Citrus Sinensis ID: 009022

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
MAPQTRRMAFPRVVIERDTDTEQSSSEDEEEDREEGPFSESEEEVTENGCEEKIEEDLDAKRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKRKNVRSKKSRKS
cccccccccccEEEEEEcccccccccccccccccccccccccccEEECcccccccHHHHHHccccccEEEEEccEEEccccccCCccCEEEEEEccccccCEEECcccccCEECccCCccccccccccccccccEEEEEccccCCccccccccCEEcccccccEEEEEccccEEEEEECccccCEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEcccccEEEEEEEccccccEEEEECccccEEEEEccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccccccccEEEEEcccccEEEEEEEEcccccccccEEEEEccEEccEEcccccccEEEEEcccccEEEEccccccccEEEEEEEcccccEEEECccccEEEEEccccccEEEEcccccEEEEEEEEcccccccccccccccccCEEEEcccccccccccc
******************************************************************PITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKR***********
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MAPQTRRMAFPRVVIERDTDTEQSSSEDEEEDREEGPFSESEEEVTENGCEEKIEEDLDAKRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVATEYGVTPASHRNAGNPVEYVFERQLRPNMTYMKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKRKNVRSKKSRKS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein DAMAGED DNA-BINDING 2 May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex including DDB1A and CUL4 (By similarity). Required for DNA repair. Binds to DDB1A to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair.confidentQ6NQ88

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SFZ, chain A
Confidence level:very confident
Coverage over the Query: 105-140,160-497
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Template: 4E54, chain B
Confidence level:very confident
Coverage over the Query: 164-491
View the alignment between query and template
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Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 64-84,102-139,160-508
View the alignment between query and template
View the model in PyMOL
Template: 1NR0, chain A
Confidence level:confident
Coverage over the Query: 61-139,159-491
View the alignment between query and template
View the model in PyMOL