS-CGNDH------FARIWDIRRLEAG--SSLCDL--------PHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~-~~~dg------~i~iwd~~~~~~~--~~~~~~--------~~~~~v~~~~~~p~~~~l 371 (546)
.+...|.+++|++ +..++++ +..+| .+++|++++.... ..+..+ ....+-..+.+.++.+++
T Consensus 238 ~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~ 316 (434)
T 2oit_A 238 DHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV 316 (434)
T ss_dssp TSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEE
T ss_pred CCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEE
Confidence 1223799999998 6666644 33443 3899999865321 121111 112223344444777777
Q ss_pred EEEeC-CCcEEEEEC
Q 009022 372 LTTSQ-DNRLRIWDS 385 (546)
Q Consensus 372 ~s~s~-dg~i~vwd~ 385 (546)
++++. .+.|.|+..
T Consensus 317 ~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 317 LAASAASTEVSILAR 331 (434)
T ss_dssp EEEETTCSBCEEEEE
T ss_pred EEecCCCCceeEEEe
Confidence 66654 455777764
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=3.4e-18 Score=179.51 Aligned_cols=308 Identities=8% Similarity=0.033 Sum_probs=185.0
Q ss_pred eeccccCC---CeEEEEEcCCCCcEEEEEcC---------CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEE
Q 009022 164 AVIRYHSR---RVTCLEFHPTNNHILLSGDK---------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY 231 (546)
Q Consensus 164 ~~~~~h~~---~V~~l~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (546)
..+.+|.. .|.+++|||+| ++|++++. ++.|++||+.+++..... .....+..++|+|+ ++.|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPD-G~~la 125 (719)
T 1z68_A 50 TILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPV-GSKLA 125 (719)
T ss_dssp EEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSS-TTCEE
T ss_pred EEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCC-CCEEE
Confidence 34444543 48999999999 67877765 689999999987652111 11256889999999 88888
Q ss_pred EEeCCCeEEEEECCCCceeeeeecCCCC--CCCCCcc-------cceEEEEecCCCCEEEEEeCCC--------------
Q 009022 232 AASSDGTVSCTDLETGLALSLMNVNPNG--WHGPRTW-------RMLYGMDINPEKGVVLVADNFG-------------- 288 (546)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-------~~v~~~~~~~~~~~l~~~~~dg-------------- 288 (546)
++. ++.|++|++.++............ +.++..+ ....+++|+|||++|++++.+.
T Consensus 126 ~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 126 YVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp EEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred EEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 886 689999999988765432111100 0000000 1125899999999999987542
Q ss_pred --------------------cEEEEeCCCCCCC--cce---EEeecCCCcEEEEEECCCCCCEEEEEeCC----CeEEEE
Q 009022 289 --------------------FLYLVDARTNSRS--GEA---ILIHRKGSKVVGLHCNPIQPELLLSCGND----HFARIW 339 (546)
Q Consensus 289 --------------------~i~i~d~~~~~~~--~~~---~~~~~~~~~i~~~~~~p~~~~~l~~~~~d----g~i~iw 339 (546)
.|++||+.++... ..+ .....+...+..++|+| ++.++++.... ..|.+|
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~ 283 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSIC 283 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEE
Confidence 7889999876531 000 01123555789999999 77777664432 248889
Q ss_pred E----CCCCCCCceee--ecCCCCcEE-----EEEEeCCCCEEEE--EeCCC--cEEEEECCCCCCCCCCcceeeccCCc
Q 009022 340 D----IRRLEAGSSLC--DLPHKRVVN-----SAYFSPSGSKILT--TSQDN--RLRIWDSIFGNLDSPSREIVHSHDFN 404 (546)
Q Consensus 340 d----~~~~~~~~~~~--~~~~~~~v~-----~~~~~p~~~~l~s--~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (546)
| +.+++....+. ..+|...+. .+.|+|+|+.|+. +..+| .|.+|++.+++.. .+...
T Consensus 284 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-----~lt~~--- 355 (719)
T 1z68_A 284 DFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-----QITSG--- 355 (719)
T ss_dssp EECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-----ECSCS---
T ss_pred cccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-----ecccC---
Confidence 9 76555433331 024566666 7899999996554 44555 4666777655421 01111
Q ss_pred ccCCceeEEecCCCCCCceeEEeeeeeecCCCCc----CcceEEEECCc--hhh-hHhhcC---CCCCcccceeeecCCC
Q 009022 405 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA----LHPIDFIDITT--GQL-VAEVMD---PNITTISPVNKLHPRD 474 (546)
Q Consensus 405 ~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~----d~~i~iwd~~~--~~~-~~~~~~---~~~~~i~~v~~~s~~~ 474 (546)
......+.+. + |..++. ++.. .+.+++|.+.. +.. ...+.. .+...+..+ .|+|++
T Consensus 356 -~~~v~~~~~~-d---------~~~i~~--~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~s~dg 421 (719)
T 1z68_A 356 -KWEAINIFRV-T---------QDSLFY--SSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA-SFSDYA 421 (719)
T ss_dssp -SSCEEEEEEE-C---------SSEEEE--EESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE-EECGGG
T ss_pred -ceEEEEEEEE-e---------CCEEEE--EEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE-EECCCC
Confidence 1111123333 2 333321 2222 57788887653 321 122211 122344455 899999
Q ss_pred cEEEE-ec-C--CcEEEEcCCCCCcccee
Q 009022 475 DVLAS-GS-S--RSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 475 ~~l~s-gs-d--g~i~vwd~~~~~~~~~~ 499 (546)
++|+. ++ . ..+.+|++.+++.+..+
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 87774 33 2 67899999888754433
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=5.2e-17 Score=170.48 Aligned_cols=275 Identities=9% Similarity=0.024 Sum_probs=175.3
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCc-----eEEEEEecCCCCEEEEEeCC---------C
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-----VNNIRFNPTNDGTVYAASSD---------G 237 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~d---------g 237 (546)
...+++|+|+| .+|+++ |++|++||+.++.....+ .+|... ...+.|+|+ +++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccce
Confidence 35588999999 788886 899999999998876665 455432 234789999 9999888875 5
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcE---
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV--- 314 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i--- 314 (546)
.+.+||+.+++.... ..+. ..+...+|||+|+.||.+. ++.|++|++.++..... ....+...+
T Consensus 93 ~~~~~d~~~~~~~~l-~~~~---------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l--t~~g~~~~~~~g 159 (740)
T 4a5s_A 93 SYDIYDLNKRQLITE-ERIP---------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI--TWTGKEDIIYNG 159 (740)
T ss_dssp EEEEEETTTTEECCS-SCCC---------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CSCCBTTTEEES
T ss_pred EEEEEECCCCcEEEc-ccCC---------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE--cCCCCccceecC
Confidence 677999999876542 2111 1488999999999999885 68999999987653211 111111112
Q ss_pred --------------EEEEECCCCCCEEEEEeCCC------------------------------------eEEEEECCC-
Q 009022 315 --------------VGLHCNPIQPELLLSCGNDH------------------------------------FARIWDIRR- 343 (546)
Q Consensus 315 --------------~~~~~~p~~~~~l~~~~~dg------------------------------------~i~iwd~~~- 343 (546)
..+.|+| +++.|+.++.|. .|++||+.+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred cccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 3589999 999998875321 588899876
Q ss_pred --CCCCceeeec------CCCCcEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCC----CCCCCcceeeccCCcccC
Q 009022 344 --LEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQ----DNRLRIWDSIFGN----LDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 344 --~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~s~s~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~ 407 (546)
+......... ++...+..++|+|+|++++.... +..|.+||+.+++ +... ..+.. .......
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~-~~l~~-~~~~~~v 316 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA-RQHIE-MSTTGWV 316 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG-GCEEE-ECSSSCS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE-EEeee-ccCCceE
Confidence 4321222222 27778999999999997665533 3379999999886 2111 11100 1111111
Q ss_pred C---ceeEEecCCCCCCceeEEeeeee-ecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEe
Q 009022 408 T---PFRAEWDPKDPSESLAVIGRYIS-ENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 480 (546)
Q Consensus 408 ~---~~~~~~~p~~~~~~~~~~g~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sg 480 (546)
. .....|+|+ |+.++ ..........|++|++.++.... +..+. ..+..+ +.++++.|+..
T Consensus 317 ~~~~~~~p~fspD---------G~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~-~~v~~~--~~~d~~~i~f~ 380 (740)
T 4a5s_A 317 GRFRPSEPHFTLD---------GNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGT-WEVIGI--EALTSDYLYYI 380 (740)
T ss_dssp SSSSCCCCEECTT---------SSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSS-SCEEEE--EEECSSEEEEE
T ss_pred ccCcCCCceEcCC---------CCEEEEEEEcCCCceEEEEEECCCCceEe-cccCC-EEEEEE--EEEeCCEEEEE
Confidence 1 235679998 44332 11122334679999998765543 33332 344444 23446655543
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=4.9e-16 Score=146.35 Aligned_cols=261 Identities=8% Similarity=0.031 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCC------------------------CcEEEEeCCCCceeEEecccCCCceEEEEEecC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKK------------------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT 225 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (546)
-+.|.+|+++|+| +++++...+ +.|.+||..++.........+-.....|+++|+
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4579999999999 688887766 479999998887766654456667899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc-eeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEe-CCCcEEEEeCCCCCCCc
Q 009022 226 NDGTVYAASSDGTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVAD-NFGFLYLVDARTNSRSG 302 (546)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~ 302 (546)
++++++...++.|++|+..... .+..+......-........+..++++| ++.++++.+ .++.|++|+.. +....
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~ 179 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVT 179 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEE
Confidence 8888888889999999986542 3333321100000111222478999999 788888776 68999999943 33222
Q ss_pred ceEEeec--------CCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEE
Q 009022 303 EAILIHR--------KGSKVVGLHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 373 (546)
Q Consensus 303 ~~~~~~~--------~~~~i~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 373 (546)
.. .... .-.....|+++| + +.++++...++.|++|+..+++....+....+...+..++|+| +..+++
T Consensus 180 ~~-~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 180 QW-GEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EE-CEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred Ee-ccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 11 1111 112478999999 6 7788888889999999997544333332224566788999998 433332
Q ss_pred EeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhh
Q 009022 374 TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 453 (546)
Q Consensus 374 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~ 453 (546)
.+. + .+ +...+..|++|+..+++.+
T Consensus 257 ~g~---~-------------------------------------------------~v---~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 257 NGK---P-------------------------------------------------YF---GDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp ECC---C-------------------------------------------------CT---TCSCCCCEEEEETTTCCEE
T ss_pred CCC---E-------------------------------------------------Ee---ccCCCcEEEEEEcCCCeEE
Confidence 211 0 00 2233455667776666666
Q ss_pred Hhhc--CCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCC
Q 009022 454 AEVM--DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 492 (546)
Q Consensus 454 ~~~~--~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~ 492 (546)
..+. ..+......+ +++|+|.++++.. ++.|++|++..
T Consensus 282 ~~~~~~~~~~~~p~~i-a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 282 DVFKPVRKHFDMPHDI-VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCSSSCCSSEEEE-EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCCccCCeeEE-EECCCCCEEEEECCCCEEEEEeCCc
Confidence 5543 1223455667 8999998888877 89999999864
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=7.1e-18 Score=172.39 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=158.9
Q ss_pred CCCceEEEEEecCCCCEEEEEeC-CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC---CC
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FG 288 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg 288 (546)
+..+|.+++|+|+ ++.|++++. +|++.||++.++........+. ..+..++|+|+ +++++++. +.
T Consensus 20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~---------~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETVKLNREPI---------NSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEEECCSSCC---------SEECEECTTCS-EEEEEEECSTTSC
T ss_pred hccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcEeeecccc---------cccccccCCCC-eEEEEeccCCCCc
Confidence 4568999999999 999998877 9999999997766544322111 14888999999 77777664 45
Q ss_pred cEEEEeCCC--CCCCcceEEeecCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEe
Q 009022 289 FLYLVDART--NSRSGEAILIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS 365 (546)
Q Consensus 289 ~i~i~d~~~--~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 365 (546)
...+|.+.. ..... ..... ..+...+|+| +++ .+++.+.++.+.+||+.+++.. ....+.. .+++|+
T Consensus 89 ~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~---~l~~~~~--~~~~~s 158 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLR---ELARLPG--FGFVSD 158 (582)
T ss_dssp CEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEE---EEEEESS--CEEEEE
T ss_pred ceEEEEEeccCCCccc---cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEE---EeecCCC--ceEEEC
Confidence 455554433 21111 11111 1344567777 554 3444444555669999764432 2122222 789999
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCc-
Q 009022 366 PSGSKILTTSQD----NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH- 440 (546)
Q Consensus 366 p~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~- 440 (546)
|+|++|++++.+ +.|++||+.+++... +..+ .......+|+|+ |++++ ++..++
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-----l~~~----~~~~~~~~~SpD---------G~~l~---~~~~~~~ 217 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-----FDSG----EGSFSSASISPG---------MKVTA---GLETARE 217 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCEE-----ECCS----SCEEEEEEECTT---------SCEEE---EEECSSC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-----eecC----CCccccceECCC---------CCEEE---EccCCCe
Confidence 999999988877 789999998876421 1111 112257899999 66666 444556
Q ss_pred -ceEEEECCchhhhHhhcCCCCCcccceee--------ecCCCcEEEEec-CCcEEEEcCCCCCcc
Q 009022 441 -PIDFIDITTGQLVAEVMDPNITTISPVNK--------LHPRDDVLASGS-SRSIFIWRPKEKSEL 496 (546)
Q Consensus 441 -~i~iwd~~~~~~~~~~~~~~~~~i~~v~~--------~s~~~~~l~sgs-dg~i~vwd~~~~~~~ 496 (546)
.|++||+.+++.. .+.++. ..+..+ + |+|+|.++++++ ++.++||++ |+.+
T Consensus 218 ~~i~~~d~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE-DLELPS-KDFSSY-RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEEEECTTTCCEE-ECCCSC-SHHHHH-CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred eEEEEEcCCCCcEE-EccCCC-cChhhh-hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 8999999998877 444443 555556 6 999998888888 999999999 6544
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=9.7e-18 Score=162.75 Aligned_cols=288 Identities=13% Similarity=0.069 Sum_probs=175.5
Q ss_pred CeEEEEEcCCCCcEEEEE-cCC--CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 172 RVTCLEFHPTNNHILLSG-DKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
.+.+++|+|+|. +|+.. ..+ ..|.+|++.+++..... ..+......+.|+|+ +++|+.++.++.|++|++.+++
T Consensus 37 ~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD-ERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT-SSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC-CCEEEEEEcCCcEEEEECCCCC
Confidence 377889999995 55544 333 46888898877644332 333323334889999 9999999999999999999887
Q ss_pred eeeeeecCCCCCCCCCcccceE-------------EEEecCCCCEEEEE-----eCCCcEEEEeCCCCCCCcceEEeecC
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLY-------------GMDINPEKGVVLVA-----DNFGFLYLVDARTNSRSGEAILIHRK 310 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~ 310 (546)
.......+.. +.... ..+. .+.|+|+++.++.+ ..+..|++||+.++... ....+
T Consensus 114 ~~~~~~~~~~-~~~~g--~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~ 186 (396)
T 3c5m_A 114 EQVIYTVDEE-WKGYG--TWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQD 186 (396)
T ss_dssp EEEEEECCTT-EEEEE--EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEEE
T ss_pred cEEEEecccc-cCCCC--CEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE----eeccC
Confidence 6655543321 00000 0000 03467888777654 35678999999876532 12233
Q ss_pred CCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCCCceeeecCC--CCcEEEEEEeCCCCEEEEEeCC-----
Q 009022 311 GSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPH--KRVVNSAYFSPSGSKILTTSQD----- 377 (546)
Q Consensus 311 ~~~i~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~s~d----- 377 (546)
...+..+.|+|.++..|+..+.+ ..|.+|++..... ..+ ..+ ...+..+.|+|+|++|+.++.+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKI--KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EES--SCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEe--eccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 44788999999446656555433 4688888864332 111 122 2358889999999988777554
Q ss_pred CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecC-CCCCCceeEEeeeeeec-------------CCCCcCcceE
Q 009022 378 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-KDPSESLAVIGRYISEN-------------YNGAALHPID 443 (546)
Q Consensus 378 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~g~~~~~~-------------~~g~~d~~i~ 443 (546)
+.|++||+.+++... +. . ... ....|+| + |++++.. +....+..|+
T Consensus 264 ~~l~~~d~~~g~~~~----l~-~--~~~----~~~~~s~~d---------g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 264 RVIYKANPETLENEE----VM-V--MPP----CSHLMSNFD---------GSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp EEEEEECTTTCCEEE----EE-E--CCS----EEEEEECSS---------SSEEEEEECCC----------CCCCCCEEE
T ss_pred ceEEEEECCCCCeEE----ee-e--CCC----CCCCccCCC---------CceEEEecCCcceeeccccccccCCCCcEE
Confidence 449999998765311 11 1 111 1267888 6 3333211 0112457899
Q ss_pred EEECCchhhhHhhcCCCCC----------cccceeeecCCCcEEEEec--CCcEEEE--cCCCCC
Q 009022 444 FIDITTGQLVAEVMDPNIT----------TISPVNKLHPRDDVLASGS--SRSIFIW--RPKEKS 494 (546)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~----------~i~~v~~~s~~~~~l~sgs--dg~i~vw--d~~~~~ 494 (546)
+||+.+++.. .+..+... ....+ +|+|+|+.|+.++ ++...|| ++.++.
T Consensus 324 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 324 VLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHP-SFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred EEecccCceE-EccCCCCccccccccccCCCCCc-eEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 9999887643 34333311 13344 7999999888765 4555555 444544
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.7e-16 Score=164.97 Aligned_cols=300 Identities=13% Similarity=0.043 Sum_probs=184.2
Q ss_pred eeeeccccCCCeEEEEEcCCCCcEEEEE--cCCCcEEEEeCCCCceeEEecccCCCceE---------EEEEe--cCCCC
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNHILLSG--DKKGQVGVWDFYKVSEKIVYGNIHSCIVN---------NIRFN--PTNDG 228 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~ 228 (546)
....+.+|...|..++|++++ .++++. +.++...||..........+ ..|...+. ...|+ |+ ++
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD-g~ 91 (662)
T 3azo_A 15 DAALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA-GG 91 (662)
T ss_dssp CHHHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS-SS
T ss_pred CHHHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC-CC
Confidence 345688899999999999876 566766 66889999996544444444 45655655 66676 88 66
Q ss_pred E-EEEEeC-CCeEEEEECC--C-CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC----------CcEEEE
Q 009022 229 T-VYAASS-DGTVSCTDLE--T-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----------GFLYLV 293 (546)
Q Consensus 229 ~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~ 293 (546)
. |+.++. +..|++|++. . +... .+..... ......+..++|+|+|+.|++++.+ ..|++|
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSA----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCC----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCcc----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 6 665543 5677777776 3 4332 2221100 0011247899999999999998876 589999
Q ss_pred eCCC------CCCCcceEEee-cCCCcEEEEEECCCCCCEEEEEeCC--------CeEEEEECC-CCCCCceeeec-CCC
Q 009022 294 DART------NSRSGEAILIH-RKGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIR-RLEAGSSLCDL-PHK 356 (546)
Q Consensus 294 d~~~------~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~-~~~ 356 (546)
++.+ +.. .... .+...+..++|+| ++++|+.++.+ ..|++||+. ++......... ++.
T Consensus 167 ~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 167 PLDGSAAADRSAV----RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp ETTSTTTTCGGGS----EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ECCCCccccCCce----eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 9987 332 1222 3334778899999 99999877754 479999997 33111122222 356
Q ss_pred CcEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCCCCCCCcceeecc-CCc--c-cCCceeEEecCCCCCCceeEEeeee
Q 009022 357 RVVNSAYFSPSGSKILTTSQDN--RLRIWDSIFGNLDSPSREIVHSH-DFN--R-HLTPFRAEWDPKDPSESLAVIGRYI 430 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~p~~~~~~~~~~g~~~ 430 (546)
..+..+.|+|+|+++++++.++ .|.+||+.+++.... .... ... . ......++|+|+ ++++
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l----~~~~~~~~~p~w~~~~~~~~~~~~---------~~~~ 308 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL----CRREEEFAGPLWTPGMRWFAPLAN---------GLIA 308 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES----SCCSSBSSCCCCSTTCCSEEECTT---------SCEE
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec----ccccccccCccccccCceEeEeCC---------CEEE
Confidence 7899999999999888888888 566666655543110 0000 000 0 000123445554 5555
Q ss_pred eecCCCCcCcceEEE--ECCchhhhHhhcCCCCCcccceeeecCCCcEEE--Eec-C--CcEEEEcCCCCCc
Q 009022 431 SENYNGAALHPIDFI--DITTGQLVAEVMDPNITTISPVNKLHPRDDVLA--SGS-S--RSIFIWRPKEKSE 495 (546)
Q Consensus 431 ~~~~~g~~d~~i~iw--d~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~--sgs-d--g~i~vwd~~~~~~ 495 (546)
+ ++.. +.++|| ++.+++ +..+..+. ..+..+ +++++..++ +++ + ..|.+|++.+++.
T Consensus 309 ~---~~~~-~~~~l~~~d~~~~~-~~~l~~~~-~~~~~~--~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 309 V---VHGK-GAAVLGILDPESGE-LVDAAGPW-TEWAAT--LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp E---EEBS-SSCEEEEEETTTTE-EEECCSSC-CEEEEE--EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred E---EEEc-CccEEEEEECCCCc-EEEecCCC-CeEEEE--EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 4 4455 788888 665555 45554443 444432 266665433 344 4 3566667767654
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=2.9e-16 Score=149.55 Aligned_cols=291 Identities=8% Similarity=-0.030 Sum_probs=183.8
Q ss_pred CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEEEECCCCceeeeeecCCCCC
Q 009022 191 KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 191 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
.|+.|.+||..+++....+ ..+..+ .++|+|+ +++|+++. .++.|.+||+.+.+.+..+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 3789999999988877666 344444 8999999 88888876 36789999999998888876543211
Q ss_pred CCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 261 HGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
. .......++++|+|++|+++.. ++.|.+||+.+.+....+ .... ....+.+.|.....+++.+.||.+.+
T Consensus 105 ~---~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~---i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 105 Q---GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV---TAAA-GCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp C---BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE---GGGT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred c---cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE---ecCC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence 0 0013567899999999999864 589999999987543210 1111 23335677744477888889999999
Q ss_pred EECCCCCCCc-ee---eec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccC-----Cc-ccC
Q 009022 339 WDIRRLEAGS-SL---CDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD-----FN-RHL 407 (546)
Q Consensus 339 wd~~~~~~~~-~~---~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~-~~~ 407 (546)
|++....... .. ..+ ....++ .+.++|++..++..+.++.|.++|+........ . ...... .. ...
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD-G-PWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE-E-EEESCCHHHHHTTCEEC
T ss_pred EEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceec-c-cccccCccccccccccC
Confidence 9985421111 00 011 112222 334467787888888899999999875432100 0 000000 00 000
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEE
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFI 487 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~v 487 (546)
....++++|+.....+...-.- .........+.|.+||+.+++.+.++..+. ...+ +|+|+|++|++++.+.|.|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~-~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~i-a~spdg~~l~v~n~~~v~v 329 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDG-KEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSM-TIDQQRNLMLTLDGGNVNV 329 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSC-CTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEE-EEETTTTEEEEECSSCEEE
T ss_pred CeeEEEEecCCCeEEEEEccCC-CcccccCCCceEEEEECCCCcEEEEEecCC---eeEE-EECCCCCEEEEeCCCeEEE
Confidence 0112566776321111000000 000000123579999999999999887765 6677 8999999999877899999
Q ss_pred EcCCCC--Cccceee
Q 009022 488 WRPKEK--SELVEQK 500 (546)
Q Consensus 488 wd~~~~--~~~~~~~ 500 (546)
||+.++ +.+.++.
T Consensus 330 ~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 330 YDISQPEPKLLRTIE 344 (361)
T ss_dssp EECSSSSCEEEEEET
T ss_pred EECCCCcceeeEEec
Confidence 999999 8888863
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=1.9e-15 Score=139.42 Aligned_cols=199 Identities=11% Similarity=0.156 Sum_probs=142.4
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc-----cCCCceEEEEEe-cCCCCEEEEEeC-CCeEE
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFN-PTNDGTVYAASS-DGTVS 240 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~l~s~~~-dg~i~ 240 (546)
+|-..+.+|++++++ +++++...++.|.+|+.. +.....+.. .+...+..+++. ++ +.++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEE
Confidence 566789999999999 688888889999999987 444443321 244578899995 54 656655543 78999
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
+|+ .+++.+..+..... ..+.+++++++++++++...++.|.+|+... .... ..........+.+++++
T Consensus 104 ~~d-~~g~~~~~~~~~~~--------~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~-~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATIL--------QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH-KFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp EEC-TTSCEEEEECTTTC--------SCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE-EEECTTTCSSEEEEEEC
T ss_pred EEC-CCCcEEEEecCccC--------CCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE-EeCCCCccCCcEEEEEC
Confidence 999 55666555432211 1478999999999888878889999999643 2111 11111233468999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeec---CCCCcEEEEEEeCCCCEEEEEeCCC-cEEEEEC
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDS 385 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~s~dg-~i~vwd~ 385 (546)
| +++++++...++.|++|+... ..+..+ ++...+..|+++|+|+++++...++ .|.+|+.
T Consensus 173 ~-~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 173 D-KQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp S-SSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred C-CCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 9 888888878899999999742 233333 2235789999999999888887776 9999985
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=1.3e-16 Score=151.96 Aligned_cols=251 Identities=15% Similarity=0.108 Sum_probs=156.4
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC-----CCceEEEEEecCCCCEEEEEeCC----------
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-----SCIVNNIRFNPTNDGTVYAASSD---------- 236 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d---------- 236 (546)
.+..++|+|+|..+++++..++.|.+||+.+++....+...+ ...+..++|+|+ +++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC-CCEEEEEccccccccccccc
Confidence 577899999995456677788999999999887766553223 233789999999 8888888865
Q ss_pred --CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC---
Q 009022 237 --GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG--- 311 (546)
Q Consensus 237 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--- 311 (546)
+.|.+||+.+++....+...... ..+.+++|+|+++ +++++. .|++||+.+++..... ......
T Consensus 123 ~~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~-~~~~~~~~~ 191 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEAKPVRTFPMP-------RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVAL-PLRNWNRKG 191 (349)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEECC-------SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEE-CSTTCCCTT
T ss_pred CCCeEEEEECCCccccceeeeccCC-------CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccc-cccccCCcc
Confidence 89999999886543322111000 1377899999999 666543 4999999886643211 111000
Q ss_pred -------------------CcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCE
Q 009022 312 -------------------SKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSK 370 (546)
Q Consensus 312 -------------------~~i~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 370 (546)
.....+++++ ++...... .....+..++..+... ..+....+...+..++|+| ++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFK-DDKQDPATADLLYGYLSVDLKTGKT-HTQEFADLTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECSSCTTE
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecC-CCcCCccccccceeEEEEeccCCcE-EecccccCCCcceeeEecCCCCCE
Confidence 0234455654 32111000 0011122244433221 1111112455688999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 371 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
|+++ ++.|.+||+.+++.... ... ...+..++|+|+ |+++. .++.++.|.+||+.++
T Consensus 270 l~~~--~~~v~~~d~~~~~~~~~-------~~~--~~~~~~~~~s~d---------g~~l~---~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 270 IYGV--LNRLAKYDLKQRKLIKA-------ANL--DHTYYCVAFDKK---------GDKLY---LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEE--ESEEEEEETTTTEEEEE-------EEC--SSCCCEEEECSS---------SSCEE---EESBSSEEEEEETTTT
T ss_pred EEEE--cCeEEEEECccCeEEEE-------EcC--CCCccceEECCC---------CCEEE---EecCCCeEEEEecccc
Confidence 9988 88999999988764221 111 122457889998 55554 3456799999999999
Q ss_pred hhhHhhcCC
Q 009022 451 QLVAEVMDP 459 (546)
Q Consensus 451 ~~~~~~~~~ 459 (546)
+.+..+..+
T Consensus 327 ~~~~~~~~~ 335 (349)
T 1jmx_B 327 EKVKNIKLP 335 (349)
T ss_dssp EEEEEEECS
T ss_pred ceeeeeecC
Confidence 888777544
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=2e-16 Score=151.46 Aligned_cols=257 Identities=10% Similarity=0.026 Sum_probs=160.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCC-CCceeEEecccCCCceEEEEEecCCCCE--EEEEe------------
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY-KVSEKIVYGNIHSCIVNNIRFNPTNDGT--VYAAS------------ 234 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~s~~------------ 234 (546)
...+..++|+|+| ++|++++.+ .|.+|++. ++...........+.+.+++|+|+ +++ ++++.
T Consensus 39 ~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC-CCEEEEEEecCCcceeccceee
Confidence 3467789999999 678888777 99999997 555433221111123567899999 774 44543
Q ss_pred -CCCeEEEEECC-CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CCCcEEEEeCC-CCCCCcceEEee--
Q 009022 235 -SDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDAR-TNSRSGEAILIH-- 308 (546)
Q Consensus 235 -~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~-- 308 (546)
.+|.+.+|++. .+.....+..... .....+.+++|+|+|++|+++. .++.|++|++. +++... .....
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~ 189 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEY-----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAP 189 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECS
T ss_pred cCCceEEEEccCCCCcCcceEeeEEe-----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecC
Confidence 68999999997 4554433322100 0011488999999999888776 46799999998 554321 11121
Q ss_pred cCCCcEEEEEECCCCCCEEEEEeC-CCeEEEEECCC--CCCC---ceeeecC-----CCC------cEEEEE-EeCCCCE
Q 009022 309 RKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRR--LEAG---SSLCDLP-----HKR------VVNSAY-FSPSGSK 370 (546)
Q Consensus 309 ~~~~~i~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~--~~~~---~~~~~~~-----~~~------~v~~~~-~~p~~~~ 370 (546)
.+...+..++|+| ++++|++++. ++.|.+|++.. ++.. ..+..+. +.. .+..++ |+|+|++
T Consensus 190 ~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 190 DPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp STTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 1245689999999 9988877764 78999998753 2211 1122221 122 588999 9999999
Q ss_pred EEEEeCCC------cEEEEECC-CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCC-cCcce
Q 009022 371 ILTTSQDN------RLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA-ALHPI 442 (546)
Q Consensus 371 l~s~s~dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~-~d~~i 442 (546)
|++++.+. .|.+|++. ++++. .+...... ....+..++|+|..- +|++++ +++ .++.|
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~----~~~~~~~~-~~~~~~~~a~sp~~~------dg~~l~---v~~~~~~~v 334 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIE----KQLFLSPT-PTSGGHSNAVSPCPW------SDEWMA---ITDDQEGWL 334 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEE----EEEEEEEC-SSCCTTCCCEEECTT------CTTEEE---EECSSSCEE
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEE----Eeeeeeec-CCCCcccceecCCCc------CCCEEE---EEEcCCCeE
Confidence 88776432 89999996 44421 10000000 011223566777200 266665 333 45899
Q ss_pred EEEECCch
Q 009022 443 DFIDITTG 450 (546)
Q Consensus 443 ~iwd~~~~ 450 (546)
.||++...
T Consensus 335 ~v~~~~~~ 342 (365)
T 1jof_A 335 EIYRWKDE 342 (365)
T ss_dssp EEEEEETT
T ss_pred EEEEEchh
Confidence 99998654
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=2.7e-16 Score=165.09 Aligned_cols=258 Identities=10% Similarity=0.082 Sum_probs=164.5
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-------
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------- 287 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 287 (546)
....++.|+|+ +.+|+++ |+.|++||+.+++....+..+.... .......++|||||++|++++.+
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE----FGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT----CCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhh----hcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 34678999999 8788876 8999999999998876665543211 11123458899999999998875
Q ss_pred --CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcE------
Q 009022 288 --GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV------ 359 (546)
Q Consensus 288 --g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v------ 359 (546)
+.+++||+.+++... ...+...+..++|+| +++.||.+. ++.|++|++.++... .+...++...+
T Consensus 90 ~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLIT----EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSY-RITWTGKEDIIYNGITD 162 (740)
T ss_dssp EEEEEEEEETTTTEECC----SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCE-ECCSCCBTTTEEESBCC
T ss_pred cceEEEEEECCCCcEEE----cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceE-EEcCCCCccceecCccc
Confidence 667899999876432 233445799999999 999998885 789999999765432 22111332222
Q ss_pred -----------EEEEEeCCCCEEEEEeCCC------------------------------------cEEEEECCC---CC
Q 009022 360 -----------NSAYFSPSGSKILTTSQDN------------------------------------RLRIWDSIF---GN 389 (546)
Q Consensus 360 -----------~~~~~~p~~~~l~s~s~dg------------------------------------~i~vwd~~~---~~ 389 (546)
..+.|||+|++||.++.|. .|++||+.+ +.
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 3489999999999886432 366667665 42
Q ss_pred CCCCCcceeeccCC-cccCCceeEEecCCCCCCceeEEeeeeeec-CCCCcCcceEEEECCchh----hh--Hhh--cCC
Q 009022 390 LDSPSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTGQ----LV--AEV--MDP 459 (546)
Q Consensus 390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~-~~g~~d~~i~iwd~~~~~----~~--~~~--~~~ 459 (546)
.... ..+.....+ ........+.|+|+ |++++.. ..+..+..|.+||+.+|+ +. ..+ .++
T Consensus 243 ~~~~-~~l~~~~~~~~~~~~~~~~~wspd---------g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 243 NATS-IQITAPASMLIGDHYLCDVTWATQ---------ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp CCCE-EEECCCHHHHTSCEEEEEEEEEET---------TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred cceE-EEecCCccCCCCCeEEEEEEEeCC---------CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 1000 000000000 01112346789998 4422211 134556789999999987 22 222 223
Q ss_pred CCCcc-----cceeeecCCCcEEE-Eec--C--CcEEEEcCCCCCccce
Q 009022 460 NITTI-----SPVNKLHPRDDVLA-SGS--S--RSIFIWRPKEKSELVE 498 (546)
Q Consensus 460 ~~~~i-----~~v~~~s~~~~~l~-sgs--d--g~i~vwd~~~~~~~~~ 498 (546)
. ..+ ... +|+|||+.|+ ..+ + ..|++|++..+.....
T Consensus 313 ~-~~v~~~~~~~p-~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 313 T-GWVGRFRPSEP-HFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp S-SCSSSSSCCCC-EECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred C-ceEccCcCCCc-eEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence 2 222 244 7999999877 554 3 5788889887665433
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=3.8e-15 Score=140.77 Aligned_cols=275 Identities=9% Similarity=0.005 Sum_probs=175.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.|.++.|++++ ..++..+.++.+++| .......+ ..+...+.+++|+|+ +++++++..++.|.+||..+++...
T Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 7 DLPTLFYSGKS-NSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCBCCSCGGG-GCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEE
T ss_pred ccceeeecCCc-cceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEE
Confidence 46788899987 567776778899999 23333344 346667799999998 8888888889999999999887655
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
...... ..+.+++++++++++++...+ +.|.+||..+..... ..........+.+++++| ++.++
T Consensus 81 ~~~~~~---------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~i~~d~-~g~l~ 149 (333)
T 2dg1_A 81 PFVSHK---------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDS-KGGFY 149 (333)
T ss_dssp EEECSS---------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECT-TSCEE
T ss_pred EeeCCC---------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE-EEccCccCCcccceEECC-CCCEE
Confidence 432211 148999999999988877766 689999988765321 111112334789999999 88877
Q ss_pred EEEeC------CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE-EEeCCCcEEEEECCC-CCCCCCCcceee
Q 009022 328 LSCGN------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL-TTSQDNRLRIWDSIF-GNLDSPSREIVH 399 (546)
Q Consensus 328 ~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~s~dg~i~vwd~~~-~~~~~~~~~~~~ 399 (546)
++... .+.|..|+...... .........+..++|+|++++|+ +.+.++.|.+|++.+ +..........
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~- 225 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI- 225 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCE---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE-
T ss_pred EEeccccccCCCceEEEEeCCCCEE---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE-
Confidence 76653 35676776643222 11112334578999999998664 445678999999864 32211000000
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCC-----CcccceeeecCCC
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI-----TTISPVNKLHPRD 474 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~~v~~~s~~~ 474 (546)
...+.....+..++++++ |.+.+ +...++.|.+|+. +++.+..+..+.. ..+..+ +|+|++
T Consensus 226 ~~~~~~~~~~~~i~~d~~---------G~l~v---~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~-~~~~dg 291 (333)
T 2dg1_A 226 PYYFTGHEGPDSCCIDSD---------DNLYV---AMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP-QFIPGT 291 (333)
T ss_dssp EEECCSSSEEEEEEEBTT---------CCEEE---EEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE-EECTTS
T ss_pred EEecCCCCCCCceEECCC---------CCEEE---EEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceE-EECCCC
Confidence 001111123345677776 44443 2334578999998 4665555543321 145566 899998
Q ss_pred cEEEEec
Q 009022 475 DVLASGS 481 (546)
Q Consensus 475 ~~l~sgs 481 (546)
..|+.++
T Consensus 292 ~~L~v~~ 298 (333)
T 2dg1_A 292 NQLIICS 298 (333)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 7776555
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=6.6e-15 Score=142.32 Aligned_cols=264 Identities=13% Similarity=0.070 Sum_probs=165.6
Q ss_pred EEeCCCCceeEEecccCCCceEE-----EEEecCCCCEEEEEeC-CC--eEEEEECCCCceeeeeecCCCCCCCCCcccc
Q 009022 197 VWDFYKVSEKIVYGNIHSCIVNN-----IRFNPTNDGTVYAASS-DG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 197 iwd~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (546)
.++..++.....+ ..|...... .+|+|+ +++|+.++. +| .|.+||+.+++.......+.. .
T Consensus 14 ~~~~~~g~~~~~l-t~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~---------~ 82 (388)
T 3pe7_A 14 YQDASTGAQVTRL-TPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD---------N 82 (388)
T ss_dssp EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB---------C
T ss_pred EecCCCCcceEEe-cCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC---------C
Confidence 3455556555555 455555555 789999 888888877 66 488899998887665433221 2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE--EECCCCCCEEEEE----------------
Q 009022 269 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL--HCNPIQPELLLSC---------------- 330 (546)
Q Consensus 269 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~--~~~p~~~~~l~~~---------------- 330 (546)
+..+.|+|+++.|+.+..++.|++||+.+++... + ...+...+... .++| ++.+++..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~--~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V--YQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e--eechhhcccccceeECC-CCCeeccccccCcccccccccchh
Confidence 3356799999999999999999999999875432 1 22222234333 3478 88877742
Q ss_pred ------eCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEeCC------CcEEEEECCCCCCCCCCcce
Q 009022 331 ------GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQD------NRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 331 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~ 397 (546)
..+..|++||+.+++. .....+...+..+.|+| +|+.|+.++.. ..|.++++..+....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----- 230 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGES---TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK----- 230 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCE---EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-----
T ss_pred hhhhccCCcceEEEEECCCCce---EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-----
Confidence 2447899999976542 22234566789999999 99998877753 378888876554311
Q ss_pred eeccCCcccCCceeEEecCCCCCCceeEEeeeeeecC--CCCcCcceEEEECCchhhhH--hhcCCC--CCcccceeeec
Q 009022 398 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAALHPIDFIDITTGQLVA--EVMDPN--ITTISPVNKLH 471 (546)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~g~~d~~i~iwd~~~~~~~~--~~~~~~--~~~i~~v~~~s 471 (546)
+.. ...........|+|+ |+.++... .+..+..|++||+.+++... .+.++. ......+ +|+
T Consensus 231 l~~--~~~~~~~~~~~~spd---------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~-~~s 298 (388)
T 3pe7_A 231 VKT--HAEGESCTHEFWVPD---------GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS-LMV 298 (388)
T ss_dssp SCC--CCTTEEEEEEEECTT---------SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS-EEE
T ss_pred eee--CCCCcccccceECCC---------CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC-eEc
Confidence 000 010011235789998 43332110 23333459999999887422 222200 0012223 699
Q ss_pred CCCcEEEEe---------c-CCcEEEEcCCCCCc
Q 009022 472 PRDDVLASG---------S-SRSIFIWRPKEKSE 495 (546)
Q Consensus 472 ~~~~~l~sg---------s-dg~i~vwd~~~~~~ 495 (546)
|+|+.|+.. . +..|++||+.+++.
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTEE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 999988853 4 67999999988764
No 173
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=4.3e-13 Score=124.36 Aligned_cols=287 Identities=6% Similarity=-0.027 Sum_probs=187.9
Q ss_pred ccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 166 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 166 ~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
+..+...+.+|++.++| +++++...++.|.+|+.. +.........+...+.++++.++ +.++++...++.|..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC
Confidence 44466789999999999 677776667899999988 44333322334567899999998 8877777768899999986
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+.. ..+.... ....+.++++.+++.++++...++.|..||. ++... ..........+..+++.+ ++.
T Consensus 87 -g~~-~~~~~~~-------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~--~~~~~~~~~~~~~i~~~~-~g~ 153 (299)
T 2z2n_A 87 -GII-KEYTLPN-------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR--EYELPNKGSYPSFITLGS-DNA 153 (299)
T ss_dssp -SCE-EEEECSS-------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE--EEECSSTTCCEEEEEECT-TSC
T ss_pred -CcE-EEEeCCC-------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE--EecCCCCCCCCceEEEcC-CCC
Confidence 332 2232211 1124789999999988888777889999998 43321 112222334689999999 888
Q ss_pred EEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcc
Q 009022 326 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (546)
++++....+.|.+||. +... ..+........+.++++++++.++++...++.|.+|+. ++.... .... ..
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-----~~~~--~~ 223 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDI-TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-----FKIP--TP 223 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-----EECS--ST
T ss_pred EEEEeCCCCEEEEEcC-CCcE-EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-----EECC--CC
Confidence 8777777789999998 4332 11111234456889999999997777767889999998 554311 1000 11
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc-CCCCCcccceeeecCCCcEEEEecCCc
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLASGSSRS 484 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~sgsdg~ 484 (546)
...+..++++++ |.+.+ +...++.|.+|+. +++. ..+. ......+.++ ++ ++|+++++.+.+.
T Consensus 224 ~~~~~~i~~~~~---------g~l~v---~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i-~~-~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 224 NARPHAITAGAG---------IDLWF---TEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGI-CF-DGETIWFAMECDK 287 (299)
T ss_dssp TCCEEEEEECST---------TCEEE---EETTTTEEEEEET-TTEE-EEEECSSSSCCEEEE-EE-CSSCEEEEETTTE
T ss_pred CCCceeEEECCC---------CCEEE---eccCCceEEEECC-CCce-EEEeCCCCCCccceE-Ee-cCCCEEEEecCCc
Confidence 223456777776 44333 2334577999998 4432 2221 1222455666 77 8888888766677
Q ss_pred EEEEcCCCCC
Q 009022 485 IFIWRPKEKS 494 (546)
Q Consensus 485 i~vwd~~~~~ 494 (546)
|..++..+++
T Consensus 288 l~~~~~~~~~ 297 (299)
T 2z2n_A 288 IGKLTLIKDN 297 (299)
T ss_dssp EEEEEEC---
T ss_pred EEEEEcCccc
Confidence 7778876653
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=4.5e-14 Score=130.88 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=142.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..+..+.....+++|+|+|..+++++..++.|.+|+..++ ...+ ..+...+.+++|+|+ +.++++...++.|.+||
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT-CCEEEEETTTTEEEEEC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC-CcEEEEecCCCeEEEEc
Confidence 4555667788899999999448889999999999999877 3333 346778999999998 88877777778999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE----e-------------CCCcEEEEeCCCCCCCcceEE
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA----D-------------NFGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~ 306 (546)
..+++.......... .....+..++++|+|+++++. + ..+.|+.++.. +. ...
T Consensus 97 ~~~g~~~~~~~~~~~-----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~ 166 (296)
T 3e5z_A 97 EPGGEWESIADSFEG-----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT----LSA 166 (296)
T ss_dssp STTCCEEEEECEETT-----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC----EEE
T ss_pred CCCCcEEEEeeccCC-----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC----EEE
Confidence 988876543321111 011136789999999988873 2 13466666654 22 112
Q ss_pred eecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCC---CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEE
Q 009022 307 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEA---GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI 382 (546)
Q Consensus 307 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~v 382 (546)
..........++|+| +++.|++.+.++.|++|++.. +.. ...+ ..+...+.+++++++|+++++. ++.|.+
T Consensus 167 ~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp EECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred eecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 233344678999999 888887777889999999862 221 1111 2244456788999999866655 778888
Q ss_pred EECC
Q 009022 383 WDSI 386 (546)
Q Consensus 383 wd~~ 386 (546)
|+..
T Consensus 242 ~~~~ 245 (296)
T 3e5z_A 242 LTPD 245 (296)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 8864
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=1.2e-13 Score=138.13 Aligned_cols=283 Identities=14% Similarity=0.123 Sum_probs=191.4
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC--CCceeeeeecCC
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNP 257 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 257 (546)
|.+ .++++...+++|.++|..+++.+..+. ....+..+.|+|+ ++++++++.++.|.+||+. +++.+..+....
T Consensus 165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp GGG-EEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCc-eEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence 434 677888889999999999988887764 3345679999999 9999999999999999996 777776665432
Q ss_pred CCCCCCCcccceEEEEec----CCCCEEEEEe-CCCcEEEEeCCCCCCCcceEEeec-------C-CCcEEEEEECCCCC
Q 009022 258 NGWHGPRTWRMLYGMDIN----PEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR-------K-GSKVVGLHCNPIQP 324 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-------~-~~~i~~~~~~p~~~ 324 (546)
....++|+ |+|++++++. ..+.|.++|..+.+....+..... + ...+..+..++...
T Consensus 241 ----------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 241 ----------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp ----------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred ----------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 36789999 6999888876 458999999888765543321110 1 12577888888445
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCCCCCCcceeeccCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDF 403 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (546)
.+++.....|.|.++|....... .+...........+.|+|++++|++++ .++.|.++|+.++++... +.....
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~-~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~----i~vgg~ 385 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNL-KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI----EDTGGQ 385 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEE-EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE----EECSSS
T ss_pred EEEEEecCCCeEEEEecCCCccc-eeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE----EeccCc
Confidence 56666677899999998654321 222234455677899999999987766 578999999998765221 111000
Q ss_pred cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCc-------hhhhHhhcCCCCCcccceeeecCCCcE
Q 009022 404 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-------GQLVAEVMDPNITTISPVNKLHPRDDV 476 (546)
Q Consensus 404 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~-------~~~~~~~~~~~~~~i~~v~~~s~~~~~ 476 (546)
..+...-...++|+. |.+.+. +...++.|.++++.+ .+.++++.... ..-..+ .++|++++
T Consensus 386 ~Phpg~g~~~~~p~~--------g~v~~t--~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~i-~~~p~~~~ 453 (567)
T 1qks_A 386 TPHPGRGANFVHPTF--------GPVWAT--SHMGDDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFI-KTHPNSQY 453 (567)
T ss_dssp SBCCTTCEEEEETTT--------EEEEEE--EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCE-ECCTTCSE
T ss_pred CCCCccceeeECCCC--------CcEEEe--CCCCCCeEEEecCCCCCCccccCEEEEEEecCC-CCCEEE-EeCCCCCe
Confidence 111100011134542 333321 122457899999988 56666666543 222334 78999998
Q ss_pred EEEec--------CCcEEEEcCCCC
Q 009022 477 LASGS--------SRSIFIWRPKEK 493 (546)
Q Consensus 477 l~sgs--------dg~i~vwd~~~~ 493 (546)
|.... .++|.|+|+.+.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 88854 259999999876
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=1e-14 Score=138.87 Aligned_cols=268 Identities=9% Similarity=0.028 Sum_probs=170.6
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEeccc-----CCCceEEEEEecCCCCE
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTNDGT 229 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~ 229 (546)
.+..+..+ .++|+|+| ++|+++. .++.|.+||+.+.+....+... +......++|+|+ +++
T Consensus 46 ~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd-g~~ 121 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD-GKF 121 (361)
T ss_dssp EEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT-SSE
T ss_pred EecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC-CCE
Confidence 44445545 89999999 5666664 3678999999887776665322 2345678999999 888
Q ss_pred EEEEeC--CCeEEEEECCCCceeee-eecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceE
Q 009022 230 VYAASS--DGTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 230 l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~ 305 (546)
|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.+|.+.+|++..........
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-----------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~ 190 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAG-----------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS 190 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGGGTT-----------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEecCCC-----------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence 888764 58999999999988766 54321 2334566654 677788889999998876522111000
Q ss_pred ----EeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec---C----C----CCcEEEEEEeCCCCE
Q 009022 306 ----LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---P----H----KRVVNSAYFSPSGSK 370 (546)
Q Consensus 306 ----~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~----~----~~~v~~~~~~p~~~~ 370 (546)
.+.....+ ..+.+.| ++..++..+.++.|.++|+..... ..+... . + ......++|+|+++.
T Consensus 191 ~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 191 RSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR 267 (361)
T ss_dssp ECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred cccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCe
Confidence 01111111 1223345 566677777889999999864321 111110 0 0 111123789999888
Q ss_pred EEEEeC-----------CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcC
Q 009022 371 ILTTSQ-----------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 439 (546)
Q Consensus 371 l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d 439 (546)
++++.. .+.|.+||+.+++.+. ...... +..++|+|+ |+++. +++.
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~-------~i~~~~---p~~ia~spd---------g~~l~---v~n~- 324 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA-------RIPGRD---ALSMTIDQQ---------RNLML---TLDG- 324 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE-------EEECTT---CCEEEEETT---------TTEEE---EECS-
T ss_pred EEEEEccCCCcccccCCCceEEEEECCCCcEEE-------EEecCC---eeEEEECCC---------CCEEE---EeCC-
Confidence 777643 3479999998876422 111222 668999998 55554 3334
Q ss_pred cceEEEECCch--hhhHhhcCCCCCcccceeeecCCCc
Q 009022 440 HPIDFIDITTG--QLVAEVMDPNITTISPVNKLHPRDD 475 (546)
Q Consensus 440 ~~i~iwd~~~~--~~~~~~~~~~~~~i~~v~~~s~~~~ 475 (546)
+.|.|||+.++ +.+.++.... ..-..+ +++|+|+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~-~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAA-EASLQV-QFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSC-SSEEEE-EECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCC-CCcEEE-EecCCCC
Confidence 99999999999 8888764332 233344 7999985
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=3e-14 Score=148.84 Aligned_cols=205 Identities=10% Similarity=0.003 Sum_probs=133.5
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcC-CC----cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCe----
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDK-KG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT---- 238 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~---- 238 (546)
+|...+.+++|||+| ++||.+.. .| .|++||+.+++...... ....+..++|+|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~~wspD-g~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHD-GKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTT-SSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceEEEEeC-CCEEEEEEECCccccc
Confidence 355578899999999 56665543 33 89999999987665432 2223678999999 888888887765
Q ss_pred ------------EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-----CCcEEEEeCCC----
Q 009022 239 ------------VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDART---- 297 (546)
Q Consensus 239 ------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~---- 297 (546)
|++|++.++.....+..... .....+..+.|+|+|++|+.+.. +..|++||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-----DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-----TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccC-----CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988764322211111 00113678999999999988764 56899999976
Q ss_pred --CCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC----CeEEEEECCCCCCCceeeecCCCC--cEEEEEEeCCCC
Q 009022 298 --NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND----HFARIWDIRRLEAGSSLCDLPHKR--VVNSAYFSPSGS 369 (546)
Q Consensus 298 --~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~ 369 (546)
+..... .+..+...+.. .|+| ++..|+..+.. +.|.+||+.+...........+.. .+..++|++++.
T Consensus 273 ~~~~~~~~--~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 273 ITGILKWV--KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SCSSCCCE--EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cCCccceE--EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 322122 22222223433 4777 77766665543 369999997653211111223433 688899998778
Q ss_pred EEEEEeCCCcEE--EEEC
Q 009022 370 KILTTSQDNRLR--IWDS 385 (546)
Q Consensus 370 ~l~s~s~dg~i~--vwd~ 385 (546)
++++...++..+ +|++
T Consensus 349 lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEEEETTEEEEEEEET
T ss_pred EEEEEEECCEEEEEEEEC
Confidence 888888887544 4454
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.8e-14 Score=149.67 Aligned_cols=199 Identities=9% Similarity=0.016 Sum_probs=131.6
Q ss_pred EEEEc--CCCCc-EEEEEcCCCcEEEEeCC--C-CceeEEeccc----CCCceEEEEEecCCCCEEEEEeCC--------
Q 009022 175 CLEFH--PTNNH-ILLSGDKKGQVGVWDFY--K-VSEKIVYGNI----HSCIVNNIRFNPTNDGTVYAASSD-------- 236 (546)
Q Consensus 175 ~l~~~--~~~~~-~l~s~~~d~~i~iwd~~--~-~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-------- 236 (546)
...|+ |+|.. ++++...+..|.+|++. . +. ...+... |...+..++|+|+ ++.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCC
Confidence 55565 99955 44444446677777776 2 33 3333221 6678899999999 8899888876
Q ss_pred --CeEEEEECCC------CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--------CcEEEEeCC-CCC
Q 009022 237 --GTVSCTDLET------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDAR-TNS 299 (546)
Q Consensus 237 --g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~ 299 (546)
..|++|++.+ +.......... ..+..++|+|+|++|+.++.+ ..|++||+. ++.
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSDDAH---------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSCSCS---------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred ceeEEEEEECCCCccccCCceeEEEecCC---------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 54432220111 146778999999999987754 379999998 442
Q ss_pred CCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC--eEEEEECCCCCCCceeeecCC-CCc--------EEEEEEeCCC
Q 009022 300 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH--FARIWDIRRLEAGSSLCDLPH-KRV--------VNSAYFSPSG 368 (546)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~~--------v~~~~~~p~~ 368 (546)
..........+...+..+.|+| ++++++++..++ .|++||+.+... .....+ ... +.+++|+|++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAA---TQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCE---EESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred ccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCce---eecccccccccCccccccCceEeEeCCC
Confidence 1111112223345799999999 888888888888 666666644322 111111 111 5678999999
Q ss_pred CEEEEEeCCCcEEEE--ECCCCC
Q 009022 369 SKILTTSQDNRLRIW--DSIFGN 389 (546)
Q Consensus 369 ~~l~s~s~dg~i~vw--d~~~~~ 389 (546)
.++++++. +.++|| |+.+++
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE
T ss_pred EEEEEEEc-CccEEEEEECCCCc
Confidence 99999998 999999 554443
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=1e-13 Score=130.28 Aligned_cols=271 Identities=7% Similarity=-0.019 Sum_probs=176.4
Q ss_pred CCCcEEEEeCCCCceeEEecc-----cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCc
Q 009022 191 KKGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 265 (546)
Q Consensus 191 ~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (546)
.++.|.+||..+++....+.. ........+.+.. +.++++...++.|.+||..+++.+..+....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~-------- 84 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGFT-------- 84 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECCS--------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCCC--------
Confidence 378999999998765443311 1223467787753 5666666678999999999999888774221
Q ss_pred ccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec---CCCcEEEEEECCCCCCEEEEEe-CCCeEEEEEC
Q 009022 266 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR---KGSKVVGLHCNPIQPELLLSCG-NDHFARIWDI 341 (546)
Q Consensus 266 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~ 341 (546)
.+..+++++++..+++...++.|.+||+.+.+..... .... .......+++ . ++.++++.. .++.|.+||+
T Consensus 85 --~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 85 --SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp --SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred --CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence 3788999888854444448899999999886544322 1111 0013456666 3 555555544 4889999999
Q ss_pred CCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCCCCCCCcceeeccCCcccCCcee
Q 009022 342 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD----------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR 411 (546)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (546)
.+.+....+ ........+.++|+|++++++..+ +.|.+||..++++.. .........+..
T Consensus 160 ~t~~~~~~i---~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-------~~~~~~g~~p~~ 229 (328)
T 3dsm_A 160 ETDKVVDEL---TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-------QFKFKLGDWPSE 229 (328)
T ss_dssp TTTEEEEEE---ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-------EEECCTTCCCEE
T ss_pred CCCeEEEEE---EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-------EEecCCCCCcee
Confidence 865443332 223345678999999977777654 789999998776421 111111124567
Q ss_pred EEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHh-hcCCCCCcccceeeecC-CCcEEEEe----c-CCc
Q 009022 412 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE-VMDPNITTISPVNKLHP-RDDVLASG----S-SRS 484 (546)
Q Consensus 412 ~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~v~~~s~-~~~~l~sg----s-dg~ 484 (546)
++++|+ ++++. ... +.|.+||+.+++.... +..........+ +++| +++++++. . ++.
T Consensus 230 la~~~d---------~~~ly---v~~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi-~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 230 VQLNGT---------RDTLY---WIN--NDIWRMPVEADRVPVRPFLEFRDTKYYGL-TVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp EEECTT---------SCEEE---EES--SSEEEEETTCSSCCSSCSBCCCSSCEEEE-EECTTTCCEEEEECTTSSSEEE
T ss_pred EEEecC---------CCEEE---EEc--cEEEEEECCCCceeeeeeecCCCCceEEE-EEcCCCCeEEEEcccccccCCE
Confidence 889987 33332 111 1899999998876421 111112445566 8999 66777776 5 799
Q ss_pred EEEEcCCCCCccceeecc
Q 009022 485 IFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 485 i~vwd~~~~~~~~~~~~~ 502 (546)
|.+|+.. |+.+.++...
T Consensus 295 V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp EEEECTT-CCEEEEEEEE
T ss_pred EEEECCC-CCEEEEEEec
Confidence 9999998 9988887543
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=3.3e-12 Score=127.75 Aligned_cols=312 Identities=10% Similarity=0.014 Sum_probs=196.0
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCC--CCceeEEecccCCCceEEEEEe----cCCCCEEEEEe-CCCeEEEEE
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFN----PTNDGTVYAAS-SDGTVSCTD 243 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~-~dg~i~iwd 243 (546)
..+..+.|+|+| ++|++++.++.|.+||+. +.+....+.. ......++|+ |+ +++++++. .++.|.++|
T Consensus 197 ~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 197 YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWE-DKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCT-TTEEEEEEEETTEEEEEE
T ss_pred CCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCC-CCEEEEEEccCCeEEEEE
Confidence 356799999999 678888899999999995 6666665532 3346799999 68 77766655 469999999
Q ss_pred CCCCceeeeeecCCCCCCCC--CcccceEEEEecCCCCEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 244 LETGLALSLMNVNPNGWHGP--RTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
..+.+.+..+........+. .....+..+..++++..+++ ....|.|.++|........ . ..........++.|+
T Consensus 273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-v-~~i~~~~~~~d~~~~ 350 (567)
T 1qks_A 273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-T-TEISAERFLHDGGLD 350 (567)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-E-EEEECCSSEEEEEEC
T ss_pred CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-e-eeeeccccccCceEC
Confidence 99999888776532111110 00114677888887665554 4567999999987654221 1 111223357789999
Q ss_pred CCCCCEEEEEe-CCCeEEEEECCCCCCCceeee---cCCCCcEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCCCCCCC
Q 009022 321 PIQPELLLSCG-NDHFARIWDIRRLEAGSSLCD---LPHKRVVNSAYFSPSGS-KILTTS-QDNRLRIWDSIFGNLDSPS 394 (546)
Q Consensus 321 p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~-~l~s~s-~dg~i~vwd~~~~~~~~~~ 394 (546)
| ++++|+++. .++.|.++|+.+.+....+.. .+|.+.-..+ ++|++. .++++. .++.|.++|..+++-....
T Consensus 351 p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 351 G-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp T-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred C-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 9 888776655 678999999987665444433 1354322222 688744 444543 4689999999874321111
Q ss_pred cceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCc----CcceEEEECCch-----h----hh--Hhhc--
Q 009022 395 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA----LHPIDFIDITTG-----Q----LV--AEVM-- 457 (546)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~----d~~i~iwd~~~~-----~----~~--~~~~-- 457 (546)
...+......+ ...+-+..+|+ ++++-....... .++|.|||+.+. . .+ ....
T Consensus 429 ~kvv~~i~~~g-~g~~~i~~~p~---------~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 429 WKILDSFPALG-GGSLFIKTHPN---------SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TSEEEEEECSC-SCCCCEECCTT---------CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CEEEEEEecCC-CCCEEEEeCCC---------CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 11111111111 12234566777 443332212222 468999999877 2 11 1111
Q ss_pred CCCCCcccceeeecCCCcEEEEe--c----CCcEEEEcCCCCCccceeec
Q 009022 458 DPNITTISPVNKLHPRDDVLASG--S----SRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 458 ~~~~~~i~~v~~~s~~~~~l~sg--s----dg~i~vwd~~~~~~~~~~~~ 501 (546)
+.....+..+ .|+|+|+.|..+ + ++.|.|+|..+++++.+++.
T Consensus 499 ~~~~~~~~~~-~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 499 TEGQPRVVQG-EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CSSCCEEEEE-EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCcceEee-eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 1112345555 899999877664 2 59999999999998888874
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=1e-13 Score=144.46 Aligned_cols=202 Identities=9% Similarity=-0.017 Sum_probs=131.4
Q ss_pred ccCCCeEEEEEcCCCCcEEE-----EEcCCCcEEEEeCCCCcee-EEecccCCCceEEEEEecCCCCEEEEEeCCCe---
Q 009022 168 YHSRRVTCLEFHPTNNHILL-----SGDKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT--- 238 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~-----s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--- 238 (546)
+|...+.+++|||+| ++|| .|+.+..|++||+.+++.. .... .......++|+|+ ++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~~~~~~~~wspD-g~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--EGGKYATPKWTPD-SKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--SCCTTCCCEECTT-SSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcCCccc--CcccccceEEecC-CCEEEEEEecCCCCC
Confidence 466689999999999 5666 3444568999999988754 2111 1111268999999 889999888766
Q ss_pred ----------EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC----cEEEEeCCCCCCCcce
Q 009022 239 ----------VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDARTNSRSGEA 304 (546)
Q Consensus 239 ----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~ 304 (546)
|++|++.++.....+..... .....+.++.|+|+|++|++++.++ .|++|+..++.. .
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~- 265 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERT-----GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--R- 265 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCC-----CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--E-
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecC-----CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--E-
Confidence 99999998863222111110 0111478899999999999887665 777776544321 1
Q ss_pred EEeecCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCCceeeecCC--CCcEEEEEEeCCCCEEEEEeCCCc
Q 009022 305 ILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPH--KRVVNSAYFSPSGSKILTTSQDNR 379 (546)
Q Consensus 305 ~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~s~dg~ 379 (546)
.+..+...+....+ + ++.+++.+. .++.|.+||+.+...........+ ...|..++|+ ++.++++...++.
T Consensus 266 -~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 266 -LLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp -EEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred -EeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 22222234555556 4 445444444 257899999976542111122222 4568888888 6778888888998
Q ss_pred EEEEEC
Q 009022 380 LRIWDS 385 (546)
Q Consensus 380 i~vwd~ 385 (546)
.+||.+
T Consensus 342 ~~l~~~ 347 (695)
T 2bkl_A 342 SEVRVA 347 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888865
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=9.7e-14 Score=131.86 Aligned_cols=258 Identities=10% Similarity=0.086 Sum_probs=158.8
Q ss_pred CCeEEEEEcCCCCcEEEEE--------cCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---C--
Q 009022 171 RRVTCLEFHPTNNHILLSG--------DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---G-- 237 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~--------~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g-- 237 (546)
..+..+++ +|.+++++. ..++.|.+|++.++..... ..+..++|+|+ +++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpD-g~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPD-GKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTT-SSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCC-CCEEEEEEeccCCCcc
Confidence 35677777 774433332 1256899999988764332 46788999999 8888877653 2
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC---------------------------CcE
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------------------------GFL 290 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i 290 (546)
.|.+|++.+++........ . +..+.|+|+++.|+.++.+ ..|
T Consensus 86 ~l~~~~~~~g~~~~l~~~~----------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAK----------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEETTTTEEEEEEEES----------E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred eEEEEECCCCceEEEEcCC----------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 4888899887765544321 1 7889999999999888632 579
Q ss_pred EEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC-------eEEEEECCCCCCCceeeecCCCCcEEEEE
Q 009022 291 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-------FARIWDIRRLEAGSSLCDLPHKRVVNSAY 363 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 363 (546)
++|++.++.....+ .. . .+..+.|+| ++ +++++..++ ...||.+.+.. ...+ ..+ ..+..+
T Consensus 155 ~~~d~~~~~~~~~l-~~---~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l--~~~-~~~~~~- 222 (347)
T 2gop_A 155 WIFDTESEEVIEEF-EK---P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM--FEK-VSFYAV- 222 (347)
T ss_dssp EEEETTTTEEEEEE-EE---E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEE--EEE-ESEEEE-
T ss_pred EEEECCCCeEEeee-cC---C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCc-eEEe--ccC-cceeeE-
Confidence 99999876542222 12 2 578899999 88 777776542 33444443222 1122 223 445444
Q ss_pred EeCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCcceeeccCCcccCCcee-EEecCCCCCCceeEEeeeeeecC
Q 009022 364 FSPSGSKILTTSQD--------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENY 434 (546)
Q Consensus 364 ~~p~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~g~~~~~~~ 434 (546)
+|+|++|+.++.+ ..|.+|| +++... +. .... ..... +.|+ + | +++
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~----l~--~~~~--~~~~~~~~~s-d---------g-~~~--- 277 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG----IL--DEVD--RGVGQAKIKD-G---------K-VYF--- 277 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE----SS--TTCC--SEEEEEEEET-T---------E-EEE---
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC--CCceEe----cc--ccCC--cccCCccEEc-C---------c-EEE---
Confidence 9999998887754 3677887 433210 00 0101 11122 5677 5 5 333
Q ss_pred CCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcE-EEEcCC
Q 009022 435 NGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI-FIWRPK 491 (546)
Q Consensus 435 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i-~vwd~~ 491 (546)
++..++.++|| +.+++.. .+..+ ...+..+ +|+| .++++++ ++.. .||.+.
T Consensus 278 ~~~~~~~~~l~-~~~g~~~-~~~~~-~~~v~~~-~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIK-PIAKG-RHWIMGF-DVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEETTEEEEE-EESSSEE-EEECS-SSEEEEE-EESS--SEEEEEECSSSCCEEEEES
T ss_pred EEecCCcEEEE-EcCCceE-EEecC-CCeEEee-eeeC--cEEEEEcCCCChHHheEeC
Confidence 46677889999 7766543 33333 3566666 8999 5666655 5544 677665
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=2.9e-13 Score=123.19 Aligned_cols=188 Identities=10% Similarity=0.047 Sum_probs=142.6
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCC-CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 262 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (546)
++|++++.++.|.+||..+++.+..+. .+. ..+.++.+.|+ +++|+ +.++.|..||. +++.+..+..+..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pd-G~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~---- 76 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKA-GEILF--SYSKGAKMITR-DGRELWNIAAPAG---- 76 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTT-SCEEE--ECBSEEEEECT-TSCEEEEEECCTT----
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCC-CCEEE--eCCCCEEEECC-CCCEEEEEcCCCC----
Confidence 689999999999999998999888874 343 47899999999 88888 44678999999 8988888875321
Q ss_pred CCcccceEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCcceEEee---cCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Q 009022 263 PRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIH---RKGSKVVGLHCNPIQPELLLSCGNDHFARI 338 (546)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 338 (546)
..+.++.+.++|+++++.+. ++.|..++. .++.+....... ........+.+.+ +++++++...++.|..
T Consensus 77 ----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 77 ----CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE 150 (276)
T ss_dssp ----CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred ----ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence 14788899999999999887 788888876 444333221110 0111344567788 8999999999999999
Q ss_pred EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 339 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 339 wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
||.. + +.+..+.....+.++.+.++++++++++.+++|..||..+|+.
T Consensus 151 ~d~~-G---~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 151 IAPN-G---QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ECTT-S---CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ECCC-C---CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 9985 3 3444443334566788889999999998888999999887765
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=5.5e-13 Score=121.68 Aligned_cols=196 Identities=6% Similarity=0.009 Sum_probs=134.0
Q ss_pred CeEEEEEcCCCCcEEE-EEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 172 RVTCLEFHPTNNHILL-SGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
...+|+++++| ++++ +...++.|.+|+..+..... +...+...+.++++.++ +.++++.. ++.|.+|+.......
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEe
Confidence 67899999999 5676 55678899999976544322 21234456789999998 77666655 889999998765432
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.+.... ...+.++++++++.++++...++.|.+|+..+..... ........+.+++++| +++++++.
T Consensus 101 -~~~~~~--------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~-~g~l~v~~ 167 (270)
T 1rwi_B 101 -VLPFDG--------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LPFTGLNDPDGVAVDN-SGNVYVTD 167 (270)
T ss_dssp -ECCCCS--------CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---CCCCSCCSCCCEEECT-TCCEEEEE
T ss_pred -eeecCC--------cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---eccccCCCceeEEEeC-CCCEEEEE
Confidence 221111 1247899999999988777778899999765433211 1112223578899999 88877777
Q ss_pred eCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 331 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 331 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
..++.|.+|+...... ......+...+.+|+++++|.++++...++.|.+|+..
T Consensus 168 ~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp GGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CCCCEEEEEecCCCce--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 7788999999864322 11112333678899999999877777778899999874
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=1.7e-12 Score=119.55 Aligned_cols=204 Identities=12% Similarity=0.103 Sum_probs=142.1
Q ss_pred ccCCCeEEEEE-cCCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 168 YHSRRVTCLEF-HPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 168 ~h~~~V~~l~~-~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
+|...+.++++ .+++ +++++... ++.|++|+ .++.....+...+...+..++++|+ ++++++...++.|.+|+..
T Consensus 74 ~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp TCBSSEEEEEEETTTT-EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT
T ss_pred ccccCceEEEEEcCCC-eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCC
Confidence 35567899999 4677 66666643 78999999 4455555553445567899999998 8888887788999999965
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+..+..+.... ....+.+++++++++++++...++.|++|+.... ... .+........+..++++| +++
T Consensus 151 -g~~~~~~~~~~-------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~-~~~~~g~~~~p~~i~~d~-~G~ 219 (286)
T 1q7f_A 151 -GNVLHKFGCSK-------HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLR-QIGGEGITNYPIGVGINS-NGE 219 (286)
T ss_dssp -SCEEEEEECTT-------TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEE-EESCTTTSCSEEEEEECT-TCC
T ss_pred -CCEEEEeCCCC-------ccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEE-EEccCCccCCCcEEEECC-CCC
Confidence 45554443211 1114789999999998888888999999997532 111 111111124688999999 888
Q ss_pred EEEEEeCCC-eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 326 LLLSCGNDH-FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 326 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
++++...++ .|.+|+... .....+........+.+++++|+|+++++ +.+++|++|++..
T Consensus 220 l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 888887776 999999642 22122222122334789999999987777 5799999999854
No 186
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=1.5e-11 Score=113.90 Aligned_cols=281 Identities=8% Similarity=-0.048 Sum_probs=182.4
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.....+.+|++.++| +++++...++.|.+|+.. +.........+...+..+++.++ +.++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-C
Confidence 345678999999999 677777778899999988 44433222334467899999988 7777777667899999988 5
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
+.. .+..... ...+.++++.+++.++++...++.|..|+.. +... ..........+.++++.+ +++++
T Consensus 93 ~~~-~~~~~~~-------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~~~~~~~~i~~d~-~g~l~ 160 (300)
T 2qc5_A 93 GFT-EYPLPQP-------DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY--EYDLPNKGSYPAFITLGS-DNALW 160 (300)
T ss_dssp CEE-EEECSST-------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECT-TSSEE
T ss_pred CeE-EecCCCC-------CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE--EccCCCCCCCceeEEECC-CCCEE
Confidence 543 2322211 1248899999999988887778899999886 3322 112222334689999999 88877
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
++....+.|..|+. +... ..+........+..+++++++.++++....+.|.+|+. ++.... .... ....
T Consensus 161 v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~----~~~~---~~~~ 230 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE----YDIP---TPNA 230 (300)
T ss_dssp EEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE----EECS---STTC
T ss_pred EEecCCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE----EECC---CCCC
Confidence 77666789999998 3222 11211134456899999999987777766778999998 443211 0000 1122
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc-CCCCCcccceeeecCCCcEEEEecCCcEE
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-DPNITTISPVNKLHPRDDVLASGSSRSIF 486 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~s~~~~~l~sgsdg~i~ 486 (546)
.+..++++++ |.+.+ +...++.|.+|+. +++.. .+. ......+.++ +++++|+++++... .|.
T Consensus 231 ~~~~i~~d~~---------g~l~v---~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i-~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 231 RPHAITAGKN---------SEIWF---TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGI-TFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp CEEEEEECST---------TCEEE---EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCE-EECTTSCEEEECSS-EEE
T ss_pred CceEEEECCC---------CCEEE---eccCCCeEEEECC-CCcEE-EEECCccCCcccee-EeCCCCCEEEEccC-ceE
Confidence 3456777776 33332 2233567888887 44332 221 1122445666 78999987776654 676
Q ss_pred EEcC
Q 009022 487 IWRP 490 (546)
Q Consensus 487 vwd~ 490 (546)
.++.
T Consensus 295 ~~~p 298 (300)
T 2qc5_A 295 KLNL 298 (300)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 6665
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=5.2e-14 Score=136.32 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=129.5
Q ss_pred EEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEE-------------------EEEecCCCCEEEEE-
Q 009022 174 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN-------------------IRFNPTNDGTVYAA- 233 (546)
Q Consensus 174 ~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~- 233 (546)
.++.|+|+| ++|+.++.++.|++|++.+++..... ..+...... +.|+|+ ++.++.+
T Consensus 84 ~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~ 160 (396)
T 3c5m_A 84 FGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAE 160 (396)
T ss_dssp TTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHH
T ss_pred ccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC-Ccceeeee
Confidence 347899999 67888888889999999887655444 333332222 345676 5555543
Q ss_pred ----eCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCC------CcEEEEeCCCCCCCc
Q 009022 234 ----SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNF------GFLYLVDARTNSRSG 302 (546)
Q Consensus 234 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~ 302 (546)
..+..|++||+.+++........ ..+..+.|+| ++..|+..+.+ ..|++|++.......
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~~~----------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQDT----------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEEES----------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred eccCCCcceEEEEECCCCcEEeeccCC----------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 35678999999988765544221 1378899999 78877776543 468899987643211
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeC-CCCEEEEEe-
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTS- 375 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s- 375 (546)
+ ........+..+.|+| +++.|+.++.+ +.|++||+.++... .+... . ... +.|+| +|++|++++
T Consensus 231 -l-~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~--~-~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 231 -I-KEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVM--P-PCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp -S-SCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEEC--C-SEE-EEEECSSSSEEEEEEC
T ss_pred -e-eccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeC--C-CCC-CCccCCCCceEEEecC
Confidence 1 1111123578899999 88877766543 45999999764431 22211 1 233 89999 999888765
Q ss_pred ---------------CCCcEEEEECCCCCC
Q 009022 376 ---------------QDNRLRIWDSIFGNL 390 (546)
Q Consensus 376 ---------------~dg~i~vwd~~~~~~ 390 (546)
.++.|.+||+.+++.
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBC
T ss_pred CcceeeccccccccCCCCcEEEEecccCce
Confidence 347899999987764
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=5.1e-12 Score=120.18 Aligned_cols=294 Identities=12% Similarity=-0.041 Sum_probs=178.1
Q ss_pred EcCCCCcEEEEEcC--CC---cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEEE
Q 009022 178 FHPTNNHILLSGDK--KG---QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCT 242 (546)
Q Consensus 178 ~~~~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iw 242 (546)
..|++ +++++... .. +|.+||..+++....+..+ ..+ .++|+|+ +++|+.+. .++.|.+|
T Consensus 28 ~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEE
Confidence 34666 44554442 22 8899999998877666432 223 9999999 88887775 36789999
Q ss_pred ECCCCceeeeeecC-CCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 243 DLETGLALSLMNVN-PNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
|+.+.+.+..+... ....... .....+.|+|+|++|+++.. ++.|.++| .+++..... .... .++.+
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g---~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~---i~~~---~~~~~ 172 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVG---PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL---LSSP---TCYHI 172 (373)
T ss_pred ECCCCcEEEEEECCCccccccC---CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE---cCCC---ceEEE
Confidence 99998888777654 1110000 12457899999999999874 47899999 877543320 1111 12444
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeee----cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCc
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 395 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 395 (546)
.|.....+++.+.||.+.+++. +.+....... .+.........+.+++..++..+..+.+.+.|+..+..... .
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~-~ 250 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK-A 250 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe-e
Confidence 5534456677778999999999 5544211110 11111123355667655555455788999999875432100 0
Q ss_pred ceee-cc---CCc-ccCCceeEEecCCCCCCceeEEeeeeeecCCC------CcCcceEEEECCchhhhHhhcCCCCCcc
Q 009022 396 EIVH-SH---DFN-RHLTPFRAEWDPKDPSESLAVIGRYISENYNG------AALHPIDFIDITTGQLVAEVMDPNITTI 464 (546)
Q Consensus 396 ~~~~-~~---~~~-~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g------~~d~~i~iwd~~~~~~~~~~~~~~~~~i 464 (546)
.+.. .. ... .......+.++|+.... |++.. .+ ...+.|.++|+.+++.+.++.... ..
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l-------yV~~~-~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p 320 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGI-------YLLTS-EQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DV 320 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEE-------EEEec-cCCcccccCCCCeEEEEECCCCEEEEEEECCC--Cc
Confidence 0000 00 000 00001124455552111 11100 01 124679999999999988886443 35
Q ss_pred cceeeecCCCc-EEEEec--CCcEEEEcCCCCCcccee
Q 009022 465 SPVNKLHPRDD-VLASGS--SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 465 ~~v~~~s~~~~-~l~sgs--dg~i~vwd~~~~~~~~~~ 499 (546)
..+ +|+|+|+ +|+++. ++.|.+||+.+++.+.++
T Consensus 321 ~~i-~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 321 DAI-SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeE-EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 566 8999999 677765 799999999999988883
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=1.4e-11 Score=116.19 Aligned_cols=208 Identities=11% Similarity=0.071 Sum_probs=145.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC----CeE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTV 239 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i 239 (546)
..+..+...+.+++|+|+| ++++++..++.|.+||..++...... ..+...+.+++|+|+ ++++++...+ +.|
T Consensus 38 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-SCEEEEECTTSSSCCEE
T ss_pred EEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-CcEEEEeCCCCCCCceE
Confidence 4566677788999999999 68888888999999999877655443 246678999999999 8877777666 689
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
.+||..++.....+.... ....+..++++|+++++++... .+.|+.++..++... ........
T Consensus 115 ~~~d~~~~~~~~~~~~~~-------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~ 183 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLS-------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQNISV 183 (333)
T ss_dssp EEECTTSCSCEEEECSSS-------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEEESS
T ss_pred EEEeCCCCEEEEEEccCc-------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE----EeecCCCc
Confidence 999998876543332111 1124889999999988776653 356777776543321 11111225
Q ss_pred EEEEEECCCCCCEE-EEEeCCCeEEEEECCCC-CCCcee-----eecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 314 VVGLHCNPIQPELL-LSCGNDHFARIWDIRRL-EAGSSL-----CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 314 i~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
+..++|+| +++.| ++.+.++.|++|++.+. .....+ ........+..++++++|+++++...++.|.+||..
T Consensus 184 ~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 184 ANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 78999999 88755 45556789999998642 211111 111111467889999999988888778999999984
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=3e-12 Score=120.13 Aligned_cols=249 Identities=8% Similarity=-0.037 Sum_probs=166.9
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
....+.+.. + +++++...++.|.+||..+.+....+. .......++++++ +.++++...++.|.+||+.+++...
T Consensus 45 ~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEE
Confidence 456777753 3 677777778999999999988877763 4467889999998 6555555478999999999998887
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
.+...... + .......+++ ++..++++. .++.|.+||+.+++..... . .......+.++| +++++++
T Consensus 120 ~i~~g~~~--~--~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~---~g~~p~~i~~~~-dG~l~v~ 188 (328)
T 3dsm_A 120 YIECPDMD--M--ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL-T---IGIQPTSLVMDK-YNKMWTI 188 (328)
T ss_dssp EEECTTCC--T--TTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE-E---CSSCBCCCEECT-TSEEEEE
T ss_pred EEEcCCcc--c--cCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE-E---cCCCccceEEcC-CCCEEEE
Confidence 76654310 0 0012445666 345555554 4889999999987654322 1 122456888999 8887777
Q ss_pred EeCC----------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceee
Q 009022 330 CGND----------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 399 (546)
Q Consensus 330 ~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 399 (546)
+..+ +.|.+||..+.+....+. .+.......++|+|++++|+++.. .|.+||+.++++... ....
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~ 263 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR--PFLE 263 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS--CSBC
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee--eeec
Confidence 6554 789999997654322222 222346889999999998888765 899999988876321 1111
Q ss_pred ccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCC----CcCcceEEEECCchhhhHhhc
Q 009022 400 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG----AALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g----~~d~~i~iwd~~~~~~~~~~~ 457 (546)
. ....+..++++|.. +.+.+ +. ..++.|.+||.. |+.+.++.
T Consensus 264 ~----~~~~p~gi~vdp~~--------g~lyv---a~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 264 F----RDTKYYGLTVNPNN--------GEVYV---ADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp C----CSSCEEEEEECTTT--------CCEEE---EECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred C----CCCceEEEEEcCCC--------CeEEE---EcccccccCCEEEEECCC-CCEEEEEE
Confidence 0 12345678888854 33333 22 456889999987 87776664
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=5.2e-12 Score=118.32 Aligned_cols=304 Identities=12% Similarity=0.037 Sum_probs=184.8
Q ss_pred EEEcCCCCcEEEEEcC----CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEE
Q 009022 176 LEFHPTNNHILLSGDK----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSC 241 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~i 241 (546)
....|++.+++++-.. ++.|.+.|..+.+.+..+..+.. + . ++++|+ +++++++. .++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC-CCEEEEEcccccccccCCCCCEEEE
Confidence 3456888544444332 67999999999988877743333 3 4 999999 77776654 3678999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 319 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (546)
||..+.+.+..+....... .........+.|+|+|++++++.. ++.|.++|+.+.+....+ ... .+ ..+
T Consensus 114 iD~~t~~v~~~I~v~~g~r--~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~----g~--~~~ 184 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPR--FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVP----DC--YHI 184 (386)
T ss_dssp ECTTTCCEEEEEEETTCCC--CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECC----SE--EEE
T ss_pred EECCCCeEEEEEECCCccc--cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECC----Cc--cee
Confidence 9999999988886643100 000012557899999999998864 689999999997765433 111 11 122
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCC-CCCCcee-eec-CCCCcE-EEEEEe-CCCCEEEEEeCCCcEEEEECCCCCC--CC
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRR-LEAGSSL-CDL-PHKRVV-NSAYFS-PSGSKILTTSQDNRLRIWDSIFGNL--DS 392 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~-~~~~~v-~~~~~~-p~~~~l~s~s~dg~i~vwd~~~~~~--~~ 392 (546)
.|...+.+++.+.||.+.+.++.. .+..... ..+ ....++ ....|. ++|++++ .+.+|.|.+.|+.+... ..
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 342456777888899998888865 2321100 001 111222 224665 5776555 45689999999976542 11
Q ss_pred CCcceeec----cCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCC---cCcceEEEECCchhhhHhhcCCCCCccc
Q 009022 393 PSREIVHS----HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDITTGQLVAEVMDPNITTIS 465 (546)
Q Consensus 393 ~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 465 (546)
+.. +... ..+.. .....++++|......+.. +.- .-++ ..+.|.++|+.+++.+..+.... ...
T Consensus 264 ~~~-~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~-~~~----~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~ 334 (386)
T 3sjl_D 264 AVE-ALTEAERADGWRP-GGWQQVAYHRALDRIYLLV-DQR----DEWRHKTASRFVVVLDAKTGERLAKFEMGH--EID 334 (386)
T ss_dssp CEE-SSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEE-EEC----CTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EEC
T ss_pred cee-ccccccccccccC-CCcceeeECCCCCeEEEEe-ccc----cccccCCCCCEEEEEECCCCeEEEEEECCC--Ccc
Confidence 100 0000 00000 0001234455421111111 100 0011 23679999999999998886543 455
Q ss_pred ceeeecCCCc-EEEEe-c-CCcEEEEcCCCCCccceeeccc
Q 009022 466 PVNKLHPRDD-VLASG-S-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 466 ~v~~~s~~~~-~l~sg-s-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
.+ +++++++ +|+++ . ++.|.++|..+++.+.++....
T Consensus 335 ~l-avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 335 SI-NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EE-EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred eE-EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 66 8999996 66664 4 8999999999999998887654
No 192
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=1.2e-11 Score=116.26 Aligned_cols=215 Identities=12% Similarity=0.095 Sum_probs=148.4
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-eeEEec--------ccCCCceEEEEEecCCCCEEEEEe-CCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG--------NIHSCIVNNIRFNPTNDGTVYAAS-SDG 237 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~-~dg 237 (546)
++......|+++|+| +++++...++.|++|+..... .+..+. ..+......|+|+|+++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 455678999999999 688888889999999987553 333332 234456899999994388888886 689
Q ss_pred eEEEEECCCCceeeeeecCCCC-CCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 238 TVSCTDLETGLALSLMNVNPNG-WHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
.|++|+ ..+..+..+...... .........+..|+++|+ +.++++...++.|++|+..+++....+ ........+.
T Consensus 167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-~~~~~~~~~~ 244 (329)
T 3fvz_A 167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-KHASFGRNVF 244 (329)
T ss_dssp EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CCTTTTTCEE
T ss_pred eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-eccccCCCcc
Confidence 999999 456666555322110 000112234789999998 677777778899999999866543322 2233445788
Q ss_pred EEEECCCCCCEEEEEe-------CCCeEEEEECCCCCCCceeee-cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 316 GLHCNPIQPELLLSCG-------NDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.++++| +..+++.+ .+..|++|++.+++....+.. .++...+..|+++|+|.++++...++.|++|++..
T Consensus 245 ~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 245 AISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 899988 33333332 345899999876543222211 14666789999999998888888899999999853
No 193
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=2.7e-12 Score=122.54 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=182.0
Q ss_pred CCCCcEEEEEcCC----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEEEECC
Q 009022 180 PTNNHILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLE 245 (546)
Q Consensus 180 ~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~ 245 (546)
+++.+++++...+ +.|.++|..+.+.+..+..+. .+ .+.++|+ +++|+.+. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3553444444433 799999999998888875433 34 8999999 77666665 36789999999
Q ss_pred CCceeeeeecC-CCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 246 TGLALSLMNVN-PNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
+.+.+..+... ...+.. ......+.|+|++++++++.. ++.|.++|+.+.+....+ ... .. ....|.
T Consensus 158 t~~vv~~I~v~g~~r~~~---g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I-~v~----g~--~~~~p~ 227 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLV---GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML-DVP----DC--YHIFPA 227 (426)
T ss_dssp TCCEEEEEEETTCCCCCB---SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECC----SE--EEEEEE
T ss_pred CCcEEEEEECCCcccccc---CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE-EcC----Cc--eeeccC
Confidence 99998887664 111000 012456889999999999864 578999999997765432 111 11 223332
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCce---eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCC-ccee
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSS---LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS-REIV 398 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~ 398 (546)
....+++.+.||.+.+.++.+.+.... ....+.......+.|.+++..++..+..+.|.+.|+..+...... ..+.
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 335666667788888888743322110 001111111224578888888877788899999998654321000 0000
Q ss_pred eccCCcc---cCCceeEEecCCCCCCceeEEeeeeeecCCCC---cCcceEEEECCchhhhHhhcCCCCCcccceeeecC
Q 009022 399 HSHDFNR---HLTPFRAEWDPKDPSESLAVIGRYISENYNGA---ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 472 (546)
Q Consensus 399 ~~~~~~~---~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~ 472 (546)
....... ......+.++|+.....+.. ... ..++ ..+.|.++|+.+++.+.++.... ....+ +|+|
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~-~~~----~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gi-a~sp 379 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLV-DQR----DEWKHKAASRFVVVLNAETGERINKIELGH--EIDSI-NVSQ 379 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEE-EEC----CTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEE-EECC
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEe-ccc----ccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeE-EEcc
Confidence 0000000 00001245666521111111 000 0111 24679999999999998886442 34556 8999
Q ss_pred CCc-EEEEec--CCcEEEEcCCCCCcccee
Q 009022 473 RDD-VLASGS--SRSIFIWRPKEKSELVEQ 499 (546)
Q Consensus 473 ~~~-~l~sgs--dg~i~vwd~~~~~~~~~~ 499 (546)
+|+ +|+++. ++.|.|+|+.+++.++++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999 777765 799999999999999886
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=4.1e-12 Score=133.28 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=161.8
Q ss_pred cCCCCcEEEEEcCCC--cEEEEeCC-----CCceeEE-----ecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEE
Q 009022 179 HPTNNHILLSGDKKG--QVGVWDFY-----KVSEKIV-----YGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSC 241 (546)
Q Consensus 179 ~~~~~~~l~s~~~d~--~i~iwd~~-----~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~i 241 (546)
+|+|..++.+....+ .-.||-.. .+..... +..+|...+..++|+|+ +++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT-SSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEE
Confidence 488854444443333 35555443 3332222 11234447889999999 8888776543 36999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCc--------------EEEEeCCCCCCCcceEEe
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF--------------LYLVDARTNSRSGEAILI 307 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~~~~~~~~ 307 (546)
||+.+++.+... ... ..+..++|+|+ +.|+.+..++. |++|++.++......+..
T Consensus 194 ~dl~tg~~~~~~-~~~---------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 194 VGVADGKPLADE-LKW---------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EETTTCCEEEEE-EEE---------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EECCCCCCCCcc-CCC---------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 999999875431 110 01357889999 99988876554 899999776532222211
Q ss_pred -ecCCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCC--CCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC--
Q 009022 308 -HRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRL--EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-- 377 (546)
Q Consensus 308 -~~~~~~i~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-- 377 (546)
..+...+..+.|+| ++++|+..+.++ .|++||+.++ .....+ ..+...+.... +|++..|+..+.+
T Consensus 263 ~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~~~~-~~dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 263 TPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--IPDLKAQWDFV-DGVGDQLWFVSGDGA 338 (741)
T ss_dssp CTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE--ECSSSSCEEEE-EEETTEEEEEECTTC
T ss_pred cCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe--cCCCCceEEEE-eccCCEEEEEECCCC
Confidence 12223588999999 999888776543 8999999764 201222 23444444443 4888888877764
Q ss_pred --CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECC-chhhhH
Q 009022 378 --NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVA 454 (546)
Q Consensus 378 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~-~~~~~~ 454 (546)
+.|.+|++.++. .....++... ... ...+.|. .+.+++ +...++..+||.+. ++..+.
T Consensus 339 ~~~~l~~~d~~~~~--~~~~~l~~~~--~~~--l~~~~~~----------~~~lv~---~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 339 PLKKIVRVDLSGST--PRFDTVVPES--KDN--LESVGIA----------GNRLFA---SYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TTCEEEEEECSSSS--CEEEEEECCC--SSE--EEEEEEE----------BTEEEE---EEEETTEEEEEEEETTSCEEE
T ss_pred CCCEEEEEeCCCCc--cccEEEecCC--CCe--EEEEEEE----------CCEEEE---EEEECCEEEEEEEeCCCCcee
Confidence 459999987642 0001111110 000 0122332 133333 44556655555443 455555
Q ss_pred hhcCCCCCcccceeeecCCCcEEEE----ec-CCcEEEEcCCCCC
Q 009022 455 EVMDPNITTISPVNKLHPRDDVLAS----GS-SRSIFIWRPKEKS 494 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~~l~s----gs-dg~i~vwd~~~~~ 494 (546)
.+..+....+..+ +++|++..|+. .. .++|++||+.+++
T Consensus 400 ~l~~~~~~~v~~~-~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 400 AVSLPGIGSASGL-SGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ECBCSSSCEEEEE-ECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eccCCCCeEEEEe-ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5554444555555 88999876652 22 4899999998875
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.44 E-value=2.9e-11 Score=126.33 Aligned_cols=161 Identities=10% Similarity=-0.024 Sum_probs=108.1
Q ss_pred CCCceEEEEEecCCCCEEEEEeCCC-----eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC
Q 009022 213 HSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 287 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 287 (546)
|...+..++|+|+ +++|+.+..++ .|++||+.+++........ ..+..++|+|||+.|+.+..+
T Consensus 123 ~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----------~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 123 GTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------VKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp SCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------ECSCCEEECTTSSEEEEEECC
T ss_pred CCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----------cccceEEEEeCCCEEEEEEEC
Confidence 4456889999999 88887765533 8999999999876532111 025678999999999999877
Q ss_pred Cc----------------EEEEeCCCCCCCcceEE-eecCCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEECCC--
Q 009022 288 GF----------------LYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNPIQPELLLSCGN-----DHFARIWDIRR-- 343 (546)
Q Consensus 288 g~----------------i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg~i~iwd~~~-- 343 (546)
+. |++|++.++......+. ...+...+..+.|+| ++++|+.++. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccc
Confidence 66 99999987653222211 122334578999999 9998887764 56899999975
Q ss_pred ----CCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC----cEEEEECCC
Q 009022 344 ----LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN----RLRIWDSIF 387 (546)
Q Consensus 344 ----~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg----~i~vwd~~~ 387 (546)
+.. .......+...+.. .|+|+|..|+..+..+ .|.+||+.+
T Consensus 271 ~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 271 NGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp SSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred cccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 221 11122234444544 4788888777665432 366666543
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=1.2e-11 Score=117.41 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=123.0
Q ss_pred CCeEEEEEcCCCCcEEEEEcCC---C--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---------
Q 009022 171 RRVTCLEFHPTNNHILLSGDKK---G--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--------- 236 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------- 236 (546)
..+.+++|+|+| ++|+.++.+ + .|.+|++.+++...... +.. +..++|+|+ ++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNED-SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTT-SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCC-CCEEEEEEccCCCcCCcEE
Confidence 468899999999 566665543 2 48888888776554442 233 999999999 8888777632
Q ss_pred ------------------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC---------c
Q 009022 237 ------------------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---------F 289 (546)
Q Consensus 237 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~ 289 (546)
..|++|++.+++.+..+.. . .+..+.|+|++ +++++..++ .
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~----------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~ 201 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P----------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWD 201 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E----------TTCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C----------CcccccCCCCe-EEEEEeccccccccccccc
Confidence 5799999998876344432 1 26788999999 777775442 4
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC--------CeEEEEECCCCCCCceeeec-CCCCcEE
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIRRLEAGSSLCDL-PHKRVVN 360 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~-~~~~~v~ 360 (546)
|++++ ++. .. ....+ ..+..+ +| +++.|+.++.+ ..|++|| +.. ..... .+...+.
T Consensus 202 l~~~d--~~~-~~---~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~ 266 (347)
T 2gop_A 202 IYIWE--DGK-EE---KMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVG 266 (347)
T ss_dssp EEEEE--TTE-EE---EEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEE
T ss_pred EEEeC--CCc-eE---EeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccC
Confidence 55555 332 11 11112 345554 88 88888777644 3688888 222 22222 4567788
Q ss_pred E-EEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 361 S-AYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 361 ~-~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
. +.|+ ++ ++++++.++.++|| +.++
T Consensus 267 ~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 267 QAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred CccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 6 9999 88 88999999999999 8744
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=2.1e-10 Score=106.05 Aligned_cols=244 Identities=9% Similarity=0.009 Sum_probs=160.6
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
.+...+.++++.++ +.++++...++.|.+|+.. +.... +..... ...+.++++++++.++++...++.|.
T Consensus 12 ~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~-------~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 12 NQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITE-YPLPTP-------DAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp SSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEE-EECSST-------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEE-ecCCcc-------cCceeeEEECCCCCEEEeCCCCCeEE
Confidence 34567899999998 8777776667899999988 55432 222111 12488999999999888877788999
Q ss_pred EEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEE
Q 009022 292 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 371 (546)
.|+.. +.. ...........+.++++.| ++.++++...++.|.+||. +... ..+........+..+++.+++.++
T Consensus 82 ~~~~~-g~~--~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 82 RITKK-GII--KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp EECTT-SCE--EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTSCEE
T ss_pred EECCC-CcE--EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcCCCCEE
Confidence 99976 221 1112222344789999999 8888887777889999998 3222 122111345578999999999888
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 372 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 372 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
++...++.|.+||. +++... .... .....+..++++++ |.+.+ +....+.|.+|+. +++
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~----~~~~---~~~~~~~~i~~~~~---------g~l~v---~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE----FKIP---TPASGPVGITKGND---------DALWF---VEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE----EECS---STTCCEEEEEECTT---------SSEEE---EETTTTEEEEECT-TCC
T ss_pred EEeCCCCEEEEEcC-CCcEEE----eeCC---CCCCcceeEEECCC---------CCEEE---EccCCceEEEECC-CCc
Confidence 87777789999998 554311 0000 11223446677776 33333 2334567899998 665
Q ss_pred hhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCC
Q 009022 452 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 494 (546)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~ 494 (546)
............+..+ +++++|+++++.. ++.|.+|+. ++.
T Consensus 215 ~~~~~~~~~~~~~~~i-~~~~~g~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAI-TAGAGIDLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp EEEEECSSTTCCEEEE-EECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred EEEEECCCCCCCceeE-EECCCCCEEEeccCCceEEEECC-CCc
Confidence 3321111122455666 8999999888775 799999998 443
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=9.9e-11 Score=109.21 Aligned_cols=208 Identities=10% Similarity=0.078 Sum_probs=134.9
Q ss_pred cccCCCeEEEEEcCCCCcEEEE-------EcCCCcEEEEeCCCCceeEEec---ccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 167 RYHSRRVTCLEFHPTNNHILLS-------GDKKGQVGVWDFYKVSEKIVYG---NIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 167 ~~h~~~V~~l~~~~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
...-....+++|+++| +++++ +..++.|.+|+..+++...... .++...+.+++++++ +..|+.++..
T Consensus 14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~-~g~l~v~~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD-ANQLFVADMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS-SSEEEEEETT
T ss_pred hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC-CCcEEEEECC
Confidence 3344467899999998 67777 5667899999987766543321 124467899999987 3555555555
Q ss_pred CeEEEEECCCCceeee-eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC---------------CcEEEEeCCCCCC
Q 009022 237 GTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------------GFLYLVDARTNSR 300 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~ 300 (546)
+.|.+|+.. ++.... ..... ......+.+++++++++++++...+ +.|+.|+.. +..
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSE-----GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTT-----SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CCEEEEeCC-CCEEEEEeccCC-----CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 579999998 665433 22110 0111247899999999888777654 567777765 322
Q ss_pred CcceEEeecCCCcEEEEEEC----CCCCCEEE-EEeCCCeEEEEECC-CCCCC--ceeeec-CCC-CcEEEEEEeCCCCE
Q 009022 301 SGEAILIHRKGSKVVGLHCN----PIQPELLL-SCGNDHFARIWDIR-RLEAG--SSLCDL-PHK-RVVNSAYFSPSGSK 370 (546)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~----p~~~~~l~-~~~~dg~i~iwd~~-~~~~~--~~~~~~-~~~-~~v~~~~~~p~~~~ 370 (546)
. ...........++++ | +++.|+ +...++.|.+|++. ..... ..+..+ .+. ..+..++++++|++
T Consensus 165 ~----~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 165 I----QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp E----EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred E----EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 1 111112246889999 8 775554 44567899999975 21110 122222 232 56788999999998
Q ss_pred EEEEeCCCcEEEEECCCC
Q 009022 371 ILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 371 l~s~s~dg~i~vwd~~~~ 388 (546)
+++...++.|.+||..++
T Consensus 240 ~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEEETTTEEEEECTTCB
T ss_pred EEEEcCCCEEEEEcCCCC
Confidence 888777888999987544
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.41 E-value=4.7e-11 Score=108.77 Aligned_cols=201 Identities=7% Similarity=-0.013 Sum_probs=142.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
...+.+|+++++| +++++.. ++.|.+|+....... .+.......+..+++.|+ +.++++...++.|.+|+..+...
T Consensus 66 ~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 66 LYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSC
T ss_pred cCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCcee
Confidence 3467789999998 5666666 889999998765432 222223357899999998 78777777788999997655433
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
...... ....+.+++++++++++++...++.|.+|+........ ........+.++++.+ ++.++++
T Consensus 142 ~~~~~~---------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~-~g~l~v~ 208 (270)
T 1rwi_B 142 TVLPFT---------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDE-AGTVYVT 208 (270)
T ss_dssp EECCCC---------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECT-TCCEEEE
T ss_pred Eeeccc---------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECC-CCCEEEE
Confidence 221110 01136789999999977777778899999987654221 1111224688999999 7887777
Q ss_pred EeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 330 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 330 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
...++.|.+|+...... ......+...+.+++++|+|+++++...++.|++|++...+
T Consensus 209 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ETTTSCEEEECTTCSCC--EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCcEEEEcCCCCcc--eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 77788999999864322 11112334568999999999988888899999999986543
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=2.7e-12 Score=120.84 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc----------eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 241 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 241 (546)
.++.|++++.. .+|++|+.+ .++||++.... ..... ..+.. |+.|+| + +.+|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d-~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--H-GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--E-TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--C-CCEEEEE-cCCcEEE
Confidence 68899999998 688988887 57779875433 11112 23566 999999 5 8899998 7899999
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
||+.+............ .+.++.+.+. .+++++.+|.|.+||+..+... .. ...|++++|+|
T Consensus 111 ~dv~sl~~~~~~~~~~~---------~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~~---~~~Vs~v~WSp 172 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEK---------PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----QL---AQNVTSFDVTN 172 (388)
T ss_dssp EESSSTTCEEEEEECSS---------CEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----EE---EESEEEEEECS
T ss_pred EEchhhhccCccceeec---------ceeeEEecCC--CEEEEECCCCEEEEEccCCccc----cc---cCCceEEEEcC
Confidence 99987665444433322 3666666554 3888999999999999976542 11 22799999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCC--Cceeee-------cCCCCcEEEEEEeCCCCEEEEEe
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEA--GSSLCD-------LPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-------~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
++ ++.|..||.+++|+...... ...+.. .+|...|.+|.|.+++.++++-.
T Consensus 173 -kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 -SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 77 77888999999998764332 112210 13678899999999998888643
No 201
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=1.2e-10 Score=107.68 Aligned_cols=204 Identities=9% Similarity=0.024 Sum_probs=136.8
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc---cCCCceEEEEEecCCCCEEEEE----e--
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN---IHSCIVNNIRFNPTNDGTVYAA----S-- 234 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~----~-- 234 (546)
..+..+...+.+|+|+|+| +++++...++.|.+|+..++........ .....+..++++|+ ++++++. +
T Consensus 62 ~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~ 139 (296)
T 3e5z_A 62 SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDK 139 (296)
T ss_dssp EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHC
T ss_pred EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCcccccc
Confidence 3455577789999999999 6777777778999999977665433211 11235678999998 8888873 2
Q ss_pred -----------CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC-CCCC-C
Q 009022 235 -----------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR-TNSR-S 301 (546)
Q Consensus 235 -----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~ 301 (546)
..+.|..++.. +.... +.... .....++|+|+++.+++.+.++.|++|++. .+.. .
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~---------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~ 208 (296)
T 3e5z_A 140 PEEGYGGEMELPGRWVFRLAPD-GTLSA-PIRDR---------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY 208 (296)
T ss_dssp GGGSSCCCCCSSSCEEEEECTT-SCEEE-EECCC---------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE
T ss_pred ccccccccccCCCcEEEEECCC-CCEEE-eecCC---------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC
Confidence 13456666655 44322 21111 136889999999999777788999999987 3332 1
Q ss_pred cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEE-eCCCCEEEEEeCCCc
Q 009022 302 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYF-SPSGSKILTTSQDNR 379 (546)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~-~p~~~~l~s~s~dg~ 379 (546)
... ........+.++++++ +++++++. ++.|.+|+.. ...+..+ .+.. +++++| .|+++.|++++.+ .
T Consensus 209 ~~~-~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~----g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~ 278 (296)
T 3e5z_A 209 QGV-HFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD----GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-E 278 (296)
T ss_dssp EEE-EECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT----SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-E
T ss_pred CCe-EeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC----CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-e
Confidence 111 1122334567899999 88866665 7899999985 2233333 3444 889999 5899988888765 4
Q ss_pred EEEEECCCCCC
Q 009022 380 LRIWDSIFGNL 390 (546)
Q Consensus 380 i~vwd~~~~~~ 390 (546)
+..++..+.++
T Consensus 279 l~~~~~~~~~~ 289 (296)
T 3e5z_A 279 FWSIETNVRGL 289 (296)
T ss_dssp EEEEECSCCBC
T ss_pred EEEEEcccccc
Confidence 66667766554
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=3.7e-10 Score=109.00 Aligned_cols=204 Identities=11% Similarity=-0.038 Sum_probs=138.7
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCc
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGL 248 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 248 (546)
.....|+|++++ +++++...++.|++||..++....... . ..... ++|+|+ ++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~-~-~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHP-G-FKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEE-T-CCBCB-CEECTT-SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeec-c-CCCCc-eeEecC-CCcEEEEecCCCceEEEEEcCCCc
Confidence 468899999999 688888888999999998776655542 2 22233 999999 88888888765 79999987665
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE---eecCCCc--EEEEEECCCC
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL---IHRKGSK--VVGLHCNPIQ 323 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~--i~~~~~~p~~ 323 (546)
....+..... .....+.+++++|++..|+++..++.|+.||..+.... ... ....... ...++|+|.+
T Consensus 206 ~~~~~g~~~~-----~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~--~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 206 APTRIGQLGS-----TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT--LIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp CEEEEEECCT-----TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--EEEECCCCSCCCCSSCCEEEEETTT
T ss_pred eeEEeeeccc-----hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--EEecccccCCCCCCccccEEEeCCC
Confidence 4333311000 00123678999996666666778889999999865421 110 1111111 2389999944
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeecCC---------------CCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---------------KRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 387 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~ 387 (546)
+.++++-...+.|+.|+.... .....++ -.....++++|+|+++++-+ .+++|+.|++.+
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 666666677889999987532 1111122 23478999999999888877 889999999876
Q ss_pred CCC
Q 009022 388 GNL 390 (546)
Q Consensus 388 ~~~ 390 (546)
+.+
T Consensus 355 G~v 357 (409)
T 3hrp_A 355 GYV 357 (409)
T ss_dssp TEE
T ss_pred CEE
Confidence 653
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=8.1e-11 Score=123.45 Aligned_cols=253 Identities=8% Similarity=-0.072 Sum_probs=149.3
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcC-C----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-----
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDK-K----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG----- 237 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----- 237 (546)
+|...+..++|||+| ++||.+.. . ..|++||+.+++...... +...+..++|+|+ +.|+.++.++
T Consensus 160 ~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD--~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN--DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT--SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC--CEEEEEEecCccccc
Confidence 344578899999999 55655543 2 369999999987654321 2223467899998 4555555543
Q ss_pred ---------eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCC-c
Q 009022 238 ---------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRS-G 302 (546)
Q Consensus 238 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~-~ 302 (546)
.|++|++.++.....+..... .....+..+.|+|+|++|+....++ .|++||+.++... .
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATP-----ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCT-----TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccC-----CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 389999987763222211111 0111377899999999998877543 8999999875211 1
Q ss_pred ceEEeecCCCcEEEEEECCCCCCEEEEEeC----CCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 303 EAILIHRKGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
. .+..+...+.... +| ++..|+..+. .+.|.+||+.+.. ....... .+...+..+.|+ ++.++++...+
T Consensus 310 ~--~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 310 T--ALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp E--EEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred E--EecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 1 2222222334443 37 7787777765 3459999987542 1112222 344456678887 66778888889
Q ss_pred CcEEEEECC-CCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchh
Q 009022 378 NRLRIWDSI-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 451 (546)
Q Consensus 378 g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~ 451 (546)
+..+||.+. .+.. .....+........+.++|+.....+... +....++|++||+.+++
T Consensus 384 g~~~l~~~~~~g~~-------~~~l~~~~~~~v~~~~~s~d~~~l~~~~s--------s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 384 AKSQVLAFDLDGKP-------AGAVSLPGIGSASGLSGRPGDRHAYLSFS--------SFTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTSCE-------EEECBCSSSCEEEEEECCBTCSCEEEEEE--------ETTEEEEEEEEETTTTE
T ss_pred CEEEEEEEeCCCCc-------eeeccCCCCeEEEEeecCCCCCEEEEEEc--------CCCCCCEEEEEECCCCc
Confidence 987777654 2221 11111111222235677776322222221 34566889999998876
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=2.1e-10 Score=119.12 Aligned_cols=204 Identities=13% Similarity=0.076 Sum_probs=125.0
Q ss_pred ccCCCeEEEEEcCCCCcEEE-EE----cCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-----
Q 009022 168 YHSRRVTCLEFHPTNNHILL-SG----DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG----- 237 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~-s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----- 237 (546)
+|...+..++|||+| ++|| +. +....|+|||+.+++...... +......++|+ + ++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-G-NEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-T-TTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-C-CCEEEEEEecCccccc
Confidence 355678899999999 4555 33 333579999999987654322 21123578899 8 88888887764
Q ss_pred --------eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC----CCcEEEEeCCCCCCCcceE
Q 009022 238 --------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN----FGFLYLVDARTNSRSGEAI 305 (546)
Q Consensus 238 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~ 305 (546)
.|++|++.++............ .....+.++.|+|++++|+.... ...|+++|+.++......
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~- 275 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIP----AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT- 275 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSG----GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE-
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCC----CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE-
Confidence 3999999877542222111110 00113678899999998876542 358999999876432222
Q ss_pred EeecCCCcEEEEEECCCCCC-EEEEEeCC---CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC---
Q 009022 306 LIHRKGSKVVGLHCNPIQPE-LLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--- 378 (546)
Q Consensus 306 ~~~~~~~~i~~~~~~p~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg--- 378 (546)
+..+....... +++ ++. +++....+ +.|.++++.+..........++...+. .|++++++|+....++
T Consensus 276 -l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 276 -VQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp -EECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred -EeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 22222233443 555 444 44444433 679999997654311112234555554 8889888887766543
Q ss_pred cEEEEECC
Q 009022 379 RLRIWDSI 386 (546)
Q Consensus 379 ~i~vwd~~ 386 (546)
.|++|++.
T Consensus 351 ~l~~~d~~ 358 (693)
T 3iuj_A 351 RVEQFDYE 358 (693)
T ss_dssp EEEEECTT
T ss_pred EEEEEECC
Confidence 57777765
No 205
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=4.2e-10 Score=116.00 Aligned_cols=302 Identities=15% Similarity=0.111 Sum_probs=178.7
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC---------ce-EEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.|++++.++.|.-+|..+++.+..+...... .+ ..+... +..|++++.|+.|..+|..+|+.+..+.
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 5667777889999999999988877422110 01 122332 5688889999999999999999988776
Q ss_pred cC-CCCCCCCCcccceEEEEecC--CCCEEEEEe------CCCcEEEEeCCCCCCCcceEEee-----------------
Q 009022 255 VN-PNGWHGPRTWRMLYGMDINP--EKGVVLVAD------NFGFLYLVDARTNSRSGEAILIH----------------- 308 (546)
Q Consensus 255 ~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~----------------- 308 (546)
.. .... . ..+..+| .+..++++. .+|.|+.||..+++.........
T Consensus 149 ~~~~~~~-~-------~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 220 (689)
T 1yiq_A 149 TRADHKR-S-------YTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK 220 (689)
T ss_dssp CCSCTTS-C-------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred CcCCCCC-C-------ccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence 53 1110 0 0000111 133444443 36899999999987654332110
Q ss_pred -----------cCCCcEEEEEECCCCCCEEEEEeCCCe-------------------EEEEECCCCCCCceeeecCCC--
Q 009022 309 -----------RKGSKVVGLHCNPIQPELLLSCGNDHF-------------------ARIWDIRRLEAGSSLCDLPHK-- 356 (546)
Q Consensus 309 -----------~~~~~i~~~~~~p~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-- 356 (546)
........+++.| ...+++.+..++. |..||..+++..-.+....|.
T Consensus 221 ~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 221 TWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW 299 (689)
T ss_dssp TCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence 0001112577888 7788888887764 999999876653222221221
Q ss_pred -----CcEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCCCCCCCccee----e-------------------------
Q 009022 357 -----RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIV----H------------------------- 399 (546)
Q Consensus 357 -----~~v~~~~~~p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~------------------------- 399 (546)
..+.......+|+ .|+.++.+|.++++|..+|+++....... .
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 1222223333565 78899999999999999998752110000 0
Q ss_pred --ccCCcccCCceeEEecCCCCCCceeEEeeeee--e--------------cCCCC------------------cCcceE
Q 009022 400 --SHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS--E--------------NYNGA------------------ALHPID 443 (546)
Q Consensus 400 --~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~--~--------------~~~g~------------------~d~~i~ 443 (546)
.....+...--.++++|......+.. ..... . .+.|. .++.|.
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPA-HIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEE-EECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEec-cccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 00000000001245666532111111 11000 0 00111 248899
Q ss_pred EEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeecc
Q 009022 444 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 502 (546)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~ 502 (546)
.||+.||+.+.++..+. . ...- .+...+.+|++|+ ||.|+.||..+|+++.++..+
T Consensus 459 A~D~~tG~~~W~~~~~~-~-~~~g-~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 459 AWDPVKQQAAWEVPYVT-I-FNGG-TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEETTTTEEEEEEEESS-S-CCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCCeEeEccCCC-C-ccCc-cceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 99999999888775543 1 2222 4667788999999 999999999999999888765
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.30 E-value=1.6e-10 Score=120.30 Aligned_cols=208 Identities=10% Similarity=0.019 Sum_probs=130.6
Q ss_pred ceEEEEecCCCCEEEEE-----eCCCcEEEEeCCCCCCC-cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe------
Q 009022 268 MLYGMDINPEKGVVLVA-----DNFGFLYLVDARTNSRS-GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF------ 335 (546)
Q Consensus 268 ~v~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~------ 335 (546)
.+.+++|||+|++|+.+ +.+..|++||+.+++.. .. .........++|+| +++.|+.++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~----~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD----VIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC----CBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc----ccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 58899999999999954 33468999999988754 21 11111226799999 9999999888766
Q ss_pred -------EEEEECCCCCCCc-eeeec-CCCCcEEEEEEeCCCCEEEEEeCCC----cEEEEECCCCCCCCCCcceeeccC
Q 009022 336 -------ARIWDIRRLEAGS-SLCDL-PHKRVVNSAYFSPSGSKILTTSQDN----RLRIWDSIFGNLDSPSREIVHSHD 402 (546)
Q Consensus 336 -------i~iwd~~~~~~~~-~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~ 402 (546)
|++|++.+..... .+... .+...+.++.|+|+|++|+.++.++ .|++|+..++.. ..+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~----~~l~~~-- 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF----RLLVKG-- 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC----EEEEEC--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce----EEeecC--
Confidence 9999998655322 22222 3556789999999999998887666 677776544432 111111
Q ss_pred CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhh--hHhhcCCC-CCcccceeeecCCCcEEEE
Q 009022 403 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL--VAEVMDPN-ITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 403 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~--~~~~~~~~-~~~i~~v~~~s~~~~~l~s 479 (546)
.. ......| |+ |.++...-.+..++.|.+|++.++.. ...+..+. ...+..+ +|+ ++.++++
T Consensus 271 ~~---~~~~~~~-~~---------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~-~~~-~~~lv~~ 335 (695)
T 2bkl_A 271 VG---AKYEVHA-WK---------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV-SIV-GGHLSLE 335 (695)
T ss_dssp SS---CCEEEEE-ET---------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE-EEE-TTEEEEE
T ss_pred CC---ceEEEEe-cC---------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE-EEE-CCEEEEE
Confidence 11 1123344 33 22222101133568899999988753 23444443 3445555 676 6777888
Q ss_pred ec-CCcEEEEcCC-CCCccceeec
Q 009022 480 GS-SRSIFIWRPK-EKSELVEQKE 501 (546)
Q Consensus 480 gs-dg~i~vwd~~-~~~~~~~~~~ 501 (546)
.. |+..+||.+. +|+.+..+..
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~ 359 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQL 359 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCC
T ss_pred EEECCEEEEEEEeCCCCeeEEecC
Confidence 87 8888888654 3554444443
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=4.9e-09 Score=96.74 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=135.6
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.+..-.-+..|+|++..++++....+.|..|+..++.... + .....+.+++|+|+ ++++++ . ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--~~~~~~~~i~~~~d-G~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V--TMDAPVSSVALRQS-GGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E--ECSSCEEEEEEBTT-SSEEEE-E-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E--eCCCceEEEEECCC-CCEEEE-E-CCeEEEEECCCC
Confidence 3444566899999765788888889999999998765532 2 24567999999999 775554 4 567999999888
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+.......... .....++.++++|+|+++++... .+.|+.++.. .... .........+.
T Consensus 84 ~~~~~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~---~~~~~~~~png 153 (297)
T 3g4e_A 84 SAVVLATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HHVK---KYFDQVDISNG 153 (297)
T ss_dssp EEEEEEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SCEE---EEEEEESBEEE
T ss_pred cEEEEEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CCEE---EEeeccccccc
Confidence 75544332211 11235789999999997765532 2344444433 1111 11122225789
Q ss_pred EEECCCCCCEE-EEEeCCCeEEEEECC--CCCCC--ceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 317 LHCNPIQPELL-LSCGNDHFARIWDIR--RLEAG--SSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 317 ~~~~p~~~~~l-~~~~~dg~i~iwd~~--~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++|+| +++.| ++.+..+.|.+|++. ++... ..+..+ .+...+..++++++|++.++....+.|.+||..++++
T Consensus 154 i~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 154 LDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred eEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence 99999 88755 455667899999974 22211 122222 2345678899999998877777778899999876654
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=9.7e-09 Score=94.78 Aligned_cols=199 Identities=8% Similarity=-0.026 Sum_probs=138.8
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
+...+.+|++.++| +++++...++.|.+||.. +.............+.++++.++ +.++++...++.|..|+.. ++
T Consensus 60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-CC
Confidence 34578899999999 677777667889999988 44432222224467899999998 8877777768899999987 55
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
... +.... ....+.++++.++++++++....+.|..|+. ++... ..........+.++++.+ ++.+++
T Consensus 136 ~~~-~~~~~-------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~~~~~~~~~~~i~~d~-~g~l~v 203 (300)
T 2qc5_A 136 IYE-YDLPN-------KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE--EYPLPTNAAAPVGITSGN-DGALWF 203 (300)
T ss_dssp EEE-EECSS-------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEECSSTTCCEEEEEECT-TSSEEE
T ss_pred EEE-ccCCC-------CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE--EeeCCCCCCCcceEEECC-CCCEEE
Confidence 442 22211 1124789999999997777666789999998 43322 112222334688999999 888777
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+....+.|.+|+. +... ..+........+.+++++++|+++++...++.|..|+.
T Consensus 204 ~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 204 VEIMGNKIGRITT-TGEI-SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EccCCCEEEEEcC-CCcE-EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 7766788999998 2221 11111134566889999999987777666789999998
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=6.6e-10 Score=107.20 Aligned_cols=243 Identities=8% Similarity=-0.039 Sum_probs=154.4
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC--cEEE
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--FLYL 292 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i 292 (546)
.....|+|+++ ++++++...++.|++||+.++.......... ... ++|+++++.|+++..++ .|++
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------GGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETCC----------BCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccCC----------CCc-eeEecCCCcEEEEecCCCceEEE
Confidence 35788999998 7777777778999999999887665543311 133 88999999999988766 7888
Q ss_pred EeCCCCCCCcceEEeec-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceee---ecCCCCcE--EEEEEeC
Q 009022 293 VDARTNSRSGEAILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC---DLPHKRVV--NSAYFSP 366 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v--~~~~~~p 366 (546)
|+..........-.... ....+.+++++| +...|+++..++.|+.||..+... ..+. ..+....- ..++|+|
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEET
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeC
Confidence 88765443211101111 334678899999 555555577788999999875432 1221 11222222 3899999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeecc---C-------CcccCCceeEEecCCCCCCceeEEeeeeeecCC
Q 009022 367 -SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH---D-------FNRHLTPFRAEWDPKDPSESLAVIGRYISENYN 435 (546)
Q Consensus 367 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 435 (546)
++.++++-...+.|+.|+.... . ..+.... . ......+..++++|+ |.+++ +
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~-~----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d---------G~lyv---a 339 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE-C----EWFCGSATQKTVQDGLREEALFAQPNGMTVDED---------GNFYI---V 339 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC-E----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT---------CCEEE---E
T ss_pred CCCEEEEEeCCCCEEEEEecCCC-E----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC---------CCEEE---E
Confidence 4666666677889999987532 1 0000000 0 011223567888887 54444 3
Q ss_pred CC-cCcceEEEECCchhhhHhhcCC--------------CCCcccceeeecCCCcEEEEec-CCcEEEEcC
Q 009022 436 GA-ALHPIDFIDITTGQLVAEVMDP--------------NITTISPVNKLHPRDDVLASGS-SRSIFIWRP 490 (546)
Q Consensus 436 g~-~d~~i~iwd~~~~~~~~~~~~~--------------~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~ 490 (546)
.. .++.|++|++.+|... ++.++ .......+ +++++|.++++-. .+.|+.+.+
T Consensus 340 d~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~gi-avd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDI-CYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEE-EECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEE-EEcCCCCEEEEECCCCeEEEEEe
Confidence 44 6788999997777643 22222 11234456 8999988888877 788887765
No 210
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.28 E-value=1.5e-09 Score=98.55 Aligned_cols=197 Identities=10% Similarity=0.047 Sum_probs=140.6
Q ss_pred eeccccC-CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-CCeEEE
Q 009022 164 AVIRYHS-RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSC 241 (546)
Q Consensus 164 ~~~~~h~-~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~i 241 (546)
..+..|. ..+.++.++|+| ++|++ .++.|..||. +++.+..+.......+.++.+.|+ +++|++.+. ++.|..
T Consensus 29 w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d-G~~lv~~~~~~~~v~~ 103 (276)
T 3no2_A 29 WEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD-GNALVAWCGHPSTILE 103 (276)
T ss_dssp EEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT-SCEEEEEESTTEEEEE
T ss_pred EEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCC-CCEEEEecCCCCEEEE
Confidence 3444444 468899999999 67773 4678999999 788877775433457889999999 889998887 788888
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
++. +|+.+..+...... .........+++.++|+++++...++.|..||.. ++...+. .. ...+.++...+
T Consensus 104 vd~-~Gk~l~~~~~~~~~---~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~---~~-~~~~~~~~~~~ 174 (276)
T 3no2_A 104 VNM-KGEVLSKTEFETGI---ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV---KL-SGTPFSSAFLD 174 (276)
T ss_dssp ECT-TSCEEEEEEECCSC---SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE---EC-SSCCCEEEECT
T ss_pred EeC-CCCEEEEEeccCCC---CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE---EC-CCCccceeEcC
Confidence 886 67777777653321 0111134456789999999999999999999987 6654432 11 12456677788
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecC----CCCcEEEEEEeCCCCEEEEEe
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP----HKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~s 375 (546)
+++++++++.++.|..+|..+++..-.+.... .-..+..+...++|.++++..
T Consensus 175 -~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 175 -NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred -CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 89999998888899999987655422222111 123478888999999888874
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=3.9e-09 Score=100.30 Aligned_cols=242 Identities=9% Similarity=-0.018 Sum_probs=151.5
Q ss_pred EEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEeccc------CCCceEEEEEecCCCCEEEEEeC--C
Q 009022 175 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASS--D 236 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~--d 236 (546)
.++|+|+| ++|+.+. .++.|.+||..+.+....+..+ +......+.|+|+ +++|+++.. +
T Consensus 70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAG 147 (373)
T ss_pred CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC-CCEEEEEecCCC
Confidence 89999999 5566554 3678999999887766555322 0123458999999 888888764 5
Q ss_pred CeEEEEECCCCceeee-eecCCCCCCCCCcccceEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCcceE--EeecCCC
Q 009022 237 GTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAI--LIHRKGS 312 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~ 312 (546)
+.|.++| .+++.+.. +... .++.+.|.+ ..+++.+.+|.+.+++. +++...... .......
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~-------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP-------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC-------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence 7899999 99988766 5332 123344544 45666778899999999 655432110 0001111
Q ss_pred cE-EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-----------CCCcEEEEEEeCCCCEEEEEeC----
Q 009022 313 KV-VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----------HKRVVNSAYFSPSGSKILTTSQ---- 376 (546)
Q Consensus 313 ~i-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~s~s~---- 376 (546)
++ ....+.+ ++..++..+..+.+.+.|+..... ..+..+. .......+.++|+++.++++..
T Consensus 213 p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 213 NLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred ceeecceeEe-cCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 21 2344566 444444344678999999864321 1111110 1223445789999888877653
Q ss_pred ------CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee-eeeecCCCC-cCcceEEEECC
Q 009022 377 ------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGA-ALHPIDFIDIT 448 (546)
Q Consensus 377 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~-~d~~i~iwd~~ 448 (546)
.+.|.++|+.+++.+.. ..... .+..+.|+|+ |+ ++. ++. .++.|.|||+.
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~-------i~~g~--~p~~i~~s~D---------g~~~l~---v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQ-------ISLGH--DVDAISVAQD---------GGPDLY---ALSAGTEVLHIYDAG 349 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEE-------EECCC--CcCeEEECCC---------CCeEEE---EEcCCCCeEEEEECC
Confidence 35799999988765321 11111 3568899998 55 333 333 47899999999
Q ss_pred chhhhHhh
Q 009022 449 TGQLVAEV 456 (546)
Q Consensus 449 ~~~~~~~~ 456 (546)
+++.+.++
T Consensus 350 t~~vv~~i 357 (373)
T 2mad_H 350 AGDQDQST 357 (373)
T ss_pred CCCEEeee
Confidence 99988773
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=5.8e-10 Score=104.47 Aligned_cols=250 Identities=10% Similarity=0.003 Sum_probs=155.3
Q ss_pred EEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEecccC------CCceEEEEEecCCCCEEEEEeC--C
Q 009022 175 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNPTNDGTVYAASS--D 236 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~--d 236 (546)
.++++|+|. +|+++. .++.|.+||..+.+....+..+. ......+.|+|+ +++|+++.. +
T Consensus 82 ~va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSS
T ss_pred cEEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCC
Confidence 399999995 454443 35789999999988777663221 124567999999 888887764 6
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC-CCCCcceE-EeecCCCcE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART-NSRSGEAI-LIHRKGSKV 314 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~i 314 (546)
+.|.++|+.+++.+..+.... + ...+....+.+++.+.||.+.++++.. ++...... .+.....++
T Consensus 160 ~~VsVID~~t~~vv~tI~v~g-----------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~ 227 (386)
T 3sjl_D 160 PAVGVVDLEGKAFKRMLDVPD-----------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 227 (386)
T ss_dssp CEEEEEETTTTEEEEEEECCS-----------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred CeEEEEECCCCcEEEEEECCC-----------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccc
Confidence 899999999999998875431 1 122333456667777788888888866 33211000 000011122
Q ss_pred E-EEEECCCCCCEEEEEeCCCeEEEEECCCCCC--CceeeecC--------CCCcEEEEEEeCCCCEEEEEeC-------
Q 009022 315 V-GLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLP--------HKRVVNSAYFSPSGSKILTTSQ------- 376 (546)
Q Consensus 315 ~-~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~~p~~~~l~s~s~------- 376 (546)
. ...|.+.++++++ .+.+|.|+++|+..... ...+..+. ....+..++++|+++.+++...
T Consensus 228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h 306 (386)
T 3sjl_D 228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 306 (386)
T ss_dssp CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence 1 2355432665444 55689999999965431 12221000 1223345778998888877643
Q ss_pred ---CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee-eeeecCCCCcCcceEEEECCchhh
Q 009022 377 ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQL 452 (546)
Q Consensus 377 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~~d~~i~iwd~~~~~~ 452 (546)
.+.|.++|+.+++.+.. .... ..+..+.++|+ |+ ++.. +...++.|.|+|..+++.
T Consensus 307 k~~~~~V~viD~~t~kv~~~-------i~vg--~~~~~lavs~D---------~~~~ly~--tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 307 KTASRFVVVLDAKTGERLAK-------FEMG--HEIDSINVSQD---------EKPLLYA--LSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TSCEEEEEEEETTTCCEEEE-------EEEE--EEECEEEECSS---------SSCEEEE--EETTTTEEEEEETTTCCE
T ss_pred CCCCCEEEEEECCCCeEEEE-------EECC--CCcceEEECCC---------CCeEEEE--EcCCCCeEEEEECCCCcE
Confidence 25799999998876331 1111 12347888888 43 2210 234578899999999999
Q ss_pred hHhhcCC
Q 009022 453 VAEVMDP 459 (546)
Q Consensus 453 ~~~~~~~ 459 (546)
+.++...
T Consensus 367 ~~~i~~~ 373 (386)
T 3sjl_D 367 LRSVNQL 373 (386)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8888654
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=1.5e-09 Score=100.69 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=145.0
Q ss_pred CCCceEEEEEecCCCC-EEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEE
Q 009022 213 HSCIVNNIRFNPTNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 291 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 291 (546)
.........|+|+ ++ ++++...++.|..|+. ++.. ..+..... .+..++++++|+++++....+.|.
T Consensus 43 ~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~---------~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 43 QATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA---------FTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET-TSCE-EEEEESCS---------CEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC---------ccceeeECCCCCEEEEECCCCEEE
Confidence 4445678999999 66 6777778899999998 4543 33332221 378999999999777766678899
Q ss_pred EEeCCCCCCCcceEEeec--CCCcEEEEEECCCCCCEEEE----EeC-------------CCeEEEEECCCCCCCceeee
Q 009022 292 LVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLS----CGN-------------DHFARIWDIRRLEAGSSLCD 352 (546)
Q Consensus 292 i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~ 352 (546)
+|+.. +.. ..+..... ....+..+++.| ++.++++ |.. .+.|+.||..+++.....
T Consensus 111 ~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-- 185 (305)
T 3dr2_A 111 RSDAD-GQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-- 185 (305)
T ss_dssp EECTT-SCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred EECCC-CCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence 99975 332 11111111 112467899999 8888886 332 256788887554432221
Q ss_pred cCCCCcEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEE
Q 009022 353 LPHKRVVNSAYFSPSGSKILTTSQD------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI 426 (546)
Q Consensus 353 ~~~~~~v~~~~~~p~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 426 (546)
.....+.++|+|+++.|+++... +.|.+|++..+.+ .. ....... ....+-.+.++++
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~-~~~~~~~---~~~~pdgi~~d~~--------- 249 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HD-RRHFASV---PDGLPDGFCVDRG--------- 249 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EE-EEEEECC---SSSCCCSEEECTT---------
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cC-CeEEEEC---CCCCCCeEEECCC---------
Confidence 23456789999999988777665 6899999865431 10 0111110 0111224555555
Q ss_pred eeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEc
Q 009022 427 GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWR 489 (546)
Q Consensus 427 g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd 489 (546)
|++.+ +..+ .|.+|+. .++.+..+..+. .+..+ +|+|+++.|+.++.+.|..++
T Consensus 250 G~lwv----~~~~-gv~~~~~-~g~~~~~~~~~~--~~~~~-~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 250 GWLWS----SSGT-GVCVFDS-DGQLLGHIPTPG--TASNC-TFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCEEE----CCSS-EEEEECT-TSCEEEEEECSS--CCCEE-EECTTSCEEEEEETTEEEEEE
T ss_pred CCEEE----ecCC-cEEEECC-CCCEEEEEECCC--ceeEE-EEeCCCCEEEEEcCCeEEEEE
Confidence 55443 2333 4999998 566666665543 35555 899999888877744444433
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1e-09 Score=112.91 Aligned_cols=305 Identities=13% Similarity=0.091 Sum_probs=179.8
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC----------ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC----------IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.|++++.++.|.-+|..+++.+..+...... ....+++. +..|+.++.|+.|..+|..+|+.+..+.
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 4666677889999999999888877422110 11233332 5688888999999999999999998877
Q ss_pred cCCCCCCCCCcccceEE-EEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecC-----------------
Q 009022 255 VNPNGWHGPRTWRMLYG-MDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK----------------- 310 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~----------------- 310 (546)
......... .+.+ ..+ .+..+++++. ++.|+.||..+++...........
T Consensus 156 ~~~~~~~~~----~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 156 TFEGQKGSL----TITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp TTTTCCSSC----BCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred CCcCcCcCc----ccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 641100000 0110 001 2445555543 689999999998765433211110
Q ss_pred ------------CCcEEEEEECCCCCCEEEEEeCCC-------------------eEEEEECCCCCCCceeeecCCC---
Q 009022 311 ------------GSKVVGLHCNPIQPELLLSCGNDH-------------------FARIWDIRRLEAGSSLCDLPHK--- 356 (546)
Q Consensus 311 ------------~~~i~~~~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~--- 356 (546)
......++++| +...|+.+..++ .|..+|..+++..-.+....|.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred cccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 01123567888 777888777654 5999999876543222222231
Q ss_pred ----CcEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCCCCCCCcce--------------ee-------------ccC
Q 009022 357 ----RVVNSAYFSPSG---SKILTTSQDNRLRIWDSIFGNLDSPSREI--------------VH-------------SHD 402 (546)
Q Consensus 357 ----~~v~~~~~~p~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------------~~-------------~~~ 402 (546)
....-+....+| ..|++++.+|.|+++|..+|+++...... .. ...
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122223343477 68999999999999999999874321100 00 000
Q ss_pred CcccCCceeEEecCCCCCCceeEEeeeee----------------------ecCCC----------CcCcceEEEECCch
Q 009022 403 FNRHLTPFRAEWDPKDPSESLAVIGRYIS----------------------ENYNG----------AALHPIDFIDITTG 450 (546)
Q Consensus 403 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~----------------------~~~~g----------~~d~~i~iwd~~~~ 450 (546)
..+...-..++++|+.....+.. ..... ..+.| ...+.|..||+.+|
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPA-QNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEE-EECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred cccccCCCCceEcCCCCEEEEeC-hhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 00000001345566532211111 10000 00001 12378999999999
Q ss_pred hhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 451 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+.+.++.... ..... .+.+.+.+|+.++ ||.|++||+.+|+.+.++..+.
T Consensus 468 ~~~W~~~~~~--~~~~g-~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 468 KAAWSVEHVS--PWNGG-TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEEESS--SCCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cEEeecCCCC--CCcCc-ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 9887775332 22233 4667788888888 9999999999999999887554
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=1.5e-08 Score=94.79 Aligned_cols=196 Identities=9% Similarity=-0.004 Sum_probs=129.1
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
-..+..|+|++..++++...++.|.+|+..++...... ....+.+++|+|+ ++++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE---CCCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcEEE
Confidence 35678999986578888888899999999876543322 3467999999998 7766654 44 49999998887543
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
...... ......++.+.++|+|+++++... .+.|+.++ +++. . ...........++|+| +++
T Consensus 124 ~~~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~---~~~~~~~~~~~i~~s~-dg~ 191 (326)
T 2ghs_A 124 HAELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-T---KLFADISIPNSICFSP-DGT 191 (326)
T ss_dssp EECSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-E---EEEEEESSEEEEEECT-TSC
T ss_pred EeeCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-E---EeeCCCcccCCeEEcC-CCC
Confidence 322111 011125889999999997765542 25666666 3321 1 1111122567899999 887
Q ss_pred EEEE-EeCCCeEEEEECC--CC-CCC--ceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 326 LLLS-CGNDHFARIWDIR--RL-EAG--SSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 326 ~l~~-~~~dg~i~iwd~~--~~-~~~--~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
.|+. .+.++.|.+|++. ++ ... ..+..+ .....+..+++.++|.+.++...++.|.+|+.
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 6654 4557899999985 33 221 122222 23456778999999987777666678888876
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.20 E-value=5e-09 Score=97.56 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=133.2
Q ss_pred cCCCeEEEEEcCC-CCcEEEEEcCCCcEEEEeCCCCceeEE-ecc---cCCCceEEEEEecCCCCEEEEEeCC-------
Q 009022 169 HSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIV-YGN---IHSCIVNNIRFNPTNDGTVYAASSD------- 236 (546)
Q Consensus 169 h~~~V~~l~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~l~s~~~d------- 236 (546)
+...+.+++++++ | +++++.. .+.|.+|+.. +..... ... .....+.++++.++ ++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccc
Confidence 5567999999999 7 6555554 3479999988 543322 111 12245889999998 7777776654
Q ss_pred --------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec----CCCCEEEEE-eCCCcEEEEeCC-CCCCCc
Q 009022 237 --------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----PEKGVVLVA-DNFGFLYLVDAR-TNSRSG 302 (546)
Q Consensus 237 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~ 302 (546)
+.|..|+.. ++........ .....++|+ ++++.|+++ ..++.|.+|++. .+....
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~----------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAF----------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEE----------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCC----------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 567778766 5443322110 136788999 999766555 567899999976 322111
Q ss_pred --ceEEeecCC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE-EEeCCC
Q 009022 303 --EAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL-TTSQDN 378 (546)
Q Consensus 303 --~~~~~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~s~dg 378 (546)
.......+. ..+..+++++ +++++++...++.|.+||..+.+....+. .+...+.+++|+|+++.|+ +...++
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred ceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCC
Confidence 111111221 4578899999 88888888788999999987544322222 2446789999999999554 445568
Q ss_pred cEEEEECCC
Q 009022 379 RLRIWDSIF 387 (546)
Q Consensus 379 ~i~vwd~~~ 387 (546)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 899999864
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.20 E-value=3.1e-10 Score=106.64 Aligned_cols=285 Identities=8% Similarity=-0.108 Sum_probs=171.0
Q ss_pred cEEEEEcCCC----cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----------CCCeEEEEECCCCce
Q 009022 184 HILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLA 249 (546)
Q Consensus 184 ~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~ 249 (546)
+.+++-..++ +|.++|..+.+.+..+..+.. + .+.|+|+ +++++.+. .++.|.+||+.+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 4455554444 888999999998888755543 4 7999999 77777765 368899999999999
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEE--EeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYL--VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+..+..+..... ........+.++|+|++++++.. ...|.+ +|+.+ .. .+... + . +.+.|....
T Consensus 109 v~~I~v~~~~~~--~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~-~i~v~--~-~---~~~~p~g~~ 176 (368)
T 1mda_H 109 IADIELPDAPRF--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ-LTKSA--S-C---FHIHPGAAA 176 (368)
T ss_dssp EEEEEETTSCSC--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE-EEECS--S-C---CCCEEEETT
T ss_pred EEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce-EEECC--C-c---eEEccCCCe
Confidence 999876511100 00012457899999999999864 457888 88876 11 11111 1 1 122342334
Q ss_pred EEEEEeCCCeEEEEECCC-----CCCCce---eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcce
Q 009022 326 LLLSCGNDHFARIWDIRR-----LEAGSS---LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 397 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~-----~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 397 (546)
.+++.+.||.+.+.++.+ ++.... ....+ ..+. . .+++..++..+. +.|.+.|+..+.. .+
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-----~v 245 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-----TM 245 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC-SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-----EE
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC-CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-----eE
Confidence 556666788888888865 211100 00111 2233 3 666666666666 9999999865321 00
Q ss_pred eeccCCc------ccCCc---eeEEecCCCCCCceeEE---eeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccc
Q 009022 398 VHSHDFN------RHLTP---FRAEWDPKDPSESLAVI---GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 465 (546)
Q Consensus 398 ~~~~~~~------~~~~~---~~~~~~p~~~~~~~~~~---g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 465 (546)
.....+. ....+ -.+.++|+.....+... +..+ +. .+.+.++|+.+++.+..+..+. ...
T Consensus 246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~-----~~-~~~~~ViD~~t~~vv~~i~vg~--~p~ 317 (368)
T 1mda_H 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL-----AA-AENTSSVTASVGQTSGPISNGH--DSD 317 (368)
T ss_dssp ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT-----SC-EEEEEEEESSSCCEEECCEEEE--EEC
T ss_pred EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc-----cc-CCCEEEEECCCCeEEEEEECCC--Ccc
Confidence 0000000 00000 01567776321111111 0000 00 2235599999999988886543 345
Q ss_pred ceeeecCCCc-EEEEec--CCcEEEEcCCCCCccceeeccce
Q 009022 466 PVNKLHPRDD-VLASGS--SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 466 ~v~~~s~~~~-~l~sgs--dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
.+ +|+|+|+ ++++.. ++.|.++|+.+++.+.++.....
T Consensus 318 gi-~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 318 AI-IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EE-EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred eE-EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 66 8999997 444443 89999999999999988875544
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=5.1e-10 Score=105.67 Aligned_cols=279 Identities=9% Similarity=0.006 Sum_probs=159.2
Q ss_pred CCeEEEEEcCCCCcEEEEEc--CCCcEEEEeCCCCceeEEe------cccCCCceEEEEEecCCCCEEEEEeC-----CC
Q 009022 171 RRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVY------GNIHSCIVNNIRFNPTNDGTVYAASS-----DG 237 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg 237 (546)
..+..|+++|+| +++++.. .++.++||.+.++.. ..+ ...|...+..++|.++ ++++++-.. ++
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCC
Confidence 689999999999 6787753 234356666543332 211 1134567899999998 766665433 57
Q ss_pred eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-e---CCCcEEEEeCCCCCCCcceEEeecCCCc
Q 009022 238 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-D---NFGFLYLVDARTNSRSGEAILIHRKGSK 313 (546)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 313 (546)
.|.+||+.+++.+..+..+.... .....+..+++++++..++++ . .++.|.+||+.+++... ....+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r---~~~~~~~~ 167 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR---VLQGYPGI 167 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE---ECTTCTTT
T ss_pred eEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE---EecCCCcc
Confidence 89999999998777776542211 111236889999865555444 4 57899999998764321 11111000
Q ss_pred EE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 314 VV-GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 314 i~-~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
.. ...+.+ ++..+.+.+.++.++.|. ..+..|+|+|+++.|+++...+. ++|.+.+..+..
T Consensus 168 ~~~~~~~~~-~g~~~~~~~~~g~~~~~~----------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~ 229 (343)
T 2qe8_A 168 APEDIDLVI-DGVPVQIGQPDGTVIRPH----------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSN 229 (343)
T ss_dssp SCCSCCCEE-TTEECBEECTTSCEECCC----------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTC
T ss_pred cccccceeE-CCEEEEeccCCCceecee----------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcC
Confidence 00 022333 455555566666665442 23678999999998888877663 445443211000
Q ss_pred ---CCcceeeccC-CcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCccccee
Q 009022 393 ---PSREIVHSHD-FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 468 (546)
Q Consensus 393 ---~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~ 468 (546)
....+..... ......+-.++++++ |.+.+ +....+.|.+|+..+|+...............+
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~---------G~l~v---a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~v- 296 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKD---------HNIYV---GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSF- 296 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTT---------CCEEE---EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEE-
T ss_pred CCCChhhhhcceEecccCCCCceEEECCC---------CCEEE---EccCCCeEEEEECCCCCEEEEEECCceecCCee-
Confidence 0000000000 001112335667766 55444 455668899999866653222222222345566
Q ss_pred eecCCCcEEEEec-CCcEEEEc
Q 009022 469 KLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 469 ~~s~~~~~l~sgs-dg~i~vwd 489 (546)
+|.+++.++++.+ .+.+.+|.
T Consensus 297 a~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EECTTSCEEEEECCGGGSGGGB
T ss_pred EECCCCcEEEEeCccccccccc
Confidence 8999998888876 45554443
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=2.8e-09 Score=109.84 Aligned_cols=270 Identities=14% Similarity=0.092 Sum_probs=158.7
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEeccc-CCC---ceEEEEEecCCCCEEEEEe------CCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNI-HSC---IVNNIRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.|+.|..+|..+++.+..+... +.. .+.+.-...+ + .++.++ .+|.|+.||..+|+.+..+.
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN-G-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC-C-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 5788888999999999999988776432 211 1111111112 3 444443 36899999999999988775
Q ss_pred cCCC-CCCCC---------------------CcccceEEEEecCCCCEEEEEeCCCc-------------------EEEE
Q 009022 255 VNPN-GWHGP---------------------RTWRMLYGMDINPEKGVVLVADNFGF-------------------LYLV 293 (546)
Q Consensus 255 ~~~~-~~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~i~ 293 (546)
.... ..... ........++++|+...+++++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 3211 00000 00001135788999999999987763 9999
Q ss_pred eCCCCCCCcceEEeec------CCCcEEEEEECCCCCC---EEEEEeCCCeEEEEECCCCCCCceeeecC----------
Q 009022 294 DARTNSRSGEAILIHR------KGSKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLP---------- 354 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~------~~~~i~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 354 (546)
|..+++........+. ...++....... ++. .++.++.+|.|+++|..+++.........
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 9999876553321111 111222222222 343 78889999999999998766421110000
Q ss_pred ----------------CC-----------CcEEEEEEeCCCCEEEEEeCC------------------------------
Q 009022 355 ----------------HK-----------RVVNSAYFSPSGSKILTTSQD------------------------------ 377 (546)
Q Consensus 355 ----------------~~-----------~~v~~~~~~p~~~~l~s~s~d------------------------------ 377 (546)
.. .....++|+|+..+|++...+
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 00 011237889988888877544
Q ss_pred ---------------CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcce
Q 009022 378 ---------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPI 442 (546)
Q Consensus 378 ---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i 442 (546)
|.|..||+.+|+...... .. .|. ....+...|.++. .|+.|+.|
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------~~----------~~~-~~g~~~tagglvf---~gt~dg~l 498 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-------YV----------TIF-NGGTLSTAGNLVF---EGSADGRV 498 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-------ES----------SSC-CCCEEEETTTEEE---EECTTSEE
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEcc-------CC----------CCc-cCccceECCCEEE---EECCCCcE
Confidence 445556665554321100 00 000 1123333454554 67889999
Q ss_pred EEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 443 DFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
+.||..+|+.+.++..+.......+ .|..+|+..++
T Consensus 499 ~a~D~~tG~~lw~~~~~~~~~~~p~-ty~~~G~qyv~ 534 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPAASGVMAAPV-TYSVDGEQYVT 534 (689)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred EEEECCCCccceeeeCCCCcccCce-EEEECCEEEEE
Confidence 9999999999988876653333445 68888875443
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=9.4e-09 Score=95.23 Aligned_cols=204 Identities=10% Similarity=0.036 Sum_probs=133.0
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
..+..+........|+|+|..+++++..++.|..|+.. +.. ..+ ..+...+..++++++ ++++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL-LDATAFTNGNAVDAQ-QRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE-EESCSCEEEEEECTT-SCEEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE-eCCCCccceeeECCC-CCEEEEECCCCEEEEEC
Confidence 34455566778999999995588888889999999984 332 223 335667899999998 87666655668899999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCcceEE
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV----ADN-------------FGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~ 306 (546)
.. ++.......... .....++.++++++|+++++ |.. .+.|+.|+..+++... . .
T Consensus 114 ~~-g~~~~~~~~~~~-----~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~-~ 185 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAG-----KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-M-A 185 (305)
T ss_dssp TT-SCEEEEECEETT-----EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-E-E
T ss_pred CC-CCEEEEEeccCC-----CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-E-e
Confidence 86 553322211100 01113678999999998876 332 3568888876654322 1 1
Q ss_pred eecCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCCC--ceeeecCCCCcEEEEEEeCCCCEEEEEeCCC
Q 009022 307 IHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAG--SSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 378 (546)
Q Consensus 307 ~~~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg 378 (546)
.......++|+| ++..|+.+... +.|++|++...... ..+.. ........++++++|++.+ ++.+
T Consensus 186 ---~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv-~~~~- 258 (305)
T 3dr2_A 186 ---DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWS-SSGT- 258 (305)
T ss_dssp ---EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEE-CCSS-
T ss_pred ---cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEE-ecCC-
Confidence 122578899999 88877776654 78999998643210 11111 1233456789999999544 4444
Q ss_pred cEEEEECC
Q 009022 379 RLRIWDSI 386 (546)
Q Consensus 379 ~i~vwd~~ 386 (546)
.|.+|+..
T Consensus 259 gv~~~~~~ 266 (305)
T 3dr2_A 259 GVCVFDSD 266 (305)
T ss_dssp EEEEECTT
T ss_pred cEEEECCC
Confidence 49999974
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=3.4e-08 Score=94.57 Aligned_cols=274 Identities=12% Similarity=0.045 Sum_probs=162.0
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccC--------CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH--------SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
.|++++.++.|..+|..+++......... ...+.+.- ... +..++.++.++.|..+|..+|+.+......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVS-GGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEE-TTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEe-CCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 57777888999999999988776654221 12232221 223 568888889999999999999988776654
Q ss_pred CCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC--CcEEEEEECCCCCCEEEEEeCCC
Q 009022 257 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.... ..... .+..+++++.++.|..+|..+++............ ........ .+..+++++.++
T Consensus 133 ~~~~---------~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g 198 (376)
T 3q7m_A 133 GEAL---------SRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNG 198 (376)
T ss_dssp SCCC---------SCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTT
T ss_pred CceE---------cCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCC
Confidence 3211 00111 25578888999999999999887554321110000 00011122 235677788899
Q ss_pred eEEEEECCCCCCCceeeecCCCC-----cEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccC
Q 009022 335 FARIWDIRRLEAGSSLCDLPHKR-----VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 407 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~p--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 407 (546)
.|..+|..+++..-......... .+..+...| .+..+++++.++.|..+|..+++.... ......
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~-------~~~~~~- 270 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK-------RELGSV- 270 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE-------ECCCCE-
T ss_pred EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee-------ccCCCC-
Confidence 99999997654321111100000 000011112 356777888899999999988865221 000000
Q ss_pred CceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEE
Q 009022 408 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 486 (546)
Q Consensus 408 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~ 486 (546)
......+..+. .+..++.|..+|..+|+.+..........+... .. .+..|+.++ +|.|.
T Consensus 271 -------------~~~~~~~~~l~---~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~--~~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 271 -------------NDFIVDGNRIY---LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP-VL--YNGNLVVGDSEGYLH 331 (376)
T ss_dssp -------------EEEEEETTEEE---EEETTCCEEEEETTTCCEEEEECTTTTSCCCCC-EE--ETTEEEEECTTSEEE
T ss_pred -------------CCceEECCEEE---EEcCCCeEEEEECCCCcEEEeecccCCCcccCC-EE--ECCEEEEEeCCCeEE
Confidence 01112222222 355678899999999987765542221223222 22 345677777 89999
Q ss_pred EEcCCCCCccceeec
Q 009022 487 IWRPKEKSELVEQKE 501 (546)
Q Consensus 487 vwd~~~~~~~~~~~~ 501 (546)
+||..+|+.+.....
T Consensus 332 ~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 332 WINVEDGRFVAQQKV 346 (376)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCcEEEEEec
Confidence 999999998877665
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.11 E-value=1.4e-09 Score=102.37 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=104.2
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
.+.. |++|+| ++ ++|+++ .++.|++||+.+....... ..|...+.++.+.+. .+++++.||.|.+||+..+
T Consensus 86 ~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 86 EIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp ECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC
T ss_pred eCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC---CEEEEECCCCEEEEEccCC
Confidence 3666 999999 77 688888 8899999999876654444 567788988887764 3888999999999999988
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-cceEE----ee---cCCCcEEEEEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS-GEAIL----IH---RKGSKVVGLHC 319 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~----~~---~~~~~i~~~~~ 319 (546)
...... ..|.+++|+|+| +++|..||.+++|+....... ...+. .. .+...|.+|.|
T Consensus 157 ~~~~~~-------------~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 157 STKQLA-------------QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp CEEEEE-------------ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred cccccc-------------CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence 765321 149999999999 788999999999988765421 11110 12 24568999999
Q ss_pred CCCCCCEEEE
Q 009022 320 NPIQPELLLS 329 (546)
Q Consensus 320 ~p~~~~~l~~ 329 (546)
.+ ++.++++
T Consensus 222 l~-~~~flv~ 230 (388)
T 1xip_A 222 LS-PQDFLAV 230 (388)
T ss_dssp SS-SSEEEEE
T ss_pred ec-CCeEEEE
Confidence 99 7777776
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.09 E-value=4.3e-09 Score=100.51 Aligned_cols=245 Identities=11% Similarity=0.021 Sum_probs=152.1
Q ss_pred EEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEeccc------CCCceEEEEEecCCCCEEEEEeC--C
Q 009022 175 CLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASS--D 236 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~--d 236 (546)
.+.++|+|.. |+++. .++.|.++|..+.+....+..+ .......+.|+|+ +++|+.+.. +
T Consensus 122 gia~SpDgk~-lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSF-FAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSC-EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSS
T ss_pred ceEECCCCCE-EEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCC
Confidence 8999999954 44443 4678999999998877665322 1234567899999 888888764 5
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceE-EeecCCCc-
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAI-LIHRKGSK- 313 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~- 313 (546)
+.|.+.|+.+++.+..+.... . ....|+ ...+++.+.+|.+.+.++.+++...... .+.....+
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g-----------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPD-----------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCS-----------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred CeEEEEECCCCeEEEEEEcCC-----------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 789999999999888876531 1 112232 2455556667777777774433221000 00000111
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC--Cceeeec-----C---CCCcEEEEEEeCCCCEEEEEeC-------
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDL-----P---HKRVVNSAYFSPSGSKILTTSQ------- 376 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-----~---~~~~v~~~~~~p~~~~l~s~s~------- 376 (546)
...+.+.+ ++..++..+..+.|.+.|+..... ...+... . .......++++|+++.+++...
T Consensus 267 ~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 267 INHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp CSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred eeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 12346677 667666667789999999854321 0111100 0 0111223689999887776642
Q ss_pred ---CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee-eeeecCCCC-cCcceEEEECCchh
Q 009022 377 ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGA-ALHPIDFIDITTGQ 451 (546)
Q Consensus 377 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~~~g~-~d~~i~iwd~~~~~ 451 (546)
.+.|.++|+.+++.+.. ..... .+..+.|+|+ |+ ++. +.. .++.|.|+|+.+++
T Consensus 346 k~~s~~VsVID~~T~kvv~~-------I~vg~--~P~gia~spD---------g~~~ly---v~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINK-------IELGH--EIDSINVSQD---------AEPLLY---ALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEE-------EEEEE--EECEEEECCS---------SSCEEE---EEETTTTEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCeEEEE-------EECCC--CcCeEEEccC---------CCEEEE---EEcCCCCeEEEEECCCCC
Confidence 35799999998775331 11111 3567889998 54 333 233 47899999999999
Q ss_pred hhHhh
Q 009022 452 LVAEV 456 (546)
Q Consensus 452 ~~~~~ 456 (546)
.+.++
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98886
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=1e-08 Score=105.57 Aligned_cols=270 Identities=16% Similarity=0.114 Sum_probs=162.0
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCC----CceEEEEEecCCCCEEEEEeC------CCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS----CIVNNIRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.|+.|..+|..+++.+..+..... ..+.+.-... +..++.++. +|.|+.||..+|+.+..+.
T Consensus 130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 577888899999999999998887743201 1222211111 345555543 6899999999999988876
Q ss_pred cCCCCCCCC-----------------------CcccceEEEEecCCCCEEEEEeCCC-------------------cEEE
Q 009022 255 VNPNGWHGP-----------------------RTWRMLYGMDINPEKGVVLVADNFG-------------------FLYL 292 (546)
Q Consensus 255 ~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i 292 (546)
......... ........+++++++..+++++.++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 543221000 0001123578899999999887664 4999
Q ss_pred EeCCCCCCCcceEEeecC------CCcEEEEEECCCCC---CEEEEEeCCCeEEEEECCCCCCCceeeecCC--------
Q 009022 293 VDARTNSRSGEAILIHRK------GSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDLPH-------- 355 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~------~~~i~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 355 (546)
+|..+++........+.. .....-+.... ++ ..++.++.+|.|+++|..+++....+.....
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999998765443221110 11122223323 55 6788999999999999987664222211000
Q ss_pred -CCcE------------------------EEEEEeCCCCEEEEEeCC---------------------------------
Q 009022 356 -KRVV------------------------NSAYFSPSGSKILTTSQD--------------------------------- 377 (546)
Q Consensus 356 -~~~v------------------------~~~~~~p~~~~l~s~s~d--------------------------------- 377 (546)
..++ ..++++|+..++++...+
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 0001 257889988888876543
Q ss_pred ----------CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEEC
Q 009022 378 ----------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 447 (546)
Q Consensus 378 ----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~ 447 (546)
|.|..||+.+++...... ... | .....+...|.++. .++.++.+++||.
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------~~~----------~-~~~g~~~~~g~~v~---~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVE-------HVS----------P-WNGGTLTTAGNVVF---QGTADGRLVAYHA 505 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEE-------ESS----------S-CCCCEEEETTTEEE---EECTTSEEEEEET
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecC-------CCC----------C-CcCcceEeCCCEEE---EECCCCcEEEEEC
Confidence 567777777665422100 000 0 01122333344444 5688999999999
Q ss_pred CchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 448 TTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
.+|+.+.++..+.......+ .|.++|+.++.
T Consensus 506 ~tG~~lw~~~~~~~~~~~p~-~y~~~G~~~v~ 536 (677)
T 1kb0_A 506 ATGEKLWEAPTGTGVVAAPS-TYMVDGRQYVS 536 (677)
T ss_dssp TTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred CCCceeeeeeCCCCcccCCE-EEEeCCEEEEE
Confidence 99999998876653333444 67788875443
No 225
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.07 E-value=3.2e-08 Score=91.23 Aligned_cols=190 Identities=10% Similarity=0.049 Sum_probs=121.3
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc---CCCceEEEEEecCCCCEEEEEeC----------
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---HSCIVNNIRFNPTNDGTVYAASS---------- 235 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~---------- 235 (546)
+...+.+++++++| +++++. ++.|.+||..++......... ....+..+++.|+ ++++++...
T Consensus 52 ~~~~~~~i~~~~dG-~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSG-GYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTS-SEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCC-CEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccC
Confidence 34679999999999 555544 568999999876544332111 2245788999998 776665432
Q ss_pred -CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE-EeCCCcEEEEeCC--CCCCCcc--eEEeec
Q 009022 236 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDAR--TNSRSGE--AILIHR 309 (546)
Q Consensus 236 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~--~~~~~~ 309 (546)
.+.|..++.. +........ ....+.++|+|+++.|++ .+..+.|++|++. ++..... ......
T Consensus 128 ~~~~l~~~d~~-g~~~~~~~~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 128 HQGALYSLFPD-HHVKKYFDQ----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp TCEEEEEECTT-SCEEEEEEE----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred CCcEEEEEECC-CCEEEEeec----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence 2344444433 332222111 013678999999987755 4567899999873 4432111 111122
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEe-CCCCEEEEEeC
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS-PSGSKILTTSQ 376 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~s~s~ 376 (546)
....+..+++.+ ++++.++....+.|.+||..+++....+. .+...+++++|. |+++.|++++.
T Consensus 197 ~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 197 EEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEEEcC
Confidence 234678999999 88888888778899999986544322222 244679999998 78877766554
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=1.2e-07 Score=90.65 Aligned_cols=265 Identities=13% Similarity=0.112 Sum_probs=153.9
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 264 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 264 (546)
.|+.++.++.|..+|..+++...... ............ +..++.++.++.|..+|..+++.+..............
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 57777888999999999988877663 222212222222 45788888899999999999998877765432110000
Q ss_pred cccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC----CcEEEEEECC-CCCCEEEEEeCCCeEEEE
Q 009022 265 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG----SKVVGLHCNP-IQPELLLSCGNDHFARIW 339 (546)
Q Consensus 265 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~i~~~~~~p-~~~~~l~~~~~dg~i~iw 339 (546)
...... .+..+++++.++.|..+|..+++............ ..+..+...| ..+..+++++.++.|..+
T Consensus 181 ----~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 181 ----ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ----CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ----CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 011111 14578888889999999998876544321110000 0000011111 024567777889999999
Q ss_pred ECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCC
Q 009022 340 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 419 (546)
Q Consensus 340 d~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 419 (546)
|..+++. +..... .....+.. .+..|++++.++.|..+|..+++.... ....... .
T Consensus 255 d~~tG~~---~w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~------~~~~~~~------------~ 310 (376)
T 3q7m_A 255 DLRSGQI---MWKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT------QSDLLHR------------L 310 (376)
T ss_dssp ETTTCCE---EEEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE------ECTTTTS------------C
T ss_pred ECCCCcE---EeeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe------ecccCCC------------c
Confidence 9976543 322222 23444444 466788888899999999998875211 0000000 0
Q ss_pred CCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEc
Q 009022 420 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 489 (546)
Q Consensus 420 ~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd 489 (546)
.....+.+..+. .+..++.|.++|..+|+.+..+.... ..+...... .+..|+.++ +|.|..|+
T Consensus 311 ~~~~~~~~~~l~---v~~~~g~l~~~d~~tG~~~~~~~~~~-~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVLYNGNLV---VGDSEGYLHWINVEDGRFVAQQKVDS-SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCEEETTEEE---EECTTSEEEEEETTTCCEEEEEECCT-TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ccCCEEECCEEE---EEeCCCeEEEEECCCCcEEEEEecCC-CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 011111232332 46678899999999999877665433 222221122 244566666 99999886
No 227
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=6.1e-08 Score=99.65 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=176.2
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCCC---------ce-EEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.++.|.-+|..+++.+..+...... .+ ..+.+. +..++.++.++.|..+|..+|+.+..+.
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 4666667889999999999888776421110 01 123332 5578888899999999999999988876
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecC------------------
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK------------------ 310 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~------------------ 310 (546)
.............++ + .+..++++.. +|.|+.+|..+++...........
T Consensus 145 ~~~~~~~~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 145 TTDPAKPYSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp CSCTTSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred cCCCCCcceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 532110000000011 1 1345555543 589999999998765443211000
Q ss_pred ----------CCcEEEEEECCCCCCEEEEEeCCC-------------------eEEEEECCCCCCCceeeecCCC-----
Q 009022 311 ----------GSKVVGLHCNPIQPELLLSCGNDH-------------------FARIWDIRRLEAGSSLCDLPHK----- 356 (546)
Q Consensus 311 ----------~~~i~~~~~~p~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~----- 356 (546)
......+++.| ...+++.++.++ .|..+|..+++..-......|.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 01122467777 667888877666 3899999876642222221222
Q ss_pred --CcEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCCCCCCCcc---------------eeeccCC--cc---------
Q 009022 357 --RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSRE---------------IVHSHDF--NR--------- 405 (546)
Q Consensus 357 --~~v~~~~~~p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~---------------~~~~~~~--~~--------- 405 (546)
.++....+..+|+ .|++++.+|.++++|..+|+++..... .+..... ..
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2333333334665 688999999999999999987521100 0000000 00
Q ss_pred --cCCceeEEecCCCCCCceeEEeee----------------eeec--------C-CCCcCcceEEEECCchhhhHhhcC
Q 009022 406 --HLTPFRAEWDPKDPSESLAVIGRY----------------ISEN--------Y-NGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 406 --~~~~~~~~~~p~~~~~~~~~~g~~----------------~~~~--------~-~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
...--.++++|......+.. ... +... + ....++.|..||+.+|+.+.++..
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPY-QEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEE-EECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred ccccCCCcceECCCCCEEEEec-cccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 00001144555432211111 000 0000 0 122458899999999998776654
Q ss_pred CCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 459 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 459 ~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+. ..... .+...+.+|+.|+ ||.|++||..+|+.+..+..+.
T Consensus 457 ~~--~~~~~-~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 457 PT--HWNGG-TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp SS--SCCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CC--CCcCc-eeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 32 12222 4556788888889 9999999999999998886654
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=6.8e-09 Score=101.43 Aligned_cols=240 Identities=11% Similarity=0.103 Sum_probs=151.5
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe-c-CCCCEEEEEe----------------
Q 009022 225 TNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI-N-PEKGVVLVAD---------------- 285 (546)
Q Consensus 225 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~---------------- 285 (546)
+ +++|+.... ++.|.+.|+.+.++...+..+... .+..+++ + |+++++++++
T Consensus 100 D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--------~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred C-CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--------CCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 5 666666554 667999999999988876654322 3778887 5 9999999985
Q ss_pred --CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC-----------------------------
Q 009022 286 --NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----------------------------- 334 (546)
Q Consensus 286 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg----------------------------- 334 (546)
.++.+.++|..+.+...++... . ....++++| ++.++++.+.+.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vg-g---~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVS-G---NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEES-S---CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEeC-C---CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 2357899999886655433221 1 345677888 888888777443
Q ss_pred ---------eEEEEECCCCCCCce-eeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCCC-----CCCCccee
Q 009022 335 ---------FARIWDIRRLEAGSS-LCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNL-----DSPSREIV 398 (546)
Q Consensus 335 ---------~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~~~~-----~~~~~~~~ 398 (546)
.|.+.|.++.+ ... +....-.....++.++|+|+++++++ .+.+|.++|+.+.+. +.+...+.
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~-~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEA-SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HHTCSEEETTEEEEECSGGG-CCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred cCCCeeEECcEEEEeCcccC-CceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 36677776521 112 22222233456799999999887765 578999999985421 11111111
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch----------hhhHhhcCCCC----Ccc
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG----------QLVAEVMDPNI----TTI 464 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~----------~~~~~~~~~~~----~~i 464 (546)
. .......+..++|+|+ |.... +..-++.|.+|++.+. +.+.++..|.. ..-
T Consensus 325 ~--~v~vG~gP~h~aF~~d---------G~aY~---t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 325 A--EPELGLGPLHTAFDGR---------GNAYT---SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp E--CCBCCSCEEEEEECTT---------SEEEE---EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred E--EcCCCCCcceEEECCC---------CeEEE---EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 1 2233445678899998 42222 3456688999999773 33444443321 111
Q ss_pred cceeeecCCCcEEEEec--C-CcE-----------EEEcCCCCC
Q 009022 465 SPVNKLHPRDDVLASGS--S-RSI-----------FIWRPKEKS 494 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgs--d-g~i-----------~vwd~~~~~ 494 (546)
..+ .++|||++|+++. . .++ .|+|+..++
T Consensus 391 ~g~-t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 391 MGE-TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTT-STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cce-EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 233 5789999999954 2 344 889996555
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.01 E-value=2.5e-07 Score=86.37 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=120.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc---CCCceEEEEEecCCCCEEEEEeC------CCeEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---HSCIVNNIRFNPTNDGTVYAASS------DGTVS 240 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~------dg~i~ 240 (546)
...|.+++|+|+| +++++. .+ .|.+||..++......... ....+..++++|+ ++++++... .+.|.
T Consensus 89 ~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEE
Confidence 4579999999999 666654 33 5999998877654332111 1246889999998 776665432 24566
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCC--CC-CCCc-ceE-EeecCCCcE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDAR--TN-SRSG-EAI-LIHRKGSKV 314 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~~-~~~-~~~~~~~~i 314 (546)
.++ +++....... . .....++|+|+++.++++ +.++.|++|++. ++ .... ... ........+
T Consensus 165 ~~~--~g~~~~~~~~-~---------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p 232 (326)
T 2ghs_A 165 HVA--KGKVTKLFAD-I---------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 232 (326)
T ss_dssp EEE--TTEEEEEEEE-E---------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred EEe--CCcEEEeeCC-C---------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC
Confidence 666 4543322211 0 136789999999877655 456899999986 44 3221 111 111223457
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEe-CCCCEEEEEeCC
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFS-PSGSKILTTSQD 377 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~-p~~~~l~s~s~d 377 (546)
..+++.+ +++++++....+.|.+|+.. .+ .+..+ .+...+++++|+ |++..|++++..
T Consensus 233 ~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~---~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 233 DGSVCDA-EGHIWNARWGEGAVDRYDTD-GN---HIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECT-TSCEEEEEETTTEEEEECTT-CC---EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CeeEECC-CCCEEEEEeCCCEEEEECCC-CC---EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 8899998 88877777677899999973 22 22222 244579999998 888777655543
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=2.7e-08 Score=93.78 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=96.5
Q ss_pred cCCCCEE-EEEeCCCeEEEEECCCC----ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC------CcEEE
Q 009022 224 PTNDGTV-YAASSDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYL 292 (546)
Q Consensus 224 ~~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i 292 (546)
++ .++| +.+..++.|+++|+.+. +....+... .+...........+.++|+| +++++..+ |.|.+
T Consensus 93 ~~-r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IE-RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CC-SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred cc-CCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 66 4554 55666889999999755 444444200 00000001135567788999 76666555 78999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-------------------CCCeEEEEECCCCCCCceeeec
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-------------------NDHFARIWDIRRLEAGSSLCDL 353 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~ 353 (546)
+|..+.+...+..........-+.+.|+| +++.+++.. ....|.+||+.+.+..+.+..
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v- 246 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL- 246 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-
T ss_pred EECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec-
Confidence 99998776554322212112345688899 888888874 368999999986433222221
Q ss_pred C-CCCcEEEEEE--eCCCCEEEEEe------CCCcEEEEECC
Q 009022 354 P-HKRVVNSAYF--SPSGSKILTTS------QDNRLRIWDSI 386 (546)
Q Consensus 354 ~-~~~~v~~~~~--~p~~~~l~s~s------~dg~i~vwd~~ 386 (546)
+ .......|.| +|+++++++++ .+++|.+|...
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 2 1123445655 99999988777 45678887653
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=3.5e-07 Score=80.97 Aligned_cols=203 Identities=9% Similarity=-0.027 Sum_probs=138.3
Q ss_pred cCC--CeEEEEEcCCCCcEEEEEcC--CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 169 HSR--RVTCLEFHPTNNHILLSGDK--KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 169 h~~--~V~~l~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
|.. ....|.|+|++ +++++.+. ++.|+++|+.+++....+..+.......+++.. +.++++.-.++.+.++|.
T Consensus 17 ~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 17 HDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp CCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEET
T ss_pred CCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEEC
Confidence 553 36899999987 66666553 579999999999887776422222233455542 445555556899999999
Q ss_pred CCCceeeeeecC-CCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec--CCCcEEEEEECC
Q 009022 245 ETGLALSLMNVN-PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNP 321 (546)
Q Consensus 245 ~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~p 321 (546)
.+.+.+..+... .. ...++++++.++++..++.|.++|..+.+....+..... .-..++.+.|.
T Consensus 94 ~t~~v~~~i~~g~~~------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 94 RTLSNIKNFTHQMKD------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp TTTEEEEEEECCSSS------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCCcEEEEEECCCCC------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 999999888654 21 122556788888888889999999998776554432221 11136678877
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-----------CCCcEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 009022 322 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----------HKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 322 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~-~l~s~s~dg~i~vwd~~~~ 388 (546)
++..++....++.|.+.|..+++....+..-+ .....+.|+|+|+++ +++++...+.|.+.++...
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 45555555568899999998776544443211 113568999999876 4556667888999988654
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=4.8e-08 Score=92.06 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=134.5
Q ss_pred ccCCCeEEEEEcCCCCcEEEEEcC-----CCcEEEEeCCCCceeEEecc-----cCCCceEEEEEecCCCCEEEEEe---
Q 009022 168 YHSRRVTCLEFHPTNNHILLSGDK-----KGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTNDGTVYAAS--- 234 (546)
Q Consensus 168 ~h~~~V~~l~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~--- 234 (546)
+|...+.+|+|+++| +++++-.. ++.|.+||+.+++....+.. .+...+..++++|+++..+++-.
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 467789999999998 66665433 57899999998875554421 12345689999987344455555
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCC--------CCC------------cccceEEEEecCCCCEEEEEeCCC-cEEEE
Q 009022 235 SDGTVSCTDLETGLALSLMNVNPNGWH--------GPR------------TWRMLYGMDINPEKGVVLVADNFG-FLYLV 293 (546)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~------------~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~ 293 (546)
.++.|.+||+.+++....+..+..... +.. ....+..|+|+|+++.|+++...+ .|+.+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 578999999998876665532111000 000 002368899999999888887665 55555
Q ss_pred eCC---CCCCC----cceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeC
Q 009022 294 DAR---TNSRS----GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 366 (546)
Q Consensus 294 d~~---~~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p 366 (546)
+.. ..... ...+....+......+++++ ++.++++...++.|.+||..+++. ..+....+...+.+++|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGS 300 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECT
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECC
Confidence 532 11100 00001111222456789999 899999988899999999843321 1222112345688999999
Q ss_pred CCCEEEEEeCCCcEEEE
Q 009022 367 SGSKILTTSQDNRLRIW 383 (546)
Q Consensus 367 ~~~~l~s~s~dg~i~vw 383 (546)
++.++++.+..+.+.+|
T Consensus 301 ~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 301 DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TSCEEEEECCGGGSGGG
T ss_pred CCcEEEEeCcccccccc
Confidence 98888887655444333
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=108.56 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=103.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 263 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (546)
.+|++++.|+.|+.||..+++....+. . ..+.+..+..+ +..+++++.||.|+.||..+|+.+..+..+...
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 478899999999999999999888774 2 45666656666 678888889999999999998876655332110
Q ss_pred CcccceE-EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 264 RTWRMLY-GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 264 ~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
.+. +..+. .+..+++++.++.|+.||..+++....... +. ...++| .+..+++++.++.|+.||.+
T Consensus 82 ----~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 82 ----LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSP-STSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp ----HHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSS
T ss_pred ----ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccc-cCCEEEEEecCCEEEEEECC
Confidence 000 00011 345677888899999999999876543311 11 234567 77888888999999999998
Q ss_pred CCCCCceeeecCCCCcEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCCC
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFSPSG---SKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+++..-.+.... .....+.++. ..+++++.+|.|..||..+|+.
T Consensus 149 tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 149 TRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred CCCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 766533322111 1222333322 5677788999999999998875
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.91 E-value=1.1e-07 Score=92.95 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=133.0
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEE-e-cCCCCEEEEEe------------------CCCeE
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF-N-PTNDGTVYAAS------------------SDGTV 239 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~i 239 (546)
++|..++++...++.|.+.|+.+.+....+.......+..+++ . |+ +.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC-CcEEEEecccccccCCCCcccccccccCceE
Confidence 4784455555567789999999998777553334456788888 4 88 88888874 24689
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-------------------------------
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG------------------------------- 288 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------- 288 (546)
.+.|..+.+....+..... ...++++|+|+++++.+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~----------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN----------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTTEEEEEEEESSC----------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCeEEEEEEeCCC----------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 9999999988888765432 34567889999888887543
Q ss_pred -------cEEEEeCCC--CCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCC---------Cce
Q 009022 289 -------FLYLVDART--NSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEA---------GSS 349 (546)
Q Consensus 289 -------~i~i~d~~~--~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---------~~~ 349 (546)
.|.+.|.++ +......+... ....++.++| +++++++++ .+.+|.++|+.+.+. ...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC---CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 467777776 33211122221 1466899999 888766655 688999999975320 012
Q ss_pred eeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 350 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 350 ~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.....-......++|+|+|...++.-.++.|.+||+..
T Consensus 324 ~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 22233445678899999995445666799999999876
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.91 E-value=2.7e-07 Score=87.03 Aligned_cols=201 Identities=10% Similarity=0.042 Sum_probs=129.6
Q ss_pred EEc--CCCCcEEEEEcCCCcEEEEeCCCC----ceeEEec------ccCCCceEEEEEecCCCCEEEEEeCC------Ce
Q 009022 177 EFH--PTNNHILLSGDKKGQVGVWDFYKV----SEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSD------GT 238 (546)
Q Consensus 177 ~~~--~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d------g~ 238 (546)
.++ ++++.++++|..++.|.|+|+.+. +....+. ..-...-..+...|+ + +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCe
Confidence 346 777677788888999999999754 3333331 001123456778898 6 77776655 78
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-------------------CCCcEEEEeCCCCC
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------------------NFGFLYLVDARTNS 299 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~ 299 (546)
|.++|..+.+.+..+....... ..-+.+-|+|+++.+++.. ....|.+||+.+++
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQ------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTC------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEEccCCCCc------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 9999999999998876432210 0134577899999888874 36899999999864
Q ss_pred CCcceEEeecCCCcEEEEEE--CCCCCCEEEEEe------CCCeEEEEECCCCCC--Cceee--------e---cC----
Q 009022 300 RSGEAILIHRKGSKVVGLHC--NPIQPELLLSCG------NDHFARIWDIRRLEA--GSSLC--------D---LP---- 354 (546)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~--~p~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~~--------~---~~---- 354 (546)
....+ .....+.....+.| +| ++.++++++ .+++|.+|....+.. .+.+. . +.
T Consensus 240 ~~~tI-~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 240 RIHSL-TLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EEEEE-ESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred EeeEE-ecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 33322 22111123455555 99 888777666 566887665432110 00100 0 00
Q ss_pred -CCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCC
Q 009022 355 -HKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF 387 (546)
Q Consensus 355 -~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~ 387 (546)
.......|.++|++++|.++.. .+.|.+||+..
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0245778999999999988776 68999999863
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=2.3e-07 Score=81.00 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=127.9
Q ss_pred ccCCC--eEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 168 YHSRR--VTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 168 ~h~~~--V~~l~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.|... ...|.|+ ++ .++.+.+.+| .|+++|+.+++....+.. ..........+.++.++++.-.++.+.+||
T Consensus 38 phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 35443 4789998 56 7778877766 899999999988777642 233333333334244444555689999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC---CcEEEEEEC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCN 320 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~ 320 (546)
..+.+.+..+.....+ +. ++++++.|+.+..++.|.++|..+.+....+.... .+ ..++.+.|.
T Consensus 114 ~~t~~~~~ti~~~~eG----------~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~ 180 (262)
T 3nol_A 114 IRNLRQVRSFNYDGEG----------WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV 180 (262)
T ss_dssp TTTCCEEEEEECSSCC----------CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE
T ss_pred CccCcEEEEEECCCCc----------eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE
Confidence 9999999988765322 22 34577888887778899999999887665443322 11 235567776
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC----------CCCcEEEEEEeCCCCEEEEEeC
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP----------HKRVVNSAYFSPSGSKILTTSQ 376 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~l~s~s~ 376 (546)
++.+++....+..|.+.|..+++....+..-+ .....+.|+|+|+++.|++.+.
T Consensus 181 --~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 56666666578899999998776544443211 1245689999997776666554
No 237
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.88 E-value=2.6e-06 Score=74.96 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=136.4
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
+.+.+-.+.+..|+|+|++..++++...++.|...|.. +.....+...-....-.|++.++ +.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD-NQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST-TEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC-CEEEEEECCCCcEEEEE
Confidence 35666667899999999876777778888999999988 55555543222346788888887 66666666678899998
Q ss_pred CCCCcee---eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC--CCCCcceEEe-----ecCCCc
Q 009022 244 LETGLAL---SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAILI-----HRKGSK 313 (546)
Q Consensus 244 ~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~-----~~~~~~ 313 (546)
+.....+ ....... ...........|+|+|.++.|+++.......+|.+.. .......... ...-..
T Consensus 98 v~~~~~i~~~~~~~~~~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPL---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp ECTTCCEEEEEEEECCC---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred cCCCCeeeeeeeecccc---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 8755432 2222211 1111223478999999998777776655555555431 1101111100 011235
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec-CC------CCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH------KRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~------~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+.+++++|..+.+++.......|.++|... +....+... +. -.....|+|.++|+++++ +..+.+++|.-
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 789999997777888888888999999753 221222111 11 135689999999986555 67776776653
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=7.3e-10 Score=105.47 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEE
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 306 (546)
+..+++++.||.|+.||..+|+.+..+.. .. +.+..+..++..+++++.+|.|+.||..+++......
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~----------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~- 76 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP----------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP- 76 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CC----------SCCCC-----CCEEECTTTCCEEEC-----CCSEECS-
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CC----------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-
Confidence 67899999999999999999999888765 11 2233344567778888899999999998876543221
Q ss_pred eecCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 307 IHRKGSKVV-GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 307 ~~~~~~~i~-~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
.... ..+. ...+. .+..+++++.++.|+.||..+++....+. .+ . ...++|++..|++++.++.|+.||.
T Consensus 77 ~~~~-~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~--~~-~---~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 77 FTIP-ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLS--SA-F---ADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CCHH-HHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCS
T ss_pred ccCc-cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEec--CC-C---cccccccCCEEEEEecCCEEEEEEC
Confidence 1100 0010 00111 23467778889999999998766532221 11 1 2345678888889999999999999
Q ss_pred CCCCC
Q 009022 386 IFGNL 390 (546)
Q Consensus 386 ~~~~~ 390 (546)
.+|+.
T Consensus 148 ~tG~~ 152 (369)
T 2hz6_A 148 KTREL 152 (369)
T ss_dssp SSSSC
T ss_pred CCCCE
Confidence 88765
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.85 E-value=2.1e-07 Score=96.53 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=98.9
Q ss_pred cCCCceEEEEEecCCCCEEEEEe-C----CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAAS-S----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 286 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 286 (546)
+|...+..++|+|+ +++|+.+. . ...|++||+.+++.+... ... .....++|+ |++.|+.+..
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~---------~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD---------VKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE---------EESCCCEEE-TTTEEEEEES
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC---------ceeccEEEe-CCCEEEEEEe
Confidence 35567888999999 87777433 2 257999999999865431 110 012467899 9999999887
Q ss_pred CC-------------cEEEEeCCCCCCCcceEEe-ec-CCCcEEEEEECCCCCCEEEEEeC----CCeEEEEECCCCCCC
Q 009022 287 FG-------------FLYLVDARTNSRSGEAILI-HR-KGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAG 347 (546)
Q Consensus 287 dg-------------~i~i~d~~~~~~~~~~~~~-~~-~~~~i~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~ 347 (546)
+. .|++|++.+.......+.. .. +...+..+.|+| ++++|+.... .+.|+++|+.+....
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 74 3999999876543222221 12 233578899999 8887755432 358999999764321
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEEeC-C---CcEEEEECCC
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTTSQ-D---NRLRIWDSIF 387 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-d---g~i~vwd~~~ 387 (546)
......+....... |++++..|+..+. + +.|.++++.+
T Consensus 273 -~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 273 -LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp -CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred -eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 11222344444444 5665555544332 2 3455555543
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=6.4e-06 Score=74.31 Aligned_cols=202 Identities=10% Similarity=0.036 Sum_probs=126.4
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+.+++|++++.+++++-...+.|.++++......... .........+++.|.++.++++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 357799999976567777777889999999765543333 2223467899999973445555556789999998754322
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
...... ......++++|++..|+.+.. .+.|..+++..... .. ...........++++| ++..|
T Consensus 115 ~~~~~~---------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~-~~~~~~~~P~gia~d~-~~~~l 181 (267)
T 1npe_A 115 VLFDTG---------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RI-LAQDNLGLPNGLTFDA-FSSQL 181 (267)
T ss_dssp EEECSS---------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EE-EECTTCSCEEEEEEET-TTTEE
T ss_pred EEEECC---------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EE-EEECCCCCCcEEEEcC-CCCEE
Confidence 221111 013688999997666666553 46888888764321 11 1112223678999999 65544
Q ss_pred -EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 328 -LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 328 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++-...+.|.++++........ .........++.. .+.++++....+.|.++|..+++.
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~---~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKV---LEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEE---EECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEECCCCEEEEEecCCCceEEE---ecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc
Confidence 5555678999999864221111 1122334566664 344444444568999999987764
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=5e-07 Score=78.84 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=125.8
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
-...|.|+. + .++++.+.+|.|+++|+.+++....+ ......--.+++ .++.++++...++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 347888874 4 78889999999999999999887776 222211223444 435566666678999999999999999
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC---CcEEEEEECCCCCCEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELLL 328 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~ 328 (546)
.+.....+ +.+ +++++.|+.+..++.|.++|..+.+....+.... .+ ..++.+.|. ++.+++
T Consensus 131 ti~~~~eG----------wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~--dG~lya 195 (268)
T 3nok_A 131 TTRYSGEG----------WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA--NGVIYA 195 (268)
T ss_dssp EEECSSCC----------CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE--TTEEEE
T ss_pred EEeCCCce----------eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe--CCEEEE
Confidence 98764332 233 3568888888889999999999887665443222 22 145677776 566666
Q ss_pred EEeCCCeEEEEECCCCCCCceeeec-----------CCCCcEEEEEEeCCCCE-EEEE
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDL-----------PHKRVVNSAYFSPSGSK-ILTT 374 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~p~~~~-l~s~ 374 (546)
....+..|.+.|..+++....+..- ....-.+.|+|+|+++. ++||
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 5557889999999877654444321 12246789999996554 4544
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=3.1e-06 Score=76.42 Aligned_cols=252 Identities=10% Similarity=0.095 Sum_probs=144.1
Q ss_pred EEEEEcCCCcEEEEeCCCCcee----EEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEK----IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
+|+.+.. +.|+.+++...... ..+.......+..++|++.++.++++-...+.|..+++........+....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--- 78 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--- 78 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC---
Confidence 3444333 47888888764321 111111234578999999734555555567899999998664433221110
Q ss_pred CCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeC---CCeE
Q 009022 261 HGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFA 336 (546)
Q Consensus 261 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i 336 (546)
.....+++++++..|+.+ ...+.|.++++..... .. ...........++++| ++..|+.+.. .+.|
T Consensus 79 ------~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~~-~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 79 ------GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--RV-LFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp ------CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE-EECSSCSSEEEEEEET-TTTEEEEEECCSSSCEE
T ss_pred ------CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--EE-EEECCCCCccEEEEee-CCCEEEEEECCCCCcEE
Confidence 137889999976655555 4567999999865321 11 1111223678999999 5555544443 4688
Q ss_pred EEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEec
Q 009022 337 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 415 (546)
Q Consensus 337 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (546)
..+++... ....+.. ........++++|++..|+. ....+.|.++++..... ..+.. ....+..++..
T Consensus 149 ~~~~~dg~-~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~-----~~~~P~gi~~d 217 (267)
T 1npe_A 149 ETSHMDGT-NRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLE-----GLQYPFAVTSY 217 (267)
T ss_dssp EEEETTSC-CCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----EEEEE-----CCCSEEEEEEE
T ss_pred EEEecCCC-CcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----EEEec-----CCCCceEEEEe
Confidence 88887532 2122211 22345789999997665554 44568899999864321 00110 11112222221
Q ss_pred CCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCc
Q 009022 416 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 475 (546)
Q Consensus 416 p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~ 475 (546)
. +.++. +....+.|.+++..+++.+..+..........+ ++.|++.
T Consensus 218 ~----------~~lyv---a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi-~~~~~~~ 263 (267)
T 1npe_A 218 G----------KNLYY---TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI-TIALSQC 263 (267)
T ss_dssp T----------TEEEE---EETTTTEEEEEETTTTEEEEEECCSSCCCCCCE-EEECSCC
T ss_pred C----------CEEEE---EECCCCeEEEEeCCCCCceEEEcccccccccee-eecCccC
Confidence 1 22222 233457899999999988877754332234556 6777764
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=2.2e-06 Score=74.26 Aligned_cols=189 Identities=14% Similarity=0.057 Sum_probs=126.1
Q ss_pred ccCC--CeEEEEEcCCCCcEEEEEcCCC--cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 168 YHSR--RVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 168 ~h~~--~V~~l~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.|.. -...|.|++ + .++.+.+..| .|+++|+.+++....+.......--.+++.. +.++...-.++.+.+||
T Consensus 16 phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEE
T ss_pred CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCCEEEEEE
Confidence 4543 466899987 4 6777777754 8999999999887776422221113344432 45555566689999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC---CcEEEEEEC
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCN 320 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~ 320 (546)
..+.+.+..+.....+ +.+ .+++..|+++..++.|.++|..+.+....+... .++ ..++.+.|.
T Consensus 92 ~~tl~~~~ti~~~~~G----------wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 92 LATLTPRARFRYPGEG----------WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV 158 (243)
T ss_dssp TTTTEEEEEEECSSCC----------CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE
T ss_pred CCcCcEEEEEeCCCCc----------eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe
Confidence 9999999988765322 233 356777888888999999999987765544322 121 245667776
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-----------CCCcEEEEEEeCCCCEEEEEe
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----------HKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~s~s 375 (546)
++.+++....+..|.+.|..+++....+..-+ .....+.|+++|+++.|++.+
T Consensus 159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 56666555568899999998766544333211 123578999999766655554
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.75 E-value=5.1e-07 Score=84.47 Aligned_cols=268 Identities=12% Similarity=0.065 Sum_probs=149.7
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
+...+.++.+.++| . |..++.+ |..+|. ++.....+ ...........+. +..|..++.++.|..+|.. ++
T Consensus 58 ~~~~~~~~~~~~~g-~-l~v~t~~--l~~~d~-~g~~~~~~-~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDG-T-IYFGSDK--VYAINP-DGTEKWRF-DTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGEEEECCEETTTT-E-ECCSSCE--EEEECC-CGGGGGGS-CC-----CCEEEE---TTEEEEECTTSEEEEECTT-SC
T ss_pred CCCcccceEEecCC-c-EEEecCc--EEEECC-CCcEEEEE-ECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CC
Confidence 33456777787777 4 5555554 888886 44433322 1122222333333 4567778888999999998 77
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
.......... .+.++...+++. +.+++.++.|..||.. +..... .......+.++...+ ++.+++
T Consensus 128 ~~~~~~~~~~---------~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~d~-~g~l~v 192 (330)
T 3hxj_A 128 EKWRFKTKKA---------IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR---FKTNDAITSAASIGK-DGTIYF 192 (330)
T ss_dssp EEEEEECSSC---------CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEECT-TCCEEE
T ss_pred EEEEEcCCCc---------eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE---EecCCCceeeeEEcC-CCEEEE
Confidence 6655543322 244455666666 6667788999999987 443322 122223456666765 566444
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 408 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 408 (546)
++ +.|..|| .++.. ..........+.++...+++. |.+++.++.|..++. +++.... . . ......
T Consensus 193 -~t--~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~----~-~-~~~~~~- 257 (330)
T 3hxj_A 193 -GS--DKVYAIN-PDGTE--KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR----F-K-TGKRIE- 257 (330)
T ss_dssp -ES--SSEEEEC-TTSCE--EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE----E-E-CSSCCC-
T ss_pred -Ee--CEEEEEC-CCCcE--EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE----e-e-CCCCcc-
Confidence 44 7899999 43322 222223345677888888775 555666788888874 3332110 0 0 000000
Q ss_pred ceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEE
Q 009022 409 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIW 488 (546)
Q Consensus 409 ~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vw 488 (546)
......++ |.+. .++.++.|..+|. +++.+..+.... ..+.++ ...++|++++.+.+|.+++.
T Consensus 258 -~~~~~~~~---------g~l~----v~t~~ggl~~~d~-~g~~~~~~~~~~-~~~~~~-~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 258 -SSPVIGNT---------DTIY----FGSYDGHLYAINP-DGTEKWNFETGS-WIIATP-VIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp -SCCEECTT---------SCEE----EECTTCEEEEECT-TSCEEEEEECSS-CCCSCC-EECTTCCEEEECTTSCEEEE
T ss_pred -ccceEcCC---------CeEE----EecCCCCEEEECC-CCcEEEEEEcCC-ccccce-EEcCCCEEEEEcCCCeEEEE
Confidence 01111211 3333 3556677888886 666655554332 445555 56678887665559999988
Q ss_pred cCCCC
Q 009022 489 RPKEK 493 (546)
Q Consensus 489 d~~~~ 493 (546)
.....
T Consensus 321 ~~~~~ 325 (330)
T 3hxj_A 321 FNLEH 325 (330)
T ss_dssp EC---
T ss_pred ecccc
Confidence 76543
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=4.7e-07 Score=84.99 Aligned_cols=215 Identities=8% Similarity=-0.099 Sum_probs=123.2
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEeccc-C-----CCceEEEEEecCCC
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNI-H-----SCIVNNIRFNPTND 227 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~ 227 (546)
.++..-..+ .+.|+|++. +|+++. .++.|.+||+.+.+....+..+ . ......++|+|+ +
T Consensus 60 ~~i~vG~~P--~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD-G 135 (368)
T 1mda_H 60 GHSLGAFLS--LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS-S 135 (368)
T ss_dssp EEEEECTTC--EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT-S
T ss_pred EEEeCCCCC--ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC-C
Confidence 344333345 799999995 455553 3688999999999888776422 0 124568999999 8
Q ss_pred CEEEEEeC--CCeEEE--EECCCCceeeeeecCCCCC---------CCCCcccceEEEE---------------------
Q 009022 228 GTVYAASS--DGTVSC--TDLETGLALSLMNVNPNGW---------HGPRTWRMLYGMD--------------------- 273 (546)
Q Consensus 228 ~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~--------------------- 273 (546)
++|+++.. ...|.+ +|+.+ +..+....... ........+..+.
T Consensus 136 k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v 212 (368)
T 1mda_H 136 ACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred CEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence 88887764 467888 88866 22222110000 0000000000000
Q ss_pred -----ecCCCCEEEEEeCCCcEEEEeCCCCCCC-cceEEee-----cCC---CcEEEEEECCCCCCEEEEEeC-------
Q 009022 274 -----INPEKGVVLVADNFGFLYLVDARTNSRS-GEAILIH-----RKG---SKVVGLHCNPIQPELLLSCGN------- 332 (546)
Q Consensus 274 -----~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~-----~~~---~~i~~~~~~p~~~~~l~~~~~------- 332 (546)
..+++..++..+. +.|.+.|+...... ....... ... .....+.++| ++..++++..
T Consensus 213 g~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 213 SSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred CCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 1334444444444 77778887543210 0000000 000 0111267899 7776765432
Q ss_pred --CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCCC
Q 009022 333 --DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTTS-QDNRLRIWDSIFGNL 390 (546)
Q Consensus 333 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~s-~dg~i~vwd~~~~~~ 390 (546)
.+.+.++|+.+.+....+. -......|+|+|+++ ++++.. .++.|.++|+.+++.
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~---vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ccCCCEEEEECCCCeEEEEEE---CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 2356699998765433332 223578999999997 456666 589999999998775
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.73 E-value=7e-06 Score=82.48 Aligned_cols=306 Identities=15% Similarity=0.105 Sum_probs=169.5
Q ss_pred EEEEEcC-CCcEEEEeC-CCCceeEEecccCCC----------ceEEEEEecCCCCE----EEEEeCCCeEEEEECCCCc
Q 009022 185 ILLSGDK-KGQVGVWDF-YKVSEKIVYGNIHSC----------IVNNIRFNPTNDGT----VYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 185 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~----l~s~~~dg~i~iwd~~~~~ 248 (546)
.|+.++. ++.|.-+|. .+++.+..+...... ....+++.|. +.. |+.++.|+.|..+|..+|+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~-~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG-DGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC-CSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEec-CCcceeEEEEEcCCCEEEEEECCCCC
Confidence 4555666 788999999 888888776422111 1123556444 444 8888889999999999999
Q ss_pred eeeeeecCCCCCCCCCcccceEE-EEecCCCCEEEEEe------CCCcEEEEeCCCCCCCcceEEeecC-----------
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVAD------NFGFLYLVDARTNSRSGEAILIHRK----------- 310 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------- 310 (546)
.+......... ... .+.+ ..+ .+ ..+++++ .+|.|+.+|..+++...+.......
T Consensus 143 ~~W~~~~~~~~-~~~----~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 143 TVWKVENSDIK-VGS----TLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp EEEEEECCCGG-GTC----BCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred EEEeecCCCCC-ccc----eeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence 98776543210 000 0110 011 13 3455554 3789999999998765433211100
Q ss_pred -----------------------CCcE-EEEEECCCCCCEEEEEeCC----------------CeEEEEECCCCCCCcee
Q 009022 311 -----------------------GSKV-VGLHCNPIQPELLLSCGND----------------HFARIWDIRRLEAGSSL 350 (546)
Q Consensus 311 -----------------------~~~i-~~~~~~p~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~ 350 (546)
+..+ ..+++.+ ...+++.+..+ +.|..+|..+++..-.+
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 0000 1345556 55666666554 37999999876553222
Q ss_pred eecCCC--------CcEEEEEEe-CCC---CEEEEEeCCCcEEEEECCCCCCCCCCcce----------------eec--
Q 009022 351 CDLPHK--------RVVNSAYFS-PSG---SKILTTSQDNRLRIWDSIFGNLDSPSREI----------------VHS-- 400 (546)
Q Consensus 351 ~~~~~~--------~~v~~~~~~-p~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------------~~~-- 400 (546)
....|. .++. +... .+| ..++.++.+|.+.++|..+|+++...... +..
T Consensus 295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 222332 1222 2232 467 56778889999999999999864321100 000
Q ss_pred -------------cCCcccCCceeEEecCCCCCCceeEE---------------ee-eeee---cCC--CC------cCc
Q 009022 401 -------------HDFNRHLTPFRAEWDPKDPSESLAVI---------------GR-YISE---NYN--GA------ALH 440 (546)
Q Consensus 401 -------------~~~~~~~~~~~~~~~p~~~~~~~~~~---------------g~-~~~~---~~~--g~------~d~ 440 (546)
....+...--.++++|......+... |. ++.. .+. .+ ..+
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 00000000012445554221111100 00 0000 000 11 458
Q ss_pred ceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 441 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
.|..||+.+|+.+.+..... ..... .+...+.+|+.|+ ||.|+.||..+|+++.+++.+.
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEEEEECCCCCEEeEecCCC-CccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 89999999999877664221 11111 2334567777788 9999999999999998887554
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=5e-06 Score=73.63 Aligned_cols=157 Identities=11% Similarity=0.035 Sum_probs=101.7
Q ss_pred ceEEEEEecCCCCEEEEEeC--CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE-EeCCCcEEE
Q 009022 216 IVNNIRFNPTNDGTVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYL 292 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i 292 (546)
....+.|+|+ +.++++.+. ++.|.++|+.+++.+..+...... ....+++. ++.|+. .-.++.+.+
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~--------fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY--------FGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--------CEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--------ceEEEEEe--CCEEEEEEecCCEEEE
Confidence 3578999998 655555543 579999999999999887754322 13345554 444444 456789999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC---CCcEEEEEEeCCCC
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFSPSGS 369 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~ 369 (546)
+|..+.+....+ ... .. .-.. +++ ++..++++..++.|.++|..+.+....+..-.. -..++.+.|. ++.
T Consensus 91 iD~~t~~v~~~i-~~g-~~-~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 91 YDRRTLSNIKNF-THQ-MK-DGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EETTTTEEEEEE-ECC-SS-SCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EECCCCcEEEEE-ECC-CC-CeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 999987665433 222 11 1123 444 556666666789999999987665444432211 1246788887 675
Q ss_pred EEEEEeCCCcEEEEECCCCCC
Q 009022 370 KILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+++....++.|.+.|..+++.
T Consensus 164 lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCE
T ss_pred EEEecCCCCeEEEEECCCCcE
Confidence 555555578899999877653
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=3.6e-06 Score=84.64 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=166.7
Q ss_pred EEEEEcC-CCcEEEEeC-CCCceeEEecccCCCc----------eEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeee
Q 009022 185 ILLSGDK-KGQVGVWDF-YKVSEKIVYGNIHSCI----------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 252 (546)
Q Consensus 185 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (546)
.|+.++. ++.|.-+|. .+++.+..+....... -..++.. +..++.++.++.|..+|..+|+.+..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 4555666 788999999 8888877764221111 0123332 56788888899999999999999887
Q ss_pred eecCCCCCCCCCcccceE-EEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecC---------------
Q 009022 253 MNVNPNGWHGPRTWRMLY-GMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK--------------- 310 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------- 310 (546)
....... ... .+. +... .+..+++++. ++.|+.+|..+++...+.......
T Consensus 141 ~~~~~~~-~~~----~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 141 VEVCDPK-VGS----TLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp EECCCGG-GTC----BCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred ecCCCCC-ccc----eeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 7653210 000 011 0001 1345666654 789999999998765433211100
Q ss_pred -------------------CC-cEEEEEECCCCCCEEEEEeCC----------------CeEEEEECCCCCCCceeeecC
Q 009022 311 -------------------GS-KVVGLHCNPIQPELLLSCGND----------------HFARIWDIRRLEAGSSLCDLP 354 (546)
Q Consensus 311 -------------------~~-~i~~~~~~p~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 354 (546)
+. ....+++.+ ....++.+..+ +.|..+|..+++..-.+....
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 00 001345666 44555555432 358999998765422222112
Q ss_pred CC--------CcEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCCCCCCCcc----------------eeec-------
Q 009022 355 HK--------RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSRE----------------IVHS------- 400 (546)
Q Consensus 355 ~~--------~~v~~~~~~p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------~~~~------- 400 (546)
|. .++. +...++|+ .++.++.+|.+.++|..+|+++..... .+..
T Consensus 293 ~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 293 HDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp TCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred CcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 21 2221 22234674 677888899999999999886432110 0000
Q ss_pred --------cCCcccCCceeEEecCCCCCCceeEEeeeee------------ecCCC--------------CcCcceEEEE
Q 009022 401 --------HDFNRHLTPFRAEWDPKDPSESLAVIGRYIS------------ENYNG--------------AALHPIDFID 446 (546)
Q Consensus 401 --------~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~------------~~~~g--------------~~d~~i~iwd 446 (546)
....+...-..++++|......+.. ..... ..|.| ..++.|..||
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~-~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D 450 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGL-NHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD 450 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE-ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEc-hhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence 0000000001234555432111111 00000 00111 2468899999
Q ss_pred CCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccc
Q 009022 447 ITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 503 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~ 503 (546)
+.+|+.+.++.... .+... .+...+.+|+.++ ||.|+.||..+|+++.++....
T Consensus 451 ~~tG~~~W~~~~~~--~~~~~-~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 451 LTTGKAKWTKWEKF--AAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp TTTCCEEEEEEESS--CCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCCEEEEecCCC--Cccce-eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 99999877765332 12222 2334566777788 9999999999999998887554
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=7.8e-06 Score=82.29 Aligned_cols=306 Identities=11% Similarity=0.053 Sum_probs=166.3
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCCCc--------eEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI--------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
|+.++.++.|.-+|..+++.+..+....... ...+++. +..++.++.++.|..+|..+|+.+.......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 4444443348889999988887764221110 0222332 5678888899999999999999988776543
Q ss_pred CCCCCCCc-ccceEEEEec-CCCC-EEEEEe------CCCcEEEEeCCCCCCCcceEEee---------------c----
Q 009022 258 NGWHGPRT-WRMLYGMDIN-PEKG-VVLVAD------NFGFLYLVDARTNSRSGEAILIH---------------R---- 309 (546)
Q Consensus 258 ~~~~~~~~-~~~v~~~~~~-~~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~---------------~---- 309 (546)
... .... ..++ +.=. .+++ .+++++ .++.|+-+|..+++......... .
T Consensus 148 ~~~-~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 148 HGA-GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp GGG-TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCc-CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 110 0000 0011 1101 1233 555654 37899999999887654221100 0
Q ss_pred -------------------CCCcEEEEEECCCCCCEEEEEeC--------------------C----CeEEEEECCCCCC
Q 009022 310 -------------------KGSKVVGLHCNPIQPELLLSCGN--------------------D----HFARIWDIRRLEA 346 (546)
Q Consensus 310 -------------------~~~~i~~~~~~p~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~ 346 (546)
....-..+++.| ...+++.+.. | +.|..+|..+++.
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred cCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000011345666 5556665552 2 5899999987665
Q ss_pred CceeeecCCC--------CcEEEEEEe-CCCC---EEEEEeCCCcEEEEECCCCCCCCCCcce----------------e
Q 009022 347 GSSLCDLPHK--------RVVNSAYFS-PSGS---KILTTSQDNRLRIWDSIFGNLDSPSREI----------------V 398 (546)
Q Consensus 347 ~~~~~~~~~~--------~~v~~~~~~-p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------------~ 398 (546)
.-.+....|. .++. +... .+|+ .++.++.+|.++++|..+|+++...... +
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 2222221232 1221 2222 4674 7888999999999999998864311100 0
Q ss_pred eccCCc---------------------ccCCceeEEecCCCCCCceeEEeeeeee-------------cCC---------
Q 009022 399 HSHDFN---------------------RHLTPFRAEWDPKDPSESLAVIGRYISE-------------NYN--------- 435 (546)
Q Consensus 399 ~~~~~~---------------------~~~~~~~~~~~p~~~~~~~~~~g~~~~~-------------~~~--------- 435 (546)
....+. +...--.++++|......+. ...++. .+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~--~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP--ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE--EECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe--chhcceeeecccccccCCCceeccceeecCC
Confidence 000000 00000123455543221111 110000 001
Q ss_pred -CCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeeccce
Q 009022 436 -GAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 504 (546)
Q Consensus 436 -g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~~~~ 504 (546)
....+.|..||+.+|+.+.++..+. ..... .....+.+|+.|+ ||.|+.||..+|+++.+++....
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAG--VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSC--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCccc--ceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 1246889999999999877664332 11111 2333567788888 99999999999999998877654
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.67 E-value=9.9e-08 Score=89.37 Aligned_cols=268 Identities=11% Similarity=0.079 Sum_probs=148.6
Q ss_pred EEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 009022 175 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 175 ~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (546)
++.+..++ . |..++.++.|..|| .+++..... ..+...+.++...++ + .|+.++.+ |..+|. +++.+..+.
T Consensus 24 ~~~~d~~g-~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~-g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNG-T-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD-G-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTS-C-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT-T-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCC-e-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC-C-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 34455566 3 66777788899999 776654443 233344566666654 4 45555554 888886 565554433
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.... ......+. +..+.+++.++.|..+|.. +.... ........+.++...+ ++. |..++.++
T Consensus 95 ~~~~---------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~-~g~-l~vgt~~~ 157 (330)
T 3hxj_A 95 TKKA---------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSE-DGT-IYVGSNDN 157 (330)
T ss_dssp C--------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECT-TSC-EEEECTTS
T ss_pred CCCC---------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcC-CCE-EEEEcCCC
Confidence 2211 11122222 6678888888999999987 44322 1122222455566665 555 66677789
Q ss_pred eEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEE
Q 009022 335 FARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAE 413 (546)
Q Consensus 335 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (546)
.|..||.. +.. +... .....+.++.+.+++.+++. + +.|..|| .+++.... .... ......+.
T Consensus 158 ~l~~~d~~-g~~---~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~-------~~~~-~~~~~~~~ 221 (330)
T 3hxj_A 158 YLYAINPD-GTE---KWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWN-------FYAG-YWTVTRPA 221 (330)
T ss_dssp EEEEECTT-SCE---EEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEE-------ECCS-SCCCSCCE
T ss_pred EEEEECCC-CCE---eEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEE-------EccC-CcceeceE
Confidence 99999986 332 2222 23445667777777775544 4 7899999 55543110 0000 01111223
Q ss_pred ecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCCC
Q 009022 414 WDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 493 (546)
Q Consensus 414 ~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~~ 493 (546)
..++ |.+.+ ++.++.|..++. ++..+..+.... ..+..+ .+.+++.+.+...+|.|..++. ++
T Consensus 222 ~~~~---------g~l~v----~t~~~gl~~~~~-~g~~~~~~~~~~-~~~~~~-~~~~~g~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 222 ISED---------GTIYV----TSLDGHLYAINP-DGTEKWRFKTGK-RIESSP-VIGNTDTIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp ECTT---------SCEEE----EETTTEEEEECT-TSCEEEEEECSS-CCCSCC-EECTTSCEEEECTTCEEEEECT-TS
T ss_pred ECCC---------CeEEE----EcCCCeEEEECC-CCCEeEEeeCCC-Cccccc-eEcCCCeEEEecCCCCEEEECC-CC
Confidence 3332 33332 444566777764 455544443332 223333 4666676555444889999996 67
Q ss_pred Cccceeec
Q 009022 494 SELVEQKE 501 (546)
Q Consensus 494 ~~~~~~~~ 501 (546)
+.+..+..
T Consensus 285 ~~~~~~~~ 292 (330)
T 3hxj_A 285 TEKWNFET 292 (330)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEEc
Confidence 76665543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=2.3e-06 Score=86.12 Aligned_cols=267 Identities=11% Similarity=-0.022 Sum_probs=148.8
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccC-C--CceEE-EEEecCCCCEEEEEeC------CCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH-S--CIVNN-IRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.|+.|..+|..+++.+....... . ..+.+ .... +..++.++. ++.|..+|..+|+.+..+.
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE---CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 57777889999999999998887653211 0 02221 1111 345555554 7899999999999988776
Q ss_pred cCCCCCC---CC--------------------------CcccceEEEEecCCCCEEEEEeCC----------------Cc
Q 009022 255 VNPNGWH---GP--------------------------RTWRMLYGMDINPEKGVVLVADNF----------------GF 289 (546)
Q Consensus 255 ~~~~~~~---~~--------------------------~~~~~v~~~~~~~~~~~l~~~~~d----------------g~ 289 (546)
....... .+ ........+++.+....++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 5321100 00 000001235567777777777642 25
Q ss_pred EEEEeCCCCCCCcceEEee-------cCCCcEEEEEECCCCC---CEEEEEeCCCeEEEEECCCCCCCceeeecCC----
Q 009022 290 LYLVDARTNSRSGEAILIH-------RKGSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---- 355 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~-------~~~~~i~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---- 355 (546)
|..+|..+++......... ....++. +...+ ++ ..++.++.+|.++++|..+++..-.... ..
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~-~~~~~w 350 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV-DPAVNV 350 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEES-STTCCS
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc-cCCccc
Confidence 8999999887654332111 0111222 22223 45 3577788899999999977654221111 11
Q ss_pred --------CCcE--------------------------EEEEEeCCCCEEEEEeCC------------------------
Q 009022 356 --------KRVV--------------------------NSAYFSPSGSKILTTSQD------------------------ 377 (546)
Q Consensus 356 --------~~~v--------------------------~~~~~~p~~~~l~s~s~d------------------------ 377 (546)
..++ ..++++|+..+|++.+.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 0111 246788877777776543
Q ss_pred -------------CcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEE
Q 009022 378 -------------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 444 (546)
Q Consensus 378 -------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~i 444 (546)
|.|..||+.+++.... ...........+...+..+. .++.++.|+.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~------------------~~~~~~~~~~~~~t~gg~v~---~g~~dg~l~a 489 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWT------------------KWEKFAAWGGTLYTKGGLVW---YATLDGYLKA 489 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEE------------------EEESSCCCSBCEEETTTEEE---EECTTSEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEE------------------ecCCCCccceeEEECCCEEE---EEcCCCeEEE
Confidence 4566666655543111 00000000111222233333 4778899999
Q ss_pred EECCchhhhHhhcCCCCCcccceeeecCCCcEEEE
Q 009022 445 IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 479 (546)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~s 479 (546)
||..+|+.+.++..........+ .+..+|++++.
T Consensus 490 ~D~~tG~~lw~~~~~~~~~~~p~-~~~~~G~~yv~ 523 (571)
T 2ad6_A 490 LDNKDGKELWNFKMPSGGIGSPM-TYSFKGKQYIG 523 (571)
T ss_dssp EETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEE
T ss_pred EECCCCCEEEEEeCCCCcEeeeE-EEEECCEEEEE
Confidence 99999999988875542222333 45577875554
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.4e-06 Score=89.47 Aligned_cols=269 Identities=14% Similarity=0.102 Sum_probs=154.1
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccCC---CceEE-EEEecCCCCEEEEEeC------CCeEEEEECCCCceeeeee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS---CIVNN-IRFNPTNDGTVYAASS------DGTVSCTDLETGLALSLMN 254 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 254 (546)
.|+.++.|+.|..+|..+++.+..+..... ..+.+ ..+. +..++++.. +|.|..+|..+|+.+..+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV---KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE---CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 577788899999999999998877643211 11111 1111 335555543 5899999999999998876
Q ss_pred cCCC-CCCCC---------------------CcccceEEEEecCCCCEEEEEeCCC-------------------cEEEE
Q 009022 255 VNPN-GWHGP---------------------RTWRMLYGMDINPEKGVVLVADNFG-------------------FLYLV 293 (546)
Q Consensus 255 ~~~~-~~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~ 293 (546)
.... ..... ........+++.+....+++++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 4321 10000 0001123467888888998888766 39999
Q ss_pred eCCCCCCCcceEEeec------CCCcEEEEEECCCCCC---EEEEEeCCCeEEEEECCCCCCCceeeecC----------
Q 009022 294 DARTNSRSGEAILIHR------KGSKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLP---------- 354 (546)
Q Consensus 294 d~~~~~~~~~~~~~~~------~~~~i~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 354 (546)
|..+++........+. ...++....+.. ++. .++.++.+|.++++|..+++....+....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 9999876554322110 011222222222 443 68889999999999998765421111000
Q ss_pred CCC------------------------cEEEEEEeCCCCEEEEEe-----------------------------------
Q 009022 355 HKR------------------------VVNSAYFSPSGSKILTTS----------------------------------- 375 (546)
Q Consensus 355 ~~~------------------------~v~~~~~~p~~~~l~s~s----------------------------------- 375 (546)
... .-..++++|+..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 011267788766665432
Q ss_pred -CCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH
Q 009022 376 -QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA 454 (546)
Q Consensus 376 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~ 454 (546)
.+|.|..||+.+++...... .. .|. ....+...|.++. .|+.++.|++||..+|+.+.
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~-------~~----------~~~-~~~~~~t~gg~vf---~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVP-------YP----------THW-NGGTLSTAGNLVF---QGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEE-------ES----------SSC-CCCEEEETTTEEE---EECTTSEEEEEETTTCCEEE
T ss_pred CccceEEEEeCCCCcEEEEcc-------CC----------CCC-cCceeEeCCCEEE---EECCcccchhhhhhcChhhe
Confidence 22567777777665421100 00 000 0123333354554 57889999999999999998
Q ss_pred hhcCCCCCcccceeeecCCCc-EEEE
Q 009022 455 EVMDPNITTISPVNKLHPRDD-VLAS 479 (546)
Q Consensus 455 ~~~~~~~~~i~~v~~~s~~~~-~l~s 479 (546)
.+..........+ .+..+|+ |++.
T Consensus 494 ~~~~~~~~~~~p~-~~~~~G~~yva~ 518 (668)
T 1kv9_A 494 QFEAQSGIVAAPM-TFELAGRQYVAI 518 (668)
T ss_dssp EEECSSCCCSCCE-EEEETTEEEEEE
T ss_pred EecCCCCcccCce-EEEECCEEEEEE
Confidence 8876532222333 5566776 4444
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=2.2e-05 Score=73.06 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc------------------CCCceEEEEEecCCCCEEEE
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------------------HSCIVNNIRFNPTNDGTVYA 232 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~s 232 (546)
....+++|.++| +++.++..++.|..|+..+.......... ....+..+++.++ ...|+.
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~-~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ-NNQLYI 96 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT-TTEEEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC-CCcEEE
Confidence 345678899998 66778888899999998765432221100 1134788999984 334555
Q ss_pred EeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeC-----------------CCcEEEEe
Q 009022 233 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADN-----------------FGFLYLVD 294 (546)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d 294 (546)
+...+.|..++..++......... .. ........+++.+ +|.+.++-.. .+.|..||
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~-~~----~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSV-DG----VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEE-TT----EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EECCCCEEEEeCCCCEEEEecccC-CC----CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 554556888887765432211110 00 0111367899999 8877666432 36788888
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCCCc--eeeecCCCCcEEEEEEeCCCCEE
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGS--SLCDLPHKRVVNSAYFSPSGSKI 371 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l 371 (546)
..++.... .... ......|+++| +++.|+.+ ...+.|.+|++....... .+.. ..+ ...+++.++|++.
T Consensus 172 ~~~~~~~~-~~~~---~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTL-LLKE---LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEE-EEEE---ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEE
T ss_pred CCCCEEEE-eccC---CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEE
Confidence 76554211 1111 12456799999 88755554 566899999987532221 1111 223 6778888888766
Q ss_pred EEEe
Q 009022 372 LTTS 375 (546)
Q Consensus 372 ~s~s 375 (546)
++..
T Consensus 244 va~~ 247 (322)
T 2fp8_A 244 VSSS 247 (322)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6553
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=6.3e-06 Score=72.02 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=101.5
Q ss_pred ceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEE
Q 009022 216 IVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYL 292 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i 292 (546)
-...|.|+ + +.++.+.+.+| .|+++|+.+++.+..+......+ -..+++ .++.|... -.++.+.+
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F--------geGit~--~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF--------GEGISD--WKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC--------EEEEEE--ETTEEEEEESSSSEEEE
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc--------eeEEEE--eCCEEEEEEeeCCEEEE
Confidence 34788898 5 77777777766 89999999999998887654321 223343 34455554 46889999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCC---CcEEEEEEeCCCC
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK---RVVNSAYFSPSGS 369 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~ 369 (546)
||..+.+...++. .... -..++ + ++..|+.+..++.|.++|..+.+....+...... ..++.+.|. +|.
T Consensus 112 ~D~~t~~~~~ti~-~~~e---G~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 112 WNIRNLRQVRSFN-YDGE---GWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EETTTCCEEEEEE-CSSC---CCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EECccCcEEEEEE-CCCC---ceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 9999877665432 2221 12333 3 5566666666788999999876654444332111 345667776 676
Q ss_pred EEEEEeCCCcEEEEECCCCCC
Q 009022 370 KILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+.+..-.++.|.+.|..+++.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBE
T ss_pred EEEEEccCCeEEEEECCCCcE
Confidence 555555678899988877654
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=4.8e-06 Score=85.74 Aligned_cols=277 Identities=9% Similarity=-0.006 Sum_probs=142.1
Q ss_pred EEEEcC-CCCcEEEEEcCCC-----------cEEEEeCCCCcee--EEecccCCCceEEEEEecCCCCEEEEEeC-CCeE
Q 009022 175 CLEFHP-TNNHILLSGDKKG-----------QVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTV 239 (546)
Q Consensus 175 ~l~~~~-~~~~~l~s~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i 239 (546)
++++.+ ++ ++++.|+.+. .+.+||+.+.... ......+.....++++.++ +.+++.|+. +..+
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-SCEEEECSSSTTCE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC-CCEEEeCCCCCCce
Confidence 556777 66 7888887543 5889998876532 2222223333445777787 888898884 4589
Q ss_pred EEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CC-----CcEEEEeCCCCCCCcce----EEeec
Q 009022 240 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF-----GFLYLVDARTNSRSGEA----ILIHR 309 (546)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~ 309 (546)
.+||..+.+-......+.. + .-.+++..+++++++.|+ .+ ..+.+||..+....... .....
T Consensus 268 ~~yd~~t~~W~~~~~~~~~-----R---~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVA-----R---GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 339 (656)
T ss_dssp EEEEGGGTEEEECCCCSSC-----C---SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred EEecCcCCceeECCCCCcc-----c---cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence 9999988765433221111 1 123455667899999988 34 57899999875421100 00000
Q ss_pred CCCcEEEEEECCCCCCEEEEEeCCC---------eEEEEECCCCCCCceeeecCC-------CCcEEEEEEeC-CCCEEE
Q 009022 310 KGSKVVGLHCNPIQPELLLSCGNDH---------FARIWDIRRLEAGSSLCDLPH-------KRVVNSAYFSP-SGSKIL 372 (546)
Q Consensus 310 ~~~~i~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~p-~~~~l~ 372 (546)
.. . ...+.. ++..++.|+.+| .+..||..+..-......... ...-.++.|.. ++++++
T Consensus 340 ~~-~--~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 340 AD-K--QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp CC-T--TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred cc-c--cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 00 0 011122 445555555443 567888765432111111110 11224455544 778888
Q ss_pred EEeCCC-----------cEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCC-----
Q 009022 373 TTSQDN-----------RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG----- 436 (546)
Q Consensus 373 s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g----- 436 (546)
.|+.++ .|.+||..+...... .............++..|+ |++++.....
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~mp~~R~~~~~~~l~~---------g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVF-----ASNGLYFARTFHTSVVLPD---------GSTFITGGQRRGIPF 481 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE-----CTTCCSSCCBSCEEEECTT---------SCEEEECCBSBCCTT
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE-----ccCCCCCCcccCCeEECCC---------CCEEEECCcccCcCc
Confidence 887542 577777765432110 0000000000012233333 4444421100
Q ss_pred ---CcCcceEEEECCchhhh--HhhcCCCCCcccceeeecCCCcEEEEec
Q 009022 437 ---AALHPIDFIDITTGQLV--AEVMDPNITTISPVNKLHPRDDVLASGS 481 (546)
Q Consensus 437 ---~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~v~~~s~~~~~l~sgs 481 (546)
..-..+.+||..+++-. ..+..+ ....+...+.|+|++++.|+
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~--R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIV--RVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSC--CCTTEEEEECTTSCEEEEEC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCc--cccccHhhcCCCcEEEecCC
Confidence 11257899998775422 212111 12222224678999999988
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.55 E-value=1.4e-05 Score=80.22 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=93.8
Q ss_pred EEEEcCCCcEEEEeCCCCceeEEecccCC---CceEE-EEEecCCCCEEEEEe------CCCeEEEEECCCCceeeeeec
Q 009022 186 LLSGDKKGQVGVWDFYKVSEKIVYGNIHS---CIVNN-IRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMNV 255 (546)
Q Consensus 186 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 255 (546)
|+.++.|+.|.-+|..+++.+........ ..+.+ ..+. +..+++++ .+|.|+.+|..+|+.+..+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 77788899999999999988776532210 12221 1122 33555554 379999999999999887765
Q ss_pred CCCCCC-------------------------C----CCcccceEEEEecCCCCEEEEEeCCC----------------cE
Q 009022 256 NPNGWH-------------------------G----PRTWRMLYGMDINPEKGVVLVADNFG----------------FL 290 (546)
Q Consensus 256 ~~~~~~-------------------------~----~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i 290 (546)
...... + ......-..+++.+....++.++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 432100 0 00000011355667788888887653 79
Q ss_pred EEEeCCCCCCCcceEEeecCC--------CcEEEEEEC-CCCC---CEEEEEeCCCeEEEEECCCCCC
Q 009022 291 YLVDARTNSRSGEAILIHRKG--------SKVVGLHCN-PIQP---ELLLSCGNDHFARIWDIRRLEA 346 (546)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~--------~~i~~~~~~-p~~~---~~l~~~~~dg~i~iwd~~~~~~ 346 (546)
..+|..+++....... ..+. .++. +... . ++ ..++.++.+|.++++|..+++.
T Consensus 281 ~Ald~~TG~~~W~~q~-~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQK-TPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEEETTTCCEEEEEES-STTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCCceeeEeec-CCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 9999998876543322 1111 1222 2221 2 45 4677788999999999987654
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00015 Score=76.48 Aligned_cols=294 Identities=10% Similarity=0.065 Sum_probs=167.7
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc------cCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN------IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
...|.+|...++| .+.+ |+.++-|.+|+..+......... .....|.++...++ +. |..|+.+ -|.+|+
T Consensus 214 ~~~i~~i~~d~~g-~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~-lWigt~~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPT-RIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQ-NR-LWIGTFN-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEETT-EEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTT-SC-EEEEESS-CEEEEE
T ss_pred CCeeEEEEEcCCC-CEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCC-CC-EEEEeCC-hhheEc
Confidence 4578999888887 4444 44444589999877554333211 12356899988876 55 4445555 588999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe----ecCCCcEEEEEE
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI----HRKGSKVVGLHC 319 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~ 319 (546)
..++............ . .-....|.++...++|. |.+|+.++-|..|+..+..... .... ......|.++..
T Consensus 289 ~~~~~~~~~~~~~~~~-~-~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 289 EGTDSFASYSSNPVEN-G-SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp TTTTEEEEECCCTTST-T-SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEE
T ss_pred CCCCeEEEEecCCCCC-C-CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEE
Confidence 8877654332211110 0 11113589999888877 5556777788888865433210 0000 012346899998
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 393 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~ 393 (546)
.+ ++. |..|+.++-|..|+..+.......... -....|.+++..+++.+|.+|+.++-|.+||..+++...-
T Consensus 365 d~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 365 DK-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp CT-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CC-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 87 665 445677778999998643221110000 0235689999988888567777777899999887653110
Q ss_pred CcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC-----CCCCccccee
Q 009022 394 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-----PNITTISPVN 468 (546)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~v~ 468 (546)
...........+.++...++ |.+.+ |.. +-|.+|+..+++....... .....+.++
T Consensus 443 ----~~~~~~l~~~~v~~i~~d~~---------g~lwi----gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i- 503 (795)
T 4a2l_A 443 ----NQRNSQLVNENVYAILPDGE---------GNLWL----GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL- 503 (795)
T ss_dssp ----CTTTSCCSCSCEEEEEECSS---------SCEEE----EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEE-
T ss_pred ----ecCCCCcCCCeeEEEEECCC---------CCEEE----Eec-CceeEEeCCCCeEEEccccccccccCCceEEEE-
Confidence 00000000111223333333 33333 222 3488899877654322111 112345555
Q ss_pred eecCCCcEEEEecCCcEEEEcCCCCC
Q 009022 469 KLHPRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 469 ~~s~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
...++|++.+... +.|.+|+..++.
T Consensus 504 ~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 504 FRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp EECTTCCEEEEES-SCEEEEEEETTE
T ss_pred EECCCCCEEEEeC-CceEEEeCCCCe
Confidence 6788888777666 668888876554
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=2.1e-05 Score=68.70 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=102.9
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 295 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 295 (546)
-...|.|+. +.++++.+.+|.|+++|+.+++.+..+ .....+ -..+++.. +...++.-.++.+.+||.
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F--------geGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF--------AEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC--------EEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc--------eeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 347888873 678888888899999999999998887 554321 23344432 344444557899999999
Q ss_pred CCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC---CCcEEEEEEeCCCCEEE
Q 009022 296 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~ 372 (546)
.+.+...++. .... -..++ + ++..|+.+..++.|.++|..+.+....+....+ -..++.+.|. +|.+++
T Consensus 124 ~Tl~~~~ti~-~~~e---GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 124 MPPQRERTTR-YSGE---GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp TTTEEEEEEE-CSSC---CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred CcCcEEEEEe-CCCc---eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 9877665432 2221 13444 3 567777777799999999987665444433222 2245677876 676555
Q ss_pred EEeCCCcEEEEECCCCCC
Q 009022 373 TTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 373 s~s~dg~i~vwd~~~~~~ 390 (546)
..-..+.|.+.|..+++.
T Consensus 196 nvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp EETTCSEEEEECTTTCBE
T ss_pred EECCCCeEEEEeCCCCcE
Confidence 554677888888877653
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=1.6e-05 Score=79.93 Aligned_cols=280 Identities=11% Similarity=0.054 Sum_probs=152.7
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEecccC-C--CceE-EEEEecC--CCC-EEEEEe------CCCeEEEEECCCCceee
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH-S--CIVN-NIRFNPT--NDG-TVYAAS------SDGTVSCTDLETGLALS 251 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~v~-~~~~~~~--~~~-~l~s~~------~dg~i~iwd~~~~~~~~ 251 (546)
.|+.++.++.|.-+|..+++.+....... . ..+. ......+ +++ .+++++ .+|.|..+|..+|+.+.
T Consensus 119 ~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 57777889999999999998887763221 0 0111 1111111 122 565554 37899999999999887
Q ss_pred eeecCCCCC-------------CCCC--------------c-----ccceEEEEecCCCCEEEEEeC-------------
Q 009022 252 LMNVNPNGW-------------HGPR--------------T-----WRMLYGMDINPEKGVVLVADN------------- 286 (546)
Q Consensus 252 ~~~~~~~~~-------------~~~~--------------~-----~~~v~~~~~~~~~~~l~~~~~------------- 286 (546)
......... .+.. . ...-..+++.|...++++++.
T Consensus 199 ~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~ 278 (582)
T 1flg_A 199 MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAK 278 (582)
T ss_dssp EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCT
T ss_pred ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccC
Confidence 654321000 0000 0 001124567777788887763
Q ss_pred -------C----CcEEEEeCCCCCCCcceEEeec-------CCCcEEEEEEC-CCCC---CEEEEEeCCCeEEEEECCCC
Q 009022 287 -------F----GFLYLVDARTNSRSGEAILIHR-------KGSKVVGLHCN-PIQP---ELLLSCGNDHFARIWDIRRL 344 (546)
Q Consensus 287 -------d----g~i~i~d~~~~~~~~~~~~~~~-------~~~~i~~~~~~-p~~~---~~l~~~~~dg~i~iwd~~~~ 344 (546)
+ +.|..+|..+++........+. ...++. +... . ++ ..++.++.+|.++++|..++
T Consensus 279 gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 279 GGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5799999999876653321111 011222 2221 2 45 37788899999999998775
Q ss_pred CCCceeeecCCC-----------C--------------------------------cEEEEEEeCCCCEEEEEeC-----
Q 009022 345 EAGSSLCDLPHK-----------R--------------------------------VVNSAYFSPSGSKILTTSQ----- 376 (546)
Q Consensus 345 ~~~~~~~~~~~~-----------~--------------------------------~v~~~~~~p~~~~l~s~s~----- 376 (546)
+..-........ . .-..++++|...++++...
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 542111110000 0 0113566775555555432
Q ss_pred ----------------------------CCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEee
Q 009022 377 ----------------------------DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 428 (546)
Q Consensus 377 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~ 428 (546)
+|.|..||+.+++..-.... . .|. ....+...|.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~-----~------------~~~-~~g~~~tagg 498 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE-----H------------LPL-WAGVLATAGN 498 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE-----S------------SCC-CSCCEEETTT
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC-----C------------CCC-cccceEeCCC
Confidence 45666677666654211000 0 010 1122333344
Q ss_pred eeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeecCCCcE-EEEec--CCcEEEE
Q 009022 429 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV-LASGS--SRSIFIW 488 (546)
Q Consensus 429 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s~~~~~-l~sgs--dg~i~vw 488 (546)
++. .|+.|+.|+.||..+|+.+.++..........+ .|..+|+. +++.+ .|.+-+|
T Consensus 499 lvf---~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~-~y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 499 LVF---TGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI-TWEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEE---EECTTSEEEEEETTTCCEEEEEECSSCCCSCCE-EEEETTEEEEEEEECCCSHHHHH
T ss_pred EEE---EECCCCcEEEEECCCCCEEEEecCCCCcccCce-EEEECCEEEEEEEccCCCccccc
Confidence 444 578899999999999999988876542222334 67778874 44433 3434444
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.47 E-value=0.00018 Score=75.97 Aligned_cols=294 Identities=10% Similarity=0.048 Sum_probs=165.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-----ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-----NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
...|.+|...++| . |-.|+.++-|.+|+..+........ ......|.++...++ + .|..|+.++-|..|+.
T Consensus 309 ~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQG-G-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTS-C-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECT
T ss_pred CCcEEEEEEeCCc-C-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcC
Confidence 3579999999998 4 5566677779999876543322211 012456888888775 4 4666777777999998
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE-EeecCCCcEEEEEECCCC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~ 323 (546)
.++............... -....|.++...+++..|.+|+.++-|..|+..+++...-.. ........|.++...+ +
T Consensus 385 ~~~~~~~~~~~~~~~~~~-l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~ 462 (795)
T 4a2l_A 385 ITQRFTSYTLQEDESARG-IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-E 462 (795)
T ss_dssp TTCCEEEECCC------C-CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-S
T ss_pred CCCcEEEEecCCCCcccC-CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-C
Confidence 877654332111000000 011258899988888867778877789999988754211000 0001234689999887 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCceeeec-----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCccee
Q 009022 324 PELLLSCGNDHFARIWDIRRLEAGSSLCDL-----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 398 (546)
Q Consensus 324 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 398 (546)
+.+.+.. . +.|.+|+..+.... .+... -....|.++...++|.+.+.. . +-|..|+..+++. . ....
T Consensus 463 g~lwigt-~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~-~~~~- 534 (795)
T 4a2l_A 463 GNLWLGT-L-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-Q-KASI- 534 (795)
T ss_dssp SCEEEEE-S-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-E-ECCC-
T ss_pred CCEEEEe-c-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-E-EecC-
Confidence 6655544 4 45888997643221 11100 123578999998888766544 4 5588898876543 1 0000
Q ss_pred eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhH--hhcCCCCCcccceeeecCCCcE
Q 009022 399 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA--EVMDPNITTISPVNKLHPRDDV 476 (546)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~v~~~s~~~~~ 476 (546)
............++...++ |.+.+ |... -|..|+..+++... ...+-....+.++ ...++|++
T Consensus 535 ~~~~~l~~~~i~~i~~d~~---------g~lWi----gT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i-~~d~~g~l 599 (795)
T 4a2l_A 535 LPVSNVTKLFTNCIYEASN---------GIIWV----GTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGI-LEDSFGRL 599 (795)
T ss_dssp SCSCGGGGSCEEEEEECTT---------SCEEE----EESS-CEEEEETTTTEEEEECGGGTCSCSCEEEE-EECTTSCE
T ss_pred CCCCCCCCCeeEEEEECCC---------CCEEE----EeCC-CceeECCCCCcEEEeCCCCCCchhheEEE-EECCCCCE
Confidence 0000001111223444444 43332 2222 47888877654321 1122223446655 67788887
Q ss_pred EEEecCCcEEEEcCCCC
Q 009022 477 LASGSSRSIFIWRPKEK 493 (546)
Q Consensus 477 l~sgsdg~i~vwd~~~~ 493 (546)
.+++. +.|..|+..++
T Consensus 600 Wi~t~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 600 WLSTN-RGISCFNPETE 615 (795)
T ss_dssp EEEET-TEEEEEETTTT
T ss_pred EEEcC-CceEEEcCCCC
Confidence 77664 55667776654
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.0003 Score=66.93 Aligned_cols=197 Identities=8% Similarity=0.045 Sum_probs=119.2
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.-+|.+..+.+ . |+.+. ...|+.+++......... . ....+..++|.+..+.++++-...+.|..+++.......
T Consensus 78 ~~~C~~~~~~~-~-l~~~~-~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPEP-V-LLFAN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSCC-E-EEEEC-BSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCccccc-e-eEeec-CccceeeccCCCcEEEEe-c-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 44566666644 3 43333 357999998876554444 2 334578999998735555565667899999998765433
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEE-EeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
.+..... ....+++.+.+..|+. -...+.|.++++..... .. ...........|++.|..+.++++-
T Consensus 153 ~~~~~~~---------~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~-l~~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 153 VVSTGLE---------SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KV-LLWQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp EECSSCS---------CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EE-EECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCCC---------CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EE-eecCCCCCCcEEEEEcCCCeEEEec
Confidence 3321111 2567888876555544 45567888888765332 11 2222234678999998444444454
Q ss_pred eCC-CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEE-EEeCCCcEEEEECCC
Q 009022 331 GND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL-TTSQDNRLRIWDSIF 387 (546)
Q Consensus 331 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~s~dg~i~vwd~~~ 387 (546)
... +.|..+++..... ..+. ...-...+.|+|+|++..|+ +-+..+.|..+++..
T Consensus 221 ~~~~~~I~r~~~dG~~~-~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGR-RIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp CSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred cCCCCEEEEEeCCCCCc-EEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 444 7888888863221 1221 12334578999998555554 445567899998764
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.44 E-value=0.00057 Score=64.03 Aligned_cols=200 Identities=8% Similarity=0.051 Sum_probs=121.9
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 248 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (546)
+.+..+|.+..+.. .++++ . ...|+..++........+ . ....+..++|++..+.++++-...+.|..+++....
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~-~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEE-C-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCcccccccCc-eeEee-c-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 34455677777754 44443 3 346888888765544443 2 334578999998735555555567899999998765
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
....+..... ....+++.+.+..|+ +-...+.|.++++..... .. ...........+++.|..+.++
T Consensus 107 ~~~~~~~~~~---------~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~-l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 107 VEEVVSTGLE---------SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KV-LLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp CEEEECSSCS---------CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE-EECTTCSCEEEEEEETTTTEEE
T ss_pred ceEEEeCCCC---------CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EE-EEeCCCCCcceEEEecCcCeEE
Confidence 4333221111 256788987655554 445667899999875432 11 2222234678999999445455
Q ss_pred EEEeCC-CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 009022 328 LSCGND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIF 387 (546)
Q Consensus 328 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~ 387 (546)
++-... +.|..+++..... ..+. ...-...+.|+|+|++..|+.+ +..+.|..+++..
T Consensus 175 ~td~~~~~~I~r~~~dG~~~-~~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGR-RIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEECSSSCEEEEEETTSCSC-EESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeccCCCCEEEEEeCCCCCc-EEEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 555455 7899998863221 1111 1233457899999865555544 4567899999864
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00051 Score=63.39 Aligned_cols=207 Identities=13% Similarity=0.011 Sum_probs=126.8
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC---ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (546)
...+.+++|++.+.+++++-...+.|..+++... .....+..........+++.+.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3467899999876567777777889999998761 2222222222245678999876355556666778999999875
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
......+.... .....+++.|.+..|+.+... +.|..+++..... .. .....-.....|+++|..+
T Consensus 109 ~~~~~~~~~~~---------~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~-~~~~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 109 VKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YS-LVTENIQWPNGITLDLLSG 176 (316)
T ss_dssp SSEEEEEECTT---------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EE-EECSSCSCEEEEEEETTTT
T ss_pred CceEEEEECCC---------CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EE-EEECCCCCceEEEEeccCC
Confidence 44333322111 137889999977766665542 6888888754321 11 1112233678999998334
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.++++-+..+.|..+|+... ....+... ........|++. .+.++++-...+.|..++..+++.
T Consensus 177 ~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 44455556779999998632 22233221 123345678885 455666666678899999876654
No 264
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.42 E-value=7.7e-05 Score=72.11 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=93.4
Q ss_pred ceEEEEEecC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----c
Q 009022 216 IVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----F 289 (546)
Q Consensus 216 ~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~ 289 (546)
....|+|.|+ ....|+.+...+.|+.+++.++........ ......++++++++ |+++...+ .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 4568999983 244555555448999999987776544321 11478999999999 55444321 2
Q ss_pred EEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCC
Q 009022 290 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 369 (546)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 369 (546)
+..++.......... .. .......++++|.++.++++-..++.|+.++..++.....+...+....-..|+|+|+++
T Consensus 209 v~~~~~~~~~~~~~~--~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 209 IYLFTRASGFTERLS--LC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEECGGGTTCCEEE--EE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred EEEEECCCCeecccc--cc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 333333221111111 11 122456788888556666666677889999986443211222223333345799999998
Q ss_pred EEE-EEeCCCcEEEEECC
Q 009022 370 KIL-TTSQDNRLRIWDSI 386 (546)
Q Consensus 370 ~l~-s~s~dg~i~vwd~~ 386 (546)
+|+ +-...+.|+.+++.
T Consensus 286 ~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCCEEEEEeCC
Confidence 554 44556889998865
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00023 Score=62.56 Aligned_cols=166 Identities=10% Similarity=0.097 Sum_probs=105.0
Q ss_pred ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcE
Q 009022 211 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 290 (546)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 290 (546)
.+-...+..++|+|+++.++++...++.|...|+. ++.+..+..... ...-.|++.+++.++++.-.++.+
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------~D~EGIa~~~~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------KDLETIEYIGDNQFVISDERDYAI 93 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--------SSEEEEEECSTTEEEEEETTTTEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--------CChHHeEEeCCCEEEEEECCCCcE
Confidence 45556799999999844555667778999999998 888877755321 137788899888877777677899
Q ss_pred EEEeCCCCCCCc--ceEEe----ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---CCCceeee-----cCCC
Q 009022 291 YLVDARTNSRSG--EAILI----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL---EAGSSLCD-----LPHK 356 (546)
Q Consensus 291 ~i~d~~~~~~~~--~~~~~----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~-----~~~~ 356 (546)
.++++....... ..... .........|+|+| .++.|+++.......||.+... .....+.. ..+.
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 999887654311 11111 11223468999999 6655555555444444444310 11111110 0123
Q ss_pred CcEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 009022 357 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 357 ~~v~~~~~~p-~~~~l~s~s~dg~i~vwd~~ 386 (546)
..+.+++++| .+.+++.+...+.|.++|..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 4578999999 55666666667778888764
No 266
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=0.00014 Score=70.35 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=101.4
Q ss_pred ceEEEEEec-CCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe-------cCCCCEEEEEeCC
Q 009022 216 IVNNIRFNP-TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI-------NPEKGVVLVADNF 287 (546)
Q Consensus 216 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d 287 (546)
....|+|.| +.++++++....+.|++.|+.++........... .......|+| ++++..|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~------~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI------PTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS------SCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc------ccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 457899998 4344555555457799999988776655443211 1124789999 9999977777655
Q ss_pred C-------cEEEEeCCC-CCCCc----ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC-------CCCCC-
Q 009022 288 G-------FLYLVDART-NSRSG----EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR-------RLEAG- 347 (546)
Q Consensus 288 g-------~i~i~d~~~-~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~-------~~~~~- 347 (546)
+ .|.+++... +.... ..+.... ....++++|.++.++++-...+.|+.+|+. +....
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 4 266776433 12211 1222222 456788899556667777788899999986 33320
Q ss_pred ----------ceeeecCCCCcEEEEEEeCCCCEEEE-EeCCCcEEEEEC
Q 009022 348 ----------SSLCDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDS 385 (546)
Q Consensus 348 ----------~~~~~~~~~~~v~~~~~~p~~~~l~s-~s~dg~i~vwd~ 385 (546)
..+...+.......|+|+|++++|+. -+....|+.++.
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 12222344455689999999995444 455678888665
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.00017 Score=66.36 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-C-eEEEEECCCCc
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-G-TVSCTDLETGL 248 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~ 248 (546)
.....++|+++| +++++-...+.|..|+..... ...+. ....+..+++.++ ++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~-~~~~~--~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ-QIHAT--VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE-EEEEE--CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCCce-EEEEe--CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence 467899999998 677777778999999987643 22221 2356889999998 7766655432 2 47777877777
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceE-------EeecCCCcEEEEEECC
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-------LIHRKGSKVVGLHCNP 321 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~i~~~~~~p 321 (546)
.......... .....++..+++..+++-...+.|+.+|...+....... .....-.....| +|
T Consensus 107 ~~~~~~~~~~--------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 107 VETLLTLPDA--------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEEEEECTTC--------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEEEEeCCCc--------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 5443332111 123445555555444444468899999986532100000 000111134555 66
Q ss_pred CCCCEE-EEEeCCCeEEEEECCC-CCC--CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 322 IQPELL-LSCGNDHFARIWDIRR-LEA--GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 322 ~~~~~l-~~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
++..| ++-...+.|..|++.. ... ...+... .....|+++++|+++++....+.|.+++..
T Consensus 177 -dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 177 -FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp -ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred -CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 66544 4555678999999864 221 1111111 235668899999887777777889998864
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00032 Score=73.84 Aligned_cols=293 Identities=6% Similarity=-0.042 Sum_probs=160.9
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec-------------ccCCCceEEEEEecCCCCEEEEEeCC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------------NIHSCIVNNIRFNPTNDGTVYAASSD 236 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~s~~~d 236 (546)
...|.+|...++| . |..|+..+-|.+++..+........ ......|.++...++ + .|..|+.+
T Consensus 257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~-g-~lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF-N-NIWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS-C-CEEEEEBS
T ss_pred CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC-C-CEEEEecC
Confidence 4579999998888 4 5556654568889987654322110 123457888888776 5 46667766
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEE
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 316 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 316 (546)
+-|..|+..+.................-....|.++...+++. |.+|+.++-|..|+..+.....-..........|.+
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 7788998876543322111000000001112588888888776 456666677888987653221100001112347889
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC----CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP----HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
+...+ ++.+. .|+..+.|..|+..+.. +.... ....|.++...+++.+.+ |+. +-|.+|+..+++...
T Consensus 412 i~~d~-~g~lW-igt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 412 SLKDS-EGNLW-FGTYLGNISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp EEECT-TSCEE-EEETTEEEEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred EEECC-CCCEE-EEeccCCEEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence 98876 56544 46666779999875432 22221 345789998888776444 445 569999988765421
Q ss_pred CCcceeeccCC-cccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc---CCCCCccccee
Q 009022 393 PSREIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DPNITTISPVN 468 (546)
Q Consensus 393 ~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~v~ 468 (546)
....... .....+..+...+. |.+.+ |...+-|..|+..+++... +. +-....+.++
T Consensus 484 ----~~~~~~~~~~~~~i~~i~~d~~---------g~lWi----gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i- 544 (781)
T 3v9f_A 484 ----HYDTSNSQLLENFVRSIAQDSE---------GRFWI----GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQI- 544 (781)
T ss_dssp ----EECTTTSSCSCSCEEEEEECTT---------CCEEE----EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEE-
T ss_pred ----cccCcccccccceeEEEEEcCC---------CCEEE----EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEE-
Confidence 0000000 00111223333433 33332 3332347778776554221 11 1122445666
Q ss_pred eecCCCcEEEEecCCcEEEEcCCCCC
Q 009022 469 KLHPRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 469 ~~s~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
...++|.+.++...|.|..|+..+++
T Consensus 545 ~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 545 YRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp EECTTSCEEEEETTEEEEESCTTTCC
T ss_pred EECCCCCEEEEECCCceEEECCCCCc
Confidence 66788887776665655888887654
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.001 Score=63.51 Aligned_cols=207 Identities=12% Similarity=0.006 Sum_probs=129.6
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc---eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 245 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (546)
....+..|+|++.+.+++.+-...+.|+.+++.... ....+..........|++.+.+++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 455788999998765666776677889999987521 12222233445678899998636666666677899999988
Q ss_pred CCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 246 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
.......+.... .....|++.|.+..|+.+.. .+.|...++...... . .....-.....|+++| .
T Consensus 190 g~~~~~l~~~~~---------~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~-~~~~~l~~P~glavd~-~ 256 (400)
T 3p5b_L 190 GVKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDL-L 256 (400)
T ss_dssp TCSEEEEEECSS---------CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--E-EECSSCSCEEEEEEET-T
T ss_pred CCceEEEEeCCC---------CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--E-EEECCCCceEEEEEEe-C
Confidence 665443332211 13788999997777766653 478888888653321 1 1122224688999998 5
Q ss_pred CCEEE-EEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 324 PELLL-SCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 324 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+..|+ +-...+.|..+|+..... ..+... ..-.....|++. .+.++++-...+.|..++..+|+.
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred CCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 55454 445577899999864322 222221 122345567763 445666666778899999777654
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.36 E-value=5.2e-05 Score=79.23 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=110.6
Q ss_pred CeEEEEEc-CCCCcEEEEEcCCC----cEEEEeCCCC-ceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEE
Q 009022 172 RVTCLEFH-PTNNHILLSGDKKG----QVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVS 240 (546)
Q Consensus 172 ~V~~l~~~-~~~~~~l~s~~~d~----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~ 240 (546)
.+...+|| |+|..++++.+.+| +|+++|+.++ +.+... -......+.|+|+ ++.|+....+ ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD-g~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD-HTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS-TTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC-CCEEEEEEECCCCCCCEEE
Confidence 67889999 99954344444333 5999999987 532111 1112457899999 7777666654 3688
Q ss_pred EEECCCCcee--eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCc--ceEEeecCCCc
Q 009022 241 CTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRSG--EAILIHRKGSK 313 (546)
Q Consensus 241 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~--~~~~~~~~~~~ 313 (546)
++++.++... ..+...... ....+.|+|++++|+... ....|+++|+.++.... .. ........
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~--------~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~-l~~~~~~~ 321 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPL--------FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI-VRPREKGV 321 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTT--------CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE-SSCCCTTC
T ss_pred EEECCCCchhcEEEEecCCCc--------eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE-eecCCCCc
Confidence 8888876532 222211111 256788999999988765 34478889988753111 11 11222334
Q ss_pred EEEEEECCCCCCEEEEEeCC----CeEEEEECCCCCCCce-eeecCCCC--cEEEEEEeCCCCEEEEEeCCCc--EEEEE
Q 009022 314 VVGLHCNPIQPELLLSCGND----HFARIWDIRRLEAGSS-LCDLPHKR--VVNSAYFSPSGSKILTTSQDNR--LRIWD 384 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~--~v~~~~~~p~~~~l~s~s~dg~--i~vwd 384 (546)
...+.|+. .+.+++....+ ..|..+++.+...... + +.+.. .+..+.+. .+.++++...++. |.+++
T Consensus 322 ~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 322 RYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred eEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 55566543 33344444333 3677777754211122 2 23333 34555554 3345556666775 44555
Q ss_pred C
Q 009022 385 S 385 (546)
Q Consensus 385 ~ 385 (546)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 4
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.35 E-value=0.00015 Score=67.28 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=119.5
Q ss_pred CCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCceeEEecc---cCCCceEEEEEec-CCCCEEEEEeC----------
Q 009022 171 RRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVSEKIVYGN---IHSCIVNNIRFNP-TNDGTVYAASS---------- 235 (546)
Q Consensus 171 ~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~s~~~---------- 235 (546)
..+.+|++.+ ++ +++++ ...+.|.+++..++........ ........+++.+ + ++++++-..
T Consensus 80 ~~p~gi~~~~~~g-~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYNLQNN-QLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEETTTT-EEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEcCCCC-cEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccce
Confidence 3578999998 66 55544 3345588888775432222111 1123468899999 7 776666432
Q ss_pred -------CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEe
Q 009022 236 -------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILI 307 (546)
Q Consensus 236 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~ 307 (546)
.+.|..|+..+++.......- .....|+++++++.|+++ +..+.|+.|++..... ......
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~----------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~ 225 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKEL----------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVL 225 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEE----------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEE
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCC----------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceE
Confidence 367889998777643322110 125679999999976666 5668999999875432 111111
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeC----------CCeEEEEECCCCCCCceeeec--CC---CCcEEEEEEeCCCCEEE
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGN----------DHFARIWDIRRLEAGSSLCDL--PH---KRVVNSAYFSPSGSKIL 372 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~--~~---~~~v~~~~~~p~~~~l~ 372 (546)
....+ ...+++.+ +++++++... .+.|..+|.. ...+..+ .. ...++++++ .++.+++
T Consensus 226 ~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~----G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v 298 (322)
T 2fp8_A 226 VKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF----GNILEVIPLPPPFAGEHFEQIQE-HDGLLYI 298 (322)
T ss_dssp EECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT----SCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred EeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCC----CCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence 11223 78899999 8887666544 4668888763 2233222 11 234666766 3666666
Q ss_pred EEeCCCcEEEEECCC
Q 009022 373 TTSQDNRLRIWDSIF 387 (546)
Q Consensus 373 s~s~dg~i~vwd~~~ 387 (546)
+....+.|.++++..
T Consensus 299 ~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 299 GTLFHGSVGILVYDK 313 (322)
T ss_dssp ECSSCSEEEEEEC--
T ss_pred eecCCCceEEEeccc
Confidence 666788899998753
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.35 E-value=0.00056 Score=65.10 Aligned_cols=205 Identities=9% Similarity=0.025 Sum_probs=129.5
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
...+..|+|.+.+.+++++-...+.|..+++........+. ........+++.+.++.++++-...+.|.+.++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 34578999998664677777778899999988765444432 22334578899987455666666678899988875443
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-C-CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-F-GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
...+.... .....|++.|.+..|+.+.. . +.|..+++...... . ...........|+++|..+.++
T Consensus 194 ~~l~~~~l---------~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~-~~~~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 194 KVLLWQSL---------EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--I-IADTHLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EEEECSSC---------SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSCEEEEEEEGGGTEEE
T ss_pred EEeecCCC---------CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--E-EEECCCCCeeeEEEeCCCCEEE
Confidence 32221111 13788999987776666543 3 67888887653221 1 1122233578999998344455
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++-+..+.|..+++.... ...+.. ........|++ ..+.++++-...+.|..++..+|+.
T Consensus 262 ~aD~~~~~I~~~d~dG~~-~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 262 WVDAKHHVIERANLDGSH-RKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEETTTTEEEEECTTSCS-CEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEECCCCEEEEEeCCCCe-eEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 555567889999986322 122211 22345677887 3555666666778899998666654
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.0011 Score=61.99 Aligned_cols=204 Identities=9% Similarity=0.030 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+..|+|++.+..++++-...+.|..+++........+. ........+++.+.++.++++-...+.|.+.++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 4578999998665667776778899999988765444432 223445789999864556666666789999998755433
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-CC-CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF-GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
..+.... .....+++.|.+..|+... .. +.|..+++....... ...........|+++|..+.+++
T Consensus 152 ~l~~~~l---------~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 152 VLLWQSL---------EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp EEECTTC---------SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEEEEEETTTTEEEE
T ss_pred EEEeCCC---------CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcceEEEeCCCCEEEE
Confidence 2221111 1368899999766666554 34 788888876532211 11122335789999983444555
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+-...+.|..+++.... ...+.. ........|++. .+.++++-...+.|..++..+|+.
T Consensus 220 aD~~~~~I~~~~~dG~~-~~~~~~-~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 220 VDAKHHVIERANLDGSH-RKAVIS-QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEC-SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EECCCCEEEEEeCCCCc-eEEEEe-CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 55567889999986422 122211 223456677773 555666666678888888666653
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00046 Score=59.72 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=101.3
Q ss_pred CceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEE
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 292 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 292 (546)
.-...+.|++ +.++.+.+..| .|+.+|+.+++.+..+......+ -..+++. .++..+..-.++.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--------geGi~~~-~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--------GAGIVAW-RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--------EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--------eeEEEEe-CCEEEEEEeeCCEEEE
Confidence 4466899986 56666766654 89999999999999887654321 2233443 2334444557899999
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC---CCcEEEEEEeCCCC
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFSPSGS 369 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~ 369 (546)
||..+.+...++. .... -..++. ++..|+.+..++.|.++|..+.+....+....+ -..++.+.|. +|.
T Consensus 90 ~D~~tl~~~~ti~-~~~~---Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 90 YDLATLTPRARFR-YPGE---GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EETTTTEEEEEEE-CSSC---CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EECCcCcEEEEEe-CCCC---ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 9999877655432 2221 234443 455566666688999999987665444433222 1345677775 666
Q ss_pred EEEEEeCCCcEEEEECCCCCC
Q 009022 370 KILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 370 ~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+++..-....|.+.|..+++.
T Consensus 162 lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBE
T ss_pred EEEEECCCCeEEEEECCCCCE
Confidence 555554677899999887664
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.29 E-value=0.00066 Score=62.34 Aligned_cols=227 Identities=10% Similarity=0.013 Sum_probs=127.5
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC--cEEE
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--FLYL 292 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i 292 (546)
.....++|+++ ++++++-..++.|..|+.... ....+... ..+..+++.++++++++..... .|..
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~----------~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN-QQIHATVE----------GKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC-EEEEEECS----------SEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc-eEEEEeCC----------CCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 45678999998 777777767899999998754 33333221 1478999999999666554332 4777
Q ss_pred EeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCcee---------eecCCCCcEEEEE
Q 009022 293 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL---------CDLPHKRVVNSAY 363 (546)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~v~~~~ 363 (546)
++..+++.. .. ...........++..+ .+..+++-...+.|+++|...... ... .....-...+.|
T Consensus 100 ~d~~~g~~~-~~-~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 100 LVKSDGTVE-TL-LTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EECTTSCEE-EE-EECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EcCCCCeEE-EE-EeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc-
Confidence 777665432 11 1111122345555555 454555554688999999753210 111 000111234555
Q ss_pred EeCCCCEEEEE-eCCCcEEEEECCC-CCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcc
Q 009022 364 FSPSGSKILTT-SQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 441 (546)
Q Consensus 364 ~~p~~~~l~s~-s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~ 441 (546)
+|++..|+++ ...+.|.+|++.. +.+.. ...... + ..+-.++++++ |.+.+ +....+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~--~~~~~~--~---~~P~gi~vd~d---------G~l~v---a~~~~~~ 234 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE--PEIFVE--Q---TNIDDFAFDVE---------GNLYG---ATHIYNS 234 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCC--CEEEEE--S---CCCSSEEEBTT---------CCEEE---ECBTTCC
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc--cEEEec--c---CCCCCeEECCC---------CCEEE---EeCCCCe
Confidence 7887766554 4578899999874 33211 111111 0 12334566665 54444 3344578
Q ss_pred eEEEECCchhh--hHhhcCCCCCcccceeeec---CCCcEEEEec
Q 009022 442 IDFIDITTGQL--VAEVMDPNITTISPVNKLH---PRDDVLASGS 481 (546)
Q Consensus 442 i~iwd~~~~~~--~~~~~~~~~~~i~~v~~~s---~~~~~l~sgs 481 (546)
|.+++.. |+. +..+... .....++ +|. |++..|+.++
T Consensus 235 V~~~~~~-G~~~~~~~~~~~-~~~p~~~-a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAEQG-VIGSTAV-AFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEECTT-CCEEEEECGGGT-CTTEEEE-EECCSTTTTTEEEEEE
T ss_pred EEEECCC-CCEEEEeecccc-cCCceEE-EEecccCCCCEEEEEC
Confidence 9999875 544 2223222 1334555 788 8877666554
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=0.00015 Score=75.81 Aligned_cols=159 Identities=10% Similarity=0.002 Sum_probs=94.7
Q ss_pred ceEEEEEe-cCCCCEEEEEeC-CC----eEEEEECCCC-ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-
Q 009022 216 IVNNIRFN-PTNDGTVYAASS-DG----TVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF- 287 (546)
Q Consensus 216 ~v~~~~~~-~~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 287 (546)
.+...+|+ |+ +++|+.+.. +| .|+++|+.++ +.+... . ......+.|+|+++.|+....+
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~----------~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V----------SGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E----------EEECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c----------cCceeeEEEecCCCEEEEEEECC
Confidence 67889999 99 777765433 33 4999999988 532110 0 0013467899999988887654
Q ss_pred ----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCCCce-eeec-CCCCc
Q 009022 288 ----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSS-LCDL-PHKRV 358 (546)
Q Consensus 288 ----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~-~~~~-~~~~~ 358 (546)
..|+++++.++......+...........+.|+| ++++|+..+ ....|+++|+.+...... .... .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 3688888877543222222112223567889999 888877655 244688899876421110 1111 23445
Q ss_pred EEEEEEeCCCCEEEEEeCC--C--cEEEEECCC
Q 009022 359 VNSAYFSPSGSKILTTSQD--N--RLRIWDSIF 387 (546)
Q Consensus 359 v~~~~~~p~~~~l~s~s~d--g--~i~vwd~~~ 387 (546)
..++.|+..+.+++....+ + .|.++++.+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5666665444444444443 2 566666654
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00012 Score=70.65 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=96.6
Q ss_pred ceEEEEEec-CCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-C----c
Q 009022 216 IVNNIRFNP-TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G----F 289 (546)
Q Consensus 216 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~ 289 (546)
....|+|+| + ...|+.+...+.|+.+|+..+....... .. .....|+|++++++|+++... + .
T Consensus 138 ~P~~lavdp~~-~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~---------~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKN-HNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL---------SKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTE-EEEEEEEEBTEEEEEEETTTTEEEEEEC-CC---------SCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCEEEECCCC-CCeEEEEeCCCcEEEEECCCCEEEEEec-CC---------CCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 457889998 4 4455555555889999998776544332 11 147899999999966666542 2 3
Q ss_pred EEEEeCCCCCCCc-ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCC
Q 009022 290 LYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 368 (546)
Q Consensus 290 i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 368 (546)
+.+++.. +.... ..+.. ......++++|.++.++++-...+.|+.|+....... .+...+.......|+|+|++
T Consensus 207 v~~~~~~-g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 207 NYILTRE-SGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp EEEEEGG-GTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSSSSCCEEEEECTTS
T ss_pred EEEEeCC-Cceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCCCCcceeEEEcCCC
Confidence 4444432 22211 11111 2246778899855666666667889999998643211 22222333456789999999
Q ss_pred CEE-EEEeCCCcEEEEECC
Q 009022 369 SKI-LTTSQDNRLRIWDSI 386 (546)
Q Consensus 369 ~~l-~s~s~dg~i~vwd~~ 386 (546)
++| ++-...+.|..++..
T Consensus 282 ~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEECCCCEEEEEeCC
Confidence 955 444567889998765
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.21 E-value=0.0027 Score=60.62 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=108.6
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc----eeeeeecCCCCCCCCCcccc
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL----ALSLMNVNPNGWHGPRTWRM 268 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~ 268 (546)
..|+..++........+ .....+..|+|++..+.++++-...+.|+.+++.... ....+.... ..
T Consensus 92 ~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------~~ 160 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------QA 160 (400)
T ss_dssp TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC---------SC
T ss_pred ceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC---------CC
Confidence 57999998876554444 2456788999998735555555567889999987522 111111111 13
Q ss_pred eEEEEecCCCCEE-EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe-C-CCeEEEEECCCCC
Q 009022 269 LYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-N-DHFARIWDIRRLE 345 (546)
Q Consensus 269 v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~-dg~i~iwd~~~~~ 345 (546)
...|++.+.+..| ++-...+.|.+.++...... . ...........|++.| .+..|+... . .+.|...++....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~--~-l~~~~~~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--T-LFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE--E-EEECSSCCEEEEEEET-TTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceE--E-EEeCCCCCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 7789998855444 44456788999988754321 1 2222333578999999 444444443 2 4788888886322
Q ss_pred CCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIF 387 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~ 387 (546)
. ..+ ....-...+.|+++|.+..|+.+ +..+.|..+|+..
T Consensus 237 ~-~~~-~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 237 I-YSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp C-EEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred c-EEE-EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 1 112 11233567899999866666555 4467899999864
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.17 E-value=0.0042 Score=57.18 Aligned_cols=180 Identities=11% Similarity=0.067 Sum_probs=107.7
Q ss_pred CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC---ceeeeeecCCCCCCCCCcccce
Q 009022 193 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG---LALSLMNVNPNGWHGPRTWRML 269 (546)
Q Consensus 193 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v 269 (546)
..|+..++.+......+. ....+..++|++.++.++++-...+.|..+++... .....+... .. ...
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--~~------~~p 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DI------QAP 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--SC------SCC
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--CC------CCc
Confidence 469999998766554442 34567899999873555556566789999998761 221111110 00 135
Q ss_pred EEEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC-CeEEEEECCCCCCC
Q 009022 270 YGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLEAG 347 (546)
Q Consensus 270 ~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~ 347 (546)
..+++.+.+..|+ +-...+.|.++++..... .. ...........+++.|..+.++++.... +.|..+++.... .
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~ 155 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I 155 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EE--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-e
Confidence 6888887555554 446678999999875321 11 1222234678999998344444444333 688888875211 1
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIF 387 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~ 387 (546)
..+. ...-...+.|+++|++..|+.+ +..+.|..+|+..
T Consensus 156 ~~~~-~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 156 YSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE-ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 1111 1233567899999976666554 4567899999864
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.17 E-value=0.0019 Score=59.44 Aligned_cols=205 Identities=10% Similarity=0.040 Sum_probs=128.2
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+.+|+|.+.+.+++.+-...+.|..+++........+....-.....+++.+.++.++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35778999986546777777788999999887642222112223456789998863566666666789999998754332
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
..+.... .....+++.|.+..|+.+. ..+.|..+++..... . . .....-...+.|+++|..+.+.+
T Consensus 115 ~l~~~~~---------~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~-~-~~~~~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 115 VLFWQEL---------DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F-I-IINSEIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp EEECSSC---------SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E-E-EECSSCSCEEEEEEETTTTEEEE
T ss_pred EEEeCCC---------CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E-E-EEECCCCCccEEEEeccCCEEEE
Confidence 2221111 1368899999777776665 357888888764321 1 1 11122235789999983444444
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
+-+..+.|..+++.... ...+.. +.......+++. .+.++++-...+.|..++..+|+.
T Consensus 183 aD~~~~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 183 ADAKLNFIHKSNLDGTN-RQAVVK-GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEC-SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EECCCCEEEEEcCCCCc-eEEEec-CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 55567889999986322 222221 233445677775 345556655678899999877764
No 281
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0088 Score=62.89 Aligned_cols=298 Identities=9% Similarity=-0.045 Sum_probs=159.3
Q ss_pred CCeEEEEEcC--CCCcEEEEEcCCCcEEEEeCCCCceeEEecc----cCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 171 RRVTCLEFHP--TNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 171 ~~V~~l~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
..|.+|.... +| . |..++.++.|..|+..+......... .....|.++...++ + .|..++.++-|..|+.
T Consensus 115 ~~i~~i~~d~~~~g-~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~ 190 (781)
T 3v9f_A 115 NDVTHITSSVQAGK-G-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAED-G-KLYIGHVEGGLSILSL 190 (781)
T ss_dssp SCEEEEEECSSTTS-E-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEET-T-EEEEEETTTEEEEEET
T ss_pred CcceEEEecCccCC-C-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCC-C-CEEEEecCCCeEEEcC
Confidence 3688998887 77 4 44455345688899876543332110 12345788887765 4 5555666656889998
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe----ecCCCcEEEEEEC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI----HRKGSKVVGLHCN 320 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~i~~~~~~ 320 (546)
.+++........... .. -....|.++...+++.+.+. +.. -|.+||..+.......... ......|.++...
T Consensus 191 ~~~~~~~~~~~~~~~-~~-l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 266 (781)
T 3v9f_A 191 NDKSVKHFVHDPQNP-NS-LPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL 266 (781)
T ss_dssp TTTEEEEECC----------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC
T ss_pred CCCceEeeecCCCCc-cc-CCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC
Confidence 876543321111000 00 00124888888888776654 444 6889998764322111000 1123468999887
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCceee-------ec-----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 321 PIQPELLLSCGNDHFARIWDIRRLEAGSSLC-------DL-----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
+ ++. |..|+..+-|.+++..+........ .. -....|.++...++|. |..|+.++-|..|+..++
T Consensus 267 ~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 267 K-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp T-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred C-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence 6 555 5556665678899986543211111 00 1345699999988876 566777777999988755
Q ss_pred CCCCCCccee--eccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc--CCCCCcc
Q 009022 389 NLDSPSREIV--HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--DPNITTI 464 (546)
Q Consensus 389 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~--~~~~~~i 464 (546)
....-..... ....+ ......++...++ |.+.+ |..++-|.+|+..++....-.. ......|
T Consensus 344 ~~~~~~~~~~~~~~~~l-~~~~v~~i~~d~~---------g~lWi----gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 344 TFHTWSYSPTQMNESSL-SNKVVSSVCDDGQ---------GKLWI----GTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEC----CCCSSCC-SSSCEEEEEECTT---------SCEEE----EEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred cceeeccCccccccCCC-CCcceEEEEEcCC---------CCEEE----EeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 4311000000 00000 0111122333332 33332 4445568889887654322110 1122456
Q ss_pred cceeeecCCCcEEEEecCCcEEEEcCCCCC
Q 009022 465 SPVNKLHPRDDVLASGSSRSIFIWRPKEKS 494 (546)
Q Consensus 465 ~~v~~~s~~~~~l~sgsdg~i~vwd~~~~~ 494 (546)
.++ ...++|.+.+...++.|..++..+++
T Consensus 410 ~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 410 LCS-LKDSEGNLWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp EEE-EECTTSCEEEEETTEEEEEECSSSCE
T ss_pred EEE-EECCCCCEEEEeccCCEEEEcCCCCc
Confidence 666 56677777664436788889887654
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0026 Score=66.04 Aligned_cols=208 Identities=14% Similarity=0.036 Sum_probs=126.5
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCC----ceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
....+..|+|.+...+++++-...+.|+.+++... .....+ .........|++.+.+++++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 34567899999865467777777788999998753 222222 3234556789999874456666667889999999
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 322 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 322 (546)
........+.... .....|++.|...+|+.+.. .+.|...++...... . .....-.....|++.+.
T Consensus 501 dG~~~~~l~~~~l---------~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--~-lv~~~l~~P~GLavD~~ 568 (791)
T 3m0c_C 501 KGVKRKTLFRENG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDLL 568 (791)
T ss_dssp TSSSEEEEEECTT---------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--E-EECSSCSCEEEEEEETT
T ss_pred CCCeEEEEEeCCC---------CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--E-EEeCCCCCceEEEEecC
Confidence 8554433332111 13789999998777766653 367888888653321 1 12222346889999983
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 323 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 323 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.+.++++-...+.|..+++........+.....-.....|++. .+.++++-...+.|...+..+|+.
T Consensus 569 ~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 569 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcc
Confidence 4444444455678999998643222222111122334566664 334455555668888888777653
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.10 E-value=0.00063 Score=65.72 Aligned_cols=198 Identities=11% Similarity=0.132 Sum_probs=114.7
Q ss_pred CeEEEEEcCC--CCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC---C-eEEEEECC
Q 009022 172 RVTCLEFHPT--NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---G-TVSCTDLE 245 (546)
Q Consensus 172 ~V~~l~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g-~i~iwd~~ 245 (546)
....|+|+|+ +.+++++ ...+.|+.++..++...... ........|+|+++ ++++++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECC
Confidence 4568999985 3254444 33388999998776554443 24456889999999 7755544321 1 13333322
Q ss_pred CCcee-eeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 246 TGLAL-SLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 246 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
.+... ..+. .......++++| ++.++++-..++.|+.++..++.....+... ........++|+| +
T Consensus 216 ~~~~~~~~~~----------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dp-d 283 (433)
T 4hw6_A 216 SGFTERLSLC----------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHP-T 283 (433)
T ss_dssp GTTCCEEEEE----------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECT-T
T ss_pred CCeecccccc----------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeC-C
Confidence 21110 0111 011356788999 6666656567788999998765432222111 1122345799999 8
Q ss_pred CC-EEEEEeCCCeEEEEECCC--CCCC--ceeeec-C------------CCCcEEEEEE---------eCCCCEEEEEeC
Q 009022 324 PE-LLLSCGNDHFARIWDIRR--LEAG--SSLCDL-P------------HKRVVNSAYF---------SPSGSKILTTSQ 376 (546)
Q Consensus 324 ~~-~l~~~~~dg~i~iwd~~~--~~~~--~~~~~~-~------------~~~~v~~~~~---------~p~~~~l~s~s~ 376 (546)
++ ++++-...+.|+.+++.. .... ..+... + .-.....+++ .+++.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 87 445555678999988652 1111 111110 1 1123567899 677777777777
Q ss_pred CCcEEEEEC
Q 009022 377 DNRLRIWDS 385 (546)
Q Consensus 377 dg~i~vwd~ 385 (546)
.++|+.++.
T Consensus 364 n~~I~~~~~ 372 (433)
T 4hw6_A 364 SHTVRVLTP 372 (433)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 788999985
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.04 E-value=0.0032 Score=57.88 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=129.9
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee-eeecCCCCCCCCCcccceE
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 270 (546)
...|+..++........+.......+..+.|.+..+.++++-...+.|..+++..+.... .+.... ....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l---------~~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------LSPD 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC---------SCCC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC---------CCcc
Confidence 457999999876411111111223567899998735555666667889999987663221 111110 1256
Q ss_pred EEEecCCCCEEE-EEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCCC
Q 009022 271 GMDINPEKGVVL-VADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG--NDHFARIWDIRRLEAG 347 (546)
Q Consensus 271 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~ 347 (546)
.+++.+.+..|+ +-...+.|.++++..... .. ...........+++.| .+..|+.+. ..+.|..+++.-.. .
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~-l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KV-LFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSS-R 157 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE-EECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EE-EEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCC-e
Confidence 788887555444 445678999999875322 11 1223334678999998 544444444 35788888875321 1
Q ss_pred ceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEE
Q 009022 348 SSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI 426 (546)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 426 (546)
..+. ...-...+.|+|+|++..|+.+ +..+.|..+++.... +..+... ....+..++...+
T Consensus 158 ~~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-----~~~~~~~---~~~~P~glav~~~--------- 219 (318)
T 3sov_A 158 FIII-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-----RQAVVKG---SLPHPFALTLFED--------- 219 (318)
T ss_dssp EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----CEEEECS---CCSCEEEEEEETT---------
T ss_pred EEEE-ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----eEEEecC---CCCCceEEEEeCC---------
Confidence 1221 1223456899999965555544 456789999986422 1111111 1122233333221
Q ss_pred eeeeeecCCCCcCcceEEEECCchhhhHhhcC
Q 009022 427 GRYISENYNGAALHPIDFIDITTGQLVAEVMD 458 (546)
Q Consensus 427 g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 458 (546)
+-|. +-...+.|..++..+|+....+..
T Consensus 220 ~lyw----td~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 220 ILYW----TDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEE----EETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEE----EecCCCeEEEEECCCCCceEEEeC
Confidence 2222 233457788888888876655543
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.00 E-value=0.0044 Score=56.63 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=117.9
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecC---CCC---EEEEEeC---CCeEEEEECC--CCceeee
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT---NDG---TVYAASS---DGTVSCTDLE--TGLALSL 252 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~s~~~---dg~i~iwd~~--~~~~~~~ 252 (546)
.+++.....+-|.|||+ .++.+..+. .+.++.+..-|. ++. ++++... +++|.+|++. ++. +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 35666666788999999 666666652 256777777663 011 2333333 5789999773 433 333
Q ss_pred eecCCCCCCCCCcccceEEEEe--cCC-CC-EEEEEeCCCcEEEEeCC---CCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDI--NPE-KG-VVLVADNFGFLYLVDAR---TNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
+.....+.. .....+..+++ ++. +. ++++...+|.+..|++. .+....+.......+..+-.+...+ ...
T Consensus 116 i~~~~~pv~--t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g 192 (355)
T 3amr_A 116 MTDPDHPIA--TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYG 192 (355)
T ss_dssp CSCTTSCEE--CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTT
T ss_pred ccccccCcC--CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCC
Confidence 311000000 00124667777 674 43 68888889999999884 3323333334444455788889988 778
Q ss_pred EEEEEeCCCeEEEEECCCCC--CCceeeecC---CCCcEEEEEEe--CCCC-EEEEEe-CCCcEEEEECC
Q 009022 326 LLLSCGNDHFARIWDIRRLE--AGSSLCDLP---HKRVVNSAYFS--PSGS-KILTTS-QDNRLRIWDSI 386 (546)
Q Consensus 326 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---~~~~v~~~~~~--p~~~-~l~s~s-~dg~i~vwd~~ 386 (546)
.|+.+-.+..|..|+..... ....+...+ ....+..|++. ++++ +|++++ .++++.+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 88888888777777754221 223343332 22468888885 4555 565555 57899999985
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0019 Score=58.43 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc----C--CCceEEEEE---ecCCCCEEEEEe---------
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI----H--SCIVNNIRF---NPTNDGTVYAAS--------- 234 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~~l~s~~--------- 234 (546)
--+++|.+...+++++.-..++|..|+...+......... . ...+..|.| .|. ++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccc
Confidence 3478898865466666668999999999755433332221 1 113578999 587 77777543
Q ss_pred ----CCCeEEEEECC---CCceeeeeecCCCCCC----CCCcccceEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCc
Q 009022 235 ----SDGTVSCTDLE---TGLALSLMNVNPNGWH----GPRTWRMLYGMDINPEKGVVLVADNF-GFLYLVDARTNSRSG 302 (546)
Q Consensus 235 ----~dg~i~iwd~~---~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~ 302 (546)
.+..|..||+. +++.+....+...... .......+..++..++|+..++++.. +.|..++...... .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-S 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-E
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-e
Confidence 15779999999 7877765543210000 00011247899999999999998887 8888877764321 1
Q ss_pred ceEEe---ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Q 009022 303 EAILI---HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 343 (546)
Q Consensus 303 ~~~~~---~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 343 (546)
..... .......+.|+++| +++.|++....|.|..+|+.+
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred eeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 11110 11112367999999 888888877799999999974
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.0088 Score=62.12 Aligned_cols=196 Identities=11% Similarity=0.087 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCc----
Q 009022 173 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL---- 248 (546)
Q Consensus 173 V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---- 248 (546)
-+|.+..+.. +|+.+. ...|+..++........+ . ....+..|+|.+..+.++++-...+.|+.+++....
T Consensus 387 ~~C~~~~~~p--~Ll~an-~~~Ir~i~l~~~~~~~l~-~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 387 KACKAVGSIA--YLFFTN-RHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCCEETTSCC--EEEEEC-BSSEEEECTTSCCCEEEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred ceeeeccccc--cccccc-ccceeEeeccCCcceeee-c-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 3454444333 333333 356888888766544444 2 445678999998735555666667889999987532
Q ss_pred eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 249 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
....+.... .....|++.+.++.|+.+ ...+.|.+.++..... . . ...........|++.|..+.++
T Consensus 462 ~~~vi~~~l---------~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~-~-l~~~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 462 YDTVISRDI---------QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-K-T-LFRENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp CEEEECSSC---------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-E-E-EEECTTCCEEEEEEETTTTEEE
T ss_pred eeEEEecCC---------CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-E-E-EEeCCCCCcceEEEecCCCCEE
Confidence 122221111 136688998877655555 5678999999875432 1 1 2222333688999999334444
Q ss_pred EEEeCC-CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 009022 328 LSCGND-HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIF 387 (546)
Q Consensus 328 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~ 387 (546)
++-... +.|.+.++..... ..+ ....-...+.|++++.+..|+.+ ...+.|..+++..
T Consensus 530 wtD~g~~~~I~~~~~dG~~~-~~l-v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLNGVDI-YSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEECSSSCEEEEEETTSCCE-EEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EecCCCCCeEEEEecCCCce-EEE-EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 443233 6888888853221 111 11233568899999866655555 4457899998854
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0026 Score=61.64 Aligned_cols=205 Identities=12% Similarity=0.087 Sum_probs=118.1
Q ss_pred CeEEEEEcCC-CCcEEEEEcCCCcEEEEeCCCCceeEEeccc--CCCceEEEEE-------ecCCCCEEEEEeCCC----
Q 009022 172 RVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRF-------NPTNDGTVYAASSDG---- 237 (546)
Q Consensus 172 ~V~~l~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~s~~~dg---- 237 (546)
....|+|.|. +.+++++....+.|++.|+...........+ .......|+| +++ +..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~-G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE-AEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT-TCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC-CCEEEEEeCCCCCcc
Confidence 5678999983 4366666655577999998877665544321 2235899999 998 77666665543
Q ss_pred ---eEEEEECCC-Ccee-----eeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCC-------CCCC
Q 009022 238 ---TVSCTDLET-GLAL-----SLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDAR-------TNSR 300 (546)
Q Consensus 238 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~ 300 (546)
.|.+++... +... ..+. .......++++|+ +.++++-...+.|+.+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred cCceEEEEecCCCCceeecccceeec----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 2221 1111 0113567888995 4555556677889999987 4443
Q ss_pred C----------cceEEeecCCCcEEEEEECCCCCCE-EEEEeCCCeEEEEECCCCC--C--Cceeeec-CCC--------
Q 009022 301 S----------GEAILIHRKGSKVVGLHCNPIQPEL-LLSCGNDHFARIWDIRRLE--A--GSSLCDL-PHK-------- 356 (546)
Q Consensus 301 ~----------~~~~~~~~~~~~i~~~~~~p~~~~~-l~~~~~dg~i~iwd~~~~~--~--~~~~~~~-~~~-------- 356 (546)
. ...+.........+.|+|+| +++. +++-...+.|+.++..... . ...+.-. +..
T Consensus 289 ~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~ 367 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT 367 (496)
T ss_dssp CCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred ecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence 0 01111122233568999999 8885 4444567789886653211 0 0111110 111
Q ss_pred ----CcEE-EEEEe-------CCCCEEEEEeCCCcEEEEECCCCC
Q 009022 357 ----RVVN-SAYFS-------PSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 357 ----~~v~-~~~~~-------p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
.... .++.. +++.++++-....+|+.++ .+|.
T Consensus 368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 1233 44454 4567777767788899998 3443
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.92 E-value=7.6e-05 Score=76.91 Aligned_cols=205 Identities=13% Similarity=0.030 Sum_probs=119.3
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCC----CceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (546)
..+..|+|.+.+..++++-...+.|+.+++.. ......+ .........|++.+.++.++++-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 35668899987645555555668899999875 2222222 111223567888866355666656678899999876
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
......+.... .....|++.|.+.+|+.+.. .+.|..+++...... . ...........|+|+|..+
T Consensus 485 ~~~~~l~~~~~---------~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~-l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 485 VKRKTLFREQG---------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--S-LVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp CCEEEECCCSS---------CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--E-ESCSSCSSCCCEEECTTTC
T ss_pred CceEEEEeCCC---------CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--E-EEeCCCCCccEEEEeccCC
Confidence 54333322111 12567889987666655543 267888777543221 1 1111223567899998445
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.++++-+..+.|.++++.... ...+... ........|++..+ .++++....+.|..++..+++.
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 666666677899999986422 2222211 11122345566543 4555555678899999876653
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.92 E-value=0.025 Score=57.24 Aligned_cols=205 Identities=12% Similarity=0.067 Sum_probs=121.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
-..+..|+|++.+.+++.+-...+.|..+++........+....-.....|++.+.+++++++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34578999999775666666667889999987653222222223356789999997355666666778999999976543
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
...+.... .....|++.|.+..|+.+.. .+.|...++...... . ...........|++.+..+.++
T Consensus 119 ~~l~~~~l---------~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~--~-l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 119 KVLFWQEL---------DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--I-IINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp EEEECSSC---------SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSSEEEEEEETTTTEEE
T ss_pred EEEEeCCC---------CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE--E-EEeCCCCCCcEEEEEccCCEEE
Confidence 22221111 13678999998776666653 457777776543221 1 1112234678999998344444
Q ss_pred EEEeCCCeEEEEECCCCCCCceee-ecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLC-DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
++-...+.|..+++........+. .+.|. ..|++..+ .++++-...+.|...|..+++.
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVKGSLPHP---FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC---------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEeCCCCeEEEecCCCCccEEEEeCCCCCc---eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 554566789999886432222211 12233 45666544 4445555678899999887753
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.86 E-value=0.00015 Score=74.65 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCC-ceEEEEEecCCCCEEEEEe-CC-----CeEEEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNPTNDGTVYAAS-SD-----GTVSCTD 243 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~-~d-----g~i~iwd 243 (546)
...++++.+++ ++++.|+. +..+.+||..+..-.... ..+.. .-.++++.++ +++++.|+ .+ ..+.+||
T Consensus 244 ~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 244 FCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp SSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEE
T ss_pred ccccccCCCCC-CEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-CeEEEEeCcccCCcccccceEeC
Confidence 34456778888 78888884 458999998876433221 11211 2234556667 88888888 34 5699999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC---------cEEEEeCCCCCCCcceEEeecC----
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---------FLYLVDARTNSRSGEAILIHRK---- 310 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~---- 310 (546)
..+..-...-.....+...... ...+..++..++.|+.+| .+..||..+....... .....
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~-----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~-~~~~~~~~~ 394 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADK-----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGV 394 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCT-----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE-EECEETTEE
T ss_pred CCCCcceeCCCccccccccccc-----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC-Ccccccccc
Confidence 9887644321000000000000 011234555555555443 5678888765432111 11110
Q ss_pred ---CCcEEEEEECCCCCCEEEEEeCCC-----------eEEEEECCCCCCCceee--ecCCCCcEEEEEEeCCCCEEEEE
Q 009022 311 ---GSKVVGLHCNPIQPELLLSCGNDH-----------FARIWDIRRLEAGSSLC--DLPHKRVVNSAYFSPSGSKILTT 374 (546)
Q Consensus 311 ---~~~i~~~~~~p~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~s~ 374 (546)
...-.++.+...++.+++.|+.++ .|.+||..+..- ..+. .+.....-.+++..|++++++.|
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTSCEEEEC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCCCEEEEC
Confidence 112234444333677888887543 677888764322 1111 22222223455677899999999
Q ss_pred eCC-----------CcEEEEECCCCC
Q 009022 375 SQD-----------NRLRIWDSIFGN 389 (546)
Q Consensus 375 s~d-----------g~i~vwd~~~~~ 389 (546)
+.+ ..+.+||..+.+
T Consensus 474 G~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 474 GQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcccCcCcCCCCcccceEEEcCCCCc
Confidence 864 468999987654
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.00031 Score=72.38 Aligned_cols=231 Identities=12% Similarity=0.077 Sum_probs=122.8
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC----ceeeeeecCCCCCCCCCccc
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWR 267 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~ 267 (546)
.+.|++.++.+......+. ....+..|+|.+..+.++++-...+.|+.+++... .....+.. ...
T Consensus 385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------~~~ 453 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------DIQ 453 (699)
T ss_dssp TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------CC-
T ss_pred ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------CCC
Confidence 3578888887655433331 23456789999873444444445678999998751 11111110 001
Q ss_pred ceEEEEecCCCCEE-EEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC-CeEEEEECCCCC
Q 009022 268 MLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLE 345 (546)
Q Consensus 268 ~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~ 345 (546)
....|++.+.+..| ++-...+.|.++++...... . ...........|++.|..+.++++-... +.|.++++....
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~--~-l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--T-LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE--E-ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE--E-EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 24567888654444 44456688999998754321 1 1111223467889998444444443333 678888775322
Q ss_pred CCceeeecCCCCcEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCcee
Q 009022 346 AGSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 424 (546)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 424 (546)
. ..+.. ..-...+.|+|+|++. ++++-+..+.|.++++..... ..+... ......++.+++...
T Consensus 531 ~-~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-----~~~~~~-~~~~~~P~glavd~~------- 595 (699)
T 1n7d_A 531 I-YSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILED-EKRLAHPFSLAVFED------- 595 (699)
T ss_dssp C-CEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-----EEECCC-SSSCSSCCCCEEETT-------
T ss_pred e-eEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-----EEEEec-CCcCCCceEeEEECC-------
Confidence 1 12211 1223456899998654 455555667899999864221 111110 011111222222221
Q ss_pred EEeeeeeecCCCCcCcceEEEECCchhhhHhhc
Q 009022 425 VIGRYISENYNGAALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 425 ~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 457 (546)
.-|+ +....+.|..++..+|+.+..+.
T Consensus 596 --~lyw----td~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 596 --KVFW----TDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp --EEEE----ECSTTTCEEEEETTTEEEEECCC
T ss_pred --EEEE----EeCCCCeEEEEEccCCCceEEee
Confidence 2222 23556789999988888766664
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.04 Score=59.94 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=103.6
Q ss_pred CCCeEEEEEcCCC-----CcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEE
Q 009022 170 SRRVTCLEFHPTN-----NHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCT 242 (546)
Q Consensus 170 ~~~V~~l~~~~~~-----~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iw 242 (546)
...|.|+++.|.. ..+++.|.. |++|+|+++...+.......+......++.+..- +..+|+.|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4589999998642 258999986 9999999998765554432222234455544322 14578889999998666
Q ss_pred ECC--CCceeee--eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEE-
Q 009022 243 DLE--TGLALSL--MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL- 317 (546)
Q Consensus 243 d~~--~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~- 317 (546)
.++ +|..... ...... ++.-..+...+..-+.+..+....+|.-.. . +....-....+..+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~---------pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~----l~~s~l~~~~v~~~~ 698 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQ---------PTVLRTFRSLSTTNVFACSDRPTVIYSSNH-K----LVFSNVNLKEVNYMC 698 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSS---------CCEEEEEESSSCEEEEEESSSCEEEEESSS-S----EEEEEBSSSCCCEEE
T ss_pred EEcCCCCccccceeEEcCCC---------ceEEEEEeeCCceeEEEECCCCEEEEEcCC-c----eEEeccChHHhceEe
Confidence 554 4444322 111111 233333434444444444455555554332 1 11111111123222
Q ss_pred EECCC-CCCEEEEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEe
Q 009022 318 HCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 318 ~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s 375 (546)
.|+.. -..-++..+ ++.++|.-+.... ...+...+-...+..++++|..+.++++.
T Consensus 699 ~F~se~~~~g~v~~~-~~~LrI~~i~~~~-~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 699 PLNSDGYPDSLALAN-NSTLTIGTIDEIQ-KLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp EECCSSSTTEEEEEC-SSCEEEEEECCSS-SEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccCcccCCCcEEEEc-CCceEEEEecccC-CeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 34321 134455444 5569999886442 22333345567789999999777666554
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.78 E-value=0.0017 Score=58.83 Aligned_cols=168 Identities=10% Similarity=0.083 Sum_probs=108.4
Q ss_pred CCCceEEEEEecCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEe---cCCCCEEEEEe---
Q 009022 213 HSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI---NPEKGVVLVAD--- 285 (546)
Q Consensus 213 ~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~--- 285 (546)
...-..+++|++. ...|+.++ ..++|..|+...+..... ........+ .....+..|.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g-~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 11 KNLTPEDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG-DGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TTCCCSCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS-CCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cccCCcCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC-CCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 3344567899987 45555555 789999999976644433 222100001 11124689999 68877777644
Q ss_pred ----------CCCcEEEEeCC---CCCCCcceEEee----c-------CCCcEEEEEECCCCCCEEEEEeCC-CeEEEEE
Q 009022 286 ----------NFGFLYLVDAR---TNSRSGEAILIH----R-------KGSKVVGLHCNPIQPELLLSCGND-HFARIWD 340 (546)
Q Consensus 286 ----------~dg~i~i~d~~---~~~~~~~~~~~~----~-------~~~~i~~~~~~p~~~~~l~~~~~d-g~i~iwd 340 (546)
.+..|..||+. +++..... .+. . ....+..++..+ +++..++++.. +.|..++
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe
Confidence 26789999998 66554322 111 1 112488999999 99999988888 8877777
Q ss_pred CCCCCCCceeeec----CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 341 IRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 341 ~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
.... ....+... ......+.|+++|++..|++....|.|..+|+.
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 6532 11111110 122346799999999999888779999999987
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.0022 Score=58.59 Aligned_cols=147 Identities=9% Similarity=0.143 Sum_probs=92.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC----CC---EEEEEeC---CCcEEEEeCC
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE----KG---VVLVADN---FGFLYLVDAR 296 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~ 296 (546)
..+++.....+-|.+||+ +|+.+..+... .++.+.+-|+ ++ ++++... ++.|.+|++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g-----------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTG-----------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECCS-----------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccCC-----------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 556777777788999999 78888776431 2566655552 22 2333333 5789999774
Q ss_pred CCCCCcceE-----EeecCCCcEEEEEE--CCCCCC-EEEEEeCCCeEEEEECCCCC----CCceeeecCCCCcEEEEEE
Q 009022 297 TNSRSGEAI-----LIHRKGSKVVGLHC--NPIQPE-LLLSCGNDHFARIWDIRRLE----AGSSLCDLPHKRVVNSAYF 364 (546)
Q Consensus 297 ~~~~~~~~~-----~~~~~~~~i~~~~~--~p~~~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~ 364 (546)
........+ ........+..+++ +|..+. ++++...+|.+..|++.... ..+.+..+...+.+..|..
T Consensus 108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcvv 187 (355)
T 3amr_A 108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAA 187 (355)
T ss_dssp TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEE
Confidence 221111111 00011135667777 773444 67778889999999984321 2234455555677889999
Q ss_pred eCCCCEEEEEeCCCcEEEEEC
Q 009022 365 SPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 365 ~p~~~~l~s~s~dg~i~vwd~ 385 (546)
.+....|+.+-.+.-|..++.
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEEC
T ss_pred cCCCCeEEEecccceEEEEeC
Confidence 998888999988866655554
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.76 E-value=0.033 Score=56.40 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=113.6
Q ss_pred CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceE
Q 009022 191 KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 270 (546)
Q Consensus 191 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 270 (546)
....|+..++.+......+....-..+..|+|++..+.++++-..++.|..+++........+.... ....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---------~~P~ 83 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL---------DYPE 83 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC---------CCcc
Confidence 3467999999876543333222334678999999845555566667899999987654333332111 1366
Q ss_pred EEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCCCc
Q 009022 271 GMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGS 348 (546)
Q Consensus 271 ~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 348 (546)
.|++.+.+..|+.+ ...+.|.+.++..... .. ...........|++.|..+.++.+- +..+.|...++..... .
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~-l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~ 159 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QV-LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T 159 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTC--EE-EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EE-EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E
Confidence 78888766655554 4567899999875432 11 1112334678999999444444443 2256788888753322 2
Q ss_pred eeeecCCCCcEEEEEEeCCCCEEEEE-eCCCcEEEEECCCC
Q 009022 349 SLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFG 388 (546)
Q Consensus 349 ~~~~~~~~~~v~~~~~~p~~~~l~s~-s~dg~i~vwd~~~~ 388 (546)
.+ ...-...+.|++++.+..|+.+ ...+.|..+++...
T Consensus 160 ~l--~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 160 TL--VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EE--ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 22 1234567899999966655555 45678999998653
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.73 E-value=0.04 Score=55.82 Aligned_cols=200 Identities=9% Similarity=0.034 Sum_probs=128.7
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+..|+|++.+.+++.+-..++.|..+++........+. ........|++.+.+++++++-...+.|.+.++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 4678999999775777777778899999987654444442 222456789998774556666666789999998755432
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE-
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL- 327 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l- 327 (546)
..+.... .....|++.|....|+.+.. .+.|...++...... .+ .........|++.+ .+..|
T Consensus 116 ~l~~~~l---------~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~--~l--~~~~~~P~GlalD~-~~~~LY 181 (628)
T 4a0p_A 116 VLVWKDL---------DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT--TL--VPNVGRANGLTIDY-AKRRLY 181 (628)
T ss_dssp EEECSSC---------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EE--ECSCSSEEEEEEET-TTTEEE
T ss_pred EEEeCCC---------CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE--EE--ECCCCCcceEEEcc-ccCEEE
Confidence 2221111 13789999997666666652 567888887654321 11 12334788999998 54544
Q ss_pred EEEeCCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 328 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
++-...+.|..+++..... ..+. ........|++.. +.++++-...+.|...|..+++
T Consensus 182 ~aD~~~~~I~~~d~dG~~~-~v~~--~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNR-EVIA--DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEETTTTEEEEEETTSCSC-EEEE--ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEcCCCCce-EEee--ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 4445678899999865332 2222 2223355777764 4555555557889999877665
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.024 Score=50.86 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=103.2
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEE
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 271 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (546)
..+|.|.|+..+.......-.- -+.-.+|. ...||.-. ...+.++|+++...+........ |.-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP~-~~ViALra-g~~LQiFnletK~klks~~~~e~----------Vvf 111 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 111 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC----SEEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEECSSC----------EEE
T ss_pred CCEEEEEECCCCCCcccccccc----ceeeeCCC-ccEEEEec-CCeEEEechHHhhhhcceecCCc----------cEE
Confidence 3479999998876654432111 23445887 77777665 67899999999998888777542 555
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec--CCCcEEEEEECCCCCCEEEEEe-------CCCeEEEEECC
Q 009022 272 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCG-------NDHFARIWDIR 342 (546)
Q Consensus 272 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~-------~dg~i~iwd~~ 342 (546)
-.|-....+-++. +..|+.|++.....+.+....+. .+..|.....++ +.++++..+ -.|.+.+|...
T Consensus 112 WkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 112 WKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp EEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeec
Confidence 5665544433333 36899999987544444333222 234688888888 777766554 24778999985
Q ss_pred CCCCCceeeecCCCCcEEEEEEeC---CCCEEEEEeC---CCcEEEEECCC
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFSP---SGSKILTTSQ---DNRLRIWDSIF 387 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~s~s~---dg~i~vwd~~~ 387 (546)
.... +.+ -+|......+.+.- ...+|+.+.. .+.++|-++..
T Consensus 189 r~~s-Q~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~ 236 (365)
T 2xzh_A 189 RKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 236 (365)
T ss_dssp TTEE-EEE--CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSS
T ss_pred cccc-cee--eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 3221 111 24543332222211 1123333322 25899998843
No 299
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.0088 Score=57.67 Aligned_cols=203 Identities=9% Similarity=0.065 Sum_probs=112.4
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCC----cEEEEeCCCCce-eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEE
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 243 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (546)
.......|+|+++|..++++....+ .+.+.+...... ...+. .......++++|+++.++++-...+.|..++
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~ 254 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYD 254 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEE
Confidence 4456788999999943555544322 233344322211 11221 1234577889995377777766788999999
Q ss_pred CCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE-eCCCcEEEEeCCCC--CCC-cceEEee-cC--------
Q 009022 244 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTN--SRS-GEAILIH-RK-------- 310 (546)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~--~~~-~~~~~~~-~~-------- 310 (546)
..++........... .....|+|+|++++|+++ ...+.|+.++.... ... ...+... ..
T Consensus 255 ~~~~~~~~~~~~~~~--------~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~ 326 (430)
T 3tc9_A 255 FTTQETTPLFTIQDS--------GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVG 326 (430)
T ss_dssp TTTTEEEEEEECSSS--------SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEG
T ss_pred CCCCcEEEEEEcCCC--------CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCC
Confidence 987655333322211 136789999999955554 56788999876532 110 0001110 00
Q ss_pred ----CCcEE-EEEECC-------CCCCEEEEEeCCCeEEEEECCCCCCCceeeecCC------------------CCcEE
Q 009022 311 ----GSKVV-GLHCNP-------IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH------------------KRVVN 360 (546)
Q Consensus 311 ----~~~i~-~~~~~p-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~~v~ 360 (546)
-.... .++..+ .++.++++-...+.|+.++.. + ......+. -....
T Consensus 327 ~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G---~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~ 402 (430)
T 3tc9_A 327 KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G---RVTTFAGRGSNGTSGYNDGDLRQEARFNHPE 402 (430)
T ss_dssp GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S---EEEEEEECCTTSSSSCBCEETTTTCBCSSEE
T ss_pred cceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C---cEEEEEeCCCCCCCcccCCCchhhcEeCCCc
Confidence 01123 455432 035555555566788888742 1 11111111 12478
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEEC
Q 009022 361 SAYFSP-SGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 361 ~~~~~p-~~~~l~s~s~dg~i~vwd~ 385 (546)
.|+++| ++.++++-...+.|+.+++
T Consensus 403 giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 403 GIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEcc
Confidence 899999 4666666666778888775
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.64 E-value=0.018 Score=53.22 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=104.6
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcE-EEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQV-GVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
+.+..|.+.+++ ++++++. ++.| +-+| .+..-......+...+..+.+.|+ +.+++.+...+.++-+|- .+..
T Consensus 122 ~~~~~i~~~~~~-~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~-gG~t 195 (327)
T 2xbg_A 122 GSPRLIKALGNG-SAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEP-GQTA 195 (327)
T ss_dssp SCEEEEEEEETT-EEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTT-SCEEEEETTSSEEEEECT-TCSS
T ss_pred CCeEEEEEECCC-CEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC-CcEEEEECCCcEEEEeCC-CCCc
Confidence 456778887776 6666664 4544 3333 232222222345667899999997 777766654333333332 1222
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-ecCCCcEEEEEECCCCCCEEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~ 328 (546)
-..+..... ..+..+.+.+++..+++ +.+|.+++.+...+......... ......+.++.+.+ ++.+++
T Consensus 196 W~~~~~~~~--------~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~ 265 (327)
T 2xbg_A 196 WEPHNRTTS--------RRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWL 265 (327)
T ss_dssp CEEEECCSS--------SCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEE
T ss_pred eeECCCCCC--------CccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEE
Confidence 222211111 14788889888876644 45677777642211111111000 01122588899988 667666
Q ss_pred EEeCCCeEEEEECCCCCCCceeeec-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
++. +|.| ++....+..-..+... .....+.++.|.+++. +++++.+|.|.-++-
T Consensus 266 ~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 266 AGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 654 6766 3444333333322211 2345678898876554 556667887776653
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.50 E-value=0.059 Score=49.66 Aligned_cols=279 Identities=10% Similarity=0.054 Sum_probs=137.0
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEec---ccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG---NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
..+.+|.|.+.+ ..+++| ..|.| +.....++.-.... ......+.+|.|.+ +..++ ++..+.|.. ..+.|
T Consensus 36 ~~~~~v~~~~~~-~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 36 ATILDMSFIDRH-HGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGG 108 (327)
T ss_dssp SCEEEEEESSSS-CEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ESSTT
T ss_pred CcEEEEEECCCC-cEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-ECCCC
Confidence 468999998776 566654 46655 33333332211211 11245788999976 33444 455565543 33444
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
+.-..+..... . ...+..+.+.+++..++++ ..|.|+.- ...+...... . ......+..+.+.| ++.++
T Consensus 109 ~tW~~~~~~~~-~-----~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~-~-~~~~~~~~~~~~~~-~~~~~ 177 (327)
T 2xbg_A 109 QSWSQIPLDPK-L-----PGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQAL-V-QEAIGVMRNLNRSP-SGEYV 177 (327)
T ss_dssp SSCEECCCCTT-C-----SSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEE-E-CSCCCCEEEEEECT-TSCEE
T ss_pred CCceECccccC-C-----CCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEe-e-cCCCcceEEEEEcC-CCcEE
Confidence 43332221100 0 0125677777666666555 45554331 1222222111 1 12233688999998 77777
Q ss_pred EEEeCCCeEEE-EECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCccc
Q 009022 328 LSCGNDHFARI-WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 406 (546)
Q Consensus 328 ~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 406 (546)
+++. .|.++. +|- .+..-..+. ......+..+.+.+++.++++ +.+|.+++.+...++.-.... ...+...
T Consensus 178 ~~g~-~G~~~~S~d~-gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~----~~~~~~~ 249 (327)
T 2xbg_A 178 AVSS-RGSFYSTWEP-GQTAWEPHN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELL----SPLRRNS 249 (327)
T ss_dssp EEET-TSSEEEEECT-TCSSCEEEE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCB----CTTSSCC
T ss_pred EEEC-CCcEEEEeCC-CCCceeECC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEecc----CCcccCC
Confidence 7664 454443 332 012222222 245567889999998876654 457777776422122100000 0000011
Q ss_pred CCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcC--CCCCcccceeeecCCCcEEEEecCCc
Q 009022 407 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD--PNITTISPVNKLHPRDDVLASGSSRS 484 (546)
Q Consensus 407 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~v~~~s~~~~~l~sgsdg~ 484 (546)
...+.+.+.|. +.+++ . +.++.| ++....|+.-..+.. .....+..+ .|.+++.+++.|.+|.
T Consensus 250 ~~~~~v~~~~~---------~~~~~---~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v-~~~~~~~~~~~G~~G~ 314 (327)
T 2xbg_A 250 VGFLDLAYRTP---------NEVWL---A-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI-LFFSPDQGFILGQKGI 314 (327)
T ss_dssp SCEEEEEESSS---------SCEEE---E-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEE-EEEETTEEEEECSTTE
T ss_pred cceEEEEecCC---------CEEEE---E-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEE-EEECCCceEEEcCCce
Confidence 11235566654 33333 1 223445 344433432222221 112456666 6777777777777998
Q ss_pred EEEEcC
Q 009022 485 IFIWRP 490 (546)
Q Consensus 485 i~vwd~ 490 (546)
|.-++-
T Consensus 315 i~~~~~ 320 (327)
T 2xbg_A 315 LLRYVT 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 877764
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.36 E-value=0.09 Score=48.65 Aligned_cols=199 Identities=12% Similarity=0.114 Sum_probs=109.9
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEc------------CCCcEEEEeCCCC--cee-EEeccc----CCCceEEEEEecC
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGD------------KKGQVGVWDFYKV--SEK-IVYGNI----HSCIVNNIRFNPT 225 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~------------~d~~i~iwd~~~~--~~~-~~~~~~----~~~~v~~~~~~~~ 225 (546)
.+.+-....-.|...|+| ..+++++ .+|.|.++|..+. +.. ..+... ..-....+.+.++
T Consensus 44 ~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 44 LVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp ECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 344422344566678888 5544442 6899999998743 211 112111 2235677777663
Q ss_pred -CCC-EEEEEeC---CCeEEEEECCCCc--eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe-------------
Q 009022 226 -NDG-TVYAASS---DGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD------------- 285 (546)
Q Consensus 226 -~~~-~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------- 285 (546)
++. +|+.+.. +.+|.+|++.... ....-..... .....+.+.+.++|.+.++..
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccC------CCCCCceEEEeCCCCEEecCCcEeCCcccccchh
Confidence 132 4555432 4577787776532 2211111111 122588999999998777754
Q ss_pred ----CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCCCceeeecCCCCcEE
Q 009022 286 ----NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGSSLCDLPHKRVVN 360 (546)
Q Consensus 286 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 360 (546)
..|.|+.++.. + .. ... ..-...+.++|+| +++.|+.+ +..+.|..|++...........+......-
T Consensus 197 ~~~~~~g~vyr~d~~--~-~~-~~~--~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PD 269 (355)
T 3sre_A 197 HLGLAWSFVTYYSPN--D-VR-VVA--EGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVD 269 (355)
T ss_dssp HTTCCCEEEEEECTT--C-CE-EEE--EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred hccCCccEEEEEECC--e-EE-Eee--cCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCc
Confidence 13556666652 1 11 111 1112578999999 88766655 457899999986322111111122345567
Q ss_pred EEEEeC-CCCEEEEEeCC
Q 009022 361 SAYFSP-SGSKILTTSQD 377 (546)
Q Consensus 361 ~~~~~p-~~~~l~s~s~d 377 (546)
.+++.+ +|++.+++..+
T Consensus 270 Gi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEECTTTCCEEEEEESC
T ss_pred eEEEeCCCCcEEEEecCC
Confidence 788888 58877666533
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.35 E-value=0.1 Score=48.93 Aligned_cols=268 Identities=12% Similarity=0.095 Sum_probs=141.5
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEE
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 271 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (546)
..+|.|.|+..+..+....- .--+.-.+|. .+.|+.-. ..++.|+|+++...+........ |.-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~~e~----------Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 110 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEECSSC----------CCE
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceecCCC----------ceE
Confidence 34899999988766544321 1234556887 67776665 67999999999998888776543 333
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec--CCCcEEEEEECCCCCCEEEEEe-------CCCeEEEEECC
Q 009022 272 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCG-------NDHFARIWDIR 342 (546)
Q Consensus 272 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~-------~dg~i~iwd~~ 342 (546)
-.|-... .|+..+ +..|+.|++.....+.+....+. .+..|.....++ +.++++..+ -.|.+.+|...
T Consensus 111 WkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 111 WKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred EEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc
Confidence 4454333 343333 36899999976444443333222 235688888888 777776544 24788999986
Q ss_pred CCCCCceeeecCCCCcEEEEEEeCC---CCEEEEEeC---CCcEEEEECCCC-CCCCCCcceeeccCCcc---cCCceeE
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFSPS---GSKILTTSQ---DNRLRIWDSIFG-NLDSPSREIVHSHDFNR---HLTPFRA 412 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~s~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~ 412 (546)
.... +.+ -+|......+.+..+ ..+|+.+.. .+.++|-++... .-..+.........+.. .-.|+.+
T Consensus 188 r~~s-Q~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 188 RKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp TCCE-EEE--CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred cccc-chh--eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 4221 111 256544433333211 123443333 378999998543 11111111111111111 1112333
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhcCCCCCcccceeeec-CCCcEEEEecCCcEEEEcCC
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH-PRDDVLASGSSRSIFIWRPK 491 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~s-~~~~~l~sgsdg~i~vwd~~ 491 (546)
..++..+.. | .-..-|.|++||+.||.++..-+-.. ..+... +.+ ..+-++...-.|.|.--.+.
T Consensus 265 qvs~kygvi-------y-----viTK~G~i~lyDleTgt~i~~nrIs~-~~iF~t-~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 265 QISEKHDVV-------F-----LITKYGYIHLYDLETGTCIYMNRISG-ETIFVT-APHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEETTTTEE-------E-----EEETTSEEEEEETTTCCEEEEEECCS-SCEEEE-EEETTTTEEEEEETTCEEEEEEEC
T ss_pred EecccCCEE-------E-----EEecCceEEEEecccceeeeeecccC-CceEEe-cccCCCCcEEEEccCceEEEEEEc
Confidence 333332111 1 12345789999999998876544333 222211 222 22333333335655555555
Q ss_pred CCCc
Q 009022 492 EKSE 495 (546)
Q Consensus 492 ~~~~ 495 (546)
....
T Consensus 331 e~~i 334 (494)
T 1bpo_A 331 EENI 334 (494)
T ss_dssp TTTH
T ss_pred cccc
Confidence 4443
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.35 E-value=0.09 Score=48.99 Aligned_cols=205 Identities=10% Similarity=0.012 Sum_probs=107.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--e--cccCCCceEEEEEecC---CCCEEEEEeCC-----C
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--Y--GNIHSCIVNNIRFNPT---NDGTVYAASSD-----G 237 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~--~~~~~~~v~~~~~~~~---~~~~l~s~~~d-----g 237 (546)
-.....|+|.|+| +++++ ...|.|++++ .+..... + ..........|+|+|+ ++.++++-... +
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3457799999999 55555 4569999998 3322111 1 0112356789999996 45555554432 6
Q ss_pred eEEEEECCCCce---eeeee-cCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------------CCcEEEEeCCCCC-
Q 009022 238 TVSCTDLETGLA---LSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------FGFLYLVDARTNS- 299 (546)
Q Consensus 238 ~i~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~- 299 (546)
.|..|+...+.. ...+. ..... ... .....|+|.|+|.+.++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~--~~~--h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARP--HGL--HSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCT--TCC--CCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCC--CCC--cCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 788888764421 11111 11000 000 12457899999976665432 2566666654310
Q ss_pred ----------CCcceEEeecCCCcEEEEEECCCCCCEEEEEeCCCe--------EEEEECCCCC---------------C
Q 009022 300 ----------RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF--------ARIWDIRRLE---------------A 346 (546)
Q Consensus 300 ----------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~--------i~iwd~~~~~---------------~ 346 (546)
....... ..+ .....++|+|.++.++++-..... |.+.. .+. .
T Consensus 182 ~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp TTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTS
T ss_pred CCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCC
Confidence 0111111 111 246788999845555554433332 33332 211 0
Q ss_pred CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 347 GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 347 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
...+..+.+......++| .+|.++++.-..+.|...++..
T Consensus 258 ~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 258 RDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp CCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred cCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 112222233345667887 4676666665667777777653
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.07 E-value=0.32 Score=49.17 Aligned_cols=199 Identities=10% Similarity=0.076 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 250 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (546)
..+.+|+|.+.+.+++++-...+.|+.+++........+ ...-.....+++.+.+++++++-+..+.|.+.++.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~- 426 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR- 426 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-
Confidence 357789999865466666666788999998765443333 223346678999876355666666678999999875533
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEE
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
..+.... .....+|++.|....|+.+.. .+.|...++...... . .....-...+.|++.+ ....|+
T Consensus 427 ~~l~~~~--------l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~-l~~~~l~~P~GlalD~-~~~~LY 494 (619)
T 3s94_A 427 KILISED--------LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--V-LVNTSLGWPNGLALDY-DEGKIY 494 (619)
T ss_dssp EEEECTT--------CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--E-EECSSCSCEEEEEEET-TTTEEE
T ss_pred EEEEECC--------CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--E-EEeCCCCCCeeeEEcc-cCCEEE
Confidence 2222111 124789999997666665543 356777776543221 1 1222234688999998 555554
Q ss_pred EE-eCCCeEEEEECCCCCCCceeee--cCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 329 SC-GNDHFARIWDIRRLEAGSSLCD--LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 329 ~~-~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.+ +..+.|..+++..... ..+.. +.|. ..|+...+ .++++-...+.|...+..++
T Consensus 495 ~aD~~~~~I~~~~~dG~~~-~~~~~~~l~~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 495 WGDAKTDKIEVMNTDGTGR-RVLVEDKIPHI---FGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEETTTTEEEEEESSSCCC-EEEEECCCCSS---CCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEECCCCEEEEEecCCCce-EEEeccCCCCc---EEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 44 4567899999853322 22211 2333 34555433 44444444567777777665
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.03 E-value=0.15 Score=47.49 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=82.4
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeC-C----
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN-F---- 287 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d---- 287 (546)
....++|.|+ +++++ +...|.|++++ .+......... .. .........|+|+|+ +..|+++.. .
T Consensus 32 ~P~~ia~~pd-G~l~V-~e~~g~I~~i~--~g~~~~~~~~~-v~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLPD-GGMLI-AERPGRIRLFR--EGRLSTYAELS-VY---HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECTT-SCEEE-EETTTEEEEEE--TTEEEEEEECC-CC---CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEEcCC-CeEEE-EeCCCeEEEEE--CCCccEeecce-Ee---ecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 4578999999 77554 45669999998 44432222111 00 001124789999998 555555543 2
Q ss_pred -CcEEEEeCCCCCCC--cceEE-ee---cCCCcEEEEEECCCCCCEEEEEeC-------------CCeEEEEECCCCC--
Q 009022 288 -GFLYLVDARTNSRS--GEAIL-IH---RKGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRLE-- 345 (546)
Q Consensus 288 -g~i~i~d~~~~~~~--~~~~~-~~---~~~~~i~~~~~~p~~~~~l~~~~~-------------dg~i~iwd~~~~~-- 345 (546)
+.|..|+....... ..++. .. ........++|.| ++.++++.+. .|.|.-++....-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 57888877643211 11111 11 1111346899999 8876666432 2566666654200
Q ss_pred ---------CCceeeecCCCCcEEEEEEeC-CCCEEEEEeCCC
Q 009022 346 ---------AGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDN 378 (546)
Q Consensus 346 ---------~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s~dg 378 (546)
....+...++. ....++|+| ++.++++-...+
T Consensus 183 ~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~ 224 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPS 224 (352)
T ss_dssp TCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC-
T ss_pred CCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCC
Confidence 01112222443 356789999 676665544333
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.92 E-value=0.21 Score=46.56 Aligned_cols=151 Identities=13% Similarity=0.044 Sum_probs=81.3
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeC----C
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN----F 287 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d 287 (546)
.....|+|.|+ ++ |+.+..+|.|++++ ..+. ....... . . .........|+++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d-~~G~-~~~~~~~-v--~-~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 29 EVPWSIAPLGG-GR-YLVTERPGRLVLIS-PSGK-KLVASFD-V--A-NVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp SCEEEEEEEET-TE-EEEEETTTEEEEEC-SSCE-EEEEECC-C--C-CSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCeEEEEcCC-Ce-EEEEeCCCEEEEEe-CCCc-eEeeccc-e--e-ecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 34678999998 76 55556669999997 3454 2111111 0 0 001124789999997 555555443 2
Q ss_pred ----CcEEEEeCCCCC--CC--cceEE-eec-CCCcEEEEEECCCCCCEEEEEeC-------------CCeEEEEECCCC
Q 009022 288 ----GFLYLVDARTNS--RS--GEAIL-IHR-KGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRL 344 (546)
Q Consensus 288 ----g~i~i~d~~~~~--~~--~~~~~-~~~-~~~~i~~~~~~p~~~~~l~~~~~-------------dg~i~iwd~~~~ 344 (546)
..|..|+..... .. ..++. ... .......|+|.| ++.++++.+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 567777765431 10 01111 111 111346799999 8887666432 245666665321
Q ss_pred CC------CceeeecCCCCcEEEEEEeC-CCCEEEEEe
Q 009022 345 EA------GSSLCDLPHKRVVNSAYFSP-SGSKILTTS 375 (546)
Q Consensus 345 ~~------~~~~~~~~~~~~v~~~~~~p-~~~~l~s~s 375 (546)
-. ...+...++.. ...++|+| ++.++++-.
T Consensus 180 ~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEec
Confidence 00 11233334543 46799999 676655543
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.84 E-value=0.094 Score=57.03 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=113.5
Q ss_pred EcCCCCcEEEEEc----------CCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 009022 178 FHPTNNHILLSGD----------KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 247 (546)
Q Consensus 178 ~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (546)
|..+...+|+.|. ..|.|+++++...+..........++|++++-.. + +|++|- ...|++|++...
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~--g-~Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN--G-KLLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET--T-EEEEEE-TTEEEEEEECTT
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC--C-EEEEEc-CCEEEEEECCCC
Confidence 3333335788875 3578999998755444444345678888887542 4 555544 378999999866
Q ss_pred ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEE
Q 009022 248 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 327 (546)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 327 (546)
+.+. ..... .. .+..+.....++++++|+.-..|.++..+........+.-......++++.+-. ...+
T Consensus 915 ~~L~-~~~~~---~~-----~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~ 983 (1158)
T 3ei3_A 915 KELR-TECNH---YN-----NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNF 983 (1158)
T ss_dssp SCEE-EEEEE---CC-----CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEE
T ss_pred ceEE-EEeec---cc-----cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcE
Confidence 5443 11100 00 122333434688999999888888876544332222223333455788888874 3578
Q ss_pred EEEeCCCeEEEEECCCCCC----Cceeee---cCCCCcEEEEEE---eCC---------CCEEEEEeCCCcEEEEE
Q 009022 328 LSCGNDHFARIWDIRRLEA----GSSLCD---LPHKRVVNSAYF---SPS---------GSKILTTSQDNRLRIWD 384 (546)
Q Consensus 328 ~~~~~dg~i~iwd~~~~~~----~~~~~~---~~~~~~v~~~~~---~p~---------~~~l~s~s~dg~i~vwd 384 (546)
+.+..+|.|.++....... .+.+.. +.....|+++.- .+. ...++.++.+|.|-+.-
T Consensus 984 l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 984 LGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred EEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 8899999999987653211 112211 123456777652 222 23466677788877663
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.76 E-value=0.37 Score=45.16 Aligned_cols=150 Identities=9% Similarity=0.118 Sum_probs=90.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc----
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG---- 302 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---- 302 (546)
+..++.+- ++.||.-++.....-+.+..+.. -....+..+..+|+|.+||..+. ..|.+..+..+....
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~-----i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRH-----LVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTT-----CCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcc-----cccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 44444444 35677767664333333333210 00113677999999999999865 588888887332111
Q ss_pred -----ce--EEeec----CCCcEEEEEECCCC--CCEEEEEeCCCeEEEEECCCCCCCce-ee----ec---CCCCcEEE
Q 009022 303 -----EA--ILIHR----KGSKVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEAGSS-LC----DL---PHKRVVNS 361 (546)
Q Consensus 303 -----~~--~~~~~----~~~~i~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~~-~~----~~---~~~~~v~~ 361 (546)
+. ..... ...+|..+.|+|.. +..|++-..|+.|++||+........ +. .+ .....|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 11 11111 24579999999942 45889999999999999986222111 11 01 23367889
Q ss_pred EEEeCCCCEEEEEe--CCCcEEEE
Q 009022 362 AYFSPSGSKILTTS--QDNRLRIW 383 (546)
Q Consensus 362 ~~~~p~~~~l~s~s--~dg~i~vw 383 (546)
++|.+++-.|...+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999877676655 66776643
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.67 E-value=0.41 Score=44.52 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=80.9
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee-EEe--cccCCCceEEEEEecC---CCCEEEEEeC---C---
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-IVY--GNIHSCIVNNIRFNPT---NDGTVYAASS---D--- 236 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~--~~~~~~~v~~~~~~~~---~~~~l~s~~~---d--- 236 (546)
--.....|+|.|+| +++++ ..+|.|++++. .+... ..+ ..........|+|+|+ ++.++++-+. +
T Consensus 27 ~l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 27 DLEVPWSIAPLGGG-RYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCSCEEEEEEEETT-EEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCCeEEEEcCCC-eEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 34567899999999 65555 55699999974 33311 111 0112346789999996 4555555442 3
Q ss_pred -CeEEEEECCCC--c---eeeeee-cCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------------CCcEEEEeCC
Q 009022 237 -GTVSCTDLETG--L---ALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------FGFLYLVDAR 296 (546)
Q Consensus 237 -g~i~iwd~~~~--~---~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~ 296 (546)
+.|..|+.... . ....+. ..... .| ....|.|.|+|.++++.+. .|.|.-++..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~--~h----~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAY--IH----NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCS--SC----CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCC--Cc----CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 56777877644 1 111111 11110 01 2457899999986666432 2456666654
Q ss_pred CCCC------CcceEEeecCCCcEEEEEECCCCCCEEEEE
Q 009022 297 TNSR------SGEAILIHRKGSKVVGLHCNPIQPELLLSC 330 (546)
Q Consensus 297 ~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 330 (546)
..-. ...+ ....+ .....++|+|.++.++++-
T Consensus 178 G~~p~~npf~~~~i-~a~G~-rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 178 GRPPADNPFPNSPI-WSYGH-RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp SCCCTTSSSTTCCE-EEECC-SCCCEEEECTTTCCEEEEE
T ss_pred CCCCCCCCCCCCcE-EEEcc-CCcceEEEeCCCCCEEEEe
Confidence 3200 0111 11122 1456899998445555543
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.66 E-value=0.068 Score=48.52 Aligned_cols=189 Identities=11% Similarity=0.020 Sum_probs=94.7
Q ss_pred cEEEEEc-CC-----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCc---e
Q 009022 184 HILLSGD-KK-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGL---A 249 (546)
Q Consensus 184 ~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~---~ 249 (546)
.+++.|+ .+ ..+.+||+.+..-..... .............+ +.+++.|+.+ ..+.+||+.+.. -
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS-ITRKRRYVASVSLH-DRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCC-CChhhccccEEEEC-CEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 5677776 32 368889987764322211 11111111122233 6677777754 468999998876 3
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
......+. ... ....+.+ ++.+++.|+.+ ..+.+||+.+..... .............+.+ ++
T Consensus 94 ~~~~~~p~-----~r~--~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~---~~ 160 (301)
T 2vpj_A 94 YSVAPMNV-----RRG--LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGDMQTAREGAGLVVA---SG 160 (301)
T ss_dssp EEECCCSS-----CCB--SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEECSSCCBSCEEEEE---TT
T ss_pred EECCCCCC-----Ccc--ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCCCCCCcccceEEEE---CC
Confidence 33211111 111 1112222 56677777643 368899987754321 1111111111222222 56
Q ss_pred CEEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 325 ELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 325 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
.+++.|+.+ ..+.+||+.+..- ..+..+.....-.+++. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 677777754 4588999865321 12222222111112222 267777777764 468899987654
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.65 E-value=0.027 Score=47.47 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCcee------EEecc-cCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK------IVYGN-IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
.+..|+|+|+| .+.+. .+|.++-.+..+.... ..+-. +-. ...++.|.|+ +.+.++ .||.|.-++.
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~-G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPN-GYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTT-SCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCC-CCEEEe--CCCEEEEeCC
Confidence 56699999988 55555 6777766665442211 11111 111 1478889998 777766 5699988876
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC----cceEEeecCCCcEEEEEEC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----GEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~ 320 (546)
.+.....-+.. ...-+...+..+..|.+.|+|.+.++. ++.++-....+.... .........-....-+.|.
T Consensus 115 P~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceecc--ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 43221111000 000112334568999999999988888 677554333221110 0111111222244556788
Q ss_pred CCCCCEEEEEeCCCeE
Q 009022 321 PIQPELLLSCGNDHFA 336 (546)
Q Consensus 321 p~~~~~l~~~~~dg~i 336 (546)
| ++.++++. ++.+
T Consensus 191 ~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 S-VGTLFGVQ--GGKF 203 (236)
T ss_dssp T-TSCEEEEE--TTEE
T ss_pred C-CCcEEEEe--CCeE
Confidence 8 77766665 6643
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.62 E-value=0.21 Score=42.07 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=100.3
Q ss_pred cEEEEEcCCCcEEEEeCCCCc------eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (546)
.+|++...| ++++=...... ....+-..-=..+..++|+|+ +.+.++ .+|.|+-.+..+.....-+..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-- 78 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGR-- 78 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHH--
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC-ccEEEE--eCCeEEEECCCCCCccccccc--
Confidence 466666767 66665554433 122222211246789999997 776666 678777766654322111111
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc---ceEEeec-CCCcEEEEEECCCCCCEEEEEeCC
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG---EAILIHR-KGSKVVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~d 333 (546)
...-+...+....++.|.++|.+.++ .||.|+-++..+..... ....... .-..+..|.+.| ++.+.++. +
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--C
Confidence 00001112223478889999998888 55999888764322110 1011111 113689999999 88877776 7
Q ss_pred CeEEEEECCCCCCCce---eeec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 009022 334 HFARIWDIRRLEAGSS---LCDL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 385 (546)
Q Consensus 334 g~i~iwd~~~~~~~~~---~~~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~ 385 (546)
+.++-....+.....- ...+ ..-.....+.|.|++.+.++. ++ ++|..
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 7754433221111000 0011 122234456788898877776 66 44443
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.51 E-value=0.14 Score=46.44 Aligned_cols=189 Identities=11% Similarity=0.037 Sum_probs=95.6
Q ss_pred cEEEEEcCC--CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC----CeEEEEECCCCceeeeeecCC
Q 009022 184 HILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----GTVSCTDLETGLALSLMNVNP 257 (546)
Q Consensus 184 ~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~ 257 (546)
.+++.|+.+ ..+.+||..+..-...........-.+++. -+ +.+++.|+.+ ..+.+||+.+.+-......+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WD-NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ET-TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-EC-CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 567777653 578889988765322211011111112222 23 6677777754 678899998876544332221
Q ss_pred CCCCCCCcccceEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 258 NGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
. .. ....+. -++.+++.|+.+ ..+.+||+.+...... ............+.+ ++.+++.|+
T Consensus 91 ~-----r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG 157 (306)
T 3ii7_A 91 P-----RD--SLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEA---NGLIYVCGG 157 (306)
T ss_dssp C-----CB--SCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred c-----cc--ceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEE---CCEEEEECC
Confidence 1 11 111122 266777777654 4689999887542211 011111111122222 556677766
Q ss_pred C---------CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 332 N---------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 332 ~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
. -..+.+||+.+.. ...+..+.....-.+++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATET-WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCcccccceEEEeCCCCCe-EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 3 3458899986542 1222222221111222222 66777777654 458899987654
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.46 E-value=0.16 Score=46.09 Aligned_cols=188 Identities=13% Similarity=0.016 Sum_probs=95.7
Q ss_pred cEEEEEcCC-----CcEEEEeCCCCc---eeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCcee
Q 009022 184 HILLSGDKK-----GQVGVWDFYKVS---EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLAL 250 (546)
Q Consensus 184 ~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 250 (546)
++++.|+.+ ..+.+||+.+.. -...........-.+++. .+ +.+++.|+.+ ..+.+||+.+.+-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LG-DMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ET-TEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-EC-CEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 677888754 468999988765 322211111111112222 24 6677777653 36889999887654
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
..-..+.. .. ...++. -++.+++.|+.+ ..+.+||+.+...... ............+.+ ++.
T Consensus 142 ~~~~~p~~-----r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~ 208 (301)
T 2vpj_A 142 MLGDMQTA-----RE--GAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL---NDH 208 (301)
T ss_dssp EEEECSSC-----CB--SCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE---TTE
T ss_pred ECCCCCCC-----cc--cceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE---CCE
Confidence 43322211 00 111122 266777777654 4688999877542211 011111111222333 557
Q ss_pred EEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q 009022 326 LLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 388 (546)
Q Consensus 326 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~ 388 (546)
+++.|+.+ ..+.+||+.+..- ..+..+.....-.+++.. ++.+++.|+.+ ..|.+||+.+.
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 77777764 4689999875321 122222211111122222 67777777765 35777887654
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.42 E-value=0.6 Score=43.39 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=83.1
Q ss_pred eeeeccccCCCeEEEEEcCCCCc-EEEEEcCCCcEEEEeCCCCce--eEE---ecccCCCceEEEEEecC---CCCEEEE
Q 009022 162 NCAVIRYHSRRVTCLEFHPTNNH-ILLSGDKKGQVGVWDFYKVSE--KIV---YGNIHSCIVNNIRFNPT---NDGTVYA 232 (546)
Q Consensus 162 ~~~~~~~h~~~V~~l~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~--~~~---~~~~~~~~v~~~~~~~~---~~~~l~s 232 (546)
.+..+...-...+.|+|.|+| + ++++ ...|.|++++...... ... +..........|+|+|+ ++.++++
T Consensus 9 ~~~~va~~l~~P~~i~~~pdG-~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 9 NVEVLQDKLDHPWALAFLPDN-HGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp EEEEEEEEESSEEEEEECSTT-CCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCCC-CEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 334444344567899999999 5 5554 4578999998543211 110 11112345789999994 3555555
Q ss_pred EeC-------CCeEEEEECCCC--ce--ee-eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------------C
Q 009022 233 ASS-------DGTVSCTDLETG--LA--LS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------F 287 (546)
Q Consensus 233 ~~~-------dg~i~iwd~~~~--~~--~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d 287 (546)
-+. ...|..|++... .. .. .+...+.. .... .....|.|.|+|.++++.+. .
T Consensus 87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~~~--h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL-STGN--HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCC-BSSS--CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCC-CCCc--ccCccEEECCCCcEEEEECCCCCCCccCCCCCCC
Confidence 433 235666666533 11 11 11111100 0001 12457999999965555433 2
Q ss_pred CcEEEEeCCCCCC-----------CcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 288 GFLYLVDARTNSR-----------SGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 288 g~i~i~d~~~~~~-----------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
|.|.-++....-. ...+.. ..+ .....++|.|..+.++++
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEE
Confidence 4677777653210 111111 222 257889999844444443
No 317
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.37 E-value=0.81 Score=44.42 Aligned_cols=239 Identities=14% Similarity=0.175 Sum_probs=129.5
Q ss_pred EEEEEcCCCcEEEEeCCCCceeEEeccc------------------------CCCceE--EEEEecC--CCCEEEEEeC-
Q 009022 185 ILLSGDKKGQVGVWDFYKVSEKIVYGNI------------------------HSCIVN--NIRFNPT--NDGTVYAASS- 235 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~~v~--~~~~~~~--~~~~l~s~~~- 235 (546)
.+.||+..|.|+|+-+.+++.+..+.-. ..+... .+.+... ++++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678888999999998888776665310 001111 2222210 1667777664
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEec--CCCCEEEEEeCC-------CcEE------------EEe
Q 009022 236 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNF-------GFLY------------LVD 294 (546)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------g~i~------------i~d 294 (546)
+..|-..+++..++...+..+... .+.+++|- |+..|+++++.. |... ..|
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~--------~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQ--------AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCS--------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCc--------CcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 667888899998888877766543 47788875 678888877542 2210 112
Q ss_pred CCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEeCC---------------CeEE----------------------
Q 009022 295 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND---------------HFAR---------------------- 337 (546)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d---------------g~i~---------------------- 337 (546)
..+.+...++.. .+..-.+...+ ++.+.++.+.+ -.+.
T Consensus 224 ~~tm~v~~Qv~v----~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 224 AETMEMAFQVIV----DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp TTTCSEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred CCccEEEEEEEc----CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 222211111110 00111223344 44444444321 1233
Q ss_pred ---EEECCCCC--CCceeeecCCCCcEEEEEEeCCCCEEEEEeC-CCcEEEEECCC------CCCCCCCcceeeccCCcc
Q 009022 338 ---IWDIRRLE--AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF------GNLDSPSREIVHSHDFNR 405 (546)
Q Consensus 338 ---iwd~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~-dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~ 405 (546)
+.|.+... ....+...+.......+.++|+|+++++++. +.++.|+|+.. .+++.+...+... ..-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccC
Confidence 44443210 0111222233344567889999999887764 78999999974 2222222222222 223
Q ss_pred cCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCch
Q 009022 406 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 450 (546)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~ 450 (546)
...++..+|.++ |.... +-.-|..|..|++...
T Consensus 377 GlGPlHt~Fd~~---------G~aYT---tlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDGR---------GNAYT---TLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECSS---------SEEEE---EETTTTEEEEEEHHHH
T ss_pred CCcccEEEECCC---------CceEe---eeeecceEEEEeccHH
Confidence 456678899887 43222 3456778999999643
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.45 Score=51.83 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=121.2
Q ss_pred CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEE
Q 009022 192 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG 271 (546)
Q Consensus 192 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (546)
..+|.|.|+..+..+.... -.--+.-.+|. .+.++.-. ..++.|+|+.+...+.....+.. |.-
T Consensus 47 ~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~~e~----------Vvf 110 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP----ISADSAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTF 110 (1630)
T ss_pred CceEEEEECCCCCCccccc----ccchhhccCCC-cceEEEec-CCeEEEeehHHhhhhcccccCCC----------ceE
Confidence 3478999988766543321 11233446787 66666554 67899999998887777665432 444
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeec--CCCcEEEEEECCCCCCEEEEEe-------CCCeEEEEECC
Q 009022 272 MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR--KGSKVVGLHCNPIQPELLLSCG-------NDHFARIWDIR 342 (546)
Q Consensus 272 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~-------~dg~i~iwd~~ 342 (546)
-.|-.....-+++ +..|+.|++.....+.+....+. .+..|..-..++ +..+++..| -.|.+.+|...
T Consensus 111 WkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 111 WKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred EEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecc
Confidence 4565444333333 35899999975443333222221 134677778888 777766544 35789999986
Q ss_pred CCCCCceeeecCCCCcEEEEEEe--C-CCCEEEEEeC---CCcEEEEECCCC-CCCCCCcceeeccCCc---ccCCceeE
Q 009022 343 RLEAGSSLCDLPHKRVVNSAYFS--P-SGSKILTTSQ---DNRLRIWDSIFG-NLDSPSREIVHSHDFN---RHLTPFRA 412 (546)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~--p-~~~~l~s~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~ 412 (546)
.... +.+ -||......+... + ...+++.+.. .+.++|-++... .-..+.........+. ..-.|+.+
T Consensus 188 r~~s-Q~i--egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 188 RKVS-QPI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred cccc-hhh--hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 4322 111 1444333322221 1 1122222221 368899888543 1101110000000010 01112233
Q ss_pred EecCCCCCCceeEEeeeeeecCCCCcCcceEEEECCchhhhHhhc
Q 009022 413 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 457 (546)
Q Consensus 413 ~~~p~~~~~~~~~~g~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 457 (546)
..++..+.. |.-+.-|.|.+||+.||.++..-+
T Consensus 265 ~vs~k~g~i------------y~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 265 QISEKHDVV------------FLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EeccccCEE------------EEEecCceEEEEecccchhhhhcc
Confidence 333332111 122445789999999999887644
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.34 E-value=0.29 Score=44.30 Aligned_cols=189 Identities=13% Similarity=0.051 Sum_probs=93.3
Q ss_pred cEEEEEcCC----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCceeeeee
Q 009022 184 HILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALSLMN 254 (546)
Q Consensus 184 ~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~ 254 (546)
.+++.|+.+ ..+.+||+.+..-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-.....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-A-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-C-CEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 566666643 3688888877653322110111111122222 3 6677777754 358899998776444322
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEE
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 329 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 329 (546)
.+.. .. ....+. -++.+++.|+.++ .+.+||+.+....... ...........+.+ ++.+++.
T Consensus 95 ~p~~-----r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~ 161 (302)
T 2xn4_A 95 MRDR-----RS--TLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTRRSSVGVGVV---GGLLYAV 161 (302)
T ss_dssp CSSC-----CB--SCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSCCBSCEEEEE---TTEEEEE
T ss_pred CCcc-----cc--ceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCcccCceEEEE---CCEEEEE
Confidence 2111 11 111122 2567777776543 5788888765422110 11111111122222 5567777
Q ss_pred EeCC-------CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 330 CGND-------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 330 ~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
|+.+ ..+.+||+.+..- ..+..++....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred eCCCCCCCccccEEEEEeCCCCcE-EECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 6642 3588999865321 122122211111122222 67777887764 368899987654
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.30 E-value=0.17 Score=45.93 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCC-----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 009022 181 TNNHILLSGDKK-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLAL 250 (546)
Q Consensus 181 ~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 250 (546)
++ ++++.|+.+ ..+.+||..+..-...........-.+++.. + +.+++.|+.++ .+.+||+.+.+-.
T Consensus 61 ~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 44 678888754 3588899877653332211111111222222 3 67777777553 5788998877654
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 323 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 323 (546)
..-..+. ... -.+++. -++.+++.|+. ...+.+||+.+....... ...........+.+ +
T Consensus 138 ~~~~~p~-----~r~---~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~ 204 (302)
T 2xn4_A 138 HVAPMNT-----RRS---SVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTRRSGAGVGVL---N 204 (302)
T ss_dssp EECCCSS-----CCB---SCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE---T
T ss_pred ecCCCCC-----ccc---CceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccccccccEEEE---C
Confidence 4322111 111 111221 25666666654 246889998775422110 11111111222222 5
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCC
Q 009022 324 PELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGN 389 (546)
Q Consensus 324 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-----~i~vwd~~~~~ 389 (546)
+.+++.|+.+ ..+.+||+.+..- ..+..+.....-.+++. -++.+++.|+.++ .+.+||+.+.+
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 6777777754 3688999865321 12222221111112222 2677778877653 48888887653
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.27 E-value=0.69 Score=44.61 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=65.3
Q ss_pred eeccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--ecc-----cCCCceEEEEEecC---CCCEEEEE
Q 009022 164 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--YGN-----IHSCIVNNIRFNPT---NDGTVYAA 233 (546)
Q Consensus 164 ~~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~-----~~~~~v~~~~~~~~---~~~~l~s~ 233 (546)
..+..--...++|+|.|+| +++++-...+.|++++...+..... +.. .....+..|+|+|+ ++.+.++-
T Consensus 20 ~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3333334467899999999 6666655445788887654433221 211 12456789999994 36565555
Q ss_pred eC------------CCeEEEEECCCC--ce---eeeee-cCCCCCCCCCcccceEEEEecCCCCEEEEEe
Q 009022 234 SS------------DGTVSCTDLETG--LA---LSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 285 (546)
Q Consensus 234 ~~------------dg~i~iwd~~~~--~~---~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 285 (546)
+. ...|..|++..+ .. ...+. .... .. .....|.|.|+|.+.++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~----~~--H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS----KD--HQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC----SS--CCEEEEEECTTSCEEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC----CC--CCCCeEeECCCCeEEEEEC
Confidence 42 235666665432 11 11121 1111 11 1378899999998777754
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.26 E-value=0.77 Score=43.04 Aligned_cols=153 Identities=5% Similarity=0.001 Sum_probs=94.4
Q ss_pred cCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccC---CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCcee-----
Q 009022 179 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH---SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL----- 250 (546)
Q Consensus 179 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----- 250 (546)
+.+|..+++.. ++.||.-++.....-..+...+ -..|..+..+|+ |++||..+. ..|.|-.+..+...
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEecC-CeEEEEEecCccccCcccc
Confidence 34453444433 3678888877443333332221 236788999999 999988875 57889888743211
Q ss_pred -------eeeecCCCCCCCCCcccceEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCCcceE-------EeecCCCc
Q 009022 251 -------SLMNVNPNGWHGPRTWRMLYGMDINP---EKGVVLVADNFGFLYLVDARTNSRSGEAI-------LIHRKGSK 313 (546)
Q Consensus 251 -------~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~ 313 (546)
..+...+. ......+|..+.|+| .+..|++-..|+.|++||+.........+ ........
T Consensus 105 ~~~~~q~~ty~l~~~---~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEE---EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHTTEEEEEEGGGC---C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred cccccceeEEEcCCc---ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 12222211 111233699999999 46789999999999999998632111111 11111246
Q ss_pred EEEEEECCCCCCEEEEEe--CCCeEEEE
Q 009022 314 VVGLHCNPIQPELLLSCG--NDHFARIW 339 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~--~dg~i~iw 339 (546)
|.+++|.+ ++-.|...+ ..|.|+-.
T Consensus 182 v~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 88999998 777676655 77888764
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.21 E-value=0.18 Score=45.81 Aligned_cols=190 Identities=11% Similarity=0.052 Sum_probs=96.6
Q ss_pred CCCcEEEEEcCC----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC------CeEEEEECCCCcee
Q 009022 181 TNNHILLSGDKK----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTDLETGLAL 250 (546)
Q Consensus 181 ~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~ 250 (546)
++ .+++.|+.+ ..+.+||+.+..-...........-.+++. -+ +.+++.|+.+ ..+.+||+.+.+-.
T Consensus 55 ~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AE-GKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ET-TEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-EC-CEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 44 678888754 678889988765433321111111112222 24 6677777764 46899999887654
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC---------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 321 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p 321 (546)
..-..+.. .. ....+. -++.+++.|+. ...+.+||+.+....... ...........+.+
T Consensus 132 ~~~~~p~~-----r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-- 199 (306)
T 3ii7_A 132 TKPSMLTQ-----RC--SHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEARKNHGLVFV-- 199 (306)
T ss_dssp EECCCSSC-----CB--SCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--
T ss_pred eCCCCcCC-----cc--eeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-CccchhhcceEEEE--
Confidence 43221111 11 111122 25666666653 356889998875422110 11111111122222
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCCCCCceeeecCCC-CcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 322 IQPELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 322 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
++.+++.|+.+ ..+.+||+.+.. ...+..++.. ....++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 200 -~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 -KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 45677777643 458899986532 1112112111 11222223 67788888754 457888886543
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.02 E-value=0.23 Score=45.11 Aligned_cols=189 Identities=11% Similarity=-0.050 Sum_probs=93.8
Q ss_pred cEEEEEcC----CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC----C-----CeEEEEECCCCcee
Q 009022 184 HILLSGDK----KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----D-----GTVSCTDLETGLAL 250 (546)
Q Consensus 184 ~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~~~~ 250 (546)
.+++.|+. -..+.+||..+..-...-.......-.+++.. + +.+++.|+. + ..+.+||+.+.+-.
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 57777763 23688899877543222110111111122222 3 667777665 2 46889999877644
Q ss_pred eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 251 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
.....+. ... ....+.+ ++.+++.|+.+ ..+.+||+.+....... ...........+.+ ++.
T Consensus 104 ~~~~~p~-----~r~--~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~ 170 (308)
T 1zgk_A 104 PCAPMSV-----PRN--RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVL---NRL 170 (308)
T ss_dssp ECCCCSS-----CCB--TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE---TTE
T ss_pred ECCCCCc-----Ccc--ccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceEEEEE---CCE
Confidence 3322111 111 1112222 56677776533 46889998775422110 11111111122223 456
Q ss_pred EEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 326 LLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 326 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
+++.|+.+ ..+.+||+.+..- ..+..++....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 77777654 4588999865321 111112111111122222 67777877764 568999987654
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.98 E-value=1.1 Score=42.20 Aligned_cols=200 Identities=8% Similarity=0.057 Sum_probs=124.2
Q ss_pred EEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC-Cceeeeee
Q 009022 176 LEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMN 254 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 254 (546)
.-.+|.. +++|.=. ..++.|+|+++...+.... ....|.--+|.. .+.|+..+. ..|+-|++.. ..+...+.
T Consensus 71 AIMnP~~-~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis--~~~l~lVT~-taVyHWsi~~~s~P~kvFd 143 (494)
T 1bpo_A 71 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFD 143 (494)
T ss_dssp EEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEE--TTEEEEECS-SEEEEEESSSSCCCEEEEE
T ss_pred eeeCCCC-cEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecC--CCeEEEEcC-CeeEEecccCCCCchhhee
Confidence 3456766 4555544 5799999999988777764 455777778876 456666654 5799999974 34455554
Q ss_pred cCCCCCCCCCcccceEEEEecCCCCEEEEEe-------CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC--CCCCC
Q 009022 255 VNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN--PIQPE 325 (546)
Q Consensus 255 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~--p~~~~ 325 (546)
.+..- ....|.....+++.++++..+ -.|.+.+|....... ....+|.+....+.+. +....
T Consensus 144 R~~~L-----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 144 RHSSL-----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp CCGGG-----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEE
T ss_pred cchhc-----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc----chheeeeeeeEEEecCCCCCCce
Confidence 44321 113577778888888877643 237888998876432 1333442222222222 10112
Q ss_pred EEEEEeC---CCeEEEEECCCCC-CCcee-----ee-c---CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 326 LLLSCGN---DHFARIWDIRRLE-AGSSL-----CD-L---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 326 ~l~~~~~---dg~i~iwd~~~~~-~~~~~-----~~-~---~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
+|..+.. .+.++|.++.... ....+ .. + .......++..++....+..-+.-|.|++||+.++.++
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 3444433 2789999986431 11111 11 1 12445568899998888999999999999999998763
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.81 E-value=1.2 Score=41.34 Aligned_cols=152 Identities=8% Similarity=-0.039 Sum_probs=78.7
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEe-C-----
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVAD-N----- 286 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-~----- 286 (546)
....|+|.|+ ++.|+.+...|.|++++.. +.....+...... . .........|+++|+ +..|.++. .
T Consensus 19 ~P~~i~~~pd-G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v-~-~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPD-NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDV-W-AHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECST-TCCEEEEETTTEEEEEETT-TEECCCCBSCCCC-C-CSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCC-CCEEEEEeCCceEEEEeCC-CceeeEecCCccc-c-cCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4578999999 7734455667999999853 3322111110000 0 001123688999996 55555443 2
Q ss_pred --CCcEEEEeCCCCCC-C---cceEEeec----CCCcEEEEEECCCCCCEEEEEeC-------------CCeEEEEECCC
Q 009022 287 --FGFLYLVDARTNSR-S---GEAILIHR----KGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRR 343 (546)
Q Consensus 287 --dg~i~i~d~~~~~~-~---~~~~~~~~----~~~~i~~~~~~p~~~~~l~~~~~-------------dg~i~iwd~~~ 343 (546)
...|..|++..... . ..++.... .......|+|.| ++.++++.+. .|.|.-++...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 23566666643211 1 11111100 011245799999 8866555433 24677777643
Q ss_pred CCC-----------CceeeecCCCCcEEEEEEeC-CCCEEEE
Q 009022 344 LEA-----------GSSLCDLPHKRVVNSAYFSP-SGSKILT 373 (546)
Q Consensus 344 ~~~-----------~~~~~~~~~~~~v~~~~~~p-~~~~l~s 373 (546)
.-. ...+...++. ....++|+| .+.++++
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 200 1122223443 467899999 5655544
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.78 E-value=0.65 Score=42.33 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=91.0
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC----CC-------eEEEEECCCCceeee
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DG-------TVSCTDLETGLALSL 252 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 252 (546)
.+++.|+. .+.+||..+.+-...................+ +.+++.|+. ++ .+.+||+.+.+-...
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 45566654 48889988766433211111111222223344 778888873 11 277888887765433
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 325 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 325 (546)
-..+. ... -.+++.. ++.+++.|+.+ ..+.+||+.+.+..... ........-..+.+ ++.
T Consensus 94 ~~~p~-----~r~---~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~ 160 (318)
T 2woz_A 94 PPLPS-----ARC---LFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVISH---NGM 160 (318)
T ss_dssp SCBSS-----CBC---SCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEEE---TTE
T ss_pred CCCCc-----ccc---ccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEEE---CCE
Confidence 22111 111 1112221 56677777653 35788888765422100 00000001112222 567
Q ss_pred EEEEEeC------CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCC
Q 009022 326 LLLSCGN------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 389 (546)
Q Consensus 326 ~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~~ 389 (546)
+++.|+. -..+.+||+.+.. ...+..+.....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 7777764 2358999987532 1122222211111122222 67777777653 347788887654
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.76 E-value=0.64 Score=42.30 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=94.2
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeC-----C------CeEEEEECCCCceeee
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-----D------GTVSCTDLETGLALSL 252 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~ 252 (546)
.+++.|+ ..+.+||..+..-...-...............+ +.+++.|+. . ..+.+||+.+.+-...
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 3566676 479999998876433221111122222233344 778888873 1 1277889887764332
Q ss_pred eecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
-..+. .+. -.+++. -++.+++.|+.+ ..+.+||+.+.+-.... ...........+.+ ++
T Consensus 83 ~~~p~-----~r~---~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~---~~ 149 (315)
T 4asc_A 83 PPLPS-----PRC---LFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYVVYGHTVLSH---MD 149 (315)
T ss_dssp CCBSS-----CEE---SCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE---TT
T ss_pred CCCCc-----chh---ceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCcccceeEEEE---CC
Confidence 21111 110 111222 256666666632 46899998875421110 11111111122222 55
Q ss_pred CEEEEEeC------CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCC
Q 009022 325 ELLLSCGN------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN-----RLRIWDSIFGN 389 (546)
Q Consensus 325 ~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg-----~i~vwd~~~~~ 389 (546)
.+++.|+. -..+.+||+.+..- ..+..++....-.+++.. ++++++.|+.++ .+.+||+.+.+
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 67777775 24688999865321 112112111111122222 677788887654 47888887654
No 329
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.72 E-value=2.4 Score=44.15 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 249 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (546)
...|+||.-..+| . |-.|+.+| |..||-................|.++....+ ..|..|+.+| +..||..+...
T Consensus 21 ~n~V~~I~qD~~G-~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~--g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEG-L-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDN--TYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTS-C-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETT--TEEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCC-C-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCC--CcEEEEeCCC-eEEEeCCCCEE
Confidence 4579999999888 3 44555666 6667743211110000112346888776654 4677777665 78999887643
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcc-eEEeecCCCcEEEEEECCCCCCEEE
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE-AILIHRKGSKVVGLHCNPIQPELLL 328 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~ 328 (546)
.. .... . ...|.++.. .++ .|.+++.. -|..|+..+.....- ..........|.++...+ ++.+.+
T Consensus 95 ~~----~~~~---~--~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi 161 (758)
T 3ott_A 95 EQ----PETD---F--PTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV 161 (758)
T ss_dssp CC----CSCC---C--CSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE
T ss_pred EC----cccC---C--CceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE
Confidence 32 1000 0 113666654 344 56666665 688888866432110 000001123688888876 666555
Q ss_pred EEeCCCeEEEEECCCCCCCceeeecC----CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCC
Q 009022 329 SCGNDHFARIWDIRRLEAGSSLCDLP----HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 389 (546)
Q Consensus 329 ~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~ 389 (546)
|+.. -|..|+..+... ..+.... ....|.++...+++..|..|+. +-|..++..+++
T Consensus 162 -gt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 162 -GTYN-GLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp -EETT-EEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred -EeCC-CHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4444 577888754321 1111000 1234888888877776666654 458888876654
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.70 E-value=0.73 Score=42.55 Aligned_cols=143 Identities=10% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCCeEEEEECCC--CceeeeeecCCCCCCCCCcccceEEEEecC--CCC-EEEEE-eC--CCcEEEEeCCCCCCCcceEE
Q 009022 235 SDGTVSCTDLET--GLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKG-VVLVA-DN--FGFLYLVDARTNSRSGEAIL 306 (546)
Q Consensus 235 ~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~l~~~-~~--dg~i~i~d~~~~~~~~~~~~ 306 (546)
.+|.|.++|+.+ ++. ..+......+ .........|.+.+ ++. +|+++ .. ...|.+|++...........
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~--~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTL--DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSC--CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCC--CcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 588999999874 232 2222211000 00111366777655 343 34444 33 45777777665433222222
Q ss_pred ee--cCCCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCC
Q 009022 307 IH--RKGSKVVGLHCNPIQPELLLSCG-----------------NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 367 (546)
Q Consensus 307 ~~--~~~~~i~~~~~~p~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~ 367 (546)
.. ..-...+.+.+.+ ++.++++.. ..|.|+.|+.. + ...+ ...-...+.++|+|+
T Consensus 158 ~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~--~~~l~~pNGia~spD 231 (355)
T 3sre_A 158 TIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVV--AEGFDFANGINISPD 231 (355)
T ss_dssp EECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEE--EEEESSEEEEEECTT
T ss_pred ccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEe--ecCCcccCcceECCC
Confidence 11 1223578999998 888777654 12556666652 1 1111 122345689999999
Q ss_pred CCEEEEEe-CCCcEEEEECC
Q 009022 368 GSKILTTS-QDNRLRIWDSI 386 (546)
Q Consensus 368 ~~~l~s~s-~dg~i~vwd~~ 386 (546)
++.|+++. ..+.|..|++.
T Consensus 232 g~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCeEEEEEEC
Confidence 98877665 46889999986
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.65 E-value=1.2 Score=40.16 Aligned_cols=199 Identities=9% Similarity=0.076 Sum_probs=123.1
Q ss_pred EEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC-Cceeeeeec
Q 009022 177 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNV 255 (546)
Q Consensus 177 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 255 (546)
-.+|.. +++|.-. ..++.|+|+++...+.... ....|.--+|.. .+.|+..+. ..|+-|++.. ..+...+..
T Consensus 73 IMnP~~-~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis--~~~L~lVT~-taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 73 IMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECS--SSEEEEEES-SEEEEEESSTTCCCEEEEEC
T ss_pred eeCCCc-cEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecC--CCeEEEEcC-CcEEEEcccCCCCCceeeec
Confidence 347776 5665554 5789999999988877764 456788888876 456666654 5799999974 345555544
Q ss_pred CCCCCCCCCcccceEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE--CCCCCCE
Q 009022 256 NPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPEL 326 (546)
Q Consensus 256 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~ 326 (546)
+..- . ...|.....+++.++++..+- .|.+.+|...... .....+|.+....+.+ ++....+
T Consensus 146 ~~~L-~----~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~ieGhaa~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 146 HSSL-A----GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTL 216 (365)
T ss_dssp CGGG-T----TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEECCSEEEEEEECCTTCSSCEEE
T ss_pred chhc-c----cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc----cceeeeeeeeeEEEecCCCCCCceE
Confidence 4321 1 135777778888887776532 3788899887642 1133344212212221 1101123
Q ss_pred EEEEeC---CCeEEEEECCCCC-CCcee-----ee-cC---CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 327 LLSCGN---DHFARIWDIRRLE-AGSSL-----CD-LP---HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 327 l~~~~~---dg~i~iwd~~~~~-~~~~~-----~~-~~---~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
|+.+.. .+.++|.++.... ....+ .. ++ ......++..++....+..-+.-|.|++||+.++.++
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 333332 2589999985431 11111 11 11 2445567889998888999999999999999998763
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.49 E-value=0.53 Score=42.84 Aligned_cols=192 Identities=9% Similarity=-0.010 Sum_probs=92.7
Q ss_pred CCCCcEEEEEcC-----C------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC--------CeEE
Q 009022 180 PTNNHILLSGDK-----K------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--------GTVS 240 (546)
Q Consensus 180 ~~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~ 240 (546)
.++ ++++.|+. . ..+.+||..+..-...........-.+++.. + +.+++.|+.+ ..+.
T Consensus 44 ~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 44 KEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp TTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEE
T ss_pred ECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEE
Confidence 345 67777773 1 1277788876543221100011111122222 3 6677777632 4589
Q ss_pred EEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecCCCcE
Q 009022 241 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSKV 314 (546)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i 314 (546)
+||+.+.+-...-..+. ... -.+++ ..++++++.|+. -..+.+||+.+..-.... .........
T Consensus 121 ~~d~~~~~W~~~~~~p~-----~r~---~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~ 190 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPY-----VVY---GHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTARSLF 190 (315)
T ss_dssp EEETTTTEEEECCCCSS-----CCB---SCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSCCBSC
T ss_pred EECCCCCcEeECCCCCC-----ccc---ceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCchhce
Confidence 99998875443222111 110 11122 235667777765 247899998875422110 111111112
Q ss_pred EEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC-----------
Q 009022 315 VGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN----------- 378 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg----------- 378 (546)
.++.+ ++.+++.|+.++ .+.+||+.+.. ...+..++....-.+++.. ++.+++.|+.++
T Consensus 191 ~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 191 GATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp EEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEE
T ss_pred EEEEE---CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCcccccc
Confidence 22233 557777777654 58889986532 1222222211111122222 667777777632
Q ss_pred ---cEEEEECCCCC
Q 009022 379 ---RLRIWDSIFGN 389 (546)
Q Consensus 379 ---~i~vwd~~~~~ 389 (546)
.|.+||+.+.+
T Consensus 266 ~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 266 ELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEEETTTTE
T ss_pred ccCcEEEecCCCCh
Confidence 36778876543
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.033 Score=51.08 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEE---ecCCCCEEEEE-eCCCcEEEEeCCCCCCCc
Q 009022 227 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD---INPEKGVVLVA-DNFGFLYLVDARTNSRSG 302 (546)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 302 (546)
+.+++.++.||.|+-+|..+|+.+..+..... . ++.... ...++..++.. +.||.|+.++..++....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~---~-----p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF---Q-----PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGS---C-----CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc---C-----CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 45789999999999999999999988865410 0 011100 00122333333 689999999987763221
Q ss_pred ceEEee--cCCCcEEEEEECC--------CCCCEEEEEeCCCeEEEEECCCCCC
Q 009022 303 EAILIH--RKGSKVVGLHCNP--------IQPELLLSCGNDHFARIWDIRRLEA 346 (546)
Q Consensus 303 ~~~~~~--~~~~~i~~~~~~p--------~~~~~l~~~~~dg~i~iwd~~~~~~ 346 (546)
.. ... ....++.. .-.| ..+..+++|+.+|.+...|+++++.
T Consensus 82 ~~-~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 82 PL-SIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp EE-EHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred ee-ccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 11 100 01112221 1001 0345788999999999999987654
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.30 E-value=0.41 Score=43.43 Aligned_cols=188 Identities=9% Similarity=-0.044 Sum_probs=93.0
Q ss_pred cEEEEEcC----C-----CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-----CeEEEEECCCCce
Q 009022 184 HILLSGDK----K-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLA 249 (546)
Q Consensus 184 ~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 249 (546)
++++.|+. + ..+.+||+.+..-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-D-GHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-T-TEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-C-CEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 67777775 2 4688899877543222110111111122222 3 6677776643 4688999987764
Q ss_pred eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCC
Q 009022 250 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 324 (546)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 324 (546)
......+.. .. ....+.+ ++.+++.|+.+ ..+.+||+.+....... ...........+.+ ++
T Consensus 150 ~~~~~~p~~-----r~--~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~ 216 (308)
T 1zgk_A 150 HLVAPMLTR-----RI--GVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNTIRSGAGVCVL---HN 216 (308)
T ss_dssp EECCCCSSC-----CB--SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE---TT
T ss_pred eECCCCCcc-----cc--ceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCCccccceEEEE---CC
Confidence 433221111 11 1112222 56777777654 46889998765422110 11111111222333 55
Q ss_pred CEEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q 009022 325 ELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 388 (546)
Q Consensus 325 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d-----g~i~vwd~~~~ 388 (546)
.+++.|+.+ ..+.+||+.+..- ..+..+.....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 777777754 4689999865321 111112111111122222 67777777754 34777887654
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.28 E-value=1.2 Score=40.47 Aligned_cols=192 Identities=10% Similarity=0.023 Sum_probs=91.3
Q ss_pred CCCCcEEEEEcC----CC-------cEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC-------CeEEE
Q 009022 180 PTNNHILLSGDK----KG-------QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-------GTVSC 241 (546)
Q Consensus 180 ~~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~i 241 (546)
.++ .+++.|+. ++ .+.+||..+..-...........-.+++.. + +.+++.|+.+ ..+.+
T Consensus 55 ~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEE
T ss_pred ECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C-CEEEEEcCccCCCCcccceEEE
Confidence 345 67888873 11 167788776543222110111111122222 3 6677777753 35888
Q ss_pred EECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCcceEEeecCCCcEE
Q 009022 242 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRKGSKVV 315 (546)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~i~ 315 (546)
||+.+.+-...-..+.. . .-.+++. .++.+++.|+. ...+.+||+.+....... ..........
T Consensus 132 yd~~~~~W~~~~~~p~~-----r---~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~ 201 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIK-----V---YGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTPRSMFG 201 (318)
T ss_dssp EETTTTEEEEECCCSSC-----E---ESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSCCBSCE
T ss_pred EeCCCCCEeECCCCCCc-----c---cccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCCcccce
Confidence 89887765433211111 0 0111222 45666677653 246899999875422110 1111111112
Q ss_pred EEEECCCCCCEEEEEeCC-----CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCC-------------
Q 009022 316 GLHCNPIQPELLLSCGND-----HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD------------- 377 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~d------------- 377 (546)
.+.+ ++.+++.|+.+ ..+.+||+.+.. ...+..++....-.+++. -++.+++.|+.+
T Consensus 202 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 202 VAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp EEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCB
T ss_pred EEEE---CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccce
Confidence 2222 55777777643 357789986532 112222221111112222 256777777654
Q ss_pred -CcEEEEECCCCC
Q 009022 378 -NRLRIWDSIFGN 389 (546)
Q Consensus 378 -g~i~vwd~~~~~ 389 (546)
..+.+||+.+.+
T Consensus 277 ~~~v~~yd~~~~~ 289 (318)
T 2woz_A 277 VNDIWKYEDDKKE 289 (318)
T ss_dssp CCCEEEEETTTTE
T ss_pred eeeEEEEeCCCCE
Confidence 346777776543
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.23 E-value=1.8 Score=39.74 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=84.8
Q ss_pred CceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEE---eCCC
Q 009022 215 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVA---DNFG 288 (546)
Q Consensus 215 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg 288 (546)
.....|+|.|+ +.+|++--..|.|++++...+..........-. .........|+++|+ +..|.+. ...+
T Consensus 32 ~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~---~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 32 NSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVS---PSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCC---CBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCcee---ecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 45679999999 877766655899999987666543222111100 011124789999995 4445443 2345
Q ss_pred cEEEEeCCCCC----C---CcceEE-ee-cCCCcEEEEEECCCCCCEEEEEeC-------------CCeEEEEECCCCCC
Q 009022 289 FLYLVDARTNS----R---SGEAIL-IH-RKGSKVVGLHCNPIQPELLLSCGN-------------DHFARIWDIRRLEA 346 (546)
Q Consensus 289 ~i~i~d~~~~~----~---~~~~~~-~~-~~~~~i~~~~~~p~~~~~l~~~~~-------------dg~i~iwd~~~~~~ 346 (546)
.|.-|.+.... . ...++. .. ........|.|.| ++.++++.+. .|.|.-++....-.
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 66666665421 1 111111 11 1111345799999 8887776542 35555555532100
Q ss_pred ------CceeeecCCCCcEEEEEEeCCCCEEEEE
Q 009022 347 ------GSSLCDLPHKRVVNSAYFSPSGSKILTT 374 (546)
Q Consensus 347 ------~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 374 (546)
...+...+|.. ...++|+|++.++++=
T Consensus 187 ~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 187 PGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp TTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred CCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 11233446653 5689999988766553
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.034 Score=50.94 Aligned_cols=200 Identities=13% Similarity=-0.014 Sum_probs=102.1
Q ss_pred cEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEe--cCCCCEEEEE-eCCCeEEEEECCCCceeeeeecCCCCC
Q 009022 184 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAA-SSDGTVSCTDLETGLALSLMNVNPNGW 260 (546)
Q Consensus 184 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (546)
.+++.++.||.|.-+|..+++....+......++....-. +.++..++.. +.||.|..++..+|.....+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv- 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV- 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence 3688899999999999999998888753311233221100 1112333333 57999999999888655444322100
Q ss_pred CCCCcccceEE---EEe-----cCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCC----CcEEEEEEC----CCCC
Q 009022 261 HGPRTWRMLYG---MDI-----NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG----SKVVGLHCN----PIQP 324 (546)
Q Consensus 261 ~~~~~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~i~~~~~~----p~~~ 324 (546)
. ..++.. ..+ ...+..+++|+.+|.+...|+.+++............ ....|.... ...+
T Consensus 90 -~---~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 90 -S---TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -T---TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -e---ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 0 000110 000 0146678899999999999999988665331111000 000111110 0023
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCce-eeec-CCCC--cE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 325 ELLLSCGNDHFARIWDIRRLEAGSS-LCDL-PHKR--VV-NSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 325 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~--~v-~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
..|+.+..+..+.+.+ +++..... +... +... .+ .+-..+.++.+ +.++.||.|.-+|..+|..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred CeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 5677777777777766 33211000 0000 0000 00 00000123555 4578899999999887764
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.08 E-value=0.79 Score=50.02 Aligned_cols=199 Identities=9% Similarity=0.082 Sum_probs=115.7
Q ss_pred EcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCC-ceeeeeecC
Q 009022 178 FHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVN 256 (546)
Q Consensus 178 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~ 256 (546)
.+|.. +++|.-. ..++.|+|+.+...+.... ...+|.--+|... +.|+..+. ..|.-|++... .+...+..+
T Consensus 73 MnP~~-~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~--~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 73 MNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred cCCCc-ceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC--CeeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 46665 4555443 5789999999877776653 4556777788753 45555553 57999999642 333333333
Q ss_pred CCCCCCCCcccceEEEEecCCCCEEEEEe-------CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEE--CCCCCCEE
Q 009022 257 PNGWHGPRTWRMLYGMDINPEKGVVLVAD-------NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC--NPIQPELL 327 (546)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~l 327 (546)
..- ....|..-..+++.++++..+ -.|.+.+|........ ...+|.+....+.. .+....++
T Consensus 146 ~~L-----~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSL-----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhc-----ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhHhhhheeccCCCCCCceEE
Confidence 211 113577777788888877643 3478889988764321 11222111111111 11111222
Q ss_pred EEEeC---CCeEEEEECCCC-CCCceee------ecC---CCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 009022 328 LSCGN---DHFARIWDIRRL-EAGSSLC------DLP---HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 392 (546)
Q Consensus 328 ~~~~~---dg~i~iwd~~~~-~~~~~~~------~~~---~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~ 392 (546)
..+.. .+.++|.++... .....+. .++ ......++..++....+...+.-|.|.+||+.++.++.
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 22221 268889888543 1111111 011 23344578888877788888899999999999998754
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.04 E-value=0.9 Score=42.17 Aligned_cols=96 Identities=9% Similarity=-0.088 Sum_probs=47.4
Q ss_pred CCCcEEEEEcCC-CcEEEEeCCCCceeEEeccc-C-CCc-eEEEEEecCCCCEEEEEeC-C---------CeEEEEECCC
Q 009022 181 TNNHILLSGDKK-GQVGVWDFYKVSEKIVYGNI-H-SCI-VNNIRFNPTNDGTVYAASS-D---------GTVSCTDLET 246 (546)
Q Consensus 181 ~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~-~-~~~-v~~~~~~~~~~~~l~s~~~-d---------g~i~iwd~~~ 246 (546)
++ ++++.|+.+ ..+.++|+.+.......... . ... -.+++.. + +.+++.|+. + ..+.+||+.+
T Consensus 19 ~~-~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 ND-TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TT-EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T-TEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CC-EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C-CEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 44 677777643 46888888642222221111 1 111 1122222 3 667777765 2 4688999988
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 287 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 287 (546)
.+-.......+.. . .-.++.. .++++++.|+.+
T Consensus 96 ~~W~~~~~~~p~~----r---~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMG----M---AGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSC----C---SSEEEEE-ETTEEEEEECCC
T ss_pred CcEEECCCCCCcc----c---ccceEEE-ECCEEEEEeCcC
Confidence 7644332221011 0 1112222 567777888754
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.04 E-value=1.4 Score=42.49 Aligned_cols=168 Identities=11% Similarity=0.160 Sum_probs=88.9
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC---CCEEEEEeC------
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN------ 286 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~------ 286 (546)
....|+|.|+ ++++++-...+.|++++..++........... .........+..|+|+|+ +..|.++..
T Consensus 28 ~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~-~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEI-VNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTC-CCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCcc-ccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4578999999 87666655445788888765654333222211 100011124789999995 555555432
Q ss_pred -------CCcEEEEeCCCCC--C--CcceEE-ee-cCCCcEEEEEECCCCCCEEEEEeCC--------------------
Q 009022 287 -------FGFLYLVDARTNS--R--SGEAIL-IH-RKGSKVVGLHCNPIQPELLLSCGND-------------------- 333 (546)
Q Consensus 287 -------dg~i~i~d~~~~~--~--~~~~~~-~~-~~~~~i~~~~~~p~~~~~l~~~~~d-------------------- 333 (546)
...|.-|++.... . ...++. .. ........|+|.| ++.++++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccccccccccccc
Confidence 2356656553321 1 011111 11 1112578999999 88877765431
Q ss_pred ------------CeEEEEECCCCCC---------CceeeecCCCCcEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Q 009022 334 ------------HFARIWDIRRLEA---------GSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIF 387 (546)
Q Consensus 334 ------------g~i~iwd~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~l~s~s-~dg~i~vwd~~~ 387 (546)
|.|.-++....-. ...+...+|. ....++|+|++.++++-. .++.-.|.-+..
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred ccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 3444444432100 1123334554 467899999877665542 344445555544
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.91 E-value=0.8 Score=47.07 Aligned_cols=197 Identities=10% Similarity=0.074 Sum_probs=100.9
Q ss_pred cEEEEEcCC----CcEEEEeCCCCceeEEe-c-----ccCCCceEEEEEec-CCCCEEEEEeCC------CeEEEEECCC
Q 009022 184 HILLSGDKK----GQVGVWDFYKVSEKIVY-G-----NIHSCIVNNIRFNP-TNDGTVYAASSD------GTVSCTDLET 246 (546)
Q Consensus 184 ~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~~ 246 (546)
.+++.||.+ ..+.+||+.+..-.... . ......-.+++..+ + +.+++.|+.+ ..+.+||+.+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeCCC
Confidence 678888753 46888888776543332 1 01111112333333 4 7788887753 3578899887
Q ss_pred CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCcceEE--eecCCCcEEEEEECCC
Q 009022 247 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG--FLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPI 322 (546)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~p~ 322 (546)
..-...-..+. .. .-.+++...++.+++.|+.++ .+.+||+.+......... .........++.+...
T Consensus 478 ~~W~~~~~~p~-----~R---~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 478 REWSMIKSLSH-----TR---FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TEEEECCCCSB-----CC---BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CcEEECCCCCC-----Cc---ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 65443321111 00 112233324788888887654 799999987542211100 0111112233455542
Q ss_pred CCCEEEEEeC--C-----CeEEEEECCCCCC-----CceeeecC-CCCcEEEEEEeCCCCEEEEEeCC--------CcEE
Q 009022 323 QPELLLSCGN--D-----HFARIWDIRRLEA-----GSSLCDLP-HKRVVNSAYFSPSGSKILTTSQD--------NRLR 381 (546)
Q Consensus 323 ~~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~~~~v~~~~~~p~~~~l~s~s~d--------g~i~ 381 (546)
.+.+++.|+. + ..+.+||+.+..- ...+.... ....-.+++...++.+++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 2667777775 2 4688999876551 11111110 11111122333337777777743 4577
Q ss_pred EEECCCCC
Q 009022 382 IWDSIFGN 389 (546)
Q Consensus 382 vwd~~~~~ 389 (546)
+||+.+..
T Consensus 630 ~yd~~t~~ 637 (695)
T 2zwa_A 630 SLDPLSET 637 (695)
T ss_dssp EEETTTTE
T ss_pred EEECCCCe
Confidence 88876543
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.49 E-value=0.78 Score=42.59 Aligned_cols=140 Identities=8% Similarity=-0.073 Sum_probs=64.2
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC------CCcEEEEeC--CCCCCCcceEEee
Q 009022 237 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------FGFLYLVDA--RTNSRSGEAILIH 308 (546)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~~~~~~~ 308 (546)
..+.+||+.+.+-...-..+.... .-.+++. -++.+++.|+. ...+..||+ .+.... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~ 238 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGT-------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVS 238 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCC-------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCc-------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCC
Confidence 478999998876554432221110 0012222 25566666653 346778887 332211 000011
Q ss_pred cCCC--cEEEEEECCCCCCEEEEEeCC----------------------CeEEEEECCCCCCCceeeecCCCCcEEEEEE
Q 009022 309 RKGS--KVVGLHCNPIQPELLLSCGND----------------------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 364 (546)
Q Consensus 309 ~~~~--~i~~~~~~p~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 364 (546)
.... ....+.+ ++.+++.|+.+ ..+.+||+.+.. ...+..++....-.++ .
T Consensus 239 ~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~-~ 313 (357)
T 2uvk_A 239 SPDGVAGGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVS-L 313 (357)
T ss_dssp TTTCCBSCEEEEE---TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEE-E
T ss_pred CCcccccceEEEE---CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccccee-E
Confidence 0100 1112222 55677777632 257789987543 2333333221111112 2
Q ss_pred eCCCCEEEEEeCCC------cEEEEECCCCCC
Q 009022 365 SPSGSKILTTSQDN------RLRIWDSIFGNL 390 (546)
Q Consensus 365 ~p~~~~l~s~s~dg------~i~vwd~~~~~~ 390 (546)
..++++++.|+.++ .|.++++.+++.
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 23778888888653 355667776664
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.95 E-value=2.1 Score=43.91 Aligned_cols=156 Identities=10% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCCcEEEEEcCC------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCC--eEEEEECCCCceeee
Q 009022 181 TNNHILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSL 252 (546)
Q Consensus 181 ~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 252 (546)
++ ++++.||.+ ..+.+||+.+..-...-.......-.+++...+ +.+++.|+.++ .+.+||+.+..-...
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 55 678888754 357888887754322211011111122233235 78888887754 699999988764432
Q ss_pred eecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCC-------CcEEEEeCCCCCC-----CcceEEe-ecCCCcEEEEE
Q 009022 253 MNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNF-------GFLYLVDARTNSR-----SGEAILI-HRKGSKVVGLH 318 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~i~d~~~~~~-----~~~~~~~-~~~~~~i~~~~ 318 (546)
..... ..... ....++.+..+ +.+++.|+.+ ..+.+||+.+... ....... ........++.
T Consensus 529 ~~~g~--~p~~r--~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 529 TPKDE--FFQNS--LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp CCSSG--GGGSC--CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred cCCCC--CCCcc--cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 21000 00011 11223445555 6677777652 4688999988762 1111110 01111122333
Q ss_pred ECCCCCCEEEEEeC--------CCeEEEEECCCC
Q 009022 319 CNPIQPELLLSCGN--------DHFARIWDIRRL 344 (546)
Q Consensus 319 ~~p~~~~~l~~~~~--------dg~i~iwd~~~~ 344 (546)
+. ++.+++.|+. ...|.+||+.+.
T Consensus 605 ~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 605 IT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EE--TTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred eC--CCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 32 3677777774 346889998653
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.45 E-value=11 Score=38.95 Aligned_cols=201 Identities=11% Similarity=0.123 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.|.+|...+++. .|-.|+. +-|..++..+....... ......|.++...++ +. |..|+.+ -|.+++..++....
T Consensus 192 ~i~~i~~d~~~~-~lWigt~-~Gl~~~~~~~~~~~~~~-~l~~~~i~~i~~d~~-g~-lWigT~~-Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQ-CVWIGTE-GYLFQYFPSTGQIKQTE-AFHNNSIKSLALDGN-GD-LLAGTDN-GLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTT-EEEEEEE-EEEEEEETTTTEEEEEE-EEEEEEEEEEEECTT-CC-EEEEETT-EEEEECCTTSCCEE
T ss_pred eeEEEEEECCCC-EEEEEEC-CCCeEEcCCCCeEEecc-CCCCCeEEEEEEcCC-CC-EEEEeCC-ceeEEecCCCcEEE
Confidence 488888887763 3333443 45888887765432221 112345778777665 54 4455554 57888887664432
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEe-----ecCCCcEEEEEECCCCCCE
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI-----HRKGSKVVGLHCNPIQPEL 326 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~ 326 (546)
.. ........ -....|.++....++.+.+ |+..| +.++.... . ...... ......|.++.... ++.+
T Consensus 266 ~~-~~~~~~~~-l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~--~~~~~~~~~~~~~~~~~v~~i~~D~-~g~l 337 (758)
T 3ott_A 266 II-HDSRNIQS-LTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-A--LQFIPISQITGTGDGNQFYSLFRDS-KGFY 337 (758)
T ss_dssp EC-CCTTCTTS-CSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECT-TCCE
T ss_pred EE-cCCCCcCc-CCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC-c--eeEEecccCCCCCCCceEEEEEEcC-CCCE
Confidence 21 11110001 1112488888887776544 55556 55543221 1 111111 01123688888776 6665
Q ss_pred EEEEeCCCeEEEEECCCCCCCce-eeec------CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCC
Q 009022 327 LLSCGNDHFARIWDIRRLEAGSS-LCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 390 (546)
Q Consensus 327 l~~~~~dg~i~iwd~~~~~~~~~-~~~~------~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~ 390 (546)
.+ |+..| +..++..+...... .... -....|.++.-..++.+-+ |+ ++-|..|+..+++.
T Consensus 338 Wi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~ 404 (758)
T 3ott_A 338 WF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF 404 (758)
T ss_dssp EE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE
T ss_pred EE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE
Confidence 54 44444 66676543221111 1100 0124588888877776544 44 45699999876643
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.95 E-value=9.4 Score=35.00 Aligned_cols=214 Identities=11% Similarity=0.053 Sum_probs=111.6
Q ss_pred eccccCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEE--e---cccCCCceEEEEEecC---CCCEEEEEe--
Q 009022 165 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--Y---GNIHSCIVNNIRFNPT---NDGTVYAAS-- 234 (546)
Q Consensus 165 ~~~~h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~---~~~~~~~v~~~~~~~~---~~~~l~s~~-- 234 (546)
.+..--...+.|+|.|+| +++++--..|.|++++...+..... + ..........|+|+|+ ++.++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 344445577899999999 6777665589999998655443221 1 1123456889999984 243444322
Q ss_pred CCCeEEEEECCCCc--------eeeeee-cCCCCCCCCCcccceEEEEecCCCCEEEEEeC-------------CCcEEE
Q 009022 235 SDGTVSCTDLETGL--------ALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------FGFLYL 292 (546)
Q Consensus 235 ~dg~i~iwd~~~~~--------~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i 292 (546)
.++.|.-|.+..+. ....+. .... ..+ ....|.|.|+|.+.++.+. .|.|.-
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~----~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG----VIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC----SSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC----CCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 34566667665421 111111 1111 111 2457899999987776432 356666
Q ss_pred EeCCCCCCC-----cceEEeecCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCC---------------Cceee
Q 009022 293 VDARTNSRS-----GEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRLEA---------------GSSLC 351 (546)
Q Consensus 293 ~d~~~~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---------------~~~~~ 351 (546)
++....-.. ...+....+. ....++|+| ++.++++=. .++.-.|.-+..+.. ...+.
T Consensus 179 i~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred EeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 665432000 0111122222 467899999 777665532 233222222221110 11122
Q ss_pred ecCCC-CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 352 DLPHK-RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 352 ~~~~~-~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
.+.+. .....|+|. .+.+++..-..+.|....+...
T Consensus 257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 257 QWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp EECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred ecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 22222 356778886 4555555555566666666443
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.40 E-value=3 Score=40.59 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCce-----------eEEecccCCCceEEEEEecCCCCEEEEEeCCCe
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 238 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 238 (546)
......+.++|+|..++++|-.+.++.|+++..... ...-...-.......+|.++ +....+.-.|..
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~-G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR-GNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS-SEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC-CceEeeeeecce
Confidence 345567889999965566666789999999874211 11111223445688999998 755666667999
Q ss_pred EEEEECCCC
Q 009022 239 VSCTDLETG 247 (546)
Q Consensus 239 i~iwd~~~~ 247 (546)
|..|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999753
No 347
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.17 E-value=14 Score=34.29 Aligned_cols=146 Identities=8% Similarity=0.082 Sum_probs=86.6
Q ss_pred eEEEEECCCC--ceeeeeecCCCCCCCCCcccceEEEEec---CC----CCEEEEEe-CCCcEEEEeCCCCCCCcce---
Q 009022 238 TVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDIN---PE----KGVVLVAD-NFGFLYLVDARTNSRSGEA--- 304 (546)
Q Consensus 238 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~--- 304 (546)
.|.+||+.+. +.++.+.++...... ...+..+.+. +. +.++..+. ..+-|.++|+.+++.....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~---~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK---PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC---GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc---CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 5778999998 888888776543222 2357778777 22 34444444 4678999999886533211
Q ss_pred --------EEeec----CCCcEEEEEECCCC----CCEEEEEeCCC-eEEEEE---CCCCCCCceeeecCCC---CcEEE
Q 009022 305 --------ILIHR----KGSKVVGLHCNPIQ----PELLLSCGNDH-FARIWD---IRRLEAGSSLCDLPHK---RVVNS 361 (546)
Q Consensus 305 --------~~~~~----~~~~i~~~~~~p~~----~~~l~~~~~dg-~i~iwd---~~~~~~~~~~~~~~~~---~~v~~ 361 (546)
....+ -...+..|+++| + ++.|.-....+ .++--. ++.......+..++.. ..-..
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp-~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGD-RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECC-CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred CccccCcceEECCEEeEeccCceEEEecC-CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 00000 013688899998 5 56666655444 333332 2222223334434333 33445
Q ss_pred EEEe-CCCCEEEEEeCCCcEEEEECCC
Q 009022 362 AYFS-PSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 362 ~~~~-p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+++. .+|.++++--..+.|..|+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 6776 5788888888889999999864
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.32 E-value=18 Score=32.38 Aligned_cols=172 Identities=8% Similarity=0.036 Sum_probs=89.9
Q ss_pred CCCCcEEEEEcC-CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCC--------------CeEEEEEC
Q 009022 180 PTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--------------GTVSCTDL 244 (546)
Q Consensus 180 ~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~ 244 (546)
.+|..+.++... ++.|...+.......... . . .+--++++ +.+|+-+... ..|+..++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~-~---~--~~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLS-N---D--TAMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEE-E---E--EEEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEcc-C---C--ceeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 455344444332 456666665544332222 1 1 13345787 7777666542 46777787
Q ss_pred CCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEe----CCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEEC
Q 009022 245 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 320 (546)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (546)
..+....... -.+..|+++++.|+... ....|+..++..... + .+..+. + ..++
T Consensus 96 dg~~~~~l~~--------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~--~lt~~~--~--~~~~ 153 (302)
T 3s25_A 96 NGHGSTVLDP--------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--K--KIKNHY--L--FTCN 153 (302)
T ss_dssp TSCCCEEEEC--------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--E--EEESSC--C--CCSE
T ss_pred CCCcceEeec--------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--E--EEeCCC--c--eEee
Confidence 7665333221 12336778888888776 344566666654321 1 222221 1 3455
Q ss_pred CCCCCEEEEEeC-CCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCC--cEEEEECCC
Q 009022 321 PIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN--RLRIWDSIF 387 (546)
Q Consensus 321 p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg--~i~vwd~~~ 387 (546)
| .+..|+-.+. ...|++.++..... ..+ .. .... ..++|++.+|+-....+ .|..-++..
T Consensus 154 ~-~g~~iy~t~~g~~~Iy~~~l~g~~~-~~l--~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 154 T-SDRYFYYNNPKNGQLYRYDTASQSE-ALF--YD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp E-ETTEEEEECTTTCCEEEEETTTTEE-EEE--EC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred E-ECCEEEEEeCCCceEEEEECCCCCE-EEE--eC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 6 5666665443 67888888764332 122 11 2222 34668888887665443 455555543
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.70 E-value=16 Score=35.02 Aligned_cols=109 Identities=11% Similarity=0.186 Sum_probs=60.8
Q ss_pred ceEEEEecCCCC-EEEEEeCCCcEEEEeCCCCCCCcceEEe----e-----cCCCcEEEEEECCCC----CCEEEEEeC-
Q 009022 268 MLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILI----H-----RKGSKVVGLHCNPIQ----PELLLSCGN- 332 (546)
Q Consensus 268 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~-----~~~~~i~~~~~~p~~----~~~l~~~~~- 332 (546)
..+.|+|.|++. .|+++...|.|++++.........+... . ........|+++| + +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P-~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP-NYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT-THHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC-CCcCCCEEEEEEeCC
Confidence 378899999996 5667778899999975432111111111 1 0123578999998 4 333333221
Q ss_pred -C----------CeEEEEECCCCC-------CCceeeec---CCCCcEEEEEEeCCCCEEEEEeCC
Q 009022 333 -D----------HFARIWDIRRLE-------AGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQD 377 (546)
Q Consensus 333 -d----------g~i~iwd~~~~~-------~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~s~d 377 (546)
+ ..|.-|.+.... ....+... ........|.|.|+|.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 134446654210 11222222 122346789999999887776653
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.31 E-value=24 Score=32.90 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=70.0
Q ss_pred ceEEEEEecCC-CCEEEEEeCCCeEEEEECCCCceeeeeec---CCCC--C-----CCCCcccceEEEEecCC-CCEEEE
Q 009022 216 IVNNIRFNPTN-DGTVYAASSDGTVSCTDLETGLALSLMNV---NPNG--W-----HGPRTWRMLYGMDINPE-KGVVLV 283 (546)
Q Consensus 216 ~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~--~-----~~~~~~~~v~~~~~~~~-~~~l~~ 283 (546)
.|.+|++.|.+ ...|.+++..+.|...+ +.++.-..+.. .+.. + .+......+.+|.+.|. ...|++
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 57789998742 45566665555555443 22332222211 0000 0 00001124788889873 455555
Q ss_pred EeCCCcEEEEeCCCCCCCcceEE-eec---------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec
Q 009022 284 ADNFGFLYLVDARTNSRSGEAIL-IHR---------KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL 353 (546)
Q Consensus 284 ~~~dg~i~i~d~~~~~~~~~~~~-~~~---------~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 353 (546)
+...+.|+..+-. ++....... ... ....+.+|.+.|.++..|+++...+ |...+-. ......+
T Consensus 195 g~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~----G~tW~~~ 268 (394)
T 3b7f_A 195 GMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR----EGVWKRI 268 (394)
T ss_dssp EEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT----TTEEECG
T ss_pred EECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC----CCcceEC
Confidence 5544545443221 111110000 000 0125889999985557777776544 4444321 1222221
Q ss_pred ----CC--CCcEEEEEEeC-CCCEEEEE
Q 009022 354 ----PH--KRVVNSAYFSP-SGSKILTT 374 (546)
Q Consensus 354 ----~~--~~~v~~~~~~p-~~~~l~s~ 374 (546)
.. ...+.++.++| +...|.++
T Consensus 269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 269 GDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp GGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 11 03456788887 44444444
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.34 E-value=17 Score=34.98 Aligned_cols=111 Identities=10% Similarity=0.037 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCC-cEEEEEcCCCcEEEEeCCCCc---eeEEec----c----cCCCceEEEEEecC---CCCEEEEEeC
Q 009022 171 RRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKVS---EKIVYG----N----IHSCIVNNIRFNPT---NDGTVYAASS 235 (546)
Q Consensus 171 ~~V~~l~~~~~~~-~~l~s~~~d~~i~iwd~~~~~---~~~~~~----~----~~~~~v~~~~~~~~---~~~~l~s~~~ 235 (546)
..-+.|+|.|+|. ++|+ +...|.|++++..... .+..+. . .....+..|+|+|+ ++.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4667999999984 4555 4567999999754321 112211 1 11456889999985 2344444332
Q ss_pred --C----------CeEEEEECCCC--------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC
Q 009022 236 --D----------GTVSCTDLETG--------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 287 (546)
Q Consensus 236 --d----------g~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 287 (546)
+ ..|.-|.+..+ .....+..... ...+ ....|.|.|+|.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~---~~~H--~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL---HRKH--LGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES---SSSS--CEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC---CCcc--cCCcEeECCCCcEEEEeCCC
Confidence 1 14545665421 11111221110 1111 36789999999877766543
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=81.96 E-value=33 Score=31.94 Aligned_cols=193 Identities=11% Similarity=0.029 Sum_probs=88.9
Q ss_pred EEEEEcCCCcEEEEeCCC-CceeEEe-cccCCCceEEEEEecCCCCEEEEEeCCC----eEEEEECCCCceeeeeecCCC
Q 009022 185 ILLSGDKKGQVGVWDFYK-VSEKIVY-GNIHSCIVNNIRFNPTNDGTVYAASSDG----TVSCTDLETGLALSLMNVNPN 258 (546)
Q Consensus 185 ~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~ 258 (546)
.|..|+..| +.+++... +..-..+ .......|.+|++.|.+...|.+++..| .|... .+.+..-..+....
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~- 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP- 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC-
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc-
Confidence 466677666 55554332 1111111 0123457999999983344555555444 34333 23333322222110
Q ss_pred CCCCCC------cccceEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCcceEEe----------------ecCCCcE
Q 009022 259 GWHGPR------TWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILI----------------HRKGSKV 314 (546)
Q Consensus 259 ~~~~~~------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~i 314 (546)
.+.... ....|.++++.|. ...|.+++..+.|+..+-.. ......... ......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG-~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHG-ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTT-SBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCC-CCeEECcCccCCccccccccccccCCCCCCce
Confidence 000000 1124778888872 55666666666665543221 111111000 0112357
Q ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeee-c-----C-----CCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Q 009022 315 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-L-----P-----HKRVVNSAYFSPS-GSKILTTSQDNRLRI 382 (546)
Q Consensus 315 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-----~-----~~~~v~~~~~~p~-~~~l~s~s~dg~i~v 382 (546)
.+|.+.|.+...|+.+...+.|...+-. ++....+.. . + ....+.+|.++|. ...|+++...+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 8999988445555555545545443211 111111110 0 0 0124889999984 46676666544 444
Q ss_pred E
Q 009022 383 W 383 (546)
Q Consensus 383 w 383 (546)
.
T Consensus 258 s 258 (394)
T 3b7f_A 258 M 258 (394)
T ss_dssp E
T ss_pred e
Confidence 3
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.56 E-value=36 Score=31.52 Aligned_cols=204 Identities=9% Similarity=0.119 Sum_probs=111.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEcC--------------CCcEEEEeCCCC--ceeEEeccc-----CCCceEEEEEe---cC
Q 009022 170 SRRVTCLEFHPTNNHILLSGDK--------------KGQVGVWDFYKV--SEKIVYGNI-----HSCIVNNIRFN---PT 225 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~--------------d~~i~iwd~~~~--~~~~~~~~~-----~~~~v~~~~~~---~~ 225 (546)
--.|..+...+.+.-+++=.+. --.|.+||+.+. +.+..+... ....+..+.+. |.
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 3468888888877323332221 126889999998 776665321 23467888888 21
Q ss_pred ---CCCEEEEEe-CCCeEEEEECCCCceeeeeecCCCCCC-------CC--CcccceEEEEecCC----CCEEEEEeCCC
Q 009022 226 ---NDGTVYAAS-SDGTVSCTDLETGLALSLMNVNPNGWH-------GP--RTWRMLYGMDINPE----KGVVLVADNFG 288 (546)
Q Consensus 226 ---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~--~~~~~v~~~~~~~~----~~~l~~~~~dg 288 (546)
+..++..+. ..+-|.++|+.+++.-+.......... +. .-...+..|+++|+ ++.|......+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 023333333 367899999999987765531111100 00 00135889999998 77777776554
Q ss_pred -cEEEEe---CCCCCCCcceEEeecCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCCCceeeec---CCCCc
Q 009022 289 -FLYLVD---ARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-LEAGSSLCDL---PHKRV 358 (546)
Q Consensus 289 -~i~i~d---~~~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~---~~~~~ 358 (546)
.++-.. ++.......+......+ ..-..+++.+.++.++++--....|..|+..+ .-....+..+ ..-..
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 344333 22222222222222222 34456677643777777777889999999864 1111112222 22234
Q ss_pred EEEEEEeCCCCEEEE
Q 009022 359 VNSAYFSPSGSKILT 373 (546)
Q Consensus 359 v~~~~~~p~~~~l~s 373 (546)
+..+.+.+++.+.++
T Consensus 326 pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 326 GTDISVDSKGGLWFM 340 (381)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred cCeEEECCCCeEEEE
Confidence 566666555543333
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.39 E-value=46 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.0
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
.+.+++..++ ..++++-+.|+++++|++.+++++......
T Consensus 237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4667777777 889999999999999999999998877654
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.91 E-value=57 Score=33.35 Aligned_cols=161 Identities=9% Similarity=-0.116 Sum_probs=73.0
Q ss_pred EecCCCCEEEEEeCC----CeEEEEECCCCceeee-eecCCCCCCCCCcccceEEEEecCCCCEEEEE----------eC
Q 009022 222 FNPTNDGTVYAASSD----GTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA----------DN 286 (546)
Q Consensus 222 ~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~ 286 (546)
++|++...+++-+.. ..++++|+.+++.+.- +. + ....+.-.+.....++|..+...+++. +.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~-~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-P-ITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-C-BCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-c-ccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence 677733334444433 3699999999987631 11 0 000000000112344676444333332 12
Q ss_pred CCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCC-----EEEEEe---CCCeEEEEECCCCCCCceeeecCCCCc
Q 009022 287 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE-----LLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRV 358 (546)
Q Consensus 287 dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-----~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 358 (546)
...|+.|.+-+.......+..............++ ++. .+++.+ ....+++.+...... .+..+.....
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 291 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNL--KLQKINMPSD 291 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSC--EEEECCSCTT
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCC--cceEeecCCc
Confidence 24688888776544333322222222233445555 444 244433 224566666543211 2222211111
Q ss_pred EEEEEEeCCCCEEEEEe----------CCCcEEEEECCCC
Q 009022 359 VNSAYFSPSGSKILTTS----------QDNRLRIWDSIFG 388 (546)
Q Consensus 359 v~~~~~~p~~~~l~s~s----------~dg~i~vwd~~~~ 388 (546)
. .+..++.+.+++... ..+.|.+.++.++
T Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 330 (711)
T 4hvt_A 292 A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDL 330 (711)
T ss_dssp C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGG
T ss_pred c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcc
Confidence 1 123444565555331 3567888888654
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.25 E-value=13 Score=39.64 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=30.3
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
..+.+++..++..++++-+.|+++|+|++.+++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35777888888899999999999999999998764
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=79.12 E-value=33 Score=30.22 Aligned_cols=181 Identities=14% Similarity=0.049 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.|..|+..... .++. . ||.|..|-......+-.. ..-...|..|+.... ..+.-. +|.|+.|-....-.+.
T Consensus 64 ~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC
Confidence 56667665543 3444 4 889999976543222211 112346777776643 444445 8999999765422211
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.. ......|..++...... ++-. +|.|+.|-........... .....|..|+... ...++.
T Consensus 135 ~~---------~~~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~--~hs~al-- 195 (282)
T 3qhy_B 135 VP---------AEAQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTTVPA---EAQSGVDDVAGGI--FHSLAL-- 195 (282)
T ss_dssp CC---------GGGGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTSCCG---GGGSSEEEEEECS--SEEEEE--
T ss_pred CC---------ccCCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCCCce---ecCCCeEEEEecC--CEEEEE--
Confidence 10 00112366665544332 2233 7999999876543332111 1123688887764 233333
Q ss_pred CCCeEEEEECCCCCC-CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 009022 332 NDHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 386 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~ 386 (546)
.+|.|+.|=...... .... .....|..|+...... ++. . +|.|..|=..
T Consensus 196 ~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n 245 (282)
T 3qhy_B 196 KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSS 245 (282)
T ss_dssp ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTT
T ss_pred ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCC
Confidence 599999997654322 1111 1223466776644333 333 3 9999999654
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.61 E-value=42 Score=29.55 Aligned_cols=183 Identities=11% Similarity=0.007 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceee
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 251 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (546)
.|..|+..... .++. . ||.|+.|-......+-.. ......|..|+.... ..++. . ||.|+.|-....-.+.
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 46666665432 3443 4 889999976543322211 112346777776543 33333 4 8999999765432221
Q ss_pred eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcceEEeecCCCcEEEEEECCCCCCEEEEEe
Q 009022 252 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 331 (546)
.. . .....|..++.... ..++-+ +|.|+.|-.......... ......|..++... .+.+.-.
T Consensus 96 ~P----~-----~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~---~~~~~~i~~i~~G~---~~~~~l~ 157 (282)
T 3qhy_B 96 VP----A-----EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP---AEAQSGVTALDGGV---YTALAVK 157 (282)
T ss_dssp CC----G-----GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC---GGGGSSEEEEEECS---SEEEEEE
T ss_pred CC----c-----ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC---ccCCCCeEEEEccc---CEEEEEE
Confidence 10 0 00113666665544 333344 899999987654333211 11223677877754 3333334
Q ss_pred CCCeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 332 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 332 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+|.|+.|-........ + .......|..|+...... ++. .+|.|..|=...
T Consensus 158 -~G~v~~wG~n~~gqlg-~-p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTT-V-PAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNR 207 (282)
T ss_dssp -TTEEEEEECCTTSTTS-C-CGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCT
T ss_pred -CCEEEEecCCCCCCCC-C-ceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCC
Confidence 7999999875422211 1 111234577777654333 333 599999997543
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.67 E-value=52 Score=29.74 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=91.8
Q ss_pred CCeEEEEEcC---CCCcEEEEEcCCCcEEEEeCCCCce-----eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEE
Q 009022 171 RRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSE-----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 242 (546)
Q Consensus 171 ~~V~~l~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 242 (546)
..|.++..-+ +. .+++..+..|.|+.-.+..... ...+.......+..+..... ...|+..+..|.+..+
T Consensus 95 e~i~~~~~~~~~~~e-~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~-~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDA-PYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSA-GDDLLLVSANGQSIRF 172 (327)
T ss_dssp CCEEEEEEESSTTSS-SEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECT-TCEEEEEETTSEEEEE
T ss_pred CEEEEEEEeccCCCC-CEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecC-CCEEEEEECCCeEEEE
Confidence 3455543333 34 5899999999999987654221 11111112445555555555 6778888888998888
Q ss_pred ECC--CCce-------eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcc----e--EEe
Q 009022 243 DLE--TGLA-------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE----A--ILI 307 (546)
Q Consensus 243 d~~--~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~--~~~ 307 (546)
... .-.. ...+.+.. ...|.++...+.+.+++..+..|.++...+........ . +..
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~--------~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l 244 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNI--------DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMY 244 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCT--------TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCC
T ss_pred ECcccccCcCCcCCCCeeeecCCC--------CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEe
Confidence 766 2111 11111111 12466666666677899999999999887644322111 1 112
Q ss_pred ecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Q 009022 308 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 342 (546)
Q Consensus 308 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 342 (546)
....+.+..+.... ....++..+..|.+..+...
T Consensus 245 ~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 245 DRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred cCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 22133455554444 44566667778888888764
No 360
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=73.45 E-value=50 Score=29.43 Aligned_cols=175 Identities=9% Similarity=0.025 Sum_probs=92.7
Q ss_pred EEEcCCCCcEEEEEcCC-------------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEEe----CCCe
Q 009022 176 LEFHPTNNHILLSGDKK-------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----SDGT 238 (546)
Q Consensus 176 l~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~ 238 (546)
--++++|+.+..+...+ ..|+..++......... . .. +..|+++ +..|+-.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~---~~--~~~~s~~-g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-P---DP--CIYASLI-GNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-C---SC--EEEEEEE-TTEEEEEEESSSSCEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-c---CC--ccEEEEe-CCEEEEEeecCCCCce
Confidence 44578885444444433 46777777766533332 1 11 2367777 77777665 3445
Q ss_pred EEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCcceEEeecCCCcEEEE
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGL 317 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 317 (546)
|...++...... .+.... + ..++++++.|+-.+. ...|+..++...... . .... ... .
T Consensus 131 Iy~~~~dGs~~~-~lt~~~-----------~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~--l~~~--~~~-~ 189 (302)
T 3s25_A 131 LYRIRIDGEEKK-KIKNHY-----------L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--L--FYDC--NCY-K 189 (302)
T ss_dssp EEEEETTSCCCE-EEESSC-----------C--CCSEEETTEEEEECTTTCCEEEEETTTTEEE--E--EECS--CEE-E
T ss_pred EEEEECCCCCeE-EEeCCC-----------c--eEeeEECCEEEEEeCCCceEEEEECCCCCEE--E--EeCC--Ccc-c
Confidence 666676644332 222211 1 345777888887665 678888888764422 1 1121 222 2
Q ss_pred EECCCCCCEEEEEeCC--CeEEEEECCCCCCCceeeecCCCCcEEEEEEeCCCCEEEEEeC--CCcEEEEECC
Q 009022 318 HCNPIQPELLLSCGND--HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ--DNRLRIWDSI 386 (546)
Q Consensus 318 ~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~--dg~i~vwd~~ 386 (546)
.+.| .+.+|+-.... ..|..-++..... .. +. ...+ ..|+|++.+|+-++. .+.|..-++.
T Consensus 190 ~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~-~~---Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 190 PVVL-DDTNVYYMDVNRDNAIVHVNINNPNP-VV---LT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEE-ETTEEEEEEGGGTTEEEEECSSSCCC-EE---CS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eeee-cCCEEEEEEcCCCcEEEEEECCCCCe-EE---Ee-CCCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 3558 67777665543 3566666643221 11 21 2233 347888888876533 2445554543
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=72.49 E-value=95 Score=32.22 Aligned_cols=161 Identities=13% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEeccc------CCCceEEEEEecCCCCEEEEEeCCC-----e
Q 009022 170 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTNDGTVYAASSDG-----T 238 (546)
Q Consensus 170 ~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg-----~ 238 (546)
.+.|.+|+++|..+..++.++..+.|...+= .+..-..+... ....|.+|++.|.+...++.+.... .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4589999999976556777776666655542 22211112110 1246999999986445555554321 1
Q ss_pred EEEEECCCCceeeeeecCCCCCCC-CCcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEee---cCCCc
Q 009022 239 VSCTDLETGLALSLMNVNPNGWHG-PRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIH---RKGSK 313 (546)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~ 313 (546)
..+...+.|+.-..+...... .. ......+..+++.|. ...++++...+.|+. ....++......... .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~-~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPM-GANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCC-CTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCccc-CccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 223344445443333221100 00 000012456777774 455666654444332 222222211110000 11135
Q ss_pred EEEEEECCCCCCEEEEEeCC
Q 009022 314 VVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~d 333 (546)
+..+.+.|.++..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 78899998666666666654
No 362
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=71.63 E-value=99 Score=32.08 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=77.3
Q ss_pred CCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCC-CCEEEEEeCCCc---
Q 009022 214 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGF--- 289 (546)
Q Consensus 214 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~--- 289 (546)
...|.+|+++|.+...+++++..+.|...+ +.|+.-..+..... ........+.+|++.|. ...++++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~--~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIE--AQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCC--GGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCC--cccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 468999999998667788888777665554 33433222211110 00001125889999884 344555543211
Q ss_pred -EEEEeC-CCCCCCcceEEee-c------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeec----CCC
Q 009022 290 -LYLVDA-RTNSRSGEAILIH-R------KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHK 356 (546)
Q Consensus 290 -i~i~d~-~~~~~~~~~~~~~-~------~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~ 356 (546)
-.||-. ..++... ..... . ....+..++++|.+...++.+...+.|.. ....++.-..+... ...
T Consensus 91 ~~~v~~S~DgG~TW~-~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFT-IYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEEEEESSTTSEEE-EEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred ccEEEEECCCCCcce-eccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 233322 2222111 11110 0 00134567888755667777664444321 12212222222111 112
Q ss_pred CcEEEEEEeC-CCCEEEEEeCC
Q 009022 357 RVVNSAYFSP-SGSKILTTSQD 377 (546)
Q Consensus 357 ~~v~~~~~~p-~~~~l~s~s~d 377 (546)
..+..|.++| ++..++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 4578899998 45556665544
No 363
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.56 E-value=96 Score=31.87 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=56.8
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc--c----CCCceEEEEEecCCCCEEEEEeCC-------Ce
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN--I----HSCIVNNIRFNPTNDGTVYAASSD-------GT 238 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~s~~~d-------g~ 238 (546)
.|..|+++|..+..|..+...+.|..++=.. ..-..+.. . ....|.+|+++|.+.+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G-~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPST-ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTT-TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCC-CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7999999998655566676556665554222 21111211 1 124589999999645555554421 01
Q ss_pred EEEE-ECCCCceeeeeecCCCCCCC-CCcccceEEEEecCC-CCEEEEEeCC
Q 009022 239 VSCT-DLETGLALSLMNVNPNGWHG-PRTWRMLYGMDINPE-KGVVLVADNF 287 (546)
Q Consensus 239 i~iw-d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d 287 (546)
..|| ..+.|+.-..+..... ... ......+..|++.|. ...++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~-~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFK-MGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSC-CCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcc-cCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 3344 3344443333322110 000 000112457888875 4566666643
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=64.21 E-value=80 Score=28.24 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=110.5
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCce-------eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCC---C--
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET---G-- 247 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~-- 247 (546)
++. .++++.+.+|.|+--.+..... ...+...-...+..+..... ...++..+..|.++-+.... .
T Consensus 6 ~~e-~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~-~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKE-NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT-HDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --C-EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCC-CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC-CCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 344 5788889999999876643211 11111112344555555555 66788888888877665431 1
Q ss_pred ----cee-eeeecCCCCCCCCCcccceEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCC---c-ceEEeecCCCcEE
Q 009022 248 ----LAL-SLMNVNPNGWHGPRTWRMLYGMDINP---EKGVVLVADNFGFLYLVDARTNSRS---G-EAILIHRKGSKVV 315 (546)
Q Consensus 248 ----~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~---~-~~~~~~~~~~~i~ 315 (546)
..+ ..+.+... ..|.++...+ +..+++..+..|.++...+...... . ..+.+.. +..+.
T Consensus 84 ~~~G~~i~~~l~l~~~--------e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv 154 (312)
T 1suu_A 84 ASKGQNISELINLGDQ--------EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVT 154 (312)
T ss_dssp ----CBGGGTSCCCTT--------CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEE
T ss_pred cCCCcChhhccCCCCC--------CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEE
Confidence 100 01111111 1244443332 4678889999999999887543211 1 1111222 34566
Q ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCC------CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 316 GLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 316 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.+.... ....++..+..|.+..+....... +.....+.....|.++...+++..|++.+..|..+...+..
T Consensus 155 ~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 155 SAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 665554 456788888999999998753111 11111223345666766655666788888999999888754
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.57 E-value=20 Score=36.32 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=26.4
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEECCCCCCC
Q 009022 357 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 391 (546)
Q Consensus 357 ~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~ 391 (546)
..|.++.+ +..++++-+.|.++|+|++.+++++
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceE
Confidence 34655555 5789999999999999999998753
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.92 E-value=35 Score=37.28 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
.+.+++..++ ..++++-+.|+++++|++.+++++......
T Consensus 239 ~~vs~~~~~~-~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETT-TTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCC-ccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4555666666 789999999999999999999998887654
No 367
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=57.79 E-value=1.8e+02 Score=30.06 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=77.0
Q ss_pred cCCCeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCceeEEecc-c----------CCCceEEEEEecCCCCEEEEEeCC-
Q 009022 169 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-I----------HSCIVNNIRFNPTNDGTVYAASSD- 236 (546)
Q Consensus 169 h~~~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----------~~~~v~~~~~~~~~~~~l~s~~~d- 236 (546)
-.+.|.+|.++|.++.++..+...|.|.... ..++.-..+.. . ....|.+|+++|.+...++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 4568999999998766677776556554433 12221111111 0 224589999998545555554321
Q ss_pred -----CeEEEEECCCCceeeeeecCCCCCCCC-CcccceEEEEecCC-CCEEEEEeCCCcEEEEeCCCCCCCcceEEee-
Q 009022 237 -----GTVSCTDLETGLALSLMNVNPNGWHGP-RTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIH- 308 (546)
Q Consensus 237 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 308 (546)
+...+...+.|+.-..+..... .... ........|++.|. ...++++...+.|+. ....++.........
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~-~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVP-MGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSC-CCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcc-cCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 1222334444543333322110 0000 00001235777774 345555555444432 222222111110000
Q ss_pred --cCCCcEEEEEECCCCCCEEEEEeCCC
Q 009022 309 --RKGSKVVGLHCNPIQPELLLSCGNDH 334 (546)
Q Consensus 309 --~~~~~i~~~~~~p~~~~~l~~~~~dg 334 (546)
.....+..|.+.|.+...++.+..++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11124788999986556566666554
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.15 E-value=1.2e+02 Score=27.93 Aligned_cols=155 Identities=8% Similarity=0.083 Sum_probs=90.5
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCC-------CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009022 223 NPTNDGTVYAASSDGTVSCTDLET-------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 295 (546)
Q Consensus 223 ~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 295 (546)
.|+ ..++++.+.+|.|+--.+.. ++-+..+...... .+..+........|+..+..|.++.+..
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D--------~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEED--------FIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCC--------CEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCC--------EEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 356 77899999999999765432 1112222222221 3555656666777888888898877654
Q ss_pred ---CCCCC------CcceEEeecCCCcEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCC----CceeeecCCCCcEE
Q 009022 296 ---RTNSR------SGEAILIHRKGSKVVGLHCNP--IQPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVN 360 (546)
Q Consensus 296 ---~~~~~------~~~~~~~~~~~~~i~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~ 360 (546)
+.... ....+.+. .+..|.++...+ ....+|+.++..|.++...+..... +.....+.....+.
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv 153 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALV 153 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEE
T ss_pred HHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEE
Confidence 22211 11111222 234566654432 1356899999999999988653322 11111222345566
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 361 SAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 361 ~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.+........|+..+..|.+..|....
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 666655566788888899888887654
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.64 E-value=1.1e+02 Score=27.23 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=89.9
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceee-------eeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009022 224 PTNDGTVYAASSDGTVSCTDLETGLALS-------LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 296 (546)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 296 (546)
|+ ..++++.+.+|.|+-..+..-.... .+..... ..+..+........++..+..|.++-+...
T Consensus 6 ~~-e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~--------D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 6 QK-ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG--------DEIVIALCVNTHDYLFMISNEGKLYLINAY 76 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT--------CCEEEEEEEETTCEEEEEETTSEEEEEEGG
T ss_pred CC-CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC--------CEEEEEEEECCCCEEEEEECCCeEEEEEHH
Confidence 44 6688899999999988765332211 1111111 135555555566778888889988877653
Q ss_pred C---C------CCCcceEEeecCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEECCCCCC----CceeeecCCCCcEEE
Q 009022 297 T---N------SRSGEAILIHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVNS 361 (546)
Q Consensus 297 ~---~------~~~~~~~~~~~~~~~i~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~ 361 (546)
. . ......+.+. .+..|.++...+. ...+|+..+..|.++...+..... +.....+.....+..
T Consensus 77 ~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~ 155 (312)
T 1suu_A 77 EIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTS 155 (312)
T ss_dssp GSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEE
T ss_pred HCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEE
Confidence 2 1 1111111222 2234555543321 356788889999999988754322 112222334556766
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 362 AYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+........++..+..|.+..+.+..
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 66665566788888999999998764
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=53.00 E-value=1.4e+02 Score=27.54 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=84.8
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCce--------eeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--------LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 287 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 287 (546)
.|..|+-. ....+.-..+|.|+.|-....-. ......-. . . ....+..++++......++-+.+
T Consensus 54 ~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~-~---~-~~~~~~~v~i~~G~~h~~al~~~ 125 (389)
T 3kci_A 54 RPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLE-S---I-QHVFIKKVAVNSGGKHCLALSSE 125 (389)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECG-G---G-TTSCEEEEEECTTCSEEEEEETT
T ss_pred ceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcc-c---c-cCCceeEEEECcCCCeEEEEcCC
Confidence 34444433 55666677889999996542111 00000000 0 0 00124456666677777788889
Q ss_pred CcEEEEeCCCCCCCc--------ceEEee-cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC------Cceee-
Q 009022 288 GFLYLVDARTNSRSG--------EAILIH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSLC- 351 (546)
Q Consensus 288 g~i~i~d~~~~~~~~--------~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~- 351 (546)
|.|+.|-....-.+. ...... .....|..|+... .+.++...+|.|+.|=...... .....
T Consensus 126 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp SCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 999999654321110 011111 1122577777643 5566666899999997543110 00000
Q ss_pred -ec--CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 352 -DL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 352 -~~--~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
.. .....|..++......+.+.-..+|.|..|=...
T Consensus 203 ~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred eEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 00 1223466666543335666667899999997543
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.82 E-value=55 Score=32.45 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=41.7
Q ss_pred eEEEEEecCCCCEEEEEeCC------------CeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEE
Q 009022 217 VNNIRFNPTNDGTVYAASSD------------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA 284 (546)
Q Consensus 217 v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 284 (546)
.-.|+|+|. +++++.-..+ ..+.+.+..+++..+.+..+.. ..++.++|+|+++.|++.
T Consensus 478 PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g--------aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--------CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT--------CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC--------ccCcCeeECCCCCEEEEE
Confidence 456899998 7766554322 3466677778887776665433 269999999999888775
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.82 E-value=67 Score=32.59 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 256 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (546)
.|.++.+ + ..++++-+.|+++|+|++.+++++......
T Consensus 223 ~Is~~~~--~-~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 223 VISCKLF--H-ERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EEEEEEE--T-TTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred eEEEecc--C-CcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 3555444 3 679999999999999999999998887773
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=50.00 E-value=2.3e+02 Score=29.04 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecC-CCCEEEEEeCC-------
Q 009022 216 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNF------- 287 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------- 287 (546)
.|..|+++|.+...++++...+.|..++- .++.-..+..... ........+.+|++.| +...++++...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~--~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQ--MDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCC--GGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccC--cccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 79999999986677777776676666543 3332222211100 0000112488999998 44455554421
Q ss_pred CcEEEEeCCCCCCCcceEEeecC-------CCcEEEEEECCCCCCEEEEEeCC
Q 009022 288 GFLYLVDARTNSRSGEAILIHRK-------GSKVVGLHCNPIQPELLLSCGND 333 (546)
Q Consensus 288 g~i~i~d~~~~~~~~~~~~~~~~-------~~~i~~~~~~p~~~~~l~~~~~d 333 (546)
+...||....+-...+....... ...+..|+++|.++..|+.+...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12344443332222222121100 01246789999777777777643
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=48.71 E-value=1.4e+02 Score=26.12 Aligned_cols=161 Identities=13% Similarity=0.057 Sum_probs=91.1
Q ss_pred CCCeEEEEEcC-CCCcEEEEEcCCCcEEEEeCCCCc----eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEEC
Q 009022 170 SRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 244 (546)
Q Consensus 170 ~~~V~~l~~~~-~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (546)
...|.++-... +. .+++..+..|.++...+.... -...+.......+..+..... ...++..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~-~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFG-NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSC-SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCC-CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEh
Confidence 34565553321 33 578889999999998875432 111111112345555555554 668888888999888875
Q ss_pred CCC-------ceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCcc----eEEeecCCCc
Q 009022 245 ETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE----AILIHRKGSK 313 (546)
Q Consensus 245 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~ 313 (546)
..- .-...+.+... ..|.++...+++..++..+..|.++...+........ .... ...+.
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~--------d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~ 215 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKN--------DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDT 215 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTT--------CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSC
T ss_pred hhCCCcCCCCCCEEEEccCCC--------CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCc
Confidence 321 11111222111 2366665556677899999999999887654222111 1112 23345
Q ss_pred EEEEEECCCCCCEEEEEeCCCeEEE--EECC
Q 009022 314 VVGLHCNPIQPELLLSCGNDHFARI--WDIR 342 (546)
Q Consensus 314 i~~~~~~p~~~~~l~~~~~dg~i~i--wd~~ 342 (546)
+..+.... ....++..+..|.+.. ++..
T Consensus 216 lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 216 LVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 55554433 3456666777888877 7764
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=48.00 E-value=1.5e+02 Score=26.36 Aligned_cols=246 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-------CceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeC-
Q 009022 224 PTNDGTVYAASSDGTVSCTDLET-------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA- 295 (546)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~- 295 (546)
|+ ..++++.+.+|.|+--.+.. +.-+..+...... .+..+........|+..+..|.++-+..
T Consensus 1 ~~-e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D--------~l~~~~~~~~~~~ll~fT~~G~~~~~~~~ 71 (307)
T 1zi0_A 1 TQ-EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED--------FIDRLLVANTHDHILCFSSRGRVYSMKVY 71 (307)
T ss_dssp CC-CEEEEEEETTSEEEEEECC--------------------C--------CEEEEEEEETTCEEEEEETTSEEEEEEGG
T ss_pred CC-CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC--------EEEEEEEECCCCEEEEEECCCEEEEEEhh
Q ss_pred --------CCCCCCcceEEeecCCCcEEEEEEC--CCCCCEEEEEeCCCeEEEEECCCCCC----CceeeecCCCCcEEE
Q 009022 296 --------RTNSRSGEAILIHRKGSKVVGLHCN--PIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVNS 361 (546)
Q Consensus 296 --------~~~~~~~~~~~~~~~~~~i~~~~~~--p~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~ 361 (546)
..+......+.+.....-+..+... + +..+++..+..|.++...+..... +.....+.....+..
T Consensus 72 elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~ 150 (307)
T 1zi0_A 72 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIG 150 (307)
T ss_dssp GSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCC-TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEE
T ss_pred HCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCC-CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEE
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCCCCCCCcceeeccCCcccCCceeEEecCCCCCCceeEEeeeeeecCCCCcCcc
Q 009022 362 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHP 441 (546)
Q Consensus 362 ~~~~p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~d~~ 441 (546)
+........|+..+..|.+..+....-........-.....+...-..+.+...+. +..+. ..+..|.
T Consensus 151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~---------~~~ll---~~T~~G~ 218 (307)
T 1zi0_A 151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG---------DGAIL---TATQNGY 218 (307)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS---------SCEEE---EEETTSE
T ss_pred EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC---------CCEEE---EEEcCCc
Q ss_pred eEEEEC---------CchhhhHhhcCCCCCcccceeeecCCCcEEEEecCCcEEEEcCCC
Q 009022 442 IDFIDI---------TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKE 492 (546)
Q Consensus 442 i~iwd~---------~~~~~~~~~~~~~~~~i~~v~~~s~~~~~l~sgsdg~i~vwd~~~ 492 (546)
++-.++ ..|.....+.... +.+..+....++..+++...+|.+.-+.+..
T Consensus 219 ~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~-~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRATKGVISIKVTERN-GLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEECGGGSCCCCTTSCCEESSCCCTTT-CSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEHHHhccCCCCCCCEEeeEecCCC-CeEEEEEEeCCCceEEEEcCCCcEEEEeccc
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.69 E-value=65 Score=31.94 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=38.0
Q ss_pred CeEEEEEcCCCCcEEEEEcCC------------CcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKK------------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
..=-|+|+|.| ++++.-..+ ..+.+.+..+++....+.......++.++|+|+ ++.|++.
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD-g~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC-CCEEEEE
Confidence 34568999999 555543322 234555666666555554445678999999999 6655543
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.36 E-value=1.1e+02 Score=30.21 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=41.7
Q ss_pred ceEEEEEecCCCCEEEEEeC------------CCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEE
Q 009022 216 IVNNIRFNPTNDGTVYAASS------------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 283 (546)
Q Consensus 216 ~v~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 283 (546)
....|.|.++ +.+.++... .+.|..++..+++....+..+.. ..++.++|+||++.|++
T Consensus 477 sPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~--------aEpnGiafSPD~ktLfV 547 (592)
T 4a9v_A 477 SPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--------CEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT--------CEEEEEEECTTSSEEEE
T ss_pred CCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC--------ccccCCEECCCCCEEEE
Confidence 4567899998 777664321 12577777777876665543221 25899999999998887
Q ss_pred Ee
Q 009022 284 AD 285 (546)
Q Consensus 284 ~~ 285 (546)
+-
T Consensus 548 ~v 549 (592)
T 4a9v_A 548 GI 549 (592)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.85 E-value=18 Score=39.54 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=30.4
Q ss_pred cccceeeecCCCcEEEEec-CCcEEEEcCCCCCccceeec
Q 009022 463 TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKE 501 (546)
Q Consensus 463 ~i~~v~~~s~~~~~l~sgs-dg~i~vwd~~~~~~~~~~~~ 501 (546)
.+.++ +..++..+|++-+ |+++|||++.+++++.+...
T Consensus 239 ~~vs~-~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISM-IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCC-EEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEe-eccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 34444 5677889999988 99999999999988877553
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.84 E-value=1.7e+02 Score=25.51 Aligned_cols=203 Identities=12% Similarity=0.043 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCcEEEEEcCCCcEEEE---eCCCCceeEEecccCCCceEEEEEecC-CCCEEEEEeCCCeEEEEECCC
Q 009022 171 RRVTCLEFHPTNNHILLSGDKKGQVGVW---DFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLET 246 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~s~~~d~~i~iw---d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 246 (546)
+.+..+......+. |+.-+..|.++-- ++....... + ......|..+.. ++ ...+++.++.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~-ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEG-LFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSC-EEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCE-EEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 35555555444433 4444556666543 333221111 2 224556666644 41 267899999999999988754
Q ss_pred Cc----eeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-----cc-eEEeecCCCcEEE
Q 009022 247 GL----ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS-----GE-AILIHRKGSKVVG 316 (546)
Q Consensus 247 ~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~-~~~~~~~~~~i~~ 316 (546)
-. -...+.+... ..+..+........++..+..|.++.+....-... .. .+.+ ..+..|..
T Consensus 100 ~~~~~~G~~~i~lkeg--------D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~ 170 (276)
T 3no0_A 100 FEYKAQGMPIIKLTEG--------DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSG 170 (276)
T ss_dssp TTTCSTTEECSCCCTT--------CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEE
T ss_pred hhhhcCCeEEEecCCC--------CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEE
Confidence 32 1111111111 13555555556678889999999988875432111 10 1111 22345666
Q ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCC----CceeeecCCCCcEEEEEEeCCCCEEEEEeCCCcEEE--EECCC
Q 009022 317 LHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI--WDSIF 387 (546)
Q Consensus 317 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~i~v--wd~~~ 387 (546)
+...+ ++..++..+..|.++...+..... ..-+..+.....+..+........++..+..|.+.. +++..
T Consensus 171 ~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 171 LRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 65555 566888889999999888743221 111111223344555544444456777778888877 87653
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=42.26 E-value=2.9e+02 Score=28.10 Aligned_cols=201 Identities=10% Similarity=-0.019 Sum_probs=100.0
Q ss_pred eEEEE-EcCCCCcEEEEEcCC----CcEEEEeCCCCceeEEecc-cCCC------ceEEEEEecCCCCEEEEEe------
Q 009022 173 VTCLE-FHPTNNHILLSGDKK----GQVGVWDFYKVSEKIVYGN-IHSC------IVNNIRFNPTNDGTVYAAS------ 234 (546)
Q Consensus 173 V~~l~-~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~~l~s~~------ 234 (546)
...+. ++|++.+++++-+.. ..++++|+.+++.+..-.. .-.. ....++|..+ ..++++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCc
Confidence 33455 889996666654443 3799999998765432111 0000 1134588744 44444321
Q ss_pred ----CCCeEEEEECCCCceee--eeecCCCCCCCCCcccceEEEEecCCCCE-----EEEEe---CCCcEEEEeCCCCCC
Q 009022 235 ----SDGTVSCTDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPEKGV-----VLVAD---NFGFLYLVDARTNSR 300 (546)
Q Consensus 235 ----~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~~~~ 300 (546)
....|+.|.+-+..... .+...... ...+...++++++ +++.+ ....+++.+......
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 281 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEY--------IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL 281 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTS--------CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCc--------eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence 12568888887664332 23222211 1233445666652 33333 224566666553221
Q ss_pred CcceEEeecCCCcEEEEEECCCCCCEEEEE----------eCCCeEEEEECCCCCC-------CceeeecCCCCcEEEEE
Q 009022 301 SGEAILIHRKGSKVVGLHCNPIQPELLLSC----------GNDHFARIWDIRRLEA-------GSSLCDLPHKRVVNSAY 363 (546)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~----------~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~ 363 (546)
....+.... .. .+..++ .+.+++.. ...+.|.+.++.+... ...+........+..+.
T Consensus 282 --~~~~l~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (711)
T 4hvt_A 282 --KLQKINMPS-DA-TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIS 356 (711)
T ss_dssp --EEEECCSCT-TC-EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEE
T ss_pred --cceEeecCC-cc-eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEE
Confidence 111111111 11 122233 44444422 2467799999876421 11222223445677888
Q ss_pred EeCCCCEEEEEeCCCc--EEEEECCCC
Q 009022 364 FSPSGSKILTTSQDNR--LRIWDSIFG 388 (546)
Q Consensus 364 ~~p~~~~l~s~s~dg~--i~vwd~~~~ 388 (546)
|..+ .++++...++. |.++++.++
T Consensus 357 ~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 357 TTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp ECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred EECC-EEEEEEEECCEEEEEEEECCCC
Confidence 8765 56677766764 667776555
No 381
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=41.82 E-value=2.3e+02 Score=26.83 Aligned_cols=158 Identities=9% Similarity=0.045 Sum_probs=76.3
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCCc-----eeeeeecCCCCCCCCCcccceEEEEecCC---------CCEEEEEe
Q 009022 220 IRFNPTNDGTVYAASSDGTVSCTDLETGL-----ALSLMNVNPNGWHGPRTWRMLYGMDINPE---------KGVVLVAD 285 (546)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~ 285 (546)
..++ . ..+.+..+. ..+.||...... .-..+.++... ........++.+.+. ...+++..
T Consensus 43 g~i~-~-~GyAlvv~~-~~l~VW~y~~~~~~~~~~c~~lpLp~sd---~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsp 116 (450)
T 1xks_A 43 INID-E-GGWACLVCK-EKLIIWKIALSPITKLSVCKELQLPPSD---FHWSADLVALSYSSPSGEAHSTQAVAVMVATR 116 (450)
T ss_dssp EEEC-T-TSEEEEEET-TEEEEEECCSSCCGGGCCEEEEECCCCS---SCCCGGGEEEEECC-------CTTEEEEEECT
T ss_pred EEEC-C-CcEEEEEeC-CeEEEEeecCCCCCCcccceeccCCccc---cccCCcEEEEEcCCCccccccCCCceEEEEcC
Confidence 3455 4 555555554 479999987651 11122333221 111111333333222 22444444
Q ss_pred CCCcEEEEeCCCCCCCcceEEeecCC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC-CC-------
Q 009022 286 NFGFLYLVDARTNSRSGEAILIHRKG-SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HK------- 356 (546)
Q Consensus 286 ~dg~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~------- 356 (546)
.|.|+.|.--............-.+ ..++.+.-. ++.-++.+...|.+....++ ++..-..+.+. ..
T Consensus 117 -tG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~--epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~gi~ 192 (450)
T 1xks_A 117 -EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAV--QGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLSGIG 192 (450)
T ss_dssp -TCEEEEESCTTCTTCCEEEECC----CCEEEEEEE--TTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC-----
T ss_pred -CccEEEccccCCCCceEEEEecCCCCceEEEEeec--CCceEEEEeccceEEEEEec-CCceEEEEEecCCCccccccc
Confidence 9999999755432222122222222 456666544 34555555567777777776 33322222211 00
Q ss_pred -------------C--cEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 009022 357 -------------R--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 388 (546)
Q Consensus 357 -------------~--~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~~ 388 (546)
. ...++.+...++.+++.+. +.+..|++..+
T Consensus 193 ~~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~-~~lq~W~l~~~ 238 (450)
T 1xks_A 193 RKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTS-SNISKWELDDS 238 (450)
T ss_dssp -------------CCCCEEEEEEETTTTEEEEEES-SEEEEEEECSS
T ss_pred ccccccccccCCCcceEEEEeccCCCcEEEEEEcC-CceEEEEecCC
Confidence 0 1123445556667776665 45999999443
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.76 E-value=1.9e+02 Score=25.88 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=106.3
Q ss_pred CCCCcEEEEEcCCCcEEEEeCCCCce--eEEecccCCCceEEEEEecCCCCEEEEEeCCCeEEEEECC---C------Cc
Q 009022 180 PTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE---T------GL 248 (546)
Q Consensus 180 ~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~------~~ 248 (546)
|+. .++++.+.+|.|+--.+..... .......-...+..+..... ...|+..+..|.++-+... . |.
T Consensus 3 ~~e-~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t-~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASE-DVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNT-KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCC-EEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEET-TSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCC-cEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECC-CCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 444 5788888899988765432110 00011112334545545555 6677777778887665442 1 11
Q ss_pred eeee-eecCCCCCCCCCcccceEEE-EecC--CCCEEEEEeCCCcEEEEeCCCCCCCc-----ceEEeecCCCcEEEEEE
Q 009022 249 ALSL-MNVNPNGWHGPRTWRMLYGM-DINP--EKGVVLVADNFGFLYLVDARTNSRSG-----EAILIHRKGSKVVGLHC 319 (546)
Q Consensus 249 ~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~i~~~~~ 319 (546)
++.. +.+... ..|.++ ...+ +..+++..+..|.++...+....... ..+.... ...+..+..
T Consensus 81 ~i~~~i~L~~~--------e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~ 151 (323)
T 1wp5_A 81 HIANIIPIDRD--------EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHL 151 (323)
T ss_dssp EGGGTSCCCTT--------CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEE
T ss_pred ChhhccCCCCC--------CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEE
Confidence 1111 111111 124444 3332 36689999999999998875322211 1111222 245555555
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCC------CceeeecCCCCcEEEEEEeCCCC-EEEEEeCCCcEEEEECCC
Q 009022 320 NPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 320 ~p~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~-~l~s~s~dg~i~vwd~~~ 387 (546)
.. ....|+..+.+|.+..+....-.. +.....+.....|.++...+.+. .|++.+..|..+..++..
T Consensus 152 ~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 152 TD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred eC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 44 456677888899998887643211 11111123445576765555444 788888888888877754
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.65 E-value=1.5e+02 Score=29.10 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=38.5
Q ss_pred CCeEEEEEcCCCCcEEE-EEcC-----------CCcEEEEeCCCCceeEEecccCCCceEEEEEecCCCCEEEEE
Q 009022 171 RRVTCLEFHPTNNHILL-SGDK-----------KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 233 (546)
Q Consensus 171 ~~V~~l~~~~~~~~~l~-s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 233 (546)
.....|.|.++| .+.+ +=.. ...|..++..+++....+.......++.++|+|+ ++.|+++
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD-~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCC-CCEEEEE
Confidence 456789999999 4555 4221 1246666666666554442223467899999999 6666554
No 384
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.27 E-value=2.3e+02 Score=25.44 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=96.4
Q ss_pred CCceEEEEEecC--CCCEEEEEeCCCeEEEEECCCCcee-----eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeC
Q 009022 214 SCIVNNIRFNPT--NDGTVYAASSDGTVSCTDLETGLAL-----SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 286 (546)
Q Consensus 214 ~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 286 (546)
...|.++...++ ...+++.++..|.++...+..-... ..+.+... ..+..+........|+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~--------D~lv~~~~~~~~d~ill~T~ 165 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN--------DELVGAVLCSAGDDLLLVSA 165 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT--------CCEEEEEEECTTCEEEEEET
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC--------CEEEEEEEecCCCEEEEEEC
Confidence 345555544331 2679999999999999877542221 11222111 13555555556678888999
Q ss_pred CCcEEEEeCC--CCCCCcc------eEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCC----ceee--e
Q 009022 287 FGFLYLVDAR--TNSRSGE------AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG----SSLC--D 352 (546)
Q Consensus 287 dg~i~i~d~~--~~~~~~~------~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~--~ 352 (546)
.|.+..+... .-..... .+.+ .....|.++...+ .+..|+..+..|.++.-.+...... .-+. .
T Consensus 166 ~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~ 243 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM 243 (327)
T ss_dssp TSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC
T ss_pred CCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE
Confidence 9999988876 3211111 0111 2234677777666 5668888999999998876432211 1111 1
Q ss_pred c-CCCCcEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 009022 353 L-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 387 (546)
Q Consensus 353 ~-~~~~~v~~~~~~p~~~~l~s~s~dg~i~vwd~~~ 387 (546)
+ .-...+..+........++..+..|.+.-+.+..
T Consensus 244 l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 244 YDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1 1134455555544555677777888888887654
No 385
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=36.71 E-value=3.7e+02 Score=27.63 Aligned_cols=164 Identities=13% Similarity=0.053 Sum_probs=77.0
Q ss_pred cCCCceEEEEEecCCCCEEEEEeCCCeEEEEECCCCceeeeeecCC-CCCCCCC--cccceEEEEecC-CCCEEEEEeCC
Q 009022 212 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPR--TWRMLYGMDINP-EKGVVLVADNF 287 (546)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~d 287 (546)
+-.+.|.+|.++|.+...++++...|.|.... +.|+.-..+.... ....+.. ....+.+|++.| +...++++...
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 34568999999998667787777666654443 2333322222110 0000000 112488999988 34444444321
Q ss_pred -----CcEEEEe-CCCCCCCcceEEeec------CCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCCCceeeecC
Q 009022 288 -----GFLYLVD-ARTNSRSGEAILIHR------KGS-KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP 354 (546)
Q Consensus 288 -----g~i~i~d-~~~~~~~~~~~~~~~------~~~-~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 354 (546)
....||- ...++..... .... ... ....++++|.+...++++...+.|.. ....++.-..+..+.
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~-~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~ 174 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQY-RSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLP 174 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEE-ECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSC
T ss_pred cccCCCCceEEEECCCCCCceec-cCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCc
Confidence 1133333 2223322221 1110 000 11468888855666666665544331 122222222221111
Q ss_pred ----CCCcEEEEEEeC-CCCEEEEEeCCC
Q 009022 355 ----HKRVVNSAYFSP-SGSKILTTSQDN 378 (546)
Q Consensus 355 ----~~~~v~~~~~~p-~~~~l~s~s~dg 378 (546)
....+..|+++| +...++++..++
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 123477889988 344455555554
No 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=28.41 E-value=3.5e+02 Score=24.82 Aligned_cols=204 Identities=9% Similarity=0.077 Sum_probs=102.6
Q ss_pred CeEEEEEcCCCCcEEEEEcCCCcEEEEeCCCCc-----------eeEEecccCCCceEEEEEecCCCCEEEEEeCCCeEE
Q 009022 172 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-----------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 240 (546)
Q Consensus 172 ~V~~l~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 240 (546)
.+..++++.-. ...+.-..+|.|+.|-..... .+..+.......|..|+.. ....++...+|.|+
T Consensus 106 ~~~~v~i~~G~-~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~ 181 (389)
T 3kci_A 106 FIKKVAVNSGG-KHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLY 181 (389)
T ss_dssp CEEEEEECTTC-SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEE
T ss_pred ceeEEEECcCC-CeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEE
Confidence 34455565544 345555678899999653211 1112211122356666543 45666677899999
Q ss_pred EEECCCCcee------eeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCc--------ceEE
Q 009022 241 CTDLETGLAL------SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG--------EAIL 306 (546)
Q Consensus 241 iwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~ 306 (546)
.|-....-.+ ...... ..... ....+..++........++-..+|.|+.|-....-.+. ....
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~--~v~~~-~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 258 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPK--LVEAL-QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEE--ECGGG-TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE
T ss_pred EeCCCCCCCcCCCCCcccccce--Eeccc-CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE
Confidence 9975421100 000000 00000 00135566554444566777888999999754322111 0111
Q ss_pred ee-cCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCC------Ccee--eec--CCCCcEEEEEEeCCCCEEEEEe
Q 009022 307 IH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSL--CDL--PHKRVVNSAYFSPSGSKILTTS 375 (546)
Q Consensus 307 ~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~--~~~--~~~~~v~~~~~~p~~~~l~s~s 375 (546)
.. .....|..|+... .+.++-..+|.|+.|=...... .... ... .....|..|+. -....+...
T Consensus 259 v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~ 333 (389)
T 3kci_A 259 IDSLTGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCT 333 (389)
T ss_dssp CGGGTTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEE
T ss_pred ecccCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEEC
Confidence 11 1122466666643 4555556899999997642110 0000 001 11234666655 334455557
Q ss_pred CCCcEEEEECCC
Q 009022 376 QDNRLRIWDSIF 387 (546)
Q Consensus 376 ~dg~i~vwd~~~ 387 (546)
.+|.|..|=...
T Consensus 334 ~~G~v~~wG~n~ 345 (389)
T 3kci_A 334 EDGEVYTWGDND 345 (389)
T ss_dssp TTCCEEEEECCT
T ss_pred CCCCEEEeeCCC
Confidence 899999997653
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.33 E-value=3e+02 Score=23.63 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCCCCCCCCCcccceEEEEecCCCCEEEEEeCCCcEEEEeCCC---CCCCc--
Q 009022 228 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART---NSRSG-- 302 (546)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~-- 302 (546)
..+++.+.+|.|+--....-. ...+..... ..+..+........|+..+..|.++-+.... .....
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~-~~~~~lke~--------D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~ 73 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID-APGLNYKAG--------DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 73 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC-STTSCCCTT--------CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEE
T ss_pred CEEEEEeCCCEEEEeeCCcCC-ceeccCCCC--------CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeE
Confidence 355667777877765543211 111111111 1244444444556677778888877765432 22111
Q ss_pred --ceEEeecCCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----CCceeeecCCCCcEEEEEEe-CCCCEEEEEe
Q 009022 303 --EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE----AGSSLCDLPHKRVVNSAYFS-PSGSKILTTS 375 (546)
Q Consensus 303 --~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~-p~~~~l~s~s 375 (546)
..+.+ ..+..|.++.... +..+|+.++..|.++...+.... .+.....+.....+..+... .....|+..+
T Consensus 74 i~~~i~L-~~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T 151 (256)
T 1zvt_A 74 LTGKLTL-PPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 151 (256)
T ss_dssp GGGTCCC-CTTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEE
T ss_pred eeeeecC-CCCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEc
Confidence 11122 2234677775433 56678888999999999874321 11222222233455555555 3456788888
Q ss_pred CCCcEEEEECCC
Q 009022 376 QDNRLRIWDSIF 387 (546)
Q Consensus 376 ~dg~i~vwd~~~ 387 (546)
..|.+..+.+..
T Consensus 152 ~~G~~lrf~~~e 163 (256)
T 1zvt_A 152 QAGRMLMFPVSD 163 (256)
T ss_dssp TTSEEEEEEGGG
T ss_pred CCCeEEEEEHHH
Confidence 899988888754
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.46 E-value=2.5e+02 Score=27.02 Aligned_cols=70 Identities=6% Similarity=0.017 Sum_probs=42.6
Q ss_pred cEEEEEECCC-----CCCEEEEEeCCCeEEEEECCCCCC-----Cc---eeeecCCCCcEEEEEEeCCCCEEEEEeCCCc
Q 009022 313 KVVGLHCNPI-----QPELLLSCGNDHFARIWDIRRLEA-----GS---SLCDLPHKRVVNSAYFSPSGSKILTTSQDNR 379 (546)
Q Consensus 313 ~i~~~~~~p~-----~~~~l~~~~~dg~i~iwd~~~~~~-----~~---~~~~~~~~~~v~~~~~~p~~~~l~s~s~dg~ 379 (546)
..++|+.... +-..+..|+.+|.|.-.-+..... .. .+.......+|..|.+++...+|++++..+.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 3566655431 224677888899875443321111 11 1222234678999999999999999988876
Q ss_pred EEE
Q 009022 380 LRI 382 (546)
Q Consensus 380 i~v 382 (546)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
Done!