Your job contains 1 sequence.
>009023
MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGR
GGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH
DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH
LPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGP
TAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIG
KGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK
IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDE
MVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDS
KRHGRGPPYGGYGSSDLAAGDSYGSYGSSQLGGTGSAYGSYGSYSSGRSGSGLSSHAPVS
RRKSYY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009023
(546 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 1538 7.7e-158 1
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 700 4.9e-69 1
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 289 1.4e-47 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 487 1.8e-46 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 255 1.0e-38 3
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 247 3.0e-38 2
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 375 1.3e-34 1
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 194 1.6e-18 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 221 4.3e-18 3
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 193 3.6e-12 2
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 146 8.5e-11 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 146 1.2e-10 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 132 1.3e-10 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 132 3.2e-10 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 140 3.3e-10 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 134 3.8e-10 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 140 4.2e-10 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 124 4.7e-10 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 133 5.7e-10 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 139 5.9e-10 2
TAIR|locus:2012713 - symbol:AT1G33680 "AT1G33680" species... 132 6.0e-10 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 134 6.3e-10 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 134 6.3e-10 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 134 7.0e-10 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 134 7.1e-10 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 134 7.1e-10 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 134 7.1e-10 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 134 7.1e-10 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 131 1.2e-09 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 121 1.4e-09 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 129 1.5e-09 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 124 1.9e-09 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 121 2.0e-09 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 121 3.2e-09 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 127 3.7e-09 2
TAIR|locus:2140513 - symbol:AT4G10070 "AT4G10070" species... 128 3.7e-09 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 121 8.3e-09 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 122 1.1e-08 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 121 1.3e-08 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 121 1.3e-08 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 115 1.8e-08 2
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 129 1.9e-08 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 129 1.9e-08 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 115 2.3e-08 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 115 2.3e-08 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 116 2.4e-08 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 128 2.6e-08 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 116 2.7e-08 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 115 3.2e-08 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 115 3.6e-08 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 115 3.6e-08 2
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 125 4.8e-08 2
ZFIN|ZDB-GENE-080211-1 - symbol:nova2 "neuro-oncological ... 125 5.3e-08 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 115 5.7e-08 2
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 118 5.9e-08 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 111 6.6e-08 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 115 6.7e-08 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 115 6.7e-08 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 115 6.7e-08 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 115 6.7e-08 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 115 6.7e-08 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 115 6.7e-08 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 110 7.1e-08 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 127 7.7e-08 2
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 107 9.7e-08 3
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 108 1.9e-07 3
TAIR|locus:2043530 - symbol:AT2G25970 "AT2G25970" species... 110 2.4e-07 2
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 107 3.1e-07 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 104 4.4e-07 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 104 4.4e-07 3
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 104 4.4e-07 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 104 4.4e-07 3
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 120 5.0e-07 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 118 5.7e-07 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 107 5.9e-07 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 137 6.5e-07 1
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 146 7.7e-07 1
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 146 7.8e-07 1
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 143 1.2e-06 1
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 105 1.3e-06 3
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 143 1.3e-06 1
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 143 1.3e-06 1
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 143 1.4e-06 1
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 143 1.6e-06 1
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 143 1.6e-06 1
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 142 2.1e-06 1
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 111 2.3e-06 2
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 96 2.6e-06 3
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 98 3.6e-06 3
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 103 4.4e-06 2
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 139 4.6e-06 1
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 103 5.2e-06 2
UNIPROTKB|O73932 - symbol:igf2bp3-a "Insulin-like growth ... 138 5.7e-06 1
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 123 8.9e-06 2
ZFIN|ZDB-GENE-000308-1 - symbol:igf2bp3 "insulin-like gro... 134 1.5e-05 1
UNIPROTKB|Q5ZLP8 - symbol:IGF2BP3 "Insulin-like growth fa... 102 1.5e-05 2
UNIPROTKB|J3KQU3 - symbol:NOVA1 "RNA-binding protein Nova... 100 1.8e-05 2
UNIPROTKB|G3N2N4 - symbol:NOVA1 "Uncharacterized protein"... 99 2.1e-05 2
ZFIN|ZDB-GENE-060929-1258 - symbol:igf2bp1 "insulin-like ... 99 2.1e-05 2
UNIPROTKB|F1MBI6 - symbol:NOVA1 "Uncharacterized protein"... 99 2.2e-05 2
WARNING: Descriptions of 73 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 1538 (546.5 bits), Expect = 7.7e-158, P = 7.7e-158
Identities = 298/477 (62%), Positives = 369/477 (77%)
Query: 5 RNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXX 64
R+S+ KRS Q+DY D+G +KRRY GDDRD +I +DTV+RYLCP
Sbjct: 12 RDSHRKRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDI 71
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VKQLR DT+SKIRIGE +PG +ERV+T+YS SDETNAF DG+K +SPAQDALF++HDRV+
Sbjct: 72 VKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVV 131
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
A++ R ++ +G QVTAKLLVPSDQIGC++G+GGQIVQNIRSETGAQIRI+KD ++P C
Sbjct: 132 ADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLC 191
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXLVGPTAAT 244
AL SDEL+QISGE +VKKAL QIASRLH+NPSRSQ+LL+ L+
Sbjct: 192 ALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGS---LMSHAGGP 248
Query: 245 PIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXX 304
+VG+APLMG YG AGDWSR LY PR+D + EF +RLV P
Sbjct: 249 RLVGLAPLMGSYGR----DAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGA 304
Query: 305 XXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERD 364
Q+RQE+ A IKVDSS TEG+DCLIT+S++E FED S TIEAV+RLQP+CS+K+ERD
Sbjct: 305 LINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERD 364
Query: 365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQI 424
SGL+SFTTRLLVP+SRIGC++GKGG+IITEMRR+TKANIRIL KENLPK+AS+DDEMVQI
Sbjct: 365 SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQI 424
Query: 425 SGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSK 481
SG+LD+AK+ALIQ+ +RLRAN+FDREGAVS +PVLPY+PV+ + D +Y+SRDS+
Sbjct: 425 SGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRDSR 481
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 157/353 (44%), Positives = 210/353 (59%)
Query: 5 RNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXX 64
RN +GKRS+ Q+++ +G +KRR D+ DQ +I EDTVYRYLCP
Sbjct: 6 RNIHGKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEI 65
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
KQ+R +TKS +RI E +PG EERVVT+YS ++E N F D + V PA DALFKVHD V+
Sbjct: 66 AKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVV 125
Query: 125 AEELRGD---EDSDGGHQ--VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179
A+ + D +D+D G + VT ++LVPSDQIGCVIGKGGQ++QN+R++T AQIR++KD
Sbjct: 126 ADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKD- 184
Query: 180 HLPSCALR--SDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXL 237
HLP+CAL DEL+ I GE VV++AL Q+AS LHDNPSR QHLL +
Sbjct: 185 HLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAM 244
Query: 238 VGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXX 297
+ A T S Y+ RD ++EF + +CP
Sbjct: 245 LMSAALTS----------------------SHRNYAVRRDIADAREFCVCFICPAENVGG 282
Query: 298 XXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAV 350
QIRQE+GA I+V++S T+ DDC+I +SSKEF+ED A A+
Sbjct: 283 VIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNAAI 335
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 103/209 (49%), Positives = 140/209 (66%)
Query: 272 YSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLI 331
Y+ RD ++EF + +CP QIRQE+GA I+V++S T+ DDC+I
Sbjct: 257 YAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCII 316
Query: 332 TVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSI 391
+SSKEF+ED S + A +RLQ RCSEK+ +D+ ++ +TRLLV +S+IGCLIGKGG++
Sbjct: 317 FISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAV 375
Query: 392 ITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREG 451
I+EMR +T+ANIRIL KE++PKIA ED+EMVQI+G D A AL QV+ RLRAN FD +
Sbjct: 376 ISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDH 435
Query: 452 AVSTFVPVLPYIP-VSENGSDGLNYESRD 479
+ PYIP V+E+ S Y RD
Sbjct: 436 GLVLLPTSFPYIPQVTESSSKS-KYAKRD 463
Score = 216 (81.1 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 56/175 (32%), Positives = 92/175 (52%)
Query: 47 YLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGD 106
++CP + Q+R +T + IR+ + ++ ++ + +S E +ED
Sbjct: 273 FICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFI--SSKEF--YEDQ- 327
Query: 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIR 166
SPA +A ++ R +E++ G + +D ++ +LLV S QIGC+IGKGG ++ +R
Sbjct: 328 ---SPAVNAAIRLQQRC-SEKV-GKDANDLA--ISTRLLVSSSQIGCLIGKGGAVISEMR 380
Query: 167 SETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQH 221
S T A IRIL+ E +P A +E+VQI+G KAL Q+ RL N H
Sbjct: 381 SVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDH 435
Score = 162 (62.1 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 49/185 (26%), Positives = 94/185 (50%)
Query: 279 LSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITV-SSKE 337
++S++ R +CP QIR E+ + ++++ + ++ ++T+ S+ E
Sbjct: 39 IASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNE 98
Query: 338 ----FFED--TLSATIEAVVRLQPRCSEKIERDSGLI---------SFTTRLLVPTSRIG 382
F +D + ++A+ ++ ++D G + T R+LVP+ +IG
Sbjct: 99 ELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIG 158
Query: 383 CLIGKGGSIITEMRRLTKANIRILPKENLPKIAS--EDDEMVQISGDLDLAKDALIQVMT 440
C+IGKGG +I +R T A IR++ K++LP A DE++ I G+ + ++AL QV +
Sbjct: 159 CVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVAS 217
Query: 441 RLRAN 445
L N
Sbjct: 218 LLHDN 222
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 289 (106.8 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 70/173 (40%), Positives = 105/173 (60%)
Query: 281 SKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV-DSSSTEGDDCLITVSSKEFF 339
S++ +++++C IRQ SG+ I+V DS + DDC+ITV++ E
Sbjct: 314 SEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESP 373
Query: 340 EDTLSATIEAVVRLQPRCSEKI-ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRL 398
+D S +EAV+ LQ EKI + D + +LLV + IGC+IGK GSII+E+R+
Sbjct: 374 DDLKSMAVEAVLLLQ----EKINDEDEDKVKM--QLLVSSKVIGCIIGKSGSIISEIRKR 427
Query: 399 TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF-DRE 450
TKA+I I N PK A +DE+V+ISG++ +DALIQ++ RLR ++ DRE
Sbjct: 428 TKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Score = 276 (102.2 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 76/229 (33%), Positives = 121/229 (52%)
Query: 9 GKRSHSQ--TDYADHGPNKRRYTGDDRDQFIIGPED---TVYRYLCPXXXXXXXXXXXXX 63
GKR+H++ + D+ N+RR + ++ I +D VYR LCP
Sbjct: 5 GKRTHNRFRDNNNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGK 64
Query: 64 XVKQLRIDTKSKIRIGETVPGSEERVVTVY-SASDETNA----FEDGDKFVS--PAQDAL 116
+ +R +T+++I++ + PG ERV+T++ S S++ + + + D V AQ AL
Sbjct: 65 VINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAAL 124
Query: 117 FKVHDRVIAEELRGDEDS--DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIR 174
KVHD ++A E++ D +LLVPS Q VIGK G I++NIR T A ++
Sbjct: 125 LKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVK 184
Query: 175 IL-KDEHLPS--CALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ 220
++ KD PS CA+ D +V ISGE VKKAL +++ ++ R Q
Sbjct: 185 VVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSPREQ 233
Score = 206 (77.6 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 58/180 (32%), Positives = 86/180 (47%)
Query: 41 EDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETN 100
E + +C +K +R + S I + ++ ++ V +A+
Sbjct: 315 EKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTAT---- 370
Query: 101 AFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
E D S A +A+ + +++ DED D +V +LLV S IGC+IGK G
Sbjct: 371 --ESPDDLKSMAVEAVLLLQEKI------NDEDED---KVKMQLLVSSKVIGCIIGKSGS 419
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ 220
I+ IR T A I I K + P CA +DELV+ISGE S V+ AL QI RL D+ R +
Sbjct: 420 IISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDR 479
Score = 127 (49.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 348 EAVVRLQPRCSE--KIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
+A+V +E KI+RD RLLVP+S+ +IGK GSII +R T+AN+++
Sbjct: 129 DAIVASLATAAENTKIDRDDFR---ECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKV 185
Query: 406 LPKE-NLPK--IASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGA-VSTFVPVLP 461
+ K+ + P A + D +V ISG+ + K AL V + + + RE + T V +P
Sbjct: 186 VSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAV-SAIMYKVSPREQIPLDTTVQEVP 244
Query: 462 ---YIP--VSENGSDGLNYESRDS 480
IP +S GL Y S+DS
Sbjct: 245 ASIIIPSDLSIYPQAGL-YPSQDS 267
Score = 67 (28.6 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKEN 410
S T + +P + +G ++G+GG + +RR++ A I I +N
Sbjct: 573 STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKN 614
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 287 RLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
R++CP IRQE+ A IKV
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKV 79
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 140/465 (30%), Positives = 231/465 (49%)
Query: 43 TVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAF 102
T YR LC +K +R T + I + E VPG ER++ + SD
Sbjct: 68 TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEI---SDNRRRD 124
Query: 103 EDGDK-FVSPAQDALFKVHDRVIAEELR-G------DEDSD------GGHQVTAKLLVPS 148
DG SPAQ+ALF VHDR++ E + G +E+ D GG +V +L+V
Sbjct: 125 PDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSR 184
Query: 149 DQIGCVIGKGGQIVQNIRSETGAQIRIL-KDEHLPSCALRSDELVQISGEASVVKKALCQ 207
+GC++GKGG+I++ +R ET IRIL ++ +LP C S+E+VQI GE + VK AL
Sbjct: 185 MHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAI 244
Query: 208 IASRLHDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGPYGGYKGDTAGDW 267
++SRL ++ R + G + + P G ++ +
Sbjct: 245 VSSRLRESQHRDRSNFQGRSHSPERSFAA-AGDDYMPQLRRQSSDRFPRGNFRNNNFSS- 302
Query: 268 SRSLYS--APR----DDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDS 321
+S Y+ AP +++ S+E +++CP ++ E G ++V
Sbjct: 303 RQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSD 362
Query: 322 SSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRI 381
D+ +IT+SS+E +D EA++ +Q + + I LI TTRLLVP+
Sbjct: 363 PVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDNLI--TTRLLVPSRDS 420
Query: 382 GCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441
CL GK GS+ +E+ RLT +++IL +E +P+ AS +D ++QI+G++ A++AL+++
Sbjct: 421 ICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLL 479
Query: 442 LRANLF----DRE---GAVSTFVPVLPYIPVSENGSDGLNYESRD 479
LR+++F +E + ST P+ V E S +SR+
Sbjct: 480 LRSHMFKELSQKETPPASTSTTGPLEGVAGVMEVASSNNTIQSRE 524
Score = 204 (76.9 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 60/212 (28%), Positives = 107/212 (50%)
Query: 4 QRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXX 63
+ N++ R Q++YA+ P G++ + E+ V++ LCP
Sbjct: 296 RNNNFSSR---QSNYAEEAPAVP--VGEN-----VYSEELVFQILCPADKIVRVVGESQG 345
Query: 64 XVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
+ L+ + +R+ + V GS+E+++T+ +S+E D F PAQ+AL + ++
Sbjct: 346 IIDLLQNEIGVDVRVSDPVAGSDEQIITI--SSEEA----PDDPFF-PAQEALLHIQTQI 398
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
I +L D+D+ +T +LLVPS C+ GK G V I TG ++IL E +P
Sbjct: 399 I--DLIPDKDN----LITTRLLVPSRDSICLEGKAGS-VSEISRLTGTSVQILAREEIPR 451
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDN 215
CA +D ++QI+GE ++AL ++ L +
Sbjct: 452 CASINDVVIQITGEIRAAREALVELTLLLRSH 483
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 255 (94.8 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 59/167 (35%), Positives = 95/167 (56%)
Query: 282 KEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED 341
+E + RL+CP ++ ESGA+IKV + + ++ +I +S++E E
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 342 TLSATIEAVVRLQPRCSE-KIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTK 400
S + V+R+ R E E + +++ RLLV + IG L+GKGG +I+EMRR T
Sbjct: 334 RHSLAQDGVMRVHNRIVEIGFEPSAAVVA---RLLVHSPYIGRLLGKGGHLISEMRRATG 390
Query: 401 ANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447
A+IR+ K+ K S+ DE+VQ+ G+L +DAL Q++ RLR +F
Sbjct: 391 ASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMF 437
Score = 214 (80.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 55/174 (31%), Positives = 91/174 (52%)
Query: 41 EDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETN 100
E+ +R LCP V+ L+ ++ + I++ + SEER++ + +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVI-------S 326
Query: 101 AFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
A E+ ++ S AQD + +VH+R++ E+ G E S V A+LLV S IG ++GKGG
Sbjct: 327 ARENLERRHSLAQDGVMRVHNRIV--EI-GFEPSAA---VVARLLVHSPYIGRLLGKGGH 380
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214
++ +R TGA IR+ + + DE+VQ+ G V+ AL QI RL +
Sbjct: 381 LISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 189 (71.6 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 45/137 (32%), Positives = 79/137 (57%)
Query: 83 PGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI----AEELRGDEDSDGGH 138
PGSEE S T+ +D ++ S AQ AL +V +R++ A + GDE G
Sbjct: 88 PGSEEPKQEKGSECAGTSGGDD-EEAPSSAQMALLRVFERIVFGDDAATVDGDELDKGES 146
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
+ +++V +Q+ ++ KGG+++Q IR ++GA +RI + +P CA D ++Q++G+
Sbjct: 147 EGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKF 206
Query: 199 SVVKKALCQIASRLHDN 215
S VKKAL + + L ++
Sbjct: 207 SSVKKALLLVTNCLQES 223
Score = 104 (41.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 17/41 (41%), Positives = 32/41 (78%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
+LL P+ + G +IGKGG ++++++S TG++IR++ D +PS
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPS 62
Score = 97 (39.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 362 ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM 421
E D G R++V +++ L+ KGG +I ++R + A +RI + +P A D +
Sbjct: 140 ELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVV 199
Query: 422 VQISGDLDLAKDALIQVMTRLR 443
+Q++G K AL+ V L+
Sbjct: 200 IQMNGKFSSVKKALLLVTNCLQ 221
Score = 80 (33.2 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 41 EDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVP-GSEERVVTVYSAS--- 96
E +R LCP ++ L+ T SKIR+ + +P SEERVV + + S
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKK 76
Query: 97 -DETN 100
DE+N
Sbjct: 77 KDESN 81
Score = 50 (22.7 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 15/65 (23%), Positives = 35/65 (53%)
Query: 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+ S +++P + +G + G+ S + +++++ AN+ + + PK A + +V +SG
Sbjct: 546 MTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVV----HDPK-AGTTEGLVVVSG 600
Query: 427 DLDLA 431
D A
Sbjct: 601 TSDQA 605
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 247 (92.0 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 68/217 (31%), Positives = 112/217 (51%)
Query: 10 KRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLR 69
KR Q + ++ N++R D+ I E VYR LCP + +R
Sbjct: 6 KRKQIQRNNSESNRNQKRRISHDK---INRDELVVYRILCPIDVVGGVIGKSGKVINAIR 62
Query: 70 IDTKSKIRIGETVPGSEERVVTVYSA----SDETNAFEDGDKFVSPAQDALFKVHDRVIA 125
+TK+KI++ + + G +RV+T+Y + +E + ++ + AQDAL KV+D ++A
Sbjct: 63 HNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVA 122
Query: 126 --EELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL-KDEHLP 182
EE + D +LLVP Q +IGK G+ ++ IR T A ++++ KD P
Sbjct: 123 SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDP 182
Query: 183 S--CALRSDELVQISGEASVVKKALCQIASRLHD-NP 216
S CA+ D +V ISGE VK+AL +++ ++ NP
Sbjct: 183 SHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINP 219
Score = 235 (87.8 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 63/180 (35%), Positives = 101/180 (56%)
Query: 281 SKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE-GDD-CLITVSSKEF 338
S+E +++CP +IR+ SG+ I+V+ S T+ GDD C+I V++ E
Sbjct: 309 SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATES 368
Query: 339 FEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRL 398
+D S +EAV+ LQ E I D + +LLV + IGC+IGK GS+I E+R+
Sbjct: 369 PDDMKSMAVEAVLLLQ----EYIN-DEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKR 423
Query: 399 TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVP 458
T ANI I + D++V++SG++ +DALIQ++ RLR ++ + +V+T P
Sbjct: 424 TNANICISK--------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKP 475
Score = 201 (75.8 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 86/305 (28%), Positives = 130/305 (42%)
Query: 41 EDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGE--TVPGSEERVVTVYSASDE 98
E+ V++ LCP +K++R + S I + + T G +E V+ V
Sbjct: 310 EELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIV------ 363
Query: 99 TNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKG 158
A E D S A +A+ ++ +E DED++ V +LLV S IGCVIGK
Sbjct: 364 -TATESPDDMKSMAVEAV------LLLQEYINDEDAEN---VKMQLLVSSKVIGCVIGKS 413
Query: 159 GQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
G ++ IR T A I I K + D+LV++SGE S V+ AL QI RL ++
Sbjct: 414 GSVINEIRKRTNANICISKG--------KKDDLVEVSGEVSSVRDALIQIVLRLREDVLG 465
Query: 219 SQHLLAXXXXXXXXXXXXLV------GPTAATPIVGIAPLMGPYGGYKGDTAGD---WSR 269
+ +A + G T + + +A G + GY AGD S
Sbjct: 466 DKDSVATRKPPARTDNCSFLSGSSNAGYTLPSFMSSMASTSG-FHGYGSFPAGDNVLGST 524
Query: 270 SLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDC 329
YS R SS +L ++ P IR+ SGA I++ +S T D
Sbjct: 525 GPYSYGRLPSSS---ALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDH 581
Query: 330 LITVS 334
+ +S
Sbjct: 582 IALLS 586
Score = 118 (46.6 bits), Expect = 0.00091, P = 0.00091
Identities = 36/104 (34%), Positives = 55/104 (52%)
Query: 340 EDTLSATIEAVVRLQPRCSEK--IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRR 397
+D L +A+V + K ++RD RLLVP S+ LIGK G I +RR
Sbjct: 110 QDALLKVYDAIVASDEENNTKTNVDRDDNK---ECRLLVPFSQSSSLIGKAGENIKRIRR 166
Query: 398 LTKANIRILPKE-NLPK--IASEDDEMVQISGDLDLAKDALIQV 438
T+A+++++ K+ + P A E D +V ISG+ + K AL V
Sbjct: 167 RTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAV 210
Score = 65 (27.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428
S +L+P + ++GKGG + +RR++ A I I + S D + +SG L
Sbjct: 535 SSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKT-----SHGDHIALLSGTL 589
Query: 429 DLAKDA--LIQ 437
+ + A L+Q
Sbjct: 590 EQMRCAENLVQ 600
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 80/153 (52%), Positives = 110/153 (71%)
Query: 76 IRIGETVPGSEERVVTVYSASDETNAFEDGDK-FVSPAQDALFKVHDRVIAEELRGDED- 133
+R+ E +PG +ERVVT+YS S+E N ED ++ FV PA DALFKVHD V+ EE D+D
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 134 ------SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187
S+G VT ++LVPSDQIG +IGKGG I+Q +R++T AQIR+ ++++LP CAL
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALA 119
Query: 188 --SDELVQISGEASVVKKALCQIASRLHDNPSR 218
DEL+QI G+ S V++AL Q+A L++NPSR
Sbjct: 120 LSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 149 (57.5 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 38/86 (44%), Positives = 49/86 (56%)
Query: 362 ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPK--IASEDD 419
E G T R+LVP+ +IG LIGKGG II +R T A IR+ +NLP +A D
Sbjct: 65 EYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVR-NDNLPMCALALSHD 123
Query: 420 EMVQISGDLDLAKDALIQVMTRLRAN 445
E++QI GD ++AL QV L N
Sbjct: 124 ELLQIIGDPSAVREALYQVAFLLYNN 149
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 194 (73.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 60/194 (30%), Positives = 92/194 (47%)
Query: 40 PEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSAS--- 96
P++T R +C V +LR +T +KI V GS+ VV + ++
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVN 81
Query: 97 ------DETNAFEDGDKF------VSPAQDALFKVHDR--VIAEELRGDEDSDG-GHQVT 141
D F G+ VS AQ AL +V +R V+ G DG +
Sbjct: 82 QSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAY 141
Query: 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVV 201
+L +QIG V+G GG+ V+ +R +GA IR+L P C ++DEL+QI+G+ V
Sbjct: 142 CGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAV 198
Query: 202 KKALCQIASRLHDN 215
KKAL ++S + +N
Sbjct: 199 KKALVMVSSYIQNN 212
Score = 122 (48.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
++ L+ +T + I +G + S ERVVTV +A E+ + S AQ+AL V R +
Sbjct: 299 IRALQNETGASISVGAPLKVSGERVVTV-------SARENLESRYSHAQNALALVFARSV 351
Query: 125 AEEL-RGDEDS-DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLP 182
++ +G G V KLLVPS G G + + I + TGA + I +
Sbjct: 352 EIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR--EAIIA-TGADVHISVGNQVL 408
Query: 183 SCALRSDELVQISGEASVVKKALCQIASRLHDN 215
++ +++I GE S V+KAL ++S+L +N
Sbjct: 409 EWISENEVVIEIKGEYSHVQKALTHVSSKLREN 441
Score = 106 (42.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 39/149 (26%), Positives = 71/149 (47%)
Query: 309 IRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL- 367
++ E+GA+I V + + ++TVS++E E S A+ + R S +I+ + GL
Sbjct: 302 LQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFAR-SVEIDVEKGLR 360
Query: 368 ------ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM 421
T+LLVP+ G G E T A++ I + + SE++ +
Sbjct: 361 PGLHNGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQVLEWISENEVV 417
Query: 422 VQISGDLDLAKDALIQVMTRLRANLFDRE 450
++I G+ + AL V ++LR NL ++
Sbjct: 418 IEIKGEYSHVQKALTHVSSKLRENLLPKK 446
Score = 72 (30.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 135 DGGH----QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
DGG+ +V K++ S G +IGK G I++ +++ETGA I +
Sbjct: 268 DGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
Score = 52 (23.4 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T L V +G L G+ G+ + +++++ AN+ + K + + V ISG+ +
Sbjct: 565 TLELAVEKDALGSLYGRDGTGVDNLQQISGANVDV-------KDPTGTEATVLISGNPEQ 617
Query: 431 AKDAL 435
A+ A+
Sbjct: 618 ARTAM 622
Score = 49 (22.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 320 DSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVP-- 377
+S ST+G+ EFF + S+++ + + + D G + T R +V
Sbjct: 228 ESLSTDGNS---EDPHSEFFPNLRSSSLSNATEIVAS-NRHLPYDGG--NSTERKVVFKI 281
Query: 378 --TSRI-GCLIGKGGSIITEMRRLTKANIRI 405
TS + G +IGK G+II ++ T A+I +
Sbjct: 282 IFTSVVAGGIIGKQGTIIRALQNETGASISV 312
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 221 (82.9 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 58/191 (30%), Positives = 101/191 (52%)
Query: 23 PNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETV 82
P + G + ++ P +TV+R L P +K++ +T+++I+I +
Sbjct: 167 PEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGP 226
Query: 83 PGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGD-EDSDGGHQVT 141
PG+ ER V V + E+ + + P+ D L +VH R++ + L G+ + +V+
Sbjct: 227 PGTTERAVMV-------SGKEEPESSLPPSMDGLLRVHMRIV-DGLDGEASQAPPPSKVS 278
Query: 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVV 201
+LLVP+ Q G +IGK G V+ I+ + +R+L E LP AL+ D +V++ GE + V
Sbjct: 279 TRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSV 338
Query: 202 KKALCQIASRL 212
+AL IAS L
Sbjct: 339 HRALELIASHL 349
Score = 166 (63.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 46/171 (26%), Positives = 82/171 (47%)
Query: 283 EFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDT 342
E R++ P +I +E+ A IK+ + + VS KE E +
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 343 LSATIEAVVRLQPRCSEKIERDSGLI----SFTTRLLVPTSRIGCLIGKGGSIITEMRRL 398
L +++ ++R+ R + ++ ++ +TRLLVP S+ G LIGK G + ++
Sbjct: 246 LPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEA 305
Query: 399 TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDR 449
+ +R+L E+LP A +DD +V++ G+ AL + + LR L DR
Sbjct: 306 SACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDR 356
Score = 67 (28.6 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 31/107 (28%), Positives = 47/107 (43%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM-VQISGDLD 429
T ++ +P S +IG GS I+ RRL+ A + I +P EM V++SG
Sbjct: 459 TQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVP------GEMTVEVSGT-- 510
Query: 430 LAKDALIQVMTRLRANLFDREGAVSTFVP--VLP----YIPVSENGS 470
+ +Q +L N GA + P V P Y P + +GS
Sbjct: 511 ---GSQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQGYNPYATHGS 554
Score = 41 (19.5 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 6 NSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPE 41
+ Y + + D DH + +Y +++QF + E
Sbjct: 89 HQYQLQDQANEDVQDHSQDDLQYQPQNQEQFQLQDE 124
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 193 (73.0 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 54/187 (28%), Positives = 93/187 (49%)
Query: 29 TGDDRDQFIIG-PEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEE 87
T D ++ G P D V+R + P +K++ +T+++I++ + + +
Sbjct: 59 TNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPD 118
Query: 88 RVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQV--TAKLL 145
R+V + S +E A+ +SPA DA+ +V RV D+D V + +LL
Sbjct: 119 RIVLI-SGKEEPEAY------MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLL 171
Query: 146 VPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKAL 205
V S Q +IGK G ++++I +GA +RIL +E P A + + +V + GEA + KAL
Sbjct: 172 VASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKAL 231
Query: 206 CQIASRL 212
I L
Sbjct: 232 EAIVGHL 238
Score = 153 (58.9 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 58/204 (28%), Positives = 99/204 (48%)
Query: 287 RLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSAT 346
R++ P ++ +E+ A IKV D ++ +S KE E +S
Sbjct: 77 RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPA 136
Query: 347 IEAVVRLQPRCSEKIERD------SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTK 400
++AV+R+ R S + D +G + + RLLV +++ LIGK GS+I + +
Sbjct: 137 MDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSG 196
Query: 401 ANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRANLFDREGAVSTFVPV 459
A++RIL +E P A++D+ +V + G+ L + K AL ++ LR L D T VP+
Sbjct: 197 ASVRILSEEETPFYAAQDERIVDLQGEALKILK-ALEAIVGHLRRFLVDH-----TVVPL 250
Query: 460 LP--YIP-VSENGSDGLNYESRDS 480
Y+ VS+ + ES+ S
Sbjct: 251 FEKQYLARVSQTRQEEPLAESKSS 274
Score = 42 (19.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 353 LQPRCSEKIER-DSGLISFTTRLL-VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKEN 410
L R S + R S ++ ++ + +P S +IG G+ I +RR + A I I KE+
Sbjct: 322 LSARHSPGLARVSSAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITI--KES 379
Query: 411 LPKIASEDDEMVQISGDLDLAKDA--LIQ 437
P D V+I G + A LIQ
Sbjct: 380 -PH---PDQITVEIKGTTSQVQTAEQLIQ 404
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 146 (56.5 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 50/203 (24%), Positives = 90/203 (44%)
Query: 25 KRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET--- 81
KR TG++ + F+ + L P + QL+ +T + I++ ++
Sbjct: 23 KRSNTGEEGEYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 74
Query: 82 VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQ 139
PG+ ERV V ++ NA +K V A+ K + L+ +
Sbjct: 75 YPGTTERVCLVQGTAEALNAVHSFIAEK-VREIPQAMTKPE---VVNILQPQTTMNPDRA 130
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
AKL+VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE
Sbjct: 131 KQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPE 187
Query: 200 VVKKALCQIASRLHDNPSRSQHL 222
V KA+ I ++ ++P S L
Sbjct: 188 QVHKAVSAIVQKVQEDPQSSSCL 210
Score = 80 (33.2 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 358 SEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+EK+ +S + VP + +G ++GKGG + E + LT A I+I K E LP
Sbjct: 397 AEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 450
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 146 (56.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 50/203 (24%), Positives = 90/203 (44%)
Query: 25 KRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET--- 81
KR TG++ + F+ + L P + QL+ +T + I++ ++
Sbjct: 85 KRSNTGEEGEYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 136
Query: 82 VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQ 139
PG+ ERV V ++ NA +K V A+ K + L+ +
Sbjct: 137 YPGTTERVCLVQGTAEALNAVHSFIAEK-VREIPQAMTKPE---VVNILQPQTTMNPDRA 192
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
AKL+VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE
Sbjct: 193 KQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPE 249
Query: 200 VVKKALCQIASRLHDNPSRSQHL 222
V KA+ I ++ ++P S L
Sbjct: 250 QVHKAVSAIVQKVQEDPQSSSCL 272
Score = 80 (33.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 358 SEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+EK+ +S + VP + +G ++GKGG + E + LT A I+I K E LP
Sbjct: 459 AEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 512
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 132 (51.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R ++ ++I I E GS ER+VT+ +D F + + AL K + +
Sbjct: 36 VKKMREESGARINISE---GSCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDI 83
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 84 NASMTNSTVTSKP--PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN 140
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 141 STERA---VTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 44/173 (25%), Positives = 75/173 (43%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
++R+ESGA I + S IT + F+ ++ + +
Sbjct: 38 KMREESGARINISEGSCPERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPP 97
Query: 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427
+ T RL+VP S+ G LIGKGGS I E+R T A +++ + LP + + V ISG
Sbjct: 98 V--TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG-DMLP---NSTERAVTISG- 150
Query: 428 LDLAKDALIQVMTRLRANLFDR--EGAVSTFVPVLPYIPVSENGSDGLNYESR 478
DA+IQ + ++ + + +GA + P P+ G + +
Sbjct: 151 ---TPDAIIQCVKQICVVMLESPPKGATIPYRPKPASAPIIFAGGQAFTIQGQ 200
Score = 108 (43.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + SC R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----SCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
V I+G + KA IA + ++ + S
Sbjct: 59 VTITGPTDAIFKAFSMIALKFEEDINAS 86
Score = 87 (35.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +P IGC+IG+ GS I E+R+++ A I+I N + ++E V I+G A
Sbjct: 249 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA---NATEGSAE--RQVTITGSP--ANI 301
Query: 434 ALIQVMTRLRAN 445
+L Q + RAN
Sbjct: 302 SLAQYLINARAN 313
Score = 50 (22.7 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEG 326
D +S S L P +IRQ SGA IK+ +++TEG
Sbjct: 239 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKI-ANATEG 286
Score = 44 (20.5 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFF 339
S +LRLV P +IR+ +GA ++V GD ++ S++
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----AGD--MLPNSTERAV 146
Query: 340 EDTLSATIEAVVR 352
T+S T +A+++
Sbjct: 147 --TISGTPDAIIQ 157
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 132 (51.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R ++ ++I I E GS ER+VT+ +D F + + AL K + +
Sbjct: 36 VKKMREESGARINISE---GSCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDI 83
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 84 NASMTNSTVTSKP--PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN 140
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 141 STERA---VTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 114 (45.2 bits), Expect = 0.00090, P = 0.00090
Identities = 44/173 (25%), Positives = 75/173 (43%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
++R+ESGA I + S IT + F+ ++ + +
Sbjct: 38 KMREESGARINISEGSCPERIVTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPP 97
Query: 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427
+ T RL+VP S+ G LIGKGGS I E+R T A +++ + LP + + V ISG
Sbjct: 98 V--TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG-DMLP---NSTERAVTISG- 150
Query: 428 LDLAKDALIQVMTRLRANLFDR--EGAVSTFVPVLPYIPVSENGSDGLNYESR 478
DA+IQ + ++ + + +GA + P P+ G + +
Sbjct: 151 ---TPDAIIQCVKQICVVMLESPPKGATIPYRPKPASAPIIFAGGQAFTIQGQ 200
Score = 108 (43.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + SC R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----SCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
V I+G + KA IA + ++ + S
Sbjct: 59 VTITGPTDAIFKAFSMIALKFEEDINAS 86
Score = 83 (34.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 355 PRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKI 414
P E+++ S S L +P IGC+IG+ GS I E+R+++ A I+I N +
Sbjct: 229 PGFPERLDATSPTSSH--ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA---NATEG 283
Query: 415 ASEDDEMVQISGDLDLAKDALIQVMTRLRA 444
++E V I+G A +L Q + RA
Sbjct: 284 SAE--RQVTITGSP--ANISLAQYLINARA 309
Score = 51 (23.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 276 RDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEG 326
R D +S S L P +IRQ SGA IK+ +++TEG
Sbjct: 234 RLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKI-ANATEG 283
Score = 44 (20.5 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFF 339
S +LRLV P +IR+ +GA ++V GD ++ S++
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----AGD--MLPNSTERAV 146
Query: 340 EDTLSATIEAVVR 352
T+S T +A+++
Sbjct: 147 --TISGTPDAIIQ 157
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 140 (54.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 45/182 (24%), Positives = 81/182 (44%)
Query: 46 RYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAF 102
+ L P + QL+ +T + I++ ++ PG+ ERV V ++ NA
Sbjct: 8 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 67
Query: 103 ED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
+K V A+ K + L+ + AKL+VP+ G +IGKGG
Sbjct: 68 HSFIAEK-VREIPQAMTKPE---VVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 123
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ 220
V+ + ++GA +++ + P + +V +SGE V KA+ I ++ ++P S
Sbjct: 124 TVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSS 180
Query: 221 HL 222
L
Sbjct: 181 CL 182
Score = 80 (33.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 358 SEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+EK+ +S + VP + +G ++GKGG + E + LT A I+I K E LP
Sbjct: 369 AEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 422
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 134 (52.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 142 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 105 (42.0 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEED 82
Score = 80 (33.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 243 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 277
Score = 50 (22.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 266 EIRQMSGAQIKI-ANATEGSSERQITIT 292
Score = 45 (20.9 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 82 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 134
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 135 GD--MLPNSTERAV--TISGTPDAIIQ 157
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 140 (54.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 45/182 (24%), Positives = 81/182 (44%)
Query: 46 RYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAF 102
+ L P + QL+ +T + I++ ++ PG+ ERV V ++ NA
Sbjct: 46 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 105
Query: 103 ED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
+K V A+ K + L+ + AKL+VP+ G +IGKGG
Sbjct: 106 HSFIAEK-VREIPQAMTKPE---VVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 161
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ 220
V+ + ++GA +++ + P + +V +SGE V KA+ I ++ ++P S
Sbjct: 162 TVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSS 218
Query: 221 HL 222
L
Sbjct: 219 CL 220
Score = 80 (33.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 358 SEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+EK+ +S + VP + +G ++GKGG + E + LT A I+I K E LP
Sbjct: 407 AEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 460
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 124 (48.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 109 VSPAQDALFKVHDRVIAE-ELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRS 167
VS +A+F + + E D G Q+ +L+VP+ Q G +IGK G ++ IR
Sbjct: 71 VSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 130
Query: 168 ETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
TG I++ E LP+ R+ V +SG A + + + QI + ++P R
Sbjct: 131 TTGCSIQVAS-EMLPNSTERA---VTLSGSAEQITQCIYQICLVMLESPPR 177
Score = 98 (39.6 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
+ V IGC+IGKGG+ I E+R+++ A IRI E + D + ISG+ D
Sbjct: 290 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVAL 347
Query: 434 A--LIQVMTRL-RANLFDR 449
A LI + L +ANL ++
Sbjct: 348 AQYLINMSVELQKANLLEQ 366
Score = 94 (38.1 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +L++ ++G +IGK G+IV R E+GA+I I D P + +V +SG +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI-SDGSCP------ERIVTVSGTTN 76
Query: 200 VVKKALCQIASRLHD 214
+ A I + +
Sbjct: 77 AIFSAFTLITKKFEE 91
Score = 43 (20.2 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 283 EFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDS 321
+ +RL+ P +IRQ +G +I+V S
Sbjct: 102 QIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVAS 140
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 308 QIRQESGAAIKVDS-SSTEGD--DCLITVS 334
+IRQ SGA I++ + EG D IT+S
Sbjct: 310 EIRQISGAMIRISNCEEREGGNTDRTITIS 339
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 133 (51.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 43/154 (27%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I + E ER+VT+ +D F + A A +K + +I
Sbjct: 38 VKKMREESSARINVSEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 86
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ +R TGAQ+++ D LP+
Sbjct: 87 NS--MSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDM-LPNS 143
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 144 TERA---VTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 108 (43.1 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T RL+VP S+ G LIGKGGS I EMR T A +++ + LP + + V ISG
Sbjct: 101 TLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAG-DMLP---NSTERAVTISG---- 152
Query: 431 AKDALIQVMTRLRANLFDR--EGAVSTFVPVLPYIPVSENG 469
+A+IQ + ++ + + +GA + P PV +G
Sbjct: 153 TPEAIIQCVKQICVVMLESPPKGATIPYRPKPATAPVIFSG 193
Score = 98 (39.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+ A+I + + +C R +
Sbjct: 8 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG----NCPER---I 60
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEED 84
Score = 81 (33.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D+ + T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 261 DASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 302
Score = 54 (24.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 275 PRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVS 334
P D SS+ + L P +IRQ SGA IK+ ++ D IT++
Sbjct: 258 PGVDASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITIT 317
Score = 44 (20.5 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFF 339
S +LRLV P ++R+ +GA ++V GD ++ S++
Sbjct: 96 SKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV-----AGD--MLPNSTERAV 148
Query: 340 EDTLSATIEAVVR 352
T+S T EA+++
Sbjct: 149 --TISGTPEAIIQ 159
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 139 (54.0 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 45/182 (24%), Positives = 81/182 (44%)
Query: 46 RYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAF 102
+ L P + QL+ +T + I++ ++ PG+ ERV V ++ NA
Sbjct: 60 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAA 119
Query: 103 ED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
+K V A+ K + L+ + AKL+VP+ G +IGKGG
Sbjct: 120 HSFIAEK-VREIPQAMTKPE---VVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 175
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ 220
V+ + ++GA +++ + P + +V +SGE V KA+ I ++ ++P S
Sbjct: 176 TVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSS 232
Query: 221 HL 222
L
Sbjct: 233 CL 234
Score = 106 (42.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 125 AEELRGDEDSDGGH----QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
AE DE GG + K+L+PS G +IGKGGQ + ++ ETGA I++ K +
Sbjct: 38 AESFVCDERGWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 97
Query: 181 L-PSCALRSDELVQISGEASVVKKALCQIASRLHDNP 216
P ++ + + G A + A IA ++ + P
Sbjct: 98 FYPGT---TERVCLVQGTAEALNAAHSFIAEKVREIP 131
Score = 80 (33.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 358 SEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+EK+ +S + VP + +G ++GKGG + E + LT A I+I K E LP
Sbjct: 421 AEKLAAESA--KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP 474
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 132 (51.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 53/196 (27%), Positives = 87/196 (44%)
Query: 15 QTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKS 74
+T A+ NK G D ++ PE + + + +T
Sbjct: 108 ETIDAEESDNKMEDNGKPEDNQLVTPEVVTSQDVSVEESKEVNISGSQNEGEDDSKETND 167
Query: 75 KIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAE--ELRGD- 131
+ E GS+E DE NA + K V+ + HD + E E+ G
Sbjct: 168 VVAQKEVENGSKEVTDCDSQKEDEANAGGES-KEVNGSVS-----HDEIGDESKEVNGGS 221
Query: 132 --EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD-EHLPSCALRS 188
++ D T ++ VPS ++G +IGKGG++V+ ++ +GA+I+I +D E PS ALR
Sbjct: 222 THKEVDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRP 281
Query: 189 DELVQISGEASVVKKA 204
V+I G S ++KA
Sbjct: 282 ---VEIIGTVSCIEKA 294
Score = 92 (37.4 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD---LDLAK 432
VP+ ++G +IG+GG I M+ ++A I+++P+ AS++ V+ISGD +D+A
Sbjct: 326 VPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGD--ASKE-RTVRISGDKRQIDIAT 382
Query: 433 DALIQVM 439
+ VM
Sbjct: 383 ALIKDVM 389
Score = 46 (21.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 239 GPTAATPIVGIAPLMGPYG 257
GPT A P G P YG
Sbjct: 579 GPTPAAPSYGSTPAAASYG 597
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 251 PLMGPYGGYKGDTAG 265
P+ YGGY G G
Sbjct: 522 PMHQSYGGYGGSQQG 536
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 134 (52.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 142 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 105 (42.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEED 82
Score = 80 (33.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 319
Score = 50 (22.7 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 308 EIRQMSGAQIKI-ANATEGSSERQITIT 334
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 134 (52.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 36 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 142 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 105 (42.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEED 82
Score = 80 (33.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 319
Score = 50 (22.7 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 308 EIRQMSGAQIKI-ANATEGSSERQITIT 334
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 134 (52.2 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 116
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 117 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 173
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 174 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 38 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 90
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEED 114
Score = 80 (33.2 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 294 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 328
Score = 50 (22.7 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 317 EIRQMSGAQIKI-ANATEGSSERQITIT 343
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 114 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 166
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 167 GD--MLPNSTERAV--TISGTPDAIIQ 189
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 134 (52.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 116
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 117 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 173
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 174 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 38 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 90
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEED 114
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 329
Score = 50 (22.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 318 EIRQMSGAQIKI-ANATEGSSERQITIT 344
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 114 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 166
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 167 GD--MLPNSTERAV--TISGTPDAIIQ 189
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 134 (52.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 116
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 117 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 173
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 174 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 38 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 90
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEED 114
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 329
Score = 50 (22.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 318 EIRQMSGAQIKI-ANATEGSSERQITIT 344
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 114 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 166
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 167 GD--MLPNSTERAV--TISGTPDAIIQ 189
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 134 (52.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 116
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 117 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 173
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 174 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 38 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 90
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEED 114
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 329
Score = 50 (22.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 318 EIRQMSGAQIKI-ANATEGSSERQITIT 344
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 114 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 166
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 167 GD--MLPNSTERAV--TISGTPDAIIQ 189
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 134 (52.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 68 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 116
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 117 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 173
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 174 TERA---VTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 38 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 90
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEED 114
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 329
Score = 50 (22.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 318 EIRQMSGAQIKI-ANATEGSSERQITIT 344
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 114 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 166
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 167 GD--MLPNSTERAV--TISGTPDAIIQ 189
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 131 (51.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 44/154 (28%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 38 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 86
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ +R TGAQ+++ D LP+
Sbjct: 87 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDM-LPNS 143
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V ISG + + + QI + ++P +
Sbjct: 144 TERA---VTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 105 (42.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 8 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 60
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEED 84
Score = 80 (33.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 302
Score = 45 (20.9 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVS 334
+IRQ SGA IK+ ++ + IT++
Sbjct: 291 EIRQMSGAQIKIANAMEGSSERQITIT 317
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 121 (47.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 90 (36.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 89 (36.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 129 (50.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 44/144 (30%), Positives = 73/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER+VT+ +D F + A A +K + +I
Sbjct: 44 VKKMREESGARINISEG--NCPERIVTITGPTDAI--------FKAFAMIA-YKFEEDII 92
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 93 NS--MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNS 149
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ V ISG + + + QI
Sbjct: 150 TERA---VTISGTPDAIIQCVKQI 170
Score = 105 (42.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 14 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 66
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + KA IA + ++
Sbjct: 67 VTITGPTDAIFKAFAMIAYKFEED 90
Score = 80 (33.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 246 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 280
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 269 EIRQMSGAQIKI-ANATEGSSERQITIT 295
Score = 45 (20.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 266 DWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTE 325
D S+ ++P S +LRLV P +IR+ +GA ++V
Sbjct: 90 DIINSMSNSPAT--SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----A 142
Query: 326 GDDCLITVSSKEFFEDTLSATIEAVVR 352
GD ++ S++ T+S T +A+++
Sbjct: 143 GD--MLPNSTERAV--TISGTPDAIIQ 165
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 124 (48.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 46/154 (29%), Positives = 79/154 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ + I I E ER++T+ + TNA K + D L + VI
Sbjct: 36 VKKMREESGAGINISEG--NCPERIITL---AGPTNAIF---KAFAMIIDKL----EEVI 83
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + + + VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 84 SSSMT-NSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + D PS+
Sbjct: 142 TERA---ITIAGIPQSIIECVKQICVVMLDPPSK 172
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 55/204 (26%), Positives = 89/204 (43%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+ R+ + I+G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTERA---ITIAGIPQ 153
Query: 200 VVKKALCQIASRLHDNPSRS---QHLLAXXXXXXXXXXXXLVGPTAA-----TPIVGIAP 251
+ + + QI + D PS+ + + G A T + +A
Sbjct: 154 SIIECVKQICVVMLDPPSKGVTIPYRPKPSSSPVIFAGGTIQGQYAIPQPDLTKLHQLAM 213
Query: 252 LMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQ 311
+ G+T +S SL D S++ S L P +IRQ
Sbjct: 214 QQSHFPMTHGNTG--FSGSL------DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 265
Query: 312 ESGAAIKVDSSSTEGD-DCLITVS 334
SGA IK+ ++ EG D +T++
Sbjct: 266 MSGAQIKI-ANPVEGSTDRQVTIT 288
Score = 96 (38.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L + S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEVISSS 86
Score = 84 (34.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 232 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 286
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 287 ITGSA--ASISLAQYLINVR 304
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 121 (47.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 91 (37.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I N + A E V
Sbjct: 236 DPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGE--RHVT 290
Query: 424 ISGD---LDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIP 464
I+G + LA+ + + ++ G+ T +P P+ P
Sbjct: 291 ITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPA-PFSP 333
Score = 90 (36.7 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 121 (47.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 90 (36.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 89 (36.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 127 (49.8 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 47/145 (32%), Positives = 74/145 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R ++ ++I I E GS ER+VT+ +D F + + AL K + +
Sbjct: 35 VKKMREESGARINISE---GSCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDI 82
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 83 NASMTNSTVTSKP--PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN 139
Query: 184 CALRSDELVQISGEASVVKKALCQI 208
R+ V ISG + + + QI
Sbjct: 140 STERA---VTISGTPDAIIQCVKQI 161
Score = 108 (43.1 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + SC R +
Sbjct: 5 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----SCPER---I 57
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
V I+G + KA IA + ++ + S
Sbjct: 58 VTITGPTDAIFKAFSMIALKFEEDINAS 85
Score = 80 (33.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
L +P IGC+IG+ GS I E+R+++ A I+I
Sbjct: 284 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKI 315
Score = 50 (22.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEG 326
D +S S L P +IRQ SGA IK+ +++TEG
Sbjct: 274 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKI-ANATEG 321
Score = 44 (20.5 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFF 339
S +LRLV P +IR+ +GA ++V GD ++ S++
Sbjct: 93 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----AGD--MLPNSTERAV 145
Query: 340 EDTLSATIEAVVR 352
T+S T +A+++
Sbjct: 146 --TISGTPDAIIQ 156
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 128 (50.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 80 ETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQ 139
E V G E + V D++ DG S ++ K ++ + E + ++ DG
Sbjct: 127 EDVNGGEHQKVI----DDDSKEVNDG----SSQENG--KEENKEVDGE-KSQKEVDGTQS 175
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALRSDELVQISGEA 198
T ++ VPS ++G +IGKGG+ ++ ++ +GA+I+IL+D PS ALR V+I G
Sbjct: 176 TTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRP---VEIIGSV 232
Query: 199 SVVKKA 204
+ ++ A
Sbjct: 233 ACIESA 238
Score = 122 (48.0 bits), Expect = 0.00042, P = 0.00042
Identities = 43/197 (21%), Positives = 89/197 (45%)
Query: 30 GDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRI---GETVPGSE 86
G+ + + G + T R P ++ L+ ++ +KI+I E P S
Sbjct: 163 GEKSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSA 222
Query: 87 ERVVTVYSASDETNAFEDGDKFVSPA-QDALFKVHDRVIAEELRGDEDSDG-GHQVTAKL 144
R V + + E +K +S +A ++A RG + G ++
Sbjct: 223 LRPVEIIGS---VACIESAEKLISAVIAEAEAGGSPALVA---RGHPSTHAIGIPEQIEI 276
Query: 145 LVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKA 204
VP+D++G +IG+GG+ ++N+++ +GA+ +++ +H L+ + V+ISG+ + A
Sbjct: 277 KVPNDKVGLIIGRGGETIKNMQTRSGARTQLIP-QHAEGDGLK-ERTVRISGDKMQIDIA 334
Query: 205 LCQIASRLHDNPSRSQH 221
I ++ N S +
Sbjct: 335 TDMIKDVMNQNARPSSY 351
Score = 88 (36.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 34/127 (26%), Positives = 59/127 (46%)
Query: 321 SSSTEGDDCLITVSSKEFFEDTLSATI-EAVVRLQPRCSEKIERDSGLISFTTRL--LVP 377
SS+ + + +V+ E E +SA I EA P + + I ++ VP
Sbjct: 220 SSALRPVEIIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVP 279
Query: 378 TSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD---LDLAKDA 434
++G +IG+GG I M+ + A +++P+ E V+ISGD +D+A D
Sbjct: 280 NDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKE--RTVRISGDKMQIDIATDM 337
Query: 435 LIQVMTR 441
+ VM +
Sbjct: 338 IKDVMNQ 344
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 121 (47.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 85 (35.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 375 LVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD---LDLA 431
LVP IGC+IG+ GS I+E+R+++ A+I+I N + A E V I+G + LA
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGAGE--RHVTITGSPVSIALA 301
Query: 432 KDALIQVMTRLRANLFDREGAVSTFVPVLPYIP 464
+ + + ++ G+ T +P P+ P
Sbjct: 302 QYLITACLETAKSTSGGTPGSAPTDLPA-PFSP 333
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 122 (48.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+ R+ V ISG
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNSTERA---VTISGTPD 153
Query: 200 VVKKALCQIASRLHDNPSR 218
+ + + QI + ++P +
Sbjct: 154 AIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G + R ++GA+I I + +C R +
Sbjct: 6 SEGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG----NCPER---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
V I+G + KA IA + ++ + S
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDITNS 86
Score = 80 (33.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 263 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 297
Score = 50 (22.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 308 QIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ +++TEG + IT++
Sbjct: 286 EIRQMSGAQIKI-ANATEGSSERQITIT 312
Score = 44 (20.5 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFF 339
S +LRLV P +IR+ +GA ++V GD ++ S++
Sbjct: 94 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-----AGD--MLPNSTERAV 146
Query: 340 EDTLSATIEAVVR 352
T+S T +A+++
Sbjct: 147 --TISGTPDAIIQ 157
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 121 (47.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGSVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 90 (36.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 83 (34.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 375 LVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 121 (47.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 44/155 (28%), Positives = 77/155 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGSVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ V +SG + + QI + + ++P +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPK 176
Score = 88 (36.0 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R + I+G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER---ITTITGSTA 70
Query: 200 VVKKALCQIASRLHDN 215
V A+ IA +L ++
Sbjct: 71 AVFHAVSMIAFKLDED 86
Score = 83 (34.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 375 LVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 115 (45.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 17 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 65
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 66 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 122
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 123 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 157
Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 150 QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIA 209
++G +IGK G+ V+ +R E+GA+I I + +C R ++ ++G + + KA I
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISEG----NCPER---IITLAGPTNAIFKAFAMII 57
Query: 210 SRLHDNPSRS 219
+L ++ S S
Sbjct: 58 DKLEEDISSS 67
Score = 84 (34.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 218 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 272
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 273 ITGSA--ASISLAQYLINVR 290
Score = 49 (22.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 218 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 274
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 80 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 114
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 129 (50.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 49/200 (24%), Positives = 88/200 (44%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 36 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87
Query: 82 ---VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDG 136
PG+ ERV + + NA +K Q+ K I + + + D
Sbjct: 88 KDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVA-KTEPVSILQP-QTTVNPDR 145
Query: 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISG 196
QV K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SG
Sbjct: 146 IKQV--KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSG 200
Query: 197 EASVVKKALCQIASRLHDNP 216
E +KA+ I ++ ++P
Sbjct: 201 EPEQNRKAVELIIQKIQEDP 220
Score = 75 (31.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 401 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 440
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 129 (50.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 49/200 (24%), Positives = 88/200 (44%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 36 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87
Query: 82 ---VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDG 136
PG+ ERV + + NA +K Q+ K I + + + D
Sbjct: 88 KDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVA-KTEPVSILQP-QTTVNPDR 145
Query: 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISG 196
QV K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SG
Sbjct: 146 IKQV--KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSG 200
Query: 197 EASVVKKALCQIASRLHDNP 216
E +KA+ I ++ ++P
Sbjct: 201 EPEQNRKAVELIIQKIQEDP 220
Score = 75 (31.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 401 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 440
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 115 (45.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 176
Score = 103 (41.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 292
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 293 ITGSA--ASISLAQYLINVR 310
Score = 49 (22.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 294
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 115 (45.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 176
Score = 103 (41.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 239 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 293
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 294 ITGSA--ASISLAQYLINVR 311
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 116 (45.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 43/154 (27%), Positives = 79/154 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + ++P +
Sbjct: 142 TERA---ITIAGIPQSIIECVKQICVVMLESPPK 172
Score = 103 (41.3 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 266 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 320
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 321 ITGSA--ASISLAQYLINVR 338
Score = 49 (22.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 266 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 322
Score = 40 (19.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 128 (50.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 48/200 (24%), Positives = 88/200 (44%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
Query: 82 ---VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDG 136
PG+ ERV + + NA +K Q+ K I + + + D
Sbjct: 89 KDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVA-KTEPVSILQP-QTTVNPDR 146
Query: 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISG 196
QV K++VP+ G +IGKGG V+ + ++GA +++ + P + +V +SG
Sbjct: 147 IKQV--KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSG 201
Query: 197 EASVVKKALCQIASRLHDNP 216
E +KA+ I ++ ++P
Sbjct: 202 EPEQNRKAVELIIQKIQEDP 221
Score = 75 (31.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 402 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 441
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 116 (45.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 43/154 (27%), Positives = 79/154 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + ++P +
Sbjct: 142 TERA---ITIAGIPQSIIECVKQICVVMLESPPK 172
Score = 103 (41.3 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 279 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 333
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 334 ITGSA--ASISLAQYLINVR 351
Score = 49 (22.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 279 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 335
Score = 40 (19.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 115 (45.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 176
Score = 103 (41.3 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 270 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 324
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 325 ITGSA--ASISLAQYLINVR 342
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 270 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 326
Score = 40 (19.1 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 115 (45.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 176
Score = 103 (41.3 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 336
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 337 ITGSA--ASISLAQYLINVR 354
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 338
Score = 40 (19.1 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 115 (45.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 43/155 (27%), Positives = 75/155 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIA-SRLHDNPSR 218
R+ + I K +C + L +P +
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLETLSQSPPK 176
Score = 103 (41.3 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 336
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 337 ITGSA--ASISLAQYLINVR 354
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 338
Score = 40 (19.1 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 125 (49.1 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 43/202 (21%), Positives = 90/202 (44%)
Query: 25 KRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET--- 81
KR TG++ + F+ + L P + QL+ +T + I++ ++
Sbjct: 47 KRSNTGEEGEYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 98
Query: 82 VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVT 141
PG+ ERV + + N + F++ + + + + + + ++
Sbjct: 99 YPGTTERVCLIQGTVEALNGVHN---FIAEKVREMPQSSQKTEPVSILQPQTTVNPDRIK 155
Query: 142 -AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200
AKL+VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE
Sbjct: 156 QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PEGINLQERVVTVSGEPEQ 212
Query: 201 VKKALCQIASRLHDNPSRSQHL 222
+KA+ I ++ ++P S L
Sbjct: 213 NRKAVEIIVQKIQEDPQSSSCL 234
Score = 76 (31.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 414 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIP 453
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 125 (49.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 50/194 (25%), Positives = 87/194 (44%)
Query: 37 IIG-PEDTVY--RYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET---VPGSEERVV 90
I+G E+ Y + L P + QL+ +T + I++ ++ PG+ ERV
Sbjct: 54 IVGFHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVC 113
Query: 91 TVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPS 148
+ + N D +K Q A K I + + + D Q AKL+VP+
Sbjct: 114 LIQGTVEALNNVHDFIAEKVREMPQSAQ-KTEPVSILQP-QTTVNPDRVKQ--AKLVVPN 169
Query: 149 DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQI 208
G +IGKGG V+ + ++GA +++ + P + +V ISGE +KA+ I
Sbjct: 170 STAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTISGEPEQNRKAVEII 226
Query: 209 ASRLHDNPSRSQHL 222
++ ++P S L
Sbjct: 227 VQKIQEDPQSSSCL 240
Score = 113 (44.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 35/139 (25%), Positives = 65/139 (46%)
Query: 83 PGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTA 142
P S +R + + + T GD+ A +HD + ++ G + +G + +
Sbjct: 15 PDSRKRPLETPTEASSTKRTNTGDRCNQAA------IHDPPFSSDIVGFHE-EGEYFL-- 65
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALRSDELVQISGEASVV 201
K+L+PS G +IGKGGQ + ++ ETGA I++ K + P ++ + I G +
Sbjct: 66 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT---TERVCLIQGTVEAL 122
Query: 202 KKALCQIASRLHDNPSRSQ 220
IA ++ + P +Q
Sbjct: 123 NNVHDFIAEKVREMPQSAQ 141
Score = 75 (31.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 421 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 460
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 115 (45.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 40/154 (25%), Positives = 78/154 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ A T F+ + ++ D I
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL--AGPTTAIFKAFSMIIEKLEE------D--I 83
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + + + VT +++VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 84 SSSM-SNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + ++P +
Sbjct: 142 TERA---ITIAGTPLSIIECVKQICVVMLESPPK 172
Score = 102 (41.0 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTTAIFKAFSMIIEKLEEDISSS 86
Score = 80 (33.2 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V I+G
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSSDRQVTITG 292
Score = 48 (22.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 235 DASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSSDRQVTIT 291
Score = 39 (18.8 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
S +LR+V P +IR+ +GA ++V
Sbjct: 94 SKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 118 (46.6 bits), Expect = 0.00078, P = 0.00078
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQI 194
DG T + +P+D +GC+IG+GG + IR +GA+I I K H + + + I
Sbjct: 457 DGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDET----GERMFTI 512
Query: 195 SGEASVVKKALCQIASRLHDNPSRSQHL 222
G A +KAL + L +R L
Sbjct: 513 MGSAQANEKALYLLYENLEAEKTRRSQL 540
Score = 114 (45.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 39/154 (25%), Positives = 76/154 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
V LR +T K + + VPG +RV+TV A T + A+ L +
Sbjct: 249 VADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGT-----ARAYALVAKGLL----EGAP 299
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ G ++G H + +LL+ +Q+G +IG+ G +++I+ +G ++ + + E LP
Sbjct: 300 QMGMGGIVSNNGTHPI--RLLISHNQMGTIIGRQGLKIKHIQDASGVRM-VAQKEMLPQS 356
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
++ +V++ G ++KA+ +I L D+ R
Sbjct: 357 ---TERIVEVQGTPEGIEKAIWEIGKCLIDDWQR 387
Score = 88 (36.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T + +P +GC+IG+GG+ ITE+RR + A I I
Sbjct: 463 TQNISIPADMVGCIIGRGGTKITEIRRSSGARISI 497
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 132 EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
E+ +T + +V S + G +IGK G+ V ++R ETG + + K +P D +
Sbjct: 219 EEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV--VPGV---HDRV 273
Query: 192 VQISGEASVVKKALCQIASRL 212
+ ++G S +A +A L
Sbjct: 274 LTVTGALSGTARAYALVAKGL 294
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 111 (44.1 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+ R+ + I+G
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTERA---ITIAGIPQ 114
Query: 200 VVKKALCQIASRLHDNPSR 218
+ + + QI + ++P +
Sbjct: 115 SIIECVKQICVVMLESPPK 133
Score = 100 (40.3 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 135 DGGHQVTA-KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQ 193
D Q T+ +L +P+D IGC+IG+ G + IR +GAQI+I P +D V
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEG-STDRQVT 294
Query: 194 ISGEASVVKKALCQIASRL 212
I+G A+ + A I RL
Sbjct: 295 ITGSAASISLAQYLINVRL 313
Score = 84 (34.6 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 294
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 295 ITGSA--ASISLAQYLINVR 312
Score = 56 (24.8 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 65 VKQLRIDTKSKIRI-GETVPGSEERVVTV 92
+K++R T +++++ G+ +P S ER +T+
Sbjct: 81 IKEIRESTGAQVQVAGDMLPNSTERAITI 109
Score = 49 (22.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 296
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 115 (45.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 40/144 (27%), Positives = 72/144 (50%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKRIREESGARINISEG--NCPERIITL---TGPTNAI-----FKAFAM-IIDKLEEDIN 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + + + K +C +
Sbjct: 142 TERAITIAGVPQSVTECVKQICLV 165
Score = 100 (40.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +LL+ ++G +IGK G+ V+ IR E+GA+I I + +C R ++ ++G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPER---IITLTGPTN 66
Query: 200 VVKKALCQIASRLHDNPSRS 219
+ KA I +L ++ + S
Sbjct: 67 AIFKAFAMIIDKLEEDINSS 86
Score = 81 (33.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
T L +P + IGC+IG+ G+ I E+R+++ A I+I
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 308 QIRQESGAAIKVDSSSTEG 326
+IRQ SGA IK+ ++ EG
Sbjct: 304 EIRQMSGAQIKI-ANPVEG 321
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 110 (43.8 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+ R+ + I
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTERAITIAGIPQSII 98
Query: 200 VVKKALCQIA-SRLHDNPSR 218
K +C + L +P +
Sbjct: 99 ECVKQICVVMLETLSQSPPK 118
Score = 100 (40.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 135 DGGHQVTA-KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQ 193
D Q T+ +L +P+D IGC+IG+ G + IR +GAQI+I P +D V
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEG-STDRQVT 279
Query: 194 ISGEASVVKKALCQIASRL 212
I+G A+ + A I RL
Sbjct: 280 ITGSAASISLAQYLINVRL 298
Score = 84 (34.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 279
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 280 ITGSA--ASISLAQYLINVR 297
Score = 56 (24.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 65 VKQLRIDTKSKIRI-GETVPGSEERVVTV 92
+K++R T +++++ G+ +P S ER +T+
Sbjct: 62 IKEIRESTGAQVQVAGDMLPNSTERAITI 90
Score = 49 (22.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 278 DLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
D S++ S L P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 281
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 127 (49.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 45/156 (28%), Positives = 81/156 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDET-NAFEDGDKFVSPAQDALFKVHDR 122
VK++R ++ ++I I E GS ER++T+ A++ AF ++ K+ +
Sbjct: 49 VKRIREESSARINISE---GSCPERIITITGATECVFRAFT----MIT------IKLEED 95
Query: 123 VIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLP 182
+ A G S VT +L++P+ Q G +IGKGG ++ IR +TGAQ+++ D LP
Sbjct: 96 LAALVANGTVTSKP--PVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDL-LP 152
Query: 183 SCALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
+ R V ISG + + + I + + ++P +
Sbjct: 153 NSTERG---VTISGSQDAIIQCVKLICTVILESPPK 185
Score = 102 (41.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 131 DED-SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187
++D DGG VT +LL+ ++G +IGK G+ V+ IR E+ A+I I + SC R
Sbjct: 15 EQDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG----SCPER 70
Query: 188 SDELVQISGEASVVKKALCQIASRLHDN 215
++ I+G V +A I +L ++
Sbjct: 71 ---IITITGATECVFRAFTMITIKLEED 95
Score = 71 (30.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
LL+P IG +IG+ G+ I E+R+++ A I+I
Sbjct: 284 LLIPNDLIGSIIGRQGTKINEIRQVSGAQIKI 315
Score = 55 (24.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 27/114 (23%), Positives = 41/114 (35%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVS----S 335
SS+ S L+ P +IRQ SGA IK+ S D +T++ S
Sbjct: 276 SSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPIS 335
Query: 336 KEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGG 389
+ +++ +E S D + SFT +S L GG
Sbjct: 336 INLAQYLITSCLETAKSTAQSSSMSTPVDLNM-SFTQTAPPASSSAAALAAMGG 388
Score = 44 (20.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 280 SSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
S +LRLV P +IR+++GA ++V
Sbjct: 107 SKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQV 146
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 107 (42.7 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 43/200 (21%), Positives = 88/200 (44%)
Query: 252 LMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQ 311
L P G T+G S P+ + S E ++ L P Q+ +
Sbjct: 375 LFPPTSGMPPPTSGPPSAMTPPYPQFEQSETE-TVHLFIPALSVGAIIGKQGQHIKQLSR 433
Query: 312 ESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL---- 367
+GA+IK+ + E D + + ++ EA + Q R KI+ ++ +
Sbjct: 434 FAGASIKI--APAEAPDAKVRMV-------IITGPPEAQFKAQGRIYGKIKEENFVSPKE 484
Query: 368 -ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+ + VP+ G +IGKGG + E++ L+ A + ++P++ P D +V+I+G
Sbjct: 485 EVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITG 541
Query: 427 DL---DLAKDALIQVMTRLR 443
+A+ + +++T+++
Sbjct: 542 HFYACQVAQRKIQEILTQVK 561
Score = 81 (33.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
+LLVP+ +G +IGK G ++NI +T ++I + + E+ A +S ++ S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA-GAAEKSITILSTPEGTSAAC 257
Query: 203 KALCQI 208
K++ +I
Sbjct: 258 KSILEI 263
Score = 74 (31.1 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 27/120 (22%), Positives = 50/120 (41%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
++ K+L ++ +G +IGK G+ ++ I +T +I I + L + + + G
Sbjct: 276 EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNV 333
Query: 199 SVVKKALCQIASRL---HDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGP 255
KA +I ++ ++N S +L A L PT+ P P GP
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMP----PPTSGP 389
Score = 60 (26.2 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 22/102 (21%), Positives = 41/102 (40%)
Query: 1 MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXX 60
MA Q+N ++ + + G +++ G Q P D R L P
Sbjct: 158 MAAQQNP-SQQPRGRRGFGQRGSSRQGSPGSVSKQ---KPCDLPLRLLVPTQFVGAIIGK 213
Query: 61 XXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDETNA 101
++ + T+SKI + G+ E+ +T+ S + T+A
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 108 (43.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 42/200 (21%), Positives = 88/200 (44%)
Query: 252 LMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQ 311
L P G T+G S P+ + S+ ++ L P Q+ +
Sbjct: 375 LFPPTSGMPPPTSGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSR 434
Query: 312 ESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL---- 367
+GA+IK+ + E D + + ++ EA + Q R KI+ ++ +
Sbjct: 435 FAGASIKI--APAEAPDAKVRMV-------IITGPPEAQFKAQGRIYGKIKEENFVSPKE 485
Query: 368 -ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+ + VP+ G +IGKGG + E++ L+ A + ++P++ P D +V+I+G
Sbjct: 486 EVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITG 542
Query: 427 DL---DLAKDALIQVMTRLR 443
+A+ + +++T+++
Sbjct: 543 HFYACQVAQRKIQEILTQVK 562
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
+LLVP+ +G +IGK G ++NI +T ++I + + E+ A +S ++ S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA-GAAEKSITILSTPEGTSAAC 257
Query: 203 KALCQI 208
K++ +I
Sbjct: 258 KSILEI 263
Score = 74 (31.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 27/120 (22%), Positives = 50/120 (41%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
++ K+L ++ +G +IGK G+ ++ I +T +I I + L + + + G
Sbjct: 276 EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNV 333
Query: 199 SVVKKALCQIASRL---HDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGP 255
KA +I ++ ++N S +L A L PT+ P P GP
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMP----PPTSGP 389
Score = 56 (24.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 22/102 (21%), Positives = 41/102 (40%)
Query: 1 MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXX 60
MA Q+ S ++ + + G +++ G Q P D R L P
Sbjct: 158 MAAQQ-SPSQQPRGRRGFGQRGSSRQGSPGSVSKQ---KPCDLPLRLLVPTQFVGAIIGK 213
Query: 61 XXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDETNA 101
++ + T+SKI + G+ E+ +T+ S + T+A
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 110 (43.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 134 SDGGHQVTAKLL-VPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALRSDEL 191
S G Q T K + +P+ ++G +IGKGG+ ++ ++ ++GA+I++ +D P+CA R+
Sbjct: 127 SYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRT--- 183
Query: 192 VQISGEASVVKKA 204
V ++G + KA
Sbjct: 184 VDLTGTPDQISKA 196
Score = 88 (36.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG---DLDLAK 432
+P +++G +IGKGG I M+ T A I+++P +LP + +QI G ++ AK
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQVIPL-HLPPGDPTPERTLQIDGITEQIEHAK 294
Query: 433 DALIQVMT 440
+ ++++
Sbjct: 295 QLVNEIIS 302
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 107 (42.7 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 43/200 (21%), Positives = 88/200 (44%)
Query: 252 LMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQ 311
L P G T+G S P+ + S E ++ L P Q+ +
Sbjct: 375 LFPPTSGMPPPTSGPPSAMTPPYPQFEQSETE-TVHLFIPALSVGAIIGKQGQHIKQLSR 433
Query: 312 ESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL---- 367
+GA+IK+ + E D + + ++ EA + Q R KI+ ++ +
Sbjct: 434 FAGASIKI--APAEAPDAKVRMV-------IITGPPEAQFKAQGRIYGKIKEENFVSPKE 484
Query: 368 -ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+ + VP+ G +IGKGG + E++ L+ A + ++P++ P D +V+I+G
Sbjct: 485 EVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITG 541
Query: 427 DL---DLAKDALIQVMTRLR 443
+A+ + +++T+++
Sbjct: 542 HFYACQVAQRKIQEILTQVK 561
Score = 81 (33.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
+LLVP+ +G +IGK G ++NI +T ++I + + E+ A +S ++ S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENA-GAAEKSITILSTPEGTSAAC 257
Query: 203 KALCQI 208
K++ +I
Sbjct: 258 KSILEI 263
Score = 74 (31.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 27/120 (22%), Positives = 50/120 (41%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
++ K+L ++ +G +IGK G+ ++ I +T +I I + L + + + G
Sbjct: 276 EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGNV 333
Query: 199 SVVKKALCQIASRL---HDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGP 255
KA +I ++ ++N S +L A L PT+ P P GP
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMP----PPTSGP 389
Score = 55 (24.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 22/102 (21%), Positives = 40/102 (39%)
Query: 1 MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXX 60
MA Q+N ++ + G +++ G Q P D R L P
Sbjct: 158 MAAQQNPL-QQPRGRRGLGQRGSSRQGSPGSVSKQ---KPCDLPLRLLVPTQFVGAIIGK 213
Query: 61 XXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDETNA 101
++ + T+SKI + G+ E+ +T+ S + T+A
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 104 (41.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 112 AQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA 171
A + F + A + G E S G + ++ VP + +G ++GKGG+ + + TGA
Sbjct: 394 ATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGA 453
Query: 172 QIRILKD-EHLPSCALRSDELVQISGEASVVKKALCQIASRL 212
+I+I K E +P R V I+G + + A I R+
Sbjct: 454 RIQISKKGEFVPGTRNRK---VTITGTPAATQAAQYLITQRI 492
Score = 100 (40.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALR 187
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT--- 95
Query: 188 SDELVQISGEASVVKKALCQIASRLHDNP 216
++ + I G + IA ++ + P
Sbjct: 96 TERVCLIQGTVEALNAVHGFIAEKIREMP 124
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 232 KAVELIIQKIQEDP 245
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 426 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 465
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 232 KAVELIIQKIQ 242
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
Query: 82 ---VPGSEERVVTVYSASDETNA 101
PG+ ERV + + NA
Sbjct: 89 KDFYPGTTERVCLIQGTVEALNA 111
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 104 (41.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 112 AQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA 171
A + F + A + G E S G + ++ VP + +G ++GKGG+ + + TGA
Sbjct: 394 ATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGA 453
Query: 172 QIRILKD-EHLPSCALRSDELVQISGEASVVKKALCQIASRL 212
+I+I K E +P R V I+G + + A I R+
Sbjct: 454 RIQISKKGEFVPGTRNRK---VTITGTPAATQAAQYLITQRI 492
Score = 100 (40.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALR 187
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT--- 95
Query: 188 SDELVQISGEASVVKKALCQIASRLHDNP 216
++ + I G + IA ++ + P
Sbjct: 96 TERVCLIQGTVEALNAVHGFIAEKIREMP 124
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 232 KAVELIIQKIQEDP 245
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 426 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 465
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 232 KAVELIIQKIQ 242
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
Query: 82 ---VPGSEERVVTVYSASDETNA 101
PG+ ERV + + NA
Sbjct: 89 KDFYPGTTERVCLIQGTVEALNA 111
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 104 (41.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 112 AQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA 171
A + F + A + G E S G + ++ VP + +G ++GKGG+ + + TGA
Sbjct: 394 ATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGA 453
Query: 172 QIRILKD-EHLPSCALRSDELVQISGEASVVKKALCQIASRL 212
+I+I K E +P R V I+G + + A I R+
Sbjct: 454 RIQISKKGEFVPGTRNRK---VTITGTPAATQAAQYLITQRI 492
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 232 KAVELIIQKIQEDP 245
Score = 99 (39.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALR 187
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT--- 95
Query: 188 SDELVQISGEASVVKKALCQIASRLHDNP 216
++ + I G + IA ++ + P
Sbjct: 96 TERVCLIQGTIEALNAVHGFIAEKIREMP 124
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 426 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 465
Score = 70 (29.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 232 KAVELIIQKIQ 242
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
Query: 82 ---VPGSEERVVTVYSASDETNA 101
PG+ ERV + + NA
Sbjct: 89 KDFYPGTTERVCLIQGTIEALNA 111
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 104 (41.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 112 AQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA 171
A + F + A + G E S G + ++ VP + +G ++GKGG+ + + TGA
Sbjct: 394 ATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGA 453
Query: 172 QIRILKD-EHLPSCALRSDELVQISGEASVVKKALCQIASRL 212
+I+I K E +P R V I+G + + A I R+
Sbjct: 454 RIQISKKGEFVPGTRNRK---VTITGTPAATQAAQYLITQRI 492
Score = 99 (39.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 232 KAVELIIQKIQEDP 245
Score = 99 (39.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALR 187
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT--- 95
Query: 188 SDELVQISGEASVVKKALCQIASRLHDNP 216
++ + I G + IA ++ + P
Sbjct: 96 TERVCLIQGTIEALNAVHGFIAEKIREMP 124
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 426 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 465
Score = 70 (29.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 231
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 232 KAVELIIQKIQ 242
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
Query: 82 ---VPGSEERVVTVYSASDETNA 101
PG+ ERV + + NA
Sbjct: 89 KDFYPGTTERVCLIQGTIEALNA 111
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 69/280 (24%), Positives = 115/280 (41%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASR---------LHDNPSRSQHLLAXXXXXXXXXXX 235
R+ + I K +C + PS S + A
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQY 201
Query: 236 XLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXX 295
+ P T + +A + G+T +S L D S++ S L P
Sbjct: 202 AIPQPDL-TKLHQLAMQQSHFPMTHGNTG--FSAGL------DASAQTTSHELTIPNDLI 252
Query: 296 XXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
+IRQ SGA IK+ ++ EG D +T++
Sbjct: 253 GCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 291
Score = 103 (41.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 235 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 289
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 290 ITGSA--ASISLAQYLINVR 307
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 70/286 (24%), Positives = 116/286 (40%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASR---------LHDNPSRSQHLLAXXXXXXXXXXX 235
R+ + I K +C + PS S + A
Sbjct: 142 TERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQY 201
Query: 236 XLVGPTAATPIVGIA------PLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLV 289
+ P T + +A P+ G+ G + Y A D S++ S L
Sbjct: 202 AIPQPDL-TKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD-ASAQTTSHELT 259
Query: 290 CPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGD-DCLITVS 334
P +IRQ SGA IK+ ++ EG D +T++
Sbjct: 260 IPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVEGSTDRQVTIT 304
Score = 103 (41.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 84 (34.6 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQ 423
D+ + + L +P IGC+IG+ G+ I E+R+++ A I+I N P + D V
Sbjct: 248 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---N-P-VEGSTDRQVT 302
Query: 424 ISGDLDLAKDALIQVMTRLR 443
I+G A +L Q + +R
Sbjct: 303 ITGSA--ASISLAQYLINVR 320
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 107 (42.7 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 38/154 (24%), Positives = 76/154 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
V LR +T K + + V G +RV+T+ T E K + AL +
Sbjct: 68 VADLRDETGVKAGVSKVVQGVHDRVLTI------TGGCEGISKAYAVVARALL---EGAP 118
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ + G ++G H + KLL+ +Q+G +IG+ G +++I+ +G ++ + + E LP
Sbjct: 119 SMGMGGVVSNNGTHPI--KLLISHNQMGTIIGRQGLKIKHIQDVSGVRM-VAQKEMLPQS 175
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
++ +V++ G +++A+ +I L D+ R
Sbjct: 176 ---TERVVEVQGTPEGIQRAVWEICKCLIDDWQR 206
Score = 89 (36.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
Q+T + +V S + G +IGKGG+ V ++R ETG + + K + D ++ I+G
Sbjct: 45 QLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQ----GVH-DRVLTITGGC 99
Query: 199 SVVKKALCQIASRLHDN-PS 217
+ KA +A L + PS
Sbjct: 100 EGISKAYAVVARALLEGAPS 119
Score = 81 (33.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T + +P +GC+IG+ GS I+E+R+ + A I I + + M I G
Sbjct: 289 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPH----DETGERMFTIMGSAKA 344
Query: 431 AKDALIQVMTRLRANLFDREGAVS 454
+ AL + L A R S
Sbjct: 345 NETALFLLYENLEAEKMRRSQMTS 368
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 137 (53.3 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 50/180 (27%), Positives = 85/180 (47%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I + S ER+VT+ AS+ F+ F A+ K + ++
Sbjct: 39 VKKMREESGARINISDG--SSPERIVTITGASEVI--FK---AFAMIAE----KFEEDIL 87
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
A + S VT +L+ P+ Q G +IGKGG ++ IR TGAQ+++ D LP
Sbjct: 88 ASMINSTVTSRP--PVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDL-LPDS 144
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXLVGPTAAT 244
R+ V ISG + + + I + + ++P + + L P AAT
Sbjct: 145 TERA---VTISGTPHAITQCVKHICTVMLESPPKGATIPYRPKPSAGGGHTVLTQPHAAT 201
Score = 113 (44.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I D P + +
Sbjct: 9 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SDGSSP------ERI 61
Query: 192 VQISGEASVVKKALCQIASRLHDN 215
V I+G + V+ KA IA + ++
Sbjct: 62 VTITGASEVIFKAFAMIAEKFEED 85
Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 102 TLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 146 (56.5 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 74/325 (22%), Positives = 134/325 (41%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 256 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 316 LS--IYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 373
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + +P G AP PY + T + SLY P ++ +
Sbjct: 374 FSTGLSVLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVN 431
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 482
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 483 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 542
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 543 V-IVPRDQTP---DENEEVIVRIIG 563
Score = 90 (36.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 487
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 488 AQGRIFGKLKEENFFN 503
Score = 78 (32.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + + S E +F+ D+ VS P+
Sbjct: 111 VEQVNTDTETAV-VNVTYATREEAKIAMEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 169
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ + Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 170 QRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 229
Query: 176 LKDEH 180
+ E+
Sbjct: 230 HRKEN 234
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 146 (56.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 74/325 (22%), Positives = 134/325 (41%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 262 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 321
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 322 LS--IYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 379
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + +P G AP PY + T + SLY P ++ +
Sbjct: 380 FSTGLSVLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVN 437
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 488
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 489 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 548
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 549 V-IVPRDQTP---DENEEVIVRIIG 569
Score = 90 (36.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 493
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 494 AQGRIFGKLKEENFFN 509
Score = 74 (31.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++LVP+ +G +IGK G ++NI +T +++ I + E+
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 240
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 74/325 (22%), Positives = 133/325 (40%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 155 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 214
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 215 LS--IYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 272
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ +
Sbjct: 273 FSTGLSVLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVN 330
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 331 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 381
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 382 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 441
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 442 V-IVPRDQTP---DENEEVIVRIIG 462
Score = 90 (36.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 331 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 386
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 387 AQGRIFGKLKEENFFN 402
Score = 74 (31.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++LVP+ +G +IGK G ++NI +T +++ I + E+
Sbjct: 96 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 133
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 105 (42.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 43/200 (21%), Positives = 88/200 (44%)
Query: 252 LMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQ 311
L P G T+G S P+ + S E ++ L P Q+ +
Sbjct: 375 LFPPTSGMPPPTSGPPSTLTPPYPQFEQSETE-TVHLFIPALSVGAIIGKQGQHIKQLSR 433
Query: 312 ESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL---- 367
+GA+IK+ + E D + + ++ EA + Q R KI+ ++ +
Sbjct: 434 FAGASIKI--APAEAPDAKVRMV-------IITGPPEAQFKAQGRIYGKIKEENFVSPKE 484
Query: 368 -ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+ + VP+ G +IGKGG + E++ L+ A + ++P++ P D +V+I+G
Sbjct: 485 EVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEV-VVPRDQTPD--ENDQVVVKITG 541
Query: 427 DL---DLAKDALIQVMTRLR 443
+A+ + +++T+++
Sbjct: 542 HFYACQVAQRKIQEILTQVK 561
Score = 81 (33.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
+LLVP+ +G +IGK G ++NI +T ++I + + E+ A +S ++ S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENT-GAAEKSITILSTPEGTSAAC 257
Query: 203 KALCQI 208
K++ +I
Sbjct: 258 KSILEI 263
Score = 74 (31.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 27/120 (22%), Positives = 50/120 (41%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
++ K+L ++ +G +IGK G+ ++ I +T +I I + L + + + G
Sbjct: 276 EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELT--LYNPERTITVKGSV 333
Query: 199 SVVKKALCQIASRL---HDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGP 255
KA +I ++ ++N S +L A L PT+ P P GP
Sbjct: 334 ETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMP----PPTSGP 389
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 40 PEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDE 98
P D R L P ++ + T+SKI + G+ E+ +T+ S +
Sbjct: 193 PCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEG 252
Query: 99 TNA 101
T+A
Sbjct: 253 TSA 255
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 74/325 (22%), Positives = 133/325 (40%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 177 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 236
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 237 LS--IYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 294
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ +
Sbjct: 295 FSTGLSVLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVN 352
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 353 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 403
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 404 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 463
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 464 V-IVPRDQTP---DENEEVIVRIIG 484
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 353 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 408
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 409 AQGRIFGKLKEENFFN 424
Score = 80 (33.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + S E +F+ D+ VS P+
Sbjct: 32 VEQVNTDTETAV-VNVTYATREEAKTAIEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 90
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ S Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 91 QRGDHSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 150
Query: 176 LKDEH 180
+ E+
Sbjct: 151 HRKEN 155
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 74/325 (22%), Positives = 133/325 (40%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 181 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 240
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 241 LS--IYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 298
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ +
Sbjct: 299 FSTGLSVLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVN 356
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 357 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 407
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 408 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 467
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 468 V-IVPRDQTP---DENEEVIVRIIG 488
Score = 90 (36.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 357 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 412
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 413 AQGRIFGKLKEENFFN 428
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + S E +F+ D+ VS P+
Sbjct: 36 VEQVNTDTETAV-VNVTYATREEAKTAIEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 94
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ S Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 95 QRGDHSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 154
Query: 176 LKDEH 180
+ E+
Sbjct: 155 HRKEN 159
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 74/325 (22%), Positives = 133/325 (40%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 188 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 247
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 248 LS--IYNPERTITVKGTVEACANAEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 305
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ +
Sbjct: 306 FSTGLSVLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVN 363
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 364 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 414
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 415 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 474
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 475 V-IVPRDQTP---DENEEVIVRIIG 495
Score = 90 (36.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 364 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 419
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 420 AQGRIFGKLKEENFFN 435
Score = 82 (33.9 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + + S E +F+ D+ VS P
Sbjct: 43 VEQVNTDTETAV-VNVTYATREEAKIAIEKLSGHQFENYSFKISYIPDEEVSSPTPPQRA 101
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ S Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 102 QRGDHSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 161
Query: 176 LKDEH 180
+ E+
Sbjct: 162 HRKEN 166
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 75/325 (23%), Positives = 134/325 (41%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D +V K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 249 RMILEIMQKEADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQD 308
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 309 LS--IYNPERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 366
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ ++
Sbjct: 367 FSTGLSVLPPPAGPRGAPPSPPYHPFA--THSGYFSSLYPHHHFGPFPHHHSYPEQETVS 424
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 475
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 476 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 535
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 536 V-IVPRDQTP---DENEEVIVRIIG 556
Score = 94 (38.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 431 AKDALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 478 QFKAQGRIFGKLKEENFFN 496
Score = 93 (37.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVS--PAQDALFKVHDR 122
V+Q+ DT++ + + T EE V + S + FED +S P ++
Sbjct: 111 VEQVNTDTETAV-VNVTYMTREEAKVAIEKLSG--HQFEDYSFKISYIPDEELSSPSPPH 167
Query: 123 VIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
E+ G S Q+ ++LVP+ +G +IGK G ++NI +T +++ I + E+
Sbjct: 168 RAREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 227
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 74/325 (22%), Positives = 133/325 (40%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 256 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G A +I +L + N + + A +
Sbjct: 316 LS--IYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 373
Query: 238 --VGPTAATPIVGI--APLMGPYGGYKGDTAGDWSRSLYSA------PRDDLSSKEFSLR 287
G + P G AP PY + T + SLY P ++ +
Sbjct: 374 FSTGLSVLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVN 431
Query: 288 LVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATI 347
L P Q+ + +GA+IK+ + EG D VS + ++
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPP 482
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP+S G +IGKGG + E++ LT A
Sbjct: 483 EAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAE 542
Query: 403 IRILPKENLPKIASEDDEM-VQISG 426
+ I+P++ P E++E+ V+I G
Sbjct: 543 V-IVPRDQTP---DENEEVIVRIIG 563
Score = 90 (36.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 487
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 488 AQGRIFGKLKEENFFN 503
Score = 80 (33.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + S E +F+ D+ VS P+
Sbjct: 111 VEQVNTDTETAV-VNVTYATREEAKTAIEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 169
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ S Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 170 QRGDHSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 229
Query: 176 LKDEH 180
+ E+
Sbjct: 230 HRKEN 234
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 142 (55.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 71/323 (21%), Positives = 135/323 (41%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D +V K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 249 RMILEIMQKEADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQD 308
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD---NP----SRSQHL---LAXXXXXX 230
L + + + G A +I +L + N ++ +L L
Sbjct: 309 LS--IYNPERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGI 366
Query: 231 XXXXXXLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSA-PRDDLSSKEFSLRLV 289
++ P A V +P P+ + G + + + P ++ ++ L
Sbjct: 367 FSTGLSVLPPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLF 426
Query: 290 CPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEA 349
P Q+ + +GA+IK+ + EG D VS + ++ EA
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVI---ITGPPEA 477
Query: 350 VVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIR 404
+ Q R K++ ++ + + VP+S G +IGKGG + E++ LT A +
Sbjct: 478 QFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV- 536
Query: 405 ILPKENLPKIASEDDEM-VQISG 426
I+P++ P E++E+ V+I G
Sbjct: 537 IVPRDQTP---DENEEVIVRIIG 556
Score = 94 (38.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 431 AKDALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 478 QFKAQGRIFGKLKEENFFN 496
Score = 91 (37.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVS--PAQDALFKVHDR 122
V+Q+ DT++ + + T EE + + S + FED +S P ++
Sbjct: 111 VEQVNTDTETAV-VNVTYMTREEAKLAIEKLSG--HQFEDYSFKISYIPDEEVSSPSPPH 167
Query: 123 VIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
E+ G S Q+ ++LVP+ +G +IGK G ++NI +T +++ I + E+
Sbjct: 168 RAREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 227
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 111 (44.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 38/131 (29%), Positives = 65/131 (49%)
Query: 87 ERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLV 146
+++ T Y A+ + + ++ + + D + +I E L+ E+ D V +LL+
Sbjct: 46 QKMRTQYKATVSVDDSQGPERTIQISADIESTLE--IITEMLKYFEERDEDFDV--RLLI 101
Query: 147 PSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS-DELVQISGEASVVKKAL 205
GCVIGKGGQ ++ IR G R LK + A +S D +VQ G+ S V +A+
Sbjct: 102 HQSLAGCVIGKGGQKIKEIRDRIGC--RFLKV--FSNVAPQSTDRVVQTVGKQSQVIEAV 157
Query: 206 CQIASRLHDNP 216
++ + D P
Sbjct: 158 REVITLTRDTP 168
Score = 87 (35.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 122 RVIAEELRGDEDSDGGH--QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
R + +E G +D + T ++L+PS G VIGKGGQ +Q +R++ A + +
Sbjct: 3 REMNDEGEGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV 58
Score = 75 (31.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
+T++ +P G +IGKGG I +R + A I I E LP + +D ++ ISG
Sbjct: 422 STQVTIPKELAGAIIGKGGGRIRRIRNESSAYITI--DEPLP---NSNDRIITISG 472
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVS 334
+IR ES A I +D +D +IT+S
Sbjct: 445 RIRNESSAYITIDEPLPNSNDRIITIS 471
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 96 (38.9 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL-PKENLPKIASEDDEMVQISGDLD 429
T ++ +P +G +IGKGG+ I E+R L+ + I+I P+EN ++ +V I+G +
Sbjct: 392 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQEN------SNERLVTITGTQE 445
Query: 430 LAKDALIQVMTRLRA 444
+ AL + +RL +
Sbjct: 446 CNQMALYMLYSRLES 460
Score = 89 (36.4 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 37/109 (33%), Positives = 50/109 (45%)
Query: 109 VSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAK-----LLVPSDQIGCVIGKGGQIVQ 163
VS QDA+ K +I +E D +K LL+P IG +IGKGG ++
Sbjct: 157 VSGPQDAVAKAFGLII--RTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIR 214
Query: 164 NIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212
I+ +GA++ D LP RS LV I G A V A +A L
Sbjct: 215 EIQDASGARLNA-SDACLPLSTERS--LV-ILGVADAVHIATYYVAVTL 259
Score = 78 (32.5 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+E+ R ++S+ H + ++ S + VIGKGG+ V IR +GA+ + ++
Sbjct: 96 SEQQRPQDESNWIH---IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV--SDYSRGA 150
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNP 216
R ++ +SG V KA I L++ P
Sbjct: 151 VER---ILTVSGPQDAVAKAFGLIIRTLNNEP 179
Score = 39 (18.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 239 GPTAATPIVGIAP 251
GPT A P+ G P
Sbjct: 375 GPTPAAPVGGAMP 387
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 98 (39.6 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE +
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 234
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 235 KAVELIIQKIQEDP 248
Score = 96 (38.9 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILK 177
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK 87
Score = 75 (31.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 429 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 468
Score = 70 (29.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 234
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 235 KAVELIIQKIQ 245
Score = 51 (23.0 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 20/86 (23%), Positives = 33/86 (38%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ +
Sbjct: 37 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKL 88
Query: 82 ------VPGSEERVVTVYSASDETNA 101
PG+ ERV + + NA
Sbjct: 89 SKSKDFYPGTTERVCLIQGTVEALNA 114
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 103 (41.3 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 36/125 (28%), Positives = 65/125 (52%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
Q+ + +GA+IK+ + EG D VS + ++ EA + Q R K++ ++
Sbjct: 330 QLARFAGASIKI--APAEGPD----VSERMVI---ITGPPEAQFKAQGRIFGKLKEENFF 380
Query: 368 -----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM- 421
+ + VP+S G +IGKGG + E++ LT A + I+P++ P E++E+
Sbjct: 381 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 436
Query: 422 VQISG 426
V+I G
Sbjct: 437 VRIIG 441
Score = 90 (36.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 310 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 365
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 366 AQGRIFGKLKEENFFN 381
Score = 80 (33.2 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + S E +F+ D+ VS P+
Sbjct: 32 VEQVNTDTETAV-VNVTYATREEAKTAIEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 90
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ S Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 91 QRGDHSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 150
Query: 176 LKDEH 180
+ E+
Sbjct: 151 HRKEN 155
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 177 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 236
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD 214
L + + + G A +I +L +
Sbjct: 237 LS--IYNPERTITVKGTVEACANAEIEIMKKLRE 268
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 139 (54.0 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 103/450 (22%), Positives = 182/450 (40%)
Query: 1 MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXX 60
+ G RN G R+ + D + G + G + Q P D R L P
Sbjct: 163 LPGTRNRRGGRTSREQD-SQPGTSGSSL-GSRQKQ----P-DFPLRMLVPTQFVGAIIGK 215
Query: 61 XXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119
+K + T+SK+ I G+ E+ +T++S + G S A + +
Sbjct: 216 EGLTIKNITKQTQSKVDIHRKENAGAAEKPITIHSTPE-------G---CSTACHMIMDI 265
Query: 120 HDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179
+ A + + ED + K+L + +G +IGK G+ ++ I +T +I I +
Sbjct: 266 MQKE-AVDTKVTED------IPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQ 318
Query: 180 HLPSCALRSDELVQISGEASVVKKALCQIASRL---HDNP----SRSQHLLAXXXXXXXX 232
L + + + G +A +I +L ++N ++ +L+
Sbjct: 319 DLT--IYNPERTIIVKGSIEACCRAEVEIMKKLREAYENDVAAINQQSNLIPGLSLSALG 376
Query: 233 XXXX--LVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSR--SLYSAP-RDDLSSKEFS-- 285
V P AA P GI P+ P GY G S+ LY P +S + +
Sbjct: 377 IFSTGLSVLPPAAGPR-GIPPV--PPTGYN-PFLGHSSQLGGLYGVPPASGISHQHTAPE 432
Query: 286 ---LRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDT 342
+ L P Q+ + +GA+IK+ + E D V+ +
Sbjct: 433 QEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI--APAESPD----VTQRMVI--- 483
Query: 343 LSATIEAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRR 397
++ EA + Q R K++ ++ + T + VP+S G +IGKGG + E++
Sbjct: 484 ITGPPEAQFKAQGRIFGKLKEENFFTAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQN 543
Query: 398 LTKANIRILPKENLPKIASEDDEM-VQISG 426
LT A + I+P++ P E+DE+ V+ISG
Sbjct: 544 LTSAEV-IVPRDQTP---DENDEVFVKISG 569
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 103 (41.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 36/125 (28%), Positives = 65/125 (52%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
Q+ + +GA+IK+ + EG D VS + ++ EA + Q R K++ ++
Sbjct: 409 QLARFAGASIKI--APAEGPD----VSERMVI---ITGPPEAQFKAQGRIFGKLKEENFF 459
Query: 368 -----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM- 421
+ + VP+S G +IGKGG + E++ LT A + I+P++ P E++E+
Sbjct: 460 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 515
Query: 422 VQISG 426
V+I G
Sbjct: 516 VRIIG 520
Score = 90 (36.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKD 433
L +PT +G +IGK G+ I ++ R A+I+I P E P ++ + MV I+G +
Sbjct: 389 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 444
Query: 434 ALIQVMTRLRA-NLFD 448
A ++ +L+ N F+
Sbjct: 445 AQGRIFGKLKEENFFN 460
Score = 81 (33.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 31/125 (24%), Positives = 59/125 (47%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASD---ETNAFEDG---DKFVS-PAQDALF 117
V+Q+ DT++ + + T EE + V S E +F+ D+ VS P+
Sbjct: 111 VEQVNTDTETAV-VNVTYATREEAKIAVEKLSGHQFENYSFKISYIPDEEVSSPSPPQRA 169
Query: 118 KVHDRVIAEELRGDEDSDGGHQVT--AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRI 175
+ D E+ + Q+ ++LVP+ +G +IGK G ++NI +T +++ I
Sbjct: 170 QRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI 229
Query: 176 LKDEH 180
+ E+
Sbjct: 230 HRKEN 234
Score = 76 (31.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 122 RVIAEELRGDEDSDG-GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E ++ + D ++ K+L + +G +IGK G+ ++ I ETG +I I +
Sbjct: 256 RMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD 214
L + + + G A +I +L +
Sbjct: 316 LS--IYNPERTITVKGTVEACASAEIEIMKKLRE 347
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 71/349 (20%), Positives = 150/349 (42%)
Query: 122 RVIAEELRGD-EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++I E ++ + +D+ ++ K+L ++ +G +IGK G+ ++ I +T +I I +
Sbjct: 268 KIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 327
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXLVG- 239
L + + + G KA +I ++ ++ + +G
Sbjct: 328 LT--LYNPERTITVKGSIEPCAKAEEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGL 385
Query: 240 -PTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXX 298
P++++ G+ P P G T S + Y P E ++ L P
Sbjct: 386 FPSSSS---GMPP---PSVGVPSPT----SSTSYP-PFGQQPESE-TVHLFIPALAVGAI 433
Query: 299 XXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCS 358
Q+ + +GA+IK+ + EG D + + ++ EA + Q R
Sbjct: 434 IGKQGQHIKQLSRFAGASIKI--APAEGPDAKLRMV-------IITGPPEAQFKAQGRIY 484
Query: 359 EKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPK 413
K++ ++ + T + VP+ G +IGKGG + E++ LT A + ++P++ P
Sbjct: 485 GKLKEENFFGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP- 542
Query: 414 IASEDDEMV-QISGDL---DLAKDALIQVMTRLRANLFDREGAVSTFVP 458
E+DE+V +I+G LA+ + +++ ++R ++ V + P
Sbjct: 543 --DENDEVVVKITGHFYASQLAQRKIQEILAQVRRQQQQQQKTVQSGQP 589
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 71/280 (25%), Positives = 117/280 (41%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQ----H--LLAXXXXXXXXXXXXL 237
R+ V +SG + + QI + + ++P + H L +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSV 201
Query: 238 VGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSA---PRDDLSSKEFSLRLVCPXXX 294
G A + L G+ A S S+ A P SS+EF LV P
Sbjct: 202 QGQYGAVTPAEVTKLQ-QLSGHAVPFA---SPSMVPAGLDPGTQTSSQEF---LV-PNDL 253
Query: 295 XXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVS 334
+IRQ SGA IK+ + + + +T++
Sbjct: 254 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 293
Score = 90 (36.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
+E+ + +T ++L+ ++G +IGK G+ V+ IR ++ A+I I + SC R
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----SCPER--- 61
Query: 191 LVQISGEASVVKKALCQIASRLHDN 215
+ I+G + V A+ IA +L ++
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 89 (36.4 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 278
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 69/316 (21%), Positives = 138/316 (43%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
++ K+L ++ +G +IGK G+ ++ I +T +I I + L + + + G
Sbjct: 275 EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLT--LYNPERTITVKGTL 332
Query: 199 SVVKKALCQIASRL---HDNPSRSQHLLAXXXXXXXXXXXXLVGPTAATPIVGIAPLMGP 255
KA +I ++ ++N + HL + L P AA+ GI+P +
Sbjct: 333 DACAKAEEEIMKKVRESYENDVAAMHLQSNLIPGLNLNALGLF-PGAASG--GISPSVVS 389
Query: 256 YGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGA 315
G G AG Y + + S+ ++ L P Q+ + +GA
Sbjct: 390 -GPPPGAQAG------YQSFGAQMESE--TVHLFIPALAVGAIIGKQGQHIKQLSRFAGA 440
Query: 316 AIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL-----ISF 370
+IK+ + +G D +K+ +S EA + Q R K++ ++ +
Sbjct: 441 SIKI--APADGID------AKQRMV-IISGPPEAQFKAQGRIFGKLKEENFFGPKEEVKL 491
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL-- 428
+ VP+ G +IGKGG + E++ LT A + ++P++ P D +V+I+G
Sbjct: 492 EAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDQVVVKITGHFYA 548
Query: 429 -DLAKDALIQVMTRLR 443
LA+ + ++++++R
Sbjct: 549 SQLAQRKIQEIISQVR 564
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 102 (41.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 34/144 (23%), Positives = 71/144 (49%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
Q+ + +GA+IK+ + EG D + + ++ EA + Q R K++ ++
Sbjct: 434 QLSRFAGASIKI--APAEGPDAKLRMV-------IITGPPEAQFKAQGRIYGKLKEENFF 484
Query: 368 -----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMV 422
+ + VP+ G +IGKGG + E++ LT A + ++P++ P D +V
Sbjct: 485 GPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDQVVV 541
Query: 423 QISGDL---DLAKDALIQVMTRLR 443
+I+G LA+ + +++ ++R
Sbjct: 542 KITGHFYACQLAQRKIQEILAQVR 565
Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
V ++LVP+ +G +IGK G ++NI +T ++I I + E+
Sbjct: 197 VPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKEN 237
Score = 68 (29.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 122 RVIAEELRGD-EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++I E ++ + +D+ ++ K+L ++ +G +IGK G+ ++ I +T +I I +
Sbjct: 259 KIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 318
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215
L + + + G KA +I ++ ++
Sbjct: 319 LT--LYNPERTITVKGSIETCAKAEEEIMKKIRES 351
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALRSDEL 191
+ DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P ++ +
Sbjct: 4 EEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT---TERV 58
Query: 192 VQISGEASVVKKALCQIASRLHDNP 216
I G + IA ++ + P
Sbjct: 59 CLIQGTVEALNAVHGFIAEKIREMP 83
Score = 70 (29.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 16/71 (22%), Positives = 40/71 (56%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432
+++VP S G +IGKGG+ + + + A +++ K P + + +V +SG+ + +
Sbjct: 134 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 190
Query: 433 DALIQVMTRLR 443
A+ ++ +++
Sbjct: 191 KAVELIIQKIQ 201
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 99 (39.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 109
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 110 KAVELIIQKIQEDP 123
Score = 75 (31.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 304 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 343
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 99 (39.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 38/141 (26%), Positives = 68/141 (48%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + V + G +IGKGG + E++ LT A
Sbjct: 463 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAE 522
Query: 403 IRILPKENLPKIASEDDEMVQISGDL---DLAKDALIQVMTRLRANLFDREGAVSTFVPV 459
+ ++P+E P D +V+I G LA+ + ++T+++ + G + T P
Sbjct: 523 V-VVPREQTPD--EHDQVIVKIIGHFYASQLAQRKIRDILTQVKQQ--QKGGGMGT--PQ 575
Query: 460 LPYIP-VSENGS-DGLNYESR 478
P+ ++E GS GL E R
Sbjct: 576 GPHPQGMTELGSPQGLAQEPR 596
Score = 80 (33.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 199 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 239
Score = 79 (32.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
Q T + +P+ +G +IGK GQ ++ + GA I+I E P +R +V ++G
Sbjct: 407 QETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAE-APDSKMR---MVIVTGPP 462
Query: 199 SVVKKALCQIASRLHD 214
KA +I +L +
Sbjct: 463 EAQFKAQGRIYGKLKE 478
Score = 65 (27.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 30/151 (19%), Positives = 64/151 (42%)
Query: 122 RVIAEELRGD-EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E + + +D+ +V K+L ++ +G +IGK G+ ++ + +T +I I +
Sbjct: 261 RMILEIMNQEAKDTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQD 320
Query: 181 LPSCALRSDELVQISG--EAS-VVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXL 237
L + + + G EA + ++ + + +DN + + L
Sbjct: 321 LT--LYNPERTITVKGSIEACCLAEQEIMKKVREAYDNDIAAMNQQTHLIPGLNLGAIGL 378
Query: 238 VGPTAATPIVGIA-----PLMGPYGGYKGDT 263
P++A P + P GP G + +T
Sbjct: 379 FPPSSAMPPPALGNSVPGPPYGPMGASEQET 409
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 99 (39.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 57 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 113
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 114 KAVELIIQKIQEDP 127
Score = 75 (31.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 308 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 347
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 49/200 (24%), Positives = 88/200 (44%)
Query: 22 GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET 81
G KR TG+D F+ + L P + QL+ +T + I++ ++
Sbjct: 20 GSTKRTNTGEDGQYFL--------KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 71
Query: 82 ---VPGSEERVVTVYSASDETNAFED--GDKFVSPAQDALFKVHDRVIAEELRGDEDSDG 136
PG+ ERV + + NA +K Q+ K I + + + D
Sbjct: 72 KDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVA-KTEPVSILQP-QTTVNPDR 129
Query: 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISG 196
QV K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SG
Sbjct: 130 IKQV--KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSG 184
Query: 197 EASVVKKALCQIASRLHDNP 216
E +KA+ I ++ ++P
Sbjct: 185 EPEQNRKAVELIIQKIQEDP 204
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 121 (47.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 40/180 (22%), Positives = 84/180 (46%)
Query: 42 DTVY--RYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGET---VPGSEERVVTVYSAS 96
+T Y + L P + L+ DT +++++ ++ PG+ ERV + +
Sbjct: 96 ETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI---T 152
Query: 97 DETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIG 156
T A +F+ + ++++ + + ++ D QV K+LVP+ G +IG
Sbjct: 153 GSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERD--KQV--KILVPNSTAGMIIG 208
Query: 157 KGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNP 216
KGG ++ I+ E+G+ ++I + P+ + + I G+ K A I S++ ++P
Sbjct: 209 KGGAFIKQIKEESGSYVQISQK---PTDVSLQERCITIIGDKENNKNACKMILSKIVEDP 265
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPK 408
VP IG ++G G + E++ ++ AN++I K
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQISKK 555
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 102 (41.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 49/215 (22%), Positives = 95/215 (44%)
Query: 14 SQTDYADHGPN---KRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRI 70
S YA P KR D + + T R+L + + +
Sbjct: 3 STESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQA 62
Query: 71 DTKSKIRIG---ETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEE 127
+ ++I++ E PG+ +R++ + + E V+ + L K+H + AE+
Sbjct: 63 KSGARIQLSRNQEFFPGTTDRIIMISGSIKEV---------VNGLELILDKLHSELHAED 113
Query: 128 LRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187
G+E + ++ +L+VP+ G +IGKGG +++ E+ A I+I ++ L
Sbjct: 114 --GNE-VEPRRRI--RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNT-FYGL- 166
Query: 188 SDELVQISGEASVVKKALCQIASRLHDNPSRSQHL 222
SD LV +SG +A+ I ++L ++ SQ++
Sbjct: 167 SDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNV 201
Score = 69 (29.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
S T + V IG ++G+GG I E+ ++T A I+I + + ++ D V I+G
Sbjct: 254 STTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDF--MSGTTDRKVSITG 309
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 99 (39.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 81 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 137
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 138 KAVELIIQKIQEDP 151
Score = 75 (31.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 332 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 371
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 99 (39.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ I ++GA +++ + P + +V +SGE +
Sbjct: 85 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 141
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 142 KAVELIIQKIQEDP 155
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 336 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 375
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 114 (45.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 28 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 76
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 77 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 133
Query: 185 ALRSDELVQISGEASVVKKALCQI 208
R+ + I K +C +
Sbjct: 134 TERAITIAGIPQSIIECVKQICVV 157
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE +
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 109
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 110 KAVELIIQKIQEDP 123
Score = 75 (31.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK-ENLP 412
+ VP + +G ++GKGG + E + LT A I+I K E +P
Sbjct: 304 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP 343
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 120 (47.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 35/140 (25%), Positives = 76/140 (54%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
+ +++I++ KI+I G ER V + + E+ + A+ L ++ DR
Sbjct: 89 ISRIQIESGCKIQIAPDSGGMPERPC-VLTGTPES---------IEQAKRLLGQIVDR-- 136
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
G + G+ ++L+P+ ++G VIGKGG+ ++ ++ TG ++ +++D +P+
Sbjct: 137 CRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTG 196
Query: 185 ALRSDELVQISGEASVVKKA 204
A D+ ++I+G+A V++A
Sbjct: 197 A---DKPLRITGDAFKVQQA 213
Score = 54 (24.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 350 VPADKCGLVIGKGGENIKSINQQSGAHVEL 379
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 98 (39.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-PSCALRSDELVQ 193
DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K + P ++ +
Sbjct: 10 DG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGT---TERVCL 64
Query: 194 ISGEASVVKKALCQIASRLHDNP 216
I G + IA ++ + P
Sbjct: 65 IQGTVEALNAVHGFIAEKIREMP 87
Score = 59 (25.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK 408
+++VP S G +IGKGG+ + + + A +++ K
Sbjct: 138 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK 173
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 120 (47.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 35/140 (25%), Positives = 76/140 (54%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
+ +++I++ KI+I G ER V + + E+ + A+ L ++ DR
Sbjct: 118 ISRIQIESGCKIQIAPDSGGMPERPC-VLTGTPES---------IEQAKRLLGQIVDR-- 165
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
G + G+ ++L+P+ ++G VIGKGG+ ++ ++ TG ++ +++D +P+
Sbjct: 166 CRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTG 225
Query: 185 ALRSDELVQISGEASVVKKA 204
A D+ ++I+G+A V++A
Sbjct: 226 A---DKPLRITGDAFKVQQA 242
Score = 54 (24.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 379 VPADKCGLVIGKGGENIKSINQQSGAHVEL 408
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 104 (41.7 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 37/167 (22%), Positives = 72/167 (43%)
Query: 45 YRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFED 104
YR L + +R +T +K I +PGS ER++TV D+ +
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGKLDD--CAKA 129
Query: 105 GDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQN 164
F +A + ++ ++L +++ +LL+P+ Q+G +IG G +Q
Sbjct: 130 LSYFAQALINANIESYNYFPLKQLSSTPNTE--ETTILRLLIPNSQMGTLIGSKGARIQQ 187
Query: 165 IRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASR 211
+++ + I LP ++ LV++ G + +L +I SR
Sbjct: 188 LQNNFNISM-IASKSFLPGS---NERLVELQGTVDDLYDSL-RIISR 229
Score = 66 (28.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQI 424
SG T + P +G LIGK GS I +R+++ A I I E I E++ + I
Sbjct: 282 SGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAI--SE---AIEGENERVFTI 336
Query: 425 SGD---LDLAKDALIQVMTR 441
+G +D AK + Q R
Sbjct: 337 TGSSHAVDKAKQMIYQNFKR 356
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 105 (42.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
++GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 6 TEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPKR---I 58
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
+ ++G + + KA I +L ++ S S
Sbjct: 59 ITLAGPTNAIFKAFAMIIDKLEEDISSS 86
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 129 (50.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 83/404 (20%), Positives = 158/404 (39%)
Query: 42 DTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETV-PGSEERVVTVYSASDETN 100
D R L P +K L T+SK+ I G+ E+ +T++
Sbjct: 166 DFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIH------- 218
Query: 101 AFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ 160
A +G +A + D ++ +E DE + ++ K+L + +G +IGK G+
Sbjct: 219 ATPEG------CSEACRMILD-IMQKE--ADE-TKSAEEIPLKILAHNSLVGRLIGKEGR 268
Query: 161 IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL---HDNP- 216
++ I +TG +I I + L + + + G A +I +L ++N
Sbjct: 269 NLKKIEQDTGTKITISPLQDLT--IYNPERTITVKGSTEACSNAEVEIMKKLREAYENDI 326
Query: 217 ---SRSQHLLAXXXXXX----XXXXXXLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSR 269
++ +L+ L A AP P+ +G +
Sbjct: 327 VAVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGAAAAAPYH-PFASSSAYLSGLYGA 385
Query: 270 SLYSA-PRDDLSSKEFSLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKVDSSSTEGDD 328
S A P ++ + L P Q+ + +GA+IK+ + EG D
Sbjct: 386 SPVGAFPHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI--APAEGPD 443
Query: 329 CLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGC 383
+++ ++ EA + Q R K++ ++ + + VP+ G
Sbjct: 444 -----ATERMV--IITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSFAAGR 496
Query: 384 LIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM-VQISG 426
+IGKGG + E++ LT A + I+P++ P E++E+ V+I G
Sbjct: 497 VIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVIVKIIG 536
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 95 (38.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 461 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 520
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P D +V+I G
Sbjct: 521 V-VVPRDQTPD--ENDQVIVKIIG 541
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 96 (38.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 342 TLSATIEAVVRLQPRCSEKIERDSGL------ISFTTRLLVPTSRIGCLIGKGGSIITEM 395
T+ T E + Q EK+ R+ G + T LLV +S++G +IGKGG + E+
Sbjct: 371 TIVGTPEGQWKAQYMIFEKM-REEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVREL 429
Query: 396 RRLTKANIRILPKENL-PKIASEDDEMVQISG 426
+R+T + I+ LP+ L P +++ V I G
Sbjct: 430 QRVTGSVIK-LPEHALAPPSGGDEETPVHIIG 460
Score = 79 (32.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 39/200 (19%), Positives = 85/200 (42%)
Query: 24 NKRRYTGDDRDQF--IIGP---EDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRI 78
N+RR + R+ + + GP D R L ++ + +++++ +
Sbjct: 69 NQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDV 128
Query: 79 G--ETVPGSEERVVTVYSASDE-TNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSD 135
E V GS E+ +T+Y + TNA + + + Q + ++ E
Sbjct: 129 HRKENV-GSLEKSITIYGNPENCTNACK---RILEVMQQEAISTNKGELSPECS------ 178
Query: 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQIS 195
++ K+L ++ IG +IGK G ++ I +T +I + + S L + ++ +
Sbjct: 179 ---EICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNL--ERIITVK 233
Query: 196 GEASVVKKALCQIASRLHDN 215
G + +A QI+++L +
Sbjct: 234 GLIENMSRAENQISTKLRQS 253
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 129 (50.5 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 66/333 (19%), Positives = 140/333 (42%)
Query: 122 RVIAEELRGD-EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++I E ++ + +D+ ++ K+L ++ +G +IGK G+ ++ I +T +I I +
Sbjct: 267 KIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 326
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXLVG- 239
L + + + G KA ++ ++ ++ + +G
Sbjct: 327 LT--LYNPERTITVKGSIETCAKAEEEVMKKIRESYENDIAAMNLQAHLIPGLNLNALGL 384
Query: 240 -PTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXX 298
P +++ G+ P P G T S S Y P E ++ L P
Sbjct: 385 FPPSSS---GMPP---PSAGVSSPTT---SAS-YP-PFGQQPESE-TVHLFIPALAVGAI 432
Query: 299 XXXXXXXXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCS 358
Q+ + +GA+IK+ + EG D + + ++ EA + Q R
Sbjct: 433 IGKQGQHIKQLSRFAGASIKI--APAEGPDAKLRMV-------IITGPPEAQFKAQGRIY 483
Query: 359 EKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPK 413
K++ ++ + + VP+ G +IGKGG + E++ LT A + ++P++ P
Sbjct: 484 GKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD 542
Query: 414 IASEDDEMVQISGDL---DLAKDALIQVMTRLR 443
D +V+I+G LA+ + +++ ++R
Sbjct: 543 --ENDQVVVKITGHFYASQLAQRKIQEILAQVR 573
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 114 (45.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 43/147 (29%), Positives = 72/147 (48%)
Query: 65 VKQLRIDTKSKIRIGETVPGS-EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123
VK++R + ++I I E GS ER+ T+ + T A ++ FK+ + +
Sbjct: 40 VKRIREQSSARITISE---GSCPERITTI---TGSTAAVFHAVSMIA------FKLDEDL 87
Query: 124 IAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
A G S VT +L++P+ Q G +IGK G ++ IR TGAQ+++ D LP+
Sbjct: 88 CAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPN 144
Query: 184 CALRSDELVQISGEASVVKKALCQIAS 210
R+ V +SG + + QI +
Sbjct: 145 STERA---VTVSGVPDAIILCVRQICA 168
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 117 (46.2 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 33/140 (23%), Positives = 74/140 (52%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
+ ++++++ KI+I G +R T+ + + E+ + A+ L ++ DR
Sbjct: 106 ITRIQLESNCKIQIAADSGGMMDRPCTL-TGTPES---------IEQAKRLLGQIVDR-- 153
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
G G ++L+P+ ++G VIGKGG ++ ++ TG ++ +++D+ +P+
Sbjct: 154 CRNGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPT- 212
Query: 185 ALRSDELVQISGEASVVKKA 204
SD+ ++ISG+ V++A
Sbjct: 213 --GSDKPLRISGDPYKVQQA 230
Score = 55 (24.4 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
+P + G +IGKGG I + + + A++ +
Sbjct: 366 IPADKCGLVIGKGGETIKNINQQSGAHVEL 395
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 100 (40.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 33/128 (25%), Positives = 62/128 (48%)
Query: 79 GETVPGSEER----VVTVYSASDETNAFED----GDKF-VSPAQDALFK-VHDRVIAEEL 128
GET+ SEER +V + T A + GD + V A++ + + + D+ E+
Sbjct: 162 GETINNSEERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREV 221
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
R + S G + +P +G VIG+ G++++ I+++ G +I+ D+
Sbjct: 222 RNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTP 276
Query: 189 DELVQISG 196
D + QI+G
Sbjct: 277 DRIAQITG 284
Score = 73 (30.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 332 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 387
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 388 GTPQQIDYARQLI 400
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 95 (38.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + + VP++ G +IGKGG + E++ LT A
Sbjct: 328 EAQFKAQGRIYGKLKEENFFTAKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAE 387
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ I+P++ P DD V+I G
Sbjct: 388 V-IVPRDQTPD--ENDDVFVKIIG 408
Score = 75 (31.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++ ++LVP+ +G +IGK G ++NI +T +++ I + E+
Sbjct: 59 ELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN 100
Score = 72 (30.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 25/98 (25%), Positives = 46/98 (46%)
Query: 122 RVIAEELRGD-EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I E + + D+ +V K+L + +G +IGK G+ ++ I +TG +I I +
Sbjct: 122 RMILEIMEKEANDTKIVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQD 181
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRL---HDN 215
L + + + G KA +I +L H+N
Sbjct: 182 LT--VYNQERTISVRGGVEECCKAEGEIMKKLREAHEN 217
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 115 (45.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 24/72 (33%), Positives = 48/72 (66%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG + +LL+P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DVDGSSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 56 (24.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDAL 435
VP +G +IG+ G +I +++ A +RI K P + Q+ G D + A
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQN--DAGVRIQFK---PDDGISPERAAQVMGPPDRCQHAA 314
Query: 436 IQVMTRLRANLFDREG 451
V++ L +R+G
Sbjct: 315 -HVISELILTAQERDG 329
Score = 54 (24.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL 390
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 89 (36.4 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 76 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 117
Score = 73 (30.8 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 117 FKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ 172
FK+ + + A G S VT +L++P+ Q G +IGK G ++ IR T Q
Sbjct: 4 FKLDEDLCAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ 57
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 43/154 (27%), Positives = 79/154 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + ++P +
Sbjct: 142 TERA---ITIAGIPQSIIECVKQICVVMLESPPK 172
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 113 (44.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/72 (31%), Positives = 48/72 (66%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG + ++L+P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DIDGNSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 55 (24.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDAL 435
VP +G +IG+ G +I +++ A +RI K P + Q+ G D + A
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQN--DAGVRIQFK---PDDGISPERAAQVMGPPDRCQHAA 314
Query: 436 IQVMTRLRANLFDREG 451
V+ L +R+G
Sbjct: 315 -HVINELILTAQERDG 329
Score = 54 (24.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVEL 390
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 124 (48.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/185 (23%), Positives = 80/185 (43%)
Query: 28 YTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTKSKIRIGETVPGSEE 87
++ +D D P D R LC + +++ +T ++I I + G E
Sbjct: 52 HSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPE 111
Query: 88 RVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVP 147
R+V V D+ V+ A + R + EE G+ED+ +++ LL+P
Sbjct: 112 RIVYVRGTCDD----------VAKAYGMIV----RALLEE-HGNEDNGEDIEISINLLIP 156
Query: 148 SDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQ 207
+GC+IGK G ++ I + A++ ++ L L +D ++ I+G + A
Sbjct: 157 HHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLL----LSNDRILTINGVPDAIHIATFY 212
Query: 208 IASRL 212
I+ L
Sbjct: 213 ISQTL 217
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 367 LISFTTR-LLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
L++F + + + +G +IGK G I ++ T +I I
Sbjct: 327 LMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIII 366
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 91 (37.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 348 EAVVRLQPRCSEKIERDSGL-----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 402
EA + Q R K++ ++ + T + VP S G +IGKGG + E++ LT A
Sbjct: 460 EAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAE 519
Query: 403 IRILPKENLPKIASEDDEMVQISG 426
+ ++P++ P + +V+I G
Sbjct: 520 V-VVPRDQTPD--ENEQVIVKIIG 540
Score = 80 (33.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
+ +LLVP+ +G +IGK G ++NI +T ++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 345 RGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 399
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 400 DRIITITGTQDQIQNA 415
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 115 (45.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/72 (33%), Positives = 48/72 (66%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG + +LL+P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DIDGNSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL 390
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENL-PKIASE 417
VP +G +IG+ G +I +++ T I+ P + + P+ A++
Sbjct: 260 VPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISPERAAQ 302
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 115 (45.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/72 (33%), Positives = 48/72 (66%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG + +LL+P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DIDGNSTIQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL 390
Score = 50 (22.7 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDAL 435
VP +G +IG+ G +I +++ A +RI K P + Q+ G D + A
Sbjct: 260 VPRFVVGIVIGRNGEMIKKIQN--DAGVRIQFK---PDDGISPERAAQVMGPPDRCQHAA 314
Query: 436 IQVMTRLRANLFDRE 450
+++ L +RE
Sbjct: 315 -RIINELILTAQERE 328
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 113 (44.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/72 (31%), Positives = 48/72 (66%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG + ++L+P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DIDGNSTIQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDAL 435
VP +G +IG+ G +I +++ A +RI K P + Q+ G D + A
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQN--DAGVRIQFK---PDDGISPERAAQVMGPPDRCQHAA 314
Query: 436 IQVMTRLRANLFDREG 451
V+ L +R+G
Sbjct: 315 -HVINELILTAQERDG 329
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVEL 390
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRS 188
R+
Sbjct: 142 TERA 145
Score = 103 (41.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 135 DGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPER---II 59
Query: 193 QISGEASVVKKALCQIASRLHDNPSRS 219
++G + + KA I +L ++ S S
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEEDISSS 86
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 285 SLRLVCPXXXXXXXXXXXXXXXXQIRQESGAAIKV 319
+LRLV P +IR+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 112 (44.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 48/200 (24%), Positives = 80/200 (40%)
Query: 14 SQTDYADH----GPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLR 69
S++D+AD + + + RD+ P R CP + LR
Sbjct: 129 SESDHADDQNTGSSSSSKPVSNHRDRD--DPTFIQLRMYCPVKEASTIVGRKGETINHLR 186
Query: 70 IDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELR 129
+I + E + G ER+V V ++ V+ A F + RVI EE
Sbjct: 187 EKANVRITVSENLKGVPERIVAVKGPAEN----------VARA----FGLITRVILEEPE 232
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
+ S Q KLL+P IG +IGK G + I + A+++ ++ LP +D
Sbjct: 233 DEPASINSQQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENA-LP---YSTD 288
Query: 190 ELVQISGEASVVKKALCQIA 209
++ + G + A+ IA
Sbjct: 289 RVLSVMGVGDAIHIAVYYIA 308
Score = 55 (24.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQ 423
+G + + V S IG +IGK G+ I +R + ++I P + + M
Sbjct: 437 AGQDKYNQDVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTN 496
Query: 424 I-----SGDLDLAKDALIQVMTRLRANLFDRE 450
I +G L+ + A+ + R+ A DRE
Sbjct: 497 IRKLTLTGTLNSIQTAIYLINQRINA---DRE 525
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 341 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 395
Query: 189 DELVQISGEASVVKKALCQIASR 211
D ++ I+G ++ A + +R
Sbjct: 396 DRIITITGTQDQIQNAQYLLQNR 418
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 42/134 (31%), Positives = 64/134 (47%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
S+GG VT +LL+ ++G +IGK G+ V+ +R E+GA+I I + +C R +
Sbjct: 36 SEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPER---I 88
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRSQHL--LAXXXXXXXXXXXXLVGPTAATPIVGI 249
V I+G + KA IA + + SR L +A +G T ++G
Sbjct: 89 VTITGPTDAIFKAFAMIAYKFEE-VSRVSGLCEIAENAFGVWTQRVITLGVTVGC-VLGQ 146
Query: 250 APLMGPYGGYKGDT 263
PL P G KG T
Sbjct: 147 GPLCPP--GLKGST 158
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 86 (35.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 134 SDGGHQVTA--KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191
++GG VT +LL+ ++G +IGK G+ V+ R E+GA + I + +C R +
Sbjct: 18 TEGGLNVTLTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEG----NCPER---I 69
Query: 192 VQISGEASVVKKALCQIASRLHDNPSRS 219
+ ++G + KA I +L ++ SRS
Sbjct: 70 ITLAGPTNATFKAFAMI--KLEEDRSRS 95
Score = 77 (32.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T+ L P IGC+IG+ G+ I E+ +++ A I+I E D V I+G
Sbjct: 283 TSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEG------STDRQVTITGPA-- 334
Query: 431 AKDALIQVMTRLR 443
A +L Q + +R
Sbjct: 335 ASISLAQYLINVR 347
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 313 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 367
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 368 DRIITITGTQDQIQNA 383
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVK 202
K++VP+ G +IGKGG V+ + ++GA +++ + P + +V +SGE +
Sbjct: 29 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PDGINLQERVVTVSGEPEQNR 85
Query: 203 KALCQIASRLHDNP 216
KA+ I ++ ++P
Sbjct: 86 KAVELIIQKIQEDP 99
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 44/215 (20%), Positives = 92/215 (42%)
Query: 15 QTDYADHGP-NKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTK 73
+T A GP NK+ + G + + G + + L P ++ L+ D
Sbjct: 17 RTQDASDGPANKKAHFGGEEE----GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNN 72
Query: 74 SKIRIG---ETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130
++++ ET PG+ ER+ V + A + QD K+ ++ A++
Sbjct: 73 CRVQMSKNSETYPGTSERICLVKGRLNNIMAV------IESIQD---KIREKC-ADQGGS 122
Query: 131 D--EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
D + + K+++P+ G VIGK G +++IR + G QI++
Sbjct: 123 DAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSL 182
Query: 189 DELVQIS-GEASVVKKALCQIASRLHDNPSRSQHL 222
+ +V ++ EAS + +A ++ ++ +P + +
Sbjct: 183 ERVVTVAHDEASALLQAASRVLEKVASDPHHASEI 217
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 44/215 (20%), Positives = 92/215 (42%)
Query: 15 QTDYADHGP-NKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXXVKQLRIDTK 73
+T A GP NK+ + G + + G + + L P ++ L+ D
Sbjct: 17 RTQDASDGPANKKAHFGGEEE----GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNN 72
Query: 74 SKIRIG---ETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130
++++ ET PG+ ER+ V + A + QD K+ ++ A++
Sbjct: 73 CRVQMSKNSETYPGTSERICLVKGRLNNIMAV------IESIQD---KIREKC-ADQGGS 122
Query: 131 D--EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
D + + K+++P+ G VIGK G +++IR + G QI++
Sbjct: 123 DAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSL 182
Query: 189 DELVQIS-GEASVVKKALCQIASRLHDNPSRSQHL 222
+ +V ++ EAS + +A ++ ++ +P + +
Sbjct: 183 ERVVTVAHDEASALLQAASRVLEKVASDPHHASEI 217
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 340 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 394
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 395 DRIITITGTQDQIQNA 410
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 341 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 395
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 396 DRIITITGTQDQIQNA 411
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 341 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 395
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 396 DRIITITGTQDQIQNA 411
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 91 (37.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 33/125 (26%), Positives = 64/125 (51%)
Query: 308 QIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGL 367
Q+ + +GA+IK+ + EG D +++ ++ EA + Q R K++ ++
Sbjct: 403 QLARFAGASIKI--APAEGPD-----ATERMV--IITGPPEAQFKAQGRIFGKLKEENFF 453
Query: 368 -----ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEM- 421
+ + VP+ G +IGKGG + E++ LT A + I+P++ P E++E+
Sbjct: 454 NPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 509
Query: 422 VQISG 426
V+I G
Sbjct: 510 VKIIG 514
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 122 RVIAEELRGDED-SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
R+I + ++ + D + ++ K+L + +G +IGK G+ ++ I +TG +I I +
Sbjct: 229 RMILDIMQKEADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQD 288
Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHD 214
L + + + G A +I +L +
Sbjct: 289 LT--IYNPERTITVKGSTEACSNAEVEIMKKLRE 320
Score = 72 (30.4 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 143 KLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
++LVP+ +G +IGK G ++N+ +T +++ I + E+
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKEN 207
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 342 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 396
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 397 DRIITITGTQDQIQNA 412
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 112 (44.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 36/141 (25%), Positives = 76/141 (53%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
+ +++ ++ KI+I G ER V + + E+ + A+ L ++ DR
Sbjct: 100 ISRIQAESGCKIQIASESSGIPERPC-VLTGTPES---------IEQAKRLLGQIVDRCR 149
Query: 125 -AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS 183
D DS+ Q ++L+P+ ++G VIG+GG+ ++ ++ TG ++ +++D LP+
Sbjct: 150 NGPGFHNDIDSNSTIQ---EILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPT 206
Query: 184 CALRSDELVQISGEASVVKKA 204
A D+ ++I+G+A V++A
Sbjct: 207 GA---DKPLRITGDAFKVQQA 224
Score = 54 (24.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
VP + G +IGKGG I + + + A++ +
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL 390
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 353 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 407
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 408 DRIITITGTQDQIQNA 423
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 120 (47.3 bits), Expect = 0.00035, P = 0.00035
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 358 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 412
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 413 DRIITITGTQDQIQNA 428
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 377 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 431
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 432 DRIITITGTQDQIQNA 447
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 377 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 431
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 432 DRIITITGTQDQIQNA 447
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 377 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 431
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 432 DRIITITGTQDQIQNA 447
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
RG GG +T ++ +P D G +IGKGGQ ++ IR E+GA I+I DE L
Sbjct: 377 RGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---E 431
Query: 189 DELVQISGEASVVKKA 204
D ++ I+G ++ A
Sbjct: 432 DRIITITGTQDQIQNA 447
>UNIPROTKB|F8VYI3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01017995
ProteinModelPortal:F8VYI3 SMR:F8VYI3 PRIDE:F8VYI3
Ensembl:ENST00000483536 ArrayExpress:F8VYI3 Bgee:F8VYI3
Uniprot:F8VYI3
Length = 121
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179
R + DG Q K+L+PS G +IGKGGQ + ++ ETGA I++ K +
Sbjct: 41 RTNTGEDG--QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 89
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEAS 199
+T +++VP+ Q G +IGKGG +++IR TGA I++ E LP R+ V +SG A
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVAS-EMLPHSTERA---VTLSGTAD 208
Query: 200 VVKKALCQIASRLHDNPSR 218
+ + Q+ L + P +
Sbjct: 209 AINLCMTQVCQILLEAPPK 227
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 85 (35.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 144 LLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKK 203
LL+P+ IG VIGK G V+ I GA I+ K+ + S++++ I G+ KK
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKK 122
Query: 204 AL 205
AL
Sbjct: 123 AL 124
Score = 84 (34.6 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 46/182 (25%), Positives = 84/182 (46%)
Query: 308 QIRQESGA-AIKVDS----SSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362
+IR +GA A+ VD+ + + D ++T+S E+ +A ++ +VR + E
Sbjct: 405 EIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSA--ENKFNA-LKLIVR------QMEE 455
Query: 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMV 422
R+ I+ R+LVP LIG+ GSII + + + I++ + SE++++V
Sbjct: 456 REKN-INNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE-----SENEKLV 509
Query: 423 QISGDLD---LAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRD 479
I+G + LA ++Q + REG V + Y S N ++ Y +
Sbjct: 510 LITGSPEAKILASVLVLQKLEEYENPAIAREGLVIPLNEIY-YNKNSNNNNNNNKYSNHM 568
Query: 480 SK 481
K
Sbjct: 569 KK 570
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 85 (35.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 144 LLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKK 203
LL+P+ IG VIGK G V+ I GA I+ K+ + S++++ I G+ KK
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKK 122
Query: 204 AL 205
AL
Sbjct: 123 AL 124
Score = 84 (34.6 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 46/182 (25%), Positives = 84/182 (46%)
Query: 308 QIRQESGA-AIKVDS----SSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362
+IR +GA A+ VD+ + + D ++T+S E+ +A ++ +VR + E
Sbjct: 405 EIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSA--ENKFNA-LKLIVR------QMEE 455
Query: 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMV 422
R+ I+ R+LVP LIG+ GSII + + + I++ + SE++++V
Sbjct: 456 REKN-INNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE-----SENEKLV 509
Query: 423 QISGDLD---LAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRD 479
I+G + LA ++Q + REG V + Y S N ++ Y +
Sbjct: 510 LITGSPEAKILASVLVLQKLEEYENPAIAREGLVIPLNEIY-YNKNSNNNNNNNKYSNHM 568
Query: 480 SK 481
K
Sbjct: 569 KK 570
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 43/154 (27%), Positives = 79/154 (51%)
Query: 65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
VK++R ++ ++I I E ER++T+ + TNA F + A + K+ + +
Sbjct: 36 VKKMREESGARINISEG--NCPERIITL---AGPTNAI-----FKAFAM-IIDKLEEDIS 84
Query: 125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
+ S VT +L+VP+ Q G +IGKGG ++ IR TGAQ+++ D LP+
Sbjct: 85 SSMTNSTAASRP--PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNS 141
Query: 185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSR 218
R+ + I+G + + + QI + ++P +
Sbjct: 142 TERA---ITIAGIPQSIIECVKQICVVMLESPPK 172
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 91 (37.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 175 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 231
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 232 KPLRITGDPYKVQQAKEMVLELIRD 256
Score = 90 (36.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 79 GETVPGSEER----VVTVYSASDETNAFED----GDKF-VSPAQDALFK-VHDRVIAEEL 128
GET+ +ER +V + T A + GD + V A++ + + + D+ E+
Sbjct: 204 GETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREV 263
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188
R + S G + +P +G VIG+ G++++ I+++ G +I+ D+
Sbjct: 264 RNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTP 318
Query: 189 DELVQISG 196
D + QI+G
Sbjct: 319 DRIAQITG 326
Score = 76 (31.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + +M I
Sbjct: 375 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKMFTIR 430
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 431 GTPQQIDYARQLI 443
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 93 (37.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 122 RVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETG 170
+VI G + +VT ++L+P+D+IG VIGKGG+ ++ ++ ++G
Sbjct: 120 QVINRNQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSG 168
Score = 72 (30.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 374 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL--- 430
++VP G +IGKGG +I + T I+ P N P + +D + I G D
Sbjct: 244 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTN-P---NSEDRIAVIMGTRDQIYR 299
Query: 431 AKDALIQVMTR-LRANLFDRE-GAVSTFVP 458
A + + +++ R ++ N ++ G+ T +P
Sbjct: 300 ATERITEIVNRAIKNNGAPQDRGSAGTVLP 329
Score = 71 (30.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
VP + G +IGKGG I ++ R T A + P +ED+++ +I G
Sbjct: 338 VPAGKCGLVIGKGGENIKQIERETGATCGLAPAAEQK---NEDEKVFEIKG 385
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 98 (39.6 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 79 GETVPGSEER----VVTVYSASDETNAFE----DGDKF-VSPAQDALFK-VHDRVIAEEL 128
GET+ +ER +V + T A + GD F V A+D + + D+ E+
Sbjct: 194 GETIKQLQERAGVKMVMIQDGPQNTGADKPLRISGDPFKVQQAKDMVMDLIRDQGFREQ- 252
Query: 129 RGDEDS----DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179
RG+ S GG + + VP +G VIG+ G++++ I+++TG +I+ D+
Sbjct: 253 RGEYGSRAGGGGGGGESLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDD 307
Score = 97 (39.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 22/87 (25%), Positives = 48/87 (55%)
Query: 134 SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQ 193
+DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D+ ++
Sbjct: 169 NDGPGMSVHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---DKPLR 225
Query: 194 ISGEASVVKKALCQIASRLHDNPSRSQ 220
ISG+ V++A + + D R Q
Sbjct: 226 ISGDPFKVQQAKDMVMDLIRDQGFREQ 252
Score = 68 (29.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL FT VPT + G +IGKGG I + + + A I + + N P + + ++ +
Sbjct: 373 GLQEFT--FTVPTMKTGLIIGKGGETIKNISQQSGARIEL--QRNPPPNSDPNIKIFTVR 428
Query: 426 G 426
G
Sbjct: 429 G 429
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 107 (42.7 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 23/72 (31%), Positives = 47/72 (65%)
Query: 133 DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192
D DG V ++ +P+ ++G VIGKGG+ ++ ++ TG ++ +++D LP+ A D+ +
Sbjct: 157 DVDGNSTVQ-EIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPL 212
Query: 193 QISGEASVVKKA 204
+I+G+ V++A
Sbjct: 213 RITGDPFKVQQA 224
Score = 56 (24.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDAL 435
VP +G +IG+ G +I +++ A +RI K P + Q+ G D + A
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQN--DAGVRIQFK---PDDGISPERAAQVMGPPDRCQHAA 314
Query: 436 IQVMTRLRANLFDREG 451
V++ L +R+G
Sbjct: 315 -HVISELILTAQERDG 329
Score = 55 (24.4 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 376 VPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG 426
VP + G +IGKGG I + + + A++ + + N P + + I G
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVEL--QRNPPPSTDPNLRIFTIRG 409
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 116 (45.9 bits), Expect = 0.00080, P = 0.00080
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
+VT + +P+D +GC+IG+GG + IR +G++I I K+ H + + + I+G
Sbjct: 320 KVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDET----GERMFTITGTH 375
Query: 199 SVVKKALCQIASRLHDNPSRSQH 221
+KAL + +L R H
Sbjct: 376 EENEKALFLLYQQLEMEKDRRSH 398
Score = 86 (35.3 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDL 430
T + +P +GC+IG+GGS I+E+RR + + I I KE P + + M I+G +
Sbjct: 322 TQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIA-KE--PHDET-GERMFTITGTHEE 377
Query: 431 AKDALIQVMTRL 442
+ AL + +L
Sbjct: 378 NEKALFLLYQQL 389
Score = 73 (30.8 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190
D+ + Q+T + L+ + + G +IGK G+ V +RS T + + K +P+ D
Sbjct: 85 DDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKA--VPNV---HDR 139
Query: 191 LVQISGEASVVKKA---LCQIASRLHDNP 216
++ ISG V +A + I ++ NP
Sbjct: 140 VLTISGPLENVVRAYRFIIDIFAKNSTNP 168
>WB|WBGene00010908 [details] [associations]
symbol:M88.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:Z34802 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 PIR:T23837 RefSeq:NP_001022695.1
ProteinModelPortal:Q21605 SMR:Q21605 IntAct:Q21605 STRING:Q21605
PaxDb:Q21605 PRIDE:Q21605 EnsemblMetazoa:M88.5a GeneID:175595
KEGG:cel:CELE_M88.5 UCSC:M88.5a CTD:175595 WormBase:M88.5a
HOGENOM:HOG000021364 InParanoid:Q21605 OMA:FPIHSAS NextBio:888828
ArrayExpress:Q21605 Uniprot:Q21605
Length = 828
Score = 89 (36.4 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE-NLPKIASEDD 419
S ++ T + VPT IG +IGKGG + E++R+T A ++I +E N ++ DD
Sbjct: 677 SHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEEERNGGEVYRHDD 732
Score = 78 (32.5 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 29/136 (21%), Positives = 63/136 (46%)
Query: 69 RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEEL 128
R+D + + TV G+ +R++TV+ +++ A A+ ++ D + +E +
Sbjct: 343 RVDFVNLSKKERTVLGNNDRILTVHGVAEQ-------------ATKAVARILDVIQSEAV 389
Query: 129 RGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS--CAL 186
+ +D + G ++ + G +IGK G ++ I +TG I + K P L
Sbjct: 390 K--DDVNVGADTVLRMRAHNQLCGRLIGKAGSSIKEIMQKTGTNITVTKYIEPPGGISGL 447
Query: 187 RSDELVQISGEASVVK 202
++EL+ + +V+
Sbjct: 448 TANELLGLMERTIMVR 463
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 89 (36.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRI 405
D G + + LVP IGC+IG+ GS I+E+R+++ A+I+I
Sbjct: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 298
Score = 71 (30.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 117 FKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETG 170
FK+ + + A G S VT +L++P+ Q G +IGK G ++ IR G
Sbjct: 47 FKLDEDLCAAPANGGNVSRP--PVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 91 (37.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 171 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 227
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 228 KPLRITGDPYKVQQAKEMVLELIRD 252
Score = 73 (30.8 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 370 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 425
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 426 GTPQQIDYARQLI 438
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 91 (37.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 171 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 227
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 228 KPLRITGDPYKVQQAKEMVLELIRD 252
Score = 73 (30.8 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 370 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 425
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 426 GTPQQIDYARQLI 438
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 91 (37.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 176 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 232
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 233 KPLRITGDPYKVQQAKEMVLELIRD 257
Score = 73 (30.8 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 375 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 430
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 431 GTPQQIDYARQLI 443
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 91 (37.1 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 176 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 232
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 233 KPLRITGDPYKVQQAKEMVLELIRD 257
Score = 73 (30.8 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 375 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 430
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 431 GTPQQIDYARQLI 443
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 91 (37.1 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 130 GDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189
G DG ++++P+ + G VIGKGG+ ++ ++ G ++ +++D + A D
Sbjct: 176 GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA---D 232
Query: 190 ELVQISGEASVVKKALCQIASRLHD 214
+ ++I+G+ V++A + + D
Sbjct: 233 KPLRITGDPYKVQQAKEMVLELIRD 257
Score = 73 (30.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425
GL F +VPT + G +IGKGG I + + + A I + + N P A + ++ I
Sbjct: 375 GLQEFN--FIVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIR 430
Query: 426 G---DLDLAKDAL 435
G +D A+ +
Sbjct: 431 GTPQQIDYARQLI 443
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 546 454 0.00093 118 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 173
No. of states in DFA: 608 (65 KB)
Total size of DFA: 238 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.16u 0.09s 35.25t Elapsed: 00:00:03
Total cpu time: 35.21u 0.09s 35.30t Elapsed: 00:00:03
Start: Mon May 20 17:57:33 2013 End: Mon May 20 17:57:36 2013
WARNINGS ISSUED: 1